RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8787
(364 letters)
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 460 bits (1185), Expect = e-163
Identities = 114/246 (46%), Positives = 164/246 (66%), Gaps = 2/246 (0%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
+ ++YANV +SL+G T D+D++ IRENTEGE+SG+EHE V GVV+S+K++T +
Sbjct: 100 QLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKT 159
Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEK-FPEVKFEEKYLDTV 239
R+A FAF++AK NR VTAVHKANIM++ DGLF + +K +P++ +D
Sbjct: 160 ERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNA 219
Query: 240 CLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFES-VHGTAPD 298
+ V P Q+DVLV P++YG IL ++ A L+GG GL N G + A+FE D
Sbjct: 220 SMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLD 279
Query: 299 IAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFT 358
I G+++ANPTA++LS+ +ML HL LN +A I KA +TI EGK+ T D+GG + ++FT
Sbjct: 280 IKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFT 339
Query: 359 NEICSK 364
NEI +K
Sbjct: 340 NEIINK 345
Score = 105 bits (263), Expect = 1e-25
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 23/126 (18%)
Query: 56 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNS-NYATKWFS 114
+ ++YANV +SL+G T D+D++ IRENTEGE+SG+EHE V GV S T+ +
Sbjct: 100 QLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKT 159
Query: 115 ERGASVEFNLYANVRPCRSL------------EGYPTLYDDVDVVTIRENTEGEYSGIEH 162
ER A F+ +A +S+ +G L+ + I E + EY I+
Sbjct: 160 ERIARFAFD-FAKKYNRKSVTAVHKANIMKLGDG---LFRN----IITEIGQKEYPDIDV 211
Query: 163 E--IVD 166
IVD
Sbjct: 212 SSIIVD 217
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 459 bits (1184), Expect = e-163
Identities = 137/248 (55%), Positives = 178/248 (71%), Gaps = 4/248 (1%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
F L+ANVRP +S+EG+ T Y++VD+V IRENTEGEYSGIEH + GVVQSIKLIT +AS
Sbjct: 106 TFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDAS 165
Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVC 240
RV +AFEYA+ R +V VHK+ I R++DGLF+ ++ ++++P++ E + +D
Sbjct: 166 ERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSV 225
Query: 241 LNMVQDPTQYD--VLVMPNLYGDILSDMCAGL-VGGLGLTPSGNIGLNGALFESVHGTAP 297
L +V +P+ Y V V PNLYGDILSD+ +GL G LGLTPS NIG ++FE+VHG+AP
Sbjct: 226 LKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKISIFEAVHGSAP 285
Query: 298 DIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG-KYRTGDLGGKAKCSE 356
DIAG+D ANPTALLLS+VMML H+ L HAD IQ A L TI G + RTGDL G A S
Sbjct: 286 DIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSS 345
Query: 357 FTNEICSK 364
FT + +
Sbjct: 346 FTEAVIKR 353
Score = 104 bits (261), Expect = 2e-25
Identities = 49/134 (36%), Positives = 64/134 (47%), Gaps = 28/134 (20%)
Query: 56 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNS-NYATKWFS 114
F L+ANVRP +S+EG+ T Y++VD+V IRENTEGEYSGIEH + GV S T+ S
Sbjct: 106 TFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDAS 165
Query: 115 ERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVT---IRENTEG-----------EYSGI 160
ER F YA V VV I+ +G EY +
Sbjct: 166 ERVIRYAFE-YARAIGRPR----------VIVVHKSTIQRLADGLFVNVAKELSKEYPDL 214
Query: 161 EHE--IVDGVVQSI 172
E ++D V +
Sbjct: 215 TLETELIDNSVLKV 228
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 446 bits (1149), Expect = e-158
Identities = 109/251 (43%), Positives = 153/251 (60%), Gaps = 10/251 (3%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
+++YAN+RP +S+ G T Y +VD++ +RENTE Y G EH + DGV +K+IT AS
Sbjct: 87 IYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFAS 146
Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVC 240
R+A+ +A R KVT VHKAN+MR++DGLF CR + +V++ E Y+D
Sbjct: 147 ERIAKVGLNFAL-RRRKKVTCVHKANVMRITDGLFAEACRSVLK--GKVEYSEMYVDAAA 203
Query: 241 LNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIA 300
N+V++P +DV+V N+YGDILSD + + G LG+ PS NIG ALFE VHG A DIA
Sbjct: 204 ANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKKALFEPVHGAAFDIA 263
Query: 301 GKDLANPTALLLSAVMMLRHLDLNTH-------ADVIQKAALDTIKEGKYRTGDLGGKAK 353
GK++ NPTA LLS MM + ++ + ++ A KE K T D+GG A
Sbjct: 264 GKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVGGNAT 323
Query: 354 CSEFTNEICSK 364
+ NEI +K
Sbjct: 324 TDDLINEIYNK 334
Score = 101 bits (254), Expect = 2e-24
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 56 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE 115
+++YAN+RP +S+ G T Y +VD++ +RENTE Y G EH + DGV K +
Sbjct: 87 IYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVA---VGMKIITR 143
Query: 116 RG 117
Sbjct: 144 FA 145
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 451 bits (1163), Expect = e-158
Identities = 110/249 (44%), Positives = 158/249 (63%), Gaps = 5/249 (2%)
Query: 121 EFNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEE 178
F YANVRP R PT Y +D+V +REN E Y+GIEH V Q++KLI+ +
Sbjct: 106 LFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWK 165
Query: 179 ASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDT 238
S ++ FAFE A+ R KV K+NIM++++G R A+++P+++ +D
Sbjct: 166 GSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDN 225
Query: 239 VCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPD 298
+V+ P Q++V+V N+ GDILSD+ +GL+GGLG PS NIG A+FE+VHG+AP
Sbjct: 226 AAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPK 285
Query: 299 IAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG---KAKCS 355
AGK++ NPTA+LLSAVMMLR+L+ AD+I+ A L T++EG+ TGD+ G AK +
Sbjct: 286 YAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTT 345
Query: 356 EFTNEICSK 364
E+T I
Sbjct: 346 EYTEAIIQN 354
Score = 98.6 bits (246), Expect = 6e-23
Identities = 39/136 (28%), Positives = 49/136 (36%), Gaps = 30/136 (22%)
Query: 56 EFNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTEGEYSGIEHEIVDGVCNS-NYATKW 112
F YANVRP R PT Y +D+V +REN E Y+GIEH V + +
Sbjct: 106 LFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWK 165
Query: 113 FSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVT---IRENTEG-----------EYS 158
SE+ F A + V T I + EG EY
Sbjct: 166 GSEKIVRFAFE-LARAEGRKK----------VHCATKSNIMKLAEGTLKRAFEQVAQEYP 214
Query: 159 GIEHE--IVDGVVQSI 172
IE IVD +
Sbjct: 215 DIEAVHIIVDNAAHQL 230
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 436 bits (1123), Expect = e-154
Identities = 108/244 (44%), Positives = 147/244 (60%), Gaps = 3/244 (1%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
+LYANVRP +S P VD+V +RENTEG Y E +D V + +I+++AS
Sbjct: 89 RLDLYANVRPAKSRPV-PGSRPGVDLVIVRENTEGLYVEQERRYLD-VAIADAVISKKAS 146
Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVC 240
R+ A A+ R + HKAN++ ++ GLFL ++ A+ FP V ++ +D
Sbjct: 147 ERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCA 206
Query: 241 LNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIA 300
+ +V P ++DV+V NL GDILSD+ AGLVGGLGL PSGNIG A+FE VHG+APDIA
Sbjct: 207 MQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIA 266
Query: 301 GKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNE 360
GK +ANPTA +LSA MML +L A ++KA ++ G RT DLGG A FT
Sbjct: 267 GKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERGP-RTPDLGGDATTEAFTEA 325
Query: 361 ICSK 364
+
Sbjct: 326 VVEA 329
Score = 93.7 bits (234), Expect = 7e-22
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 36 INTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGI 95
+P+ + G +LYANVRP +S P VD+V +RENTEG Y
Sbjct: 69 ATSPTRKVPGFFGAIRYLRRRLDLYANVRPAKSRPV-PGSRPGVDLVIVRENTEGLYVEQ 127
Query: 96 EHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSL 134
E +D +K SER A RP ++L
Sbjct: 128 ERRYLDVAIADAVISKKASERIGRAALR-IAEGRPRKTL 165
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 427 bits (1099), Expect = e-150
Identities = 103/263 (39%), Positives = 151/263 (57%), Gaps = 21/263 (7%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDG----VVQSIKLIT 176
+ LYANVRP +SL+G VD+V +RENTE Y E + + V ++I+ I+
Sbjct: 103 KMGLYANVRPVKSLDGAKG--KPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRIS 160
Query: 177 EEASSRVAEFAFEYAKTNN------------RSKVTAVHKANIMRMSDGLFLRCCRDAAE 224
EEAS+++ + AFE AK+ + VT +HK+N+M ++DGLF CR A
Sbjct: 161 EEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQS 220
Query: 225 ---KFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGN 281
+ + +E+ +D++ + ++P +DV+V PNLYGDILSD A L+G LGL PS N
Sbjct: 221 LDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSAN 280
Query: 282 IGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG 341
+G N + E VHG+APDIAG+ +ANP A S +ML + A I A + EG
Sbjct: 281 VGDNFVMSEPVHGSAPDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEG 340
Query: 342 KYRTGDLGGKAKCSEFTNEICSK 364
K T DLGGK+ +E T+ + +
Sbjct: 341 KVLTPDLGGKSGTNEITDAVLAN 363
Score = 90.3 bits (225), Expect = 2e-20
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 56 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSN-YATKWFS 114
+ LYANVRP +SL+G VD+V +RENTE Y E + + A + S
Sbjct: 103 KMGLYANVRPVKSLDGAKG--KPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRIS 160
Query: 115 ERG 117
E
Sbjct: 161 EEA 163
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 412 bits (1061), Expect = e-144
Identities = 84/290 (28%), Positives = 142/290 (48%), Gaps = 47/290 (16%)
Query: 121 EFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHE-------------- 163
+LYAN+RP + +EG + + VD++ RENT+ Y GIE+
Sbjct: 117 MLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLR 176
Query: 164 ------IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLR 217
I D IK++++ + R+ A +YA + R KVT +HK N+M+ ++G F
Sbjct: 177 KELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFRE 236
Query: 218 CCRDAAEK------------------FPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLY 259
+ A K ++ ++ D + ++ P +YD+++ PN+
Sbjct: 237 WAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVN 296
Query: 260 GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319
GD +SD L+G +G+ NIG G +FE++HGTAP AGK++ANPT ++ + +MLR
Sbjct: 297 GDYISDAAGALIGNIGMLGGANIGDEGGMFEAIHGTAPKYAGKNVANPTGIIKAGELMLR 356
Query: 320 HLDLNTHADVIQKAALDTIKEGKYRTGDL-----GGKAKCSEFTNEICSK 364
+ N AD+I+KA I++ K T D+ E+ +E+
Sbjct: 357 WMGWNEAADLIEKAINMAIRDKK-VTQDIARFMGVKALGTKEYADELIKI 405
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 406 bits (1045), Expect = e-141
Identities = 94/293 (32%), Positives = 138/293 (47%), Gaps = 50/293 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTL---YDDVDVVTIRENTEGEYSGIEHE-------------- 163
+LYANVRP L+G P+ + V+ V RENTE Y+GIE
Sbjct: 117 VLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLK 176
Query: 164 ------IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLR 217
I + IK I+E A+ R+ A YA NNR VT VHK NIM+ ++G F
Sbjct: 177 NEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRD 236
Query: 218 CCRDAAEKF---------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLVMP 256
+ A++ ++ +++ D + ++ +YDV+ +P
Sbjct: 237 WGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALP 296
Query: 257 NLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVM 316
NL GD LSD A L+GGLG+ P NIG +FE VHG+AP AG++ NPTA +L+ +
Sbjct: 297 NLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVFEPVHGSAPKYAGQNKVNPTAEILTGAL 356
Query: 317 MLRHLDLNTHADVIQKAALDTIKEGKYRTGDL-----GGKAKCSEFTNEICSK 364
M ++ +++I+KA TI G T D+ G K EF +
Sbjct: 357 MFEYIGWKDASEMIKKAVEMTISSGI-VTYDIHRHMGGTKVGTREFAEAVVEN 408
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 400 bits (1031), Expect = e-139
Identities = 90/295 (30%), Positives = 134/295 (45%), Gaps = 51/295 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTL---YDDVDVVTIRENTEGEYSGIEHEIVDGVVQ------- 170
E +LY +RP + +G P+ + ++V REN+E Y+GIE +
Sbjct: 131 ELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQ 190
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +++E + R+ A +YA N+R VT VHK NIM+ ++G
Sbjct: 191 EEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGA 250
Query: 215 FLRCCRDAAEKF--------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A+K E+ ++ D ++ P +YDV+
Sbjct: 251 FRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIA 310
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P N+ + A+FE+ HGTAP AGKD NP + +LSA
Sbjct: 311 TLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSA 370
Query: 315 VMMLRHLDLNTHADVIQKAALDTIKEGK-----YRTGDLGGKAKCSEFTNEICSK 364
MMLRHL ADVI A +IK+ + R + + CS F +
Sbjct: 371 EMMLRHLGWTEAADVIISAMEKSIKQKRVTYDFARLMEGATQVSCSGFGQVLIEN 425
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 395 bits (1017), Expect = e-136
Identities = 87/294 (29%), Positives = 134/294 (45%), Gaps = 51/294 (17%)
Query: 121 EFNLYANVRPCRSL--EGYPTLYDDVDVVTIRENTEGEYSGIEHE--------------- 163
+LYAN+RP R D VD+V RENTE Y+GIE
Sbjct: 128 ALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAE 187
Query: 164 -----IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRC 218
I + +K I+ A+ R+ E A E+A N + VT +HK NIM+ ++G F+R
Sbjct: 188 EFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRW 247
Query: 219 CRDAAEKF---------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLVMPN 257
+ A + ++ ++ D + ++ P Y V+V PN
Sbjct: 248 AYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPN 307
Query: 258 LYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMM 317
L GD +SD + LVGG+G+ N+G A+ E VHGTAP AGKDL NP+A +LSA ++
Sbjct: 308 LNGDYISDAASALVGGIGMAAGMNMGDGIAVAEPVHGTAPKYAGKDLINPSAEILSASLL 367
Query: 318 L-RHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKA------KCSEFTNEICSK 364
+ + +++ A ++ K T DL + SE+T + +
Sbjct: 368 IGEFMGWREVKSIVEYAIRKAVQSKK-VTQDLARHMPGVQPLRTSEYTETLIAY 420
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 363 bits (933), Expect = e-124
Identities = 95/310 (30%), Positives = 138/310 (44%), Gaps = 66/310 (21%)
Query: 121 EFNLYANVRPCRSLEGYPTL---YDDVDVVTIRENTEGEYSGIEHEIVDGVVQ------- 170
E +L+ +RP R G P+ +D D+V RENTE Y+GIE+ VQ
Sbjct: 112 ELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQ 171
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK ++EE +SR+ A +YA + R VT VHK NIM+ ++G
Sbjct: 172 NELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGA 231
Query: 215 FLRCCRDAAEK---------------------------------FPEVKFEEKYLDTVCL 241
F + AEK ++ ++ D
Sbjct: 232 FKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQ 291
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIG--LNGALFESVHGTAPDI 299
++ P ++DV+ NL GD +SD A VGG+G+ P NI A+FE+ HGTAP
Sbjct: 292 QILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKY 351
Query: 300 AGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGK-----YRTGDLGGKAKC 354
AG D NP++++LS V++L HL N AD++ K+ TI R D + KC
Sbjct: 352 AGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASKVVTYDFARLMDGATEVKC 411
Query: 355 SEFTNEICSK 364
SEF E+
Sbjct: 412 SEFGEELIKN 421
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 340 bits (875), Expect = e-115
Identities = 92/309 (29%), Positives = 131/309 (42%), Gaps = 66/309 (21%)
Query: 121 EFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHE-------------- 163
+ +LY +RP R EG P+ + VD+V REN+E Y+GIE
Sbjct: 121 DLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLR 180
Query: 164 ---------IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
D IK ++ E S R+ +YA + + V+ VHK NIM+ ++G
Sbjct: 181 EEMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGG 240
Query: 215 FLRCCRD---------------------------------AAEKFPEVKFEEKYLDTVCL 241
F A ++ ++ D
Sbjct: 241 FRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQ 300
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAG 301
++ P Y V+ NL GD +SD A VGG+G+ P N+ A+FE+ HGTAPDIAG
Sbjct: 301 QILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTHAIFEATHGTAPDIAG 360
Query: 302 KDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG------KAKCS 355
+ ANP++L+LSAVMML HL A I A TI G+ TGDL +
Sbjct: 361 QGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIAAGE-VTGDLAALRGDVPALSTT 419
Query: 356 EFTNEICSK 364
EFT + +
Sbjct: 420 EFTAALIRR 428
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 296 bits (761), Expect = 6e-99
Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 18/261 (6%)
Query: 121 EFNLYANVRPCRSLEGYPT-----LYDDVDVVTIRENTEGEYSGIEHEIVDG----VVQS 171
EF+ Y N+RP R G P D+D V +RENTEGEYS + + + +V
Sbjct: 100 EFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQ 159
Query: 172 IKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKF 231
+ T R+ ++AF+ A+ R VT+ K+N M +S + + A +P V +
Sbjct: 160 ESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSW 219
Query: 232 EEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG---AL 288
+++++D +C V P ++DV+V NL+GDILSD+ G +G+ PS N+ +L
Sbjct: 220 DKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSL 279
Query: 289 FESVHGTAPDIAGKDLANPTALLLSAVMMLRHL-----DLNTHADVIQKAALDTIKEGKY 343
FE VHG+APDI GK++ANP A++ S +ML L D + A I +G
Sbjct: 280 FEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADG-S 338
Query: 344 RTGDLGGKAKCSEFTNEICSK 364
T D+GG + I
Sbjct: 339 VTPDMGGTLSTQQVGAAISDT 359
Score = 63.8 bits (156), Expect = 2e-11
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 56 EFNLYANVRPCRSLEGYPT-----LYDDVDVVTIRENTEGEYSGIEHEIVDG 102
EF+ Y N+RP R G P D+D V +RENTEGEYS + + +
Sbjct: 100 EFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFEN 151
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 245 bits (629), Expect = 2e-79
Identities = 81/257 (31%), Positives = 135/257 (52%), Gaps = 25/257 (9%)
Query: 121 EFNLYANVRPCRSLEGYPT---LYDDVDVVTIRENTEGEYSGI--------EHEIVDGVV 169
E + + N+RP R G + +D V +RE TEG Y+G +E+
Sbjct: 90 ELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVA---T 146
Query: 170 QSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEV 229
+ + + T RV AFE A+ + +T VHK N++ + GL+LR + E +P+V
Sbjct: 147 E-VSVNTAFGVRRVVADAFERARRRRK-HLTLVHKTNVLTFAGGLWLRTVDEVGECYPDV 204
Query: 230 KFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGA-- 287
+ +++D ++M+ DP ++DV+V NL+GDI++D+ A + GG+GL SGNI A
Sbjct: 205 EVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANP 264
Query: 288 -LFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTG 346
+FE VHG+APDIAG+ +A+PTA ++S ++L HL + A + +A +
Sbjct: 265 SMFEPVHGSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLAT------ 318
Query: 347 DLGGKAKCSEFTNEICS 363
+ S+ I +
Sbjct: 319 RGSERLATSDVGERIAA 335
Score = 59.1 bits (144), Expect = 5e-10
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 56 EFNLYANVRPCRSLEGYPT---LYDDVDVVTIRENTEGEYSGI 95
E + + N+RP R G + +D V +RE TEG Y+G
Sbjct: 90 ELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGN 132
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 213 bits (544), Expect = 2e-66
Identities = 88/252 (34%), Positives = 139/252 (55%), Gaps = 12/252 (4%)
Query: 121 EFNLYANVRPCR---SLEGYPTLYDDV----DVVTIRENTEGEYSGIEHEIVDGVVQSIK 173
+L+AN+RP + LE L +++ DV+ +RE T G Y G + + + +
Sbjct: 99 SQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTE 158
Query: 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE 233
++ RVA AFE A+ + V +V KAN++ + + + + + +P+V E
Sbjct: 159 RYSKPEVERVARVAFEAARKRRK-HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEH 216
Query: 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVH 293
+Y+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VH
Sbjct: 217 QYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVH 276
Query: 294 GTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLGGKA 352
G+APDIAGK +ANPTA +LSA MML H L A ++ A + E DLGG A
Sbjct: 277 GSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLET--PPPDLGGSA 334
Query: 353 KCSEFTNEICSK 364
FT +
Sbjct: 335 GTEAFTATVLRH 346
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 210 bits (537), Expect = 2e-65
Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 16/256 (6%)
Query: 121 EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSGIEHEIVDGVVQSI 172
FNL+AN+RPC+ SL L +++ D++ +RE T G Y G + ++
Sbjct: 103 HFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFG-KQDLGKESAYDT 161
Query: 173 KLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFE 232
++ T++ R+A AFE A+ + KV + KAN++ S L+ + A+ + ++ E
Sbjct: 162 EIYTKKEIERIARIAFESARIRKK-KVHLIDKANVLASSI-LWREVVANVAKDYQDINLE 219
Query: 233 EKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFES 291
Y+D + +V++P+ +DV++ NL+GDILSD A + G LGL S ++ G L+E
Sbjct: 220 YMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP 279
Query: 292 VHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLGG 350
G+APDIA ++ANP A +LSA +ML++ A I+ A + +G T DL
Sbjct: 280 AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQG-KMTKDLNA 338
Query: 351 KAK--CSEFTNEICSK 364
K+ E + I
Sbjct: 339 KSYLNTDEMGDCILEI 354
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 208 bits (532), Expect = 1e-64
Identities = 80/260 (30%), Positives = 135/260 (51%), Gaps = 19/260 (7%)
Query: 121 EFNLYANVRPCR---SLEGYPTLYDDV----DVVTIRENTEGEYSG--IEHEIVDGVVQS 171
+LYAN+RP + L L ++ D++ +RE T Y G E++DG +
Sbjct: 97 GLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRG 156
Query: 172 IKLI--TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEV 229
+ E+ R+A AF A+ + ++ +V KAN++ + L+ + A +P+V
Sbjct: 157 FNTMVYDEDEIRRIAHVAFRAAQGRRK-QLCSVDKANVLETTR-LWREVVTEVARDYPDV 214
Query: 230 KFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALF 289
+ Y+D + +++ P Q+DVL+ N++GDILSD + L G +G+ PS ++G A++
Sbjct: 215 RLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMY 274
Query: 290 ESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDL 348
E +HG+APDIAG+D ANP A +LS MMLRH L+ A ++ A + +G RT D+
Sbjct: 275 EPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRTADI 333
Query: 349 GGKAK----CSEFTNEICSK 364
+ +
Sbjct: 334 AAPGTPVIGTKAMGAAVVNA 353
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI,
protein structure initiative, joint center for structu
genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Length = 366
Score = 208 bits (531), Expect = 2e-64
Identities = 94/257 (36%), Positives = 139/257 (54%), Gaps = 17/257 (6%)
Query: 121 EFNLYANVRPCR---SLEGYPTL-----YDDVDVVTIRENTEGEYSGIEHEIVDGVVQSI 172
NLYAN+RP + SL L VD+VT+RE + G Y G + +
Sbjct: 109 MLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDT 168
Query: 173 KLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFE 232
+ + R+A AFE AK + KVT+V KAN++ S L+ + + A ++P+V+
Sbjct: 169 MIYDRKTVERIARTAFEIAKNRRK-KVTSVDKANVLYSSM-LWRKVVNEVAREYPDVELT 226
Query: 233 EKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESV 292
Y+D + ++ P+Q+DV++ N++GDILSD A L G LGL PS + G L+E
Sbjct: 227 HIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDKN-LYEPA 285
Query: 293 HGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLGGK 351
G+APDIAGK++ANP A +LS MML H + A I++A I+EG YRT D+
Sbjct: 286 GGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEG-YRTRDIAED 344
Query: 352 AK----CSEFTNEICSK 364
+ S+ + IC K
Sbjct: 345 PEKAVSTSQMGDLICKK 361
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 206 bits (526), Expect = 1e-63
Identities = 92/261 (35%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 121 EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSG--IEHEIVDGVVQ 170
F L++N+RP + LE + L D+ D++ +RE T G Y G E +
Sbjct: 101 HFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK 160
Query: 171 SIKLI--TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPE 228
+ R+A AFE A+ R KVT++ KAN+++ S L+ D A+ +P+
Sbjct: 161 AFDTEVYHRFEIERIARIAFESARKRRR-KVTSIDKANVLQSSI-LWREIVNDVAKTYPD 218
Query: 229 VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-A 287
V+ Y+D + +++DP+Q+DVL+ NL+GDILSD CA + G +G+ PS ++ G
Sbjct: 219 VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFG 278
Query: 288 LFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTG 346
L+E G+APDIAGK++ANP A +LS ++LR+ LD N A I++A ++EG RTG
Sbjct: 279 LYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRTG 337
Query: 347 DL---GGKAKCSEFTNEICSK 364
DL E + I
Sbjct: 338 DLARGAAAVSTDEMGDIIARY 358
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate
and isopropylmalate dehydrogenases family, biosynthesis;
2.25A {Arabidopsis thaliana}
Length = 405
Score = 207 bits (528), Expect = 1e-63
Identities = 86/262 (32%), Positives = 133/262 (50%), Gaps = 21/262 (8%)
Query: 121 EFNLYANVRPCR---SLEGYPTLYDDV----DVVTIRENTEGEYSG---IEHEIVDGVVQ 170
++AN+RP L TL +V D++ +RE T G Y G +G
Sbjct: 138 ALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEV 197
Query: 171 SIKLI--TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPE 228
R+A AFE A+ K+ +V KAN++ S L+ + A ++P+
Sbjct: 198 GFNTEVYAAHEIDRIARVAFETARKRRG-KLCSVDKANVLEASI-LWRKRVTALASEYPD 255
Query: 229 VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-A 287
V+ Y+D + +V+DP Q+D +V N++GDILSD + + G +G+ PS ++ +G
Sbjct: 256 VELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPG 315
Query: 288 LFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTG 346
LFE +HG+APDIAG+D ANP A +LSA M+L++ L A I+ A L + G +RTG
Sbjct: 316 LFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNG-FRTG 374
Query: 347 DLGGKAK----CSEFTNEICSK 364
D+ C E E+
Sbjct: 375 DIYSAGTKLVGCKEMGEEVLKS 396
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 206 bits (526), Expect = 2e-63
Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 19/260 (7%)
Query: 121 EFNLYANVRPCR---SLEGYPTLYDDV----DVVTIRENTEGEYSGIEHEIV-DGVVQSI 172
+L+AN+RP + SL L +V D+V +RE T G Y G E +G ++
Sbjct: 119 GLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAV 178
Query: 173 KLI--TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVK 230
+ T E R+ AFE A T + KVT+V KAN++ S L+ + A+++P+V+
Sbjct: 179 DTLLYTREEIERIIRKAFELALTRKK-KVTSVDKANVLESSR-LWREVAEEVAKEYPDVE 236
Query: 231 FEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALF 289
E +D + ++++P Q+DV+V N++GDILSD + + G LG+ PS ++ +G L+
Sbjct: 237 LEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLY 296
Query: 290 ESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDL 348
E VHG+APDIAGK +ANP A +LSA MMLR+ L A I+KA + EG YRT D+
Sbjct: 297 EPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG-YRTADI 355
Query: 349 ----GGKAKCSEFTNEICSK 364
G +E T+E+ +
Sbjct: 356 AKPGGKYVSTTEMTDEVKAA 375
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase; HET: IPM; 1.48A {Shewanella benthica}
PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A*
3vl3_A*
Length = 375
Score = 205 bits (523), Expect = 4e-63
Identities = 83/264 (31%), Positives = 137/264 (51%), Gaps = 23/264 (8%)
Query: 121 EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSG--IEHEIVDGVVQ 170
F L+ N+RP + LE L D+ D++ +RE T G Y G + +
Sbjct: 110 HFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEE 169
Query: 171 SIKLI--TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPE 228
+ + + + R+A+ AFE A+ + KVT+V KAN++ S L+ + A+ +P+
Sbjct: 170 AFDTMRYSRKEIRRIAKIAFESAQGRRK-KVTSVDKANVLACSV-LWREVVEEVAKDYPD 227
Query: 229 VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-A 287
V+ E Y+D + +++ P ++DV++ NL+GDI+SD A L G +GL S ++ G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 288 LFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTG 346
++E G+APDIAG+ +ANP A +LSA ++LRH L L A I+ A + +G Y T
Sbjct: 288 MYEPAGGSAPDIAGQGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSDG-YLTC 346
Query: 347 DL------GGKAKCSEFTNEICSK 364
+L S+ + I
Sbjct: 347 ELLPASERSQAKSTSQMGDYIAQA 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 3e-06
Identities = 40/252 (15%), Positives = 81/252 (32%), Gaps = 55/252 (21%)
Query: 47 RGLKVQGLGEFNLY-ANVRPCRS----LEGYPTLYDDVD---------VVTIRENTEGEY 92
KVQ +F ++ N++ C S LE L +D I+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 93 SGI-------EHE----IVDGVCNSNYATKWFS--------ERGASVEFNLYANVRPCRS 133
+ + +E ++ V N+ F+ R V L A S
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 134 LEGYPTLYDDVDVVTIRENTE--GEYSGIE-----HEIVDGVVQSIKLITEEASSRVAEF 186
L+ +T E +Y E++ + + +I E +A
Sbjct: 291 LD------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT- 343
Query: 187 AFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPE-VKFEEKYLDTVCLNMVQ 245
++ K N K+T + ++++ + + + + FP L + ++
Sbjct: 344 -WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDV-- 399
Query: 246 DPTQYDVLVMPN 257
+ DV+V+ N
Sbjct: 400 --IKSDVMVVVN 409
Score = 35.6 bits (81), Expect = 0.029
Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 47/185 (25%)
Query: 138 PTLYDDVDVVTIRENTEGEYSGIE-HEIV---DGVVQSIKLIT---EEASSRVAEFAFEY 190
D+ D +++ + S E I+ D V +++L + V +F E
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 191 AKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQY 250
+ N + ++ + R + + E D + N Q +Y
Sbjct: 87 LRINYKFLMSPIKTE-------------QRQPS--MMTRMYIE-QRDRLY-NDNQVFAKY 129
Query: 251 DVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTAL 310
+V Y + L L L P+ N+ ++G L G +GK T +
Sbjct: 130 NV-SRLQPYLKLRQ----AL---LELRPAKNVLIDGVL-----G-----SGK-----TWV 166
Query: 311 LLSAV 315
L
Sbjct: 167 ALDVC 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.003
Identities = 67/352 (19%), Positives = 99/352 (28%), Gaps = 132/352 (37%)
Query: 7 LSLLKLPLQCNTVETISYLTLSELIS---------AQYINTPSISQWS-------WRGLK 50
L L+ P + YL LS IS A Y+ T + ++ +G
Sbjct: 216 LEWLENP---SNTPDKDYL-LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 51 VQGLG--------------EFNLYANVRP---------CRSLEGYPTLYDDVDVVTI-RE 86
G F + +VR R E YP ++ E
Sbjct: 272 GHSQGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 87 NTEGEYS------GIEHEIVD---GVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGY 137
N EG S + E V NS+ G VE +L N + G
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP------AGKQVEISLV-NGAKNLVVSGP 382
Query: 138 P-TLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQS-IKLITEEASSRVAEFAFEYAKTNN 195
P +LY +T+R + + G+ QS I S R +F+ +
Sbjct: 383 PQSLY--GLNLTLR----------KAKAPSGLDQSRIPF-----SERKLKFSNRFL---- 421
Query: 196 RSKVTA-VHKANIMRMSDGLFLRCCRDAAEKFPE------VKFEEKYL-----DTVCLNM 243
V + H S L A++ + V F K + DT
Sbjct: 422 --PVASPFH-------SHLL-----VPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--- 464
Query: 244 VQDPTQYDVLVMPNLYGDILS-----------------DMCAGLVGGLG-LT 277
D + + I+ D G GLG LT
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Score = 33.9 bits (77), Expect = 0.099
Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 59/178 (33%)
Query: 220 RDAAEKFPEVK---------FEEKYLDTVCLNMVQD-PTQYDVLV-------MPNLYGDI 262
D + + F++ Y ++ L++V + P + + Y +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 263 LSDMCA-GLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPT-----ALLLSAVM 316
+ + G + + N F S K L + T AL L
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRS-----E----KGLLSATQFTQPALTLMEKA 1742
Query: 317 MLRHL------DLNT----H-----------ADVIQ-KAALDTIKEGKYRTGDLGGKA 352
L + H ADV+ ++ ++ + YR G A
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV---FYR-GMTMQVA 1796
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE
dehydrogenase, metal-binding, NAD, NADP, oxidoreductase,
PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB:
1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Length = 334
Score = 37.5 bits (88), Expect = 0.005
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 291 SV-HGTAPDIAGKDLANPTAL---LLSAVMMLRH 320
SV HGTA ++A A+ + L A+ M+ +
Sbjct: 298 SVDHGTALELAATGTADVGSFITALNLAIKMINN 331
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine
biosynthesis,oxidoreductase, structural GE PSI; 2.01A
{Pseudomonas aeruginosa}
Length = 328
Score = 36.8 bits (86), Expect = 0.007
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 291 SV-HGTAPDIAGKDLANPTAL---LLSAVMMLRH 320
SV HGTA D+AG + +L L +A M
Sbjct: 293 SVDHGTALDLAGSGRIDSGSLQVALETAYQMAAS 326
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate
biosynthesis, structural GENO PSI-2, protein structure
initiative; 2.30A {Salmonella typhimurium}
Length = 330
Score = 36.4 bits (85), Expect = 0.011
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 291 SV-HGTAPDIAGKDLANPTALL 311
S HGTA DIA A ++
Sbjct: 299 SADHGTAFDIAWTGKAKSESMA 320
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: UNL; 2.63A {Campylobacter jejuni subsp}
Length = 367
Score = 32.0 bits (73), Expect = 0.30
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 291 SV-HGTAPDIAGKDLANPTALLLSAVMMLRHL 321
SV HGTA D A K+ T A +L
Sbjct: 332 SVDHGTAFDKAYKNAKINTKSYFEAAKFAINL 363
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural
genomics, midwest center for structural genomics
structure initiative; 2.00A {Wolinella succinogenes}
Length = 138
Score = 27.9 bits (63), Expect = 2.9
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 178 EASSRVAEFAFEYAKTNNRSKVTAVH 203
EA R A++ + + +T +H
Sbjct: 12 EACERAAQYILDMFGKDADCTLTLIH 37
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology
domains., structural genomics, PSI, protein structure
initiative; 1.70A {Mycobacterium tuberculosis} SCOP:
b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Length = 366
Score = 28.7 bits (65), Expect = 3.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 150 RENTEGEYSGIEHEIVDGVVQ 170
E T GE+S E EIV GV+Q
Sbjct: 119 NERTYGEFSTREGEIVAGVIQ 139
>2z08_A Universal stress protein family; uncharacterized conserved protein,
structural genomics, unknown function, NPPSFA; HET: ATP;
1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A*
2z09_A* 2z3v_A
Length = 137
Score = 27.5 bits (62), Expect = 4.3
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 178 EASSRVAEFAFEYAKTNNRSKVTAVH 203
E + R AE A A+ + +++ VH
Sbjct: 13 EHARRAAEVAKAEAEAHG-ARLIVVH 37
>2asb_A Transcription elongation protein NUSA; protein-RNA complex,
transcription/RNA complex; 1.50A {Mycobacterium
tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB:
2atw_A
Length = 251
Score = 28.0 bits (63), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 155 GEYSGIEHEIVDGVVQ 170
GE+S E EIV GV+Q
Sbjct: 1 GEFSTREGEIVAGVIQ 16
>1hh2_P NUSA, N utilization substance protein A; transcription regulation,
termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5
d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Length = 344
Score = 27.4 bits (62), Expect = 6.9
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 150 RENTEGEYSGIEHEIVDGVVQ 170
+E +YS ++ + V
Sbjct: 123 KEKQFEKYSELKGTVTTAEVI 143
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal
stress protein, unknown function; HET: ATP; 2.90A
{Mycobacterium tuberculosis} PDB: 2jax_A*
Length = 309
Score = 26.9 bits (60), Expect = 9.7
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 143 DVDVVTIRENTEGEYSGIEHEI---VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKV 199
VV I + + + VDG AS AF+ A +
Sbjct: 153 HCPVVIIHDEDSVMPHPQQAPVLVGVDG---------SSASELATAIAFDEASR-RNVDL 202
Query: 200 TAVH 203
A+H
Sbjct: 203 VALH 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.396
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,551,037
Number of extensions: 336633
Number of successful extensions: 687
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 62
Length of query: 364
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,049,298
Effective search space: 1089261162
Effective search space used: 1089261162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)