RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8787
(364 letters)
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 241 bits (616), Expect = 5e-77
Identities = 94/310 (30%), Positives = 137/310 (44%), Gaps = 66/310 (21%)
Query: 121 EFNLYANVRPCRSLEGYPT---LYDDVDVVTIRENTEGEYSGIEHEIVDGVVQ------- 170
E +L+ +RP R G P+ +D D+V RENTE Y+GIE+ VQ
Sbjct: 112 ELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQ 171
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK ++EE +SR+ A +YA + R VT VHK NIM+ ++G
Sbjct: 172 NELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGA 231
Query: 215 FLRCCRD---------------------------------AAEKFPEVKFEEKYLDTVCL 241
F + AE ++ ++ D
Sbjct: 232 FKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQ 291
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDI 299
++ P ++DV+ NL GD +SD A VGG+G+ P NI A+FE+ HGTAP
Sbjct: 292 QILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKY 351
Query: 300 AGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGK-----YRTGDLGGKAKC 354
AG D NP++++LS V++L HL N AD++ K+ TI R D + KC
Sbjct: 352 AGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASKVVTYDFARLMDGATEVKC 411
Query: 355 SEFTNEICSK 364
SEF E+
Sbjct: 412 SEFGEELIKN 421
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 235 bits (600), Expect = 8e-75
Identities = 103/351 (29%), Positives = 147/351 (41%), Gaps = 62/351 (17%)
Query: 76 YDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATK-------WFSERGASV----EFNL 124
+ ++ G+ + E +D + A K R +V E +L
Sbjct: 65 WMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDL 124
Query: 125 YANVRPCRSLEGYPT---LYDDVDVVTIRENTEGEYSGIEHEIVDGVVQ----------- 170
Y +RP R +G P+ + D+V REN+E Y+GIE + +
Sbjct: 125 YICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMG 184
Query: 171 ------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRC 218
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G F
Sbjct: 185 VKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDW 244
Query: 219 CRDAAEKF--------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNL 258
A + E+ ++ D ++ P +YDV+ NL
Sbjct: 245 GYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNL 304
Query: 259 YGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMML 318
GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA MML
Sbjct: 305 NGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMML 364
Query: 319 RHLDLNTHADVIQKAALDTIKEGK-----YRTGDLGGKAKCSEFTNEICSK 364
RH+ AD+I K I R D KCSEF + I
Sbjct: 365 RHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAIIEN 415
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 226 bits (578), Expect = 4e-72
Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 17/257 (6%)
Query: 121 EFNLYANVRPCRSLEGYPT--------LYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSI 172
NLYAN+RP + + VD+VT+RE + G Y G + +
Sbjct: 105 MLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDT 164
Query: 173 KLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFE 232
+ + R+A AFE AK N R KVT+V KAN++ S L+ + + A ++P+V+
Sbjct: 165 MIYDRKTVERIARTAFEIAK-NRRKKVTSVDKANVL-YSSMLWRKVVNEVAREYPDVELT 222
Query: 233 EKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESV 292
Y+D + ++ P+Q+DV++ N++GDILSD A L G LGL PS + G +E
Sbjct: 223 HIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNL-YEPA 281
Query: 293 HGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLG-- 349
G+APDIAGK++ANP A +LS MML H + A I++A I+EG YRT D+
Sbjct: 282 GGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEG-YRTRDIAED 340
Query: 350 --GKAKCSEFTNEICSK 364
S+ + IC K
Sbjct: 341 PEKAVSTSQMGDLICKK 357
Score = 53.2 bits (127), Expect = 2e-08
Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 12/162 (7%)
Query: 31 ISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPT--------LYDDVDVV 82
+ + + G + NLYAN+RP + + VD+V
Sbjct: 80 VGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLV 139
Query: 83 TIRENTEGEYSGIEHEIVDGV-CNSNYATKWFSERGASVEFNLYANVRPCR-SLEGYPTL 140
T+RE + G Y G + + ++ + ER A F + N R S++ L
Sbjct: 140 TVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVL 199
Query: 141 YDDVDVVTIRENTEGEYSGIE--HEIVDGVVQSIKLITEEAS 180
Y + + EY +E H VD + L +
Sbjct: 200 YSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFD 241
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 216 bits (550), Expect = 4e-68
Identities = 89/252 (35%), Positives = 135/252 (53%), Gaps = 12/252 (4%)
Query: 121 EFNLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIK 173
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 96 SQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTE 155
Query: 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE 233
++ RVA AFE A+ R V +V KAN++ + + + + +P+V E
Sbjct: 156 RYSKPEVERVARVAFEVAR-KRRKHVVSVDKANVLEVGEFWR-KTVEEVGRGYPDVALEH 213
Query: 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVH 293
+Y+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VH
Sbjct: 214 QYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVH 273
Query: 294 GTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLGGKA 352
G+APDIAGK +ANPTA +LSA MML H L A ++ A + E DLGG A
Sbjct: 274 GSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLET--PPPDLGGSA 331
Query: 353 KCSEFTNEICSK 364
FT +
Sbjct: 332 GTEAFTATVLRH 343
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Salmonella typhimurium [TaxId: 90371]}
Length = 363
Score = 213 bits (543), Expect = 7e-67
Identities = 93/272 (34%), Positives = 144/272 (52%), Gaps = 24/272 (8%)
Query: 114 SERGASV----EFNLYANVRPCRSLEGYPTL--------YDDVDVVTIRENTEGEYSGIE 161
ERGA + F L++N+RP + +G + D++ +RE T G Y G
Sbjct: 90 PERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQP 149
Query: 162 HEIVDG----VVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLR 217
++ R+A AFE A+ R KVT++ KAN+++ S L+
Sbjct: 150 KGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKRRR-KVTSIDKANVLQ-SSILWRE 207
Query: 218 CCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLT 277
D A+ +P+V+ Y+D + +++DP+Q+DVL+ NL+GDILSD CA + G +G+
Sbjct: 208 IVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGML 267
Query: 278 PSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAAL 335
PS ++ G L+E G+APDIAGK++ANP A +LS ++LR+ LD N A I++A
Sbjct: 268 PSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAIN 327
Query: 336 DTIKEGKYRTGDLGGKAK---CSEFTNEICSK 364
++EG RTGDL A E + I
Sbjct: 328 RALEEG-VRTGDLARGAAAVSTDEMGDIIARY 358
Score = 43.2 bits (101), Expect = 3e-05
Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 16/144 (11%)
Query: 45 SWRGLKVQGLGEFNLYANVRPCRSLEGYPTL--------YDDVDVVTIRENTEGEYSGIE 96
RG + F L++N+RP + +G + D++ +RE T G Y G
Sbjct: 90 PERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQP 149
Query: 97 HEIVDGVCNSNYATKWFSERGASVEFNLYA------NVRPCRSLEGYPTLYDDVDVVTIR 150
R A R S++ L + I
Sbjct: 150 KGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIV 209
Query: 151 ENTEGEYSGIE--HEIVDGVVQSI 172
+ Y +E H +D +
Sbjct: 210 NDVAKTYPDVELAHMYIDNATMQL 233
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 209 bits (533), Expect = 2e-65
Identities = 80/260 (30%), Positives = 130/260 (50%), Gaps = 19/260 (7%)
Query: 121 EFNLYANVRPCRSLEGY-------PTLYDDVDVVTIRENTEGEYSGIEHEIVDG----VV 169
+LYAN+RP + P L DVD++ +RE T Y G +
Sbjct: 97 GLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRG 156
Query: 170 QSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEV 229
+ + E+ R+A AF A R ++ +V KAN++ + L+ + A +P+V
Sbjct: 157 FNTMVYDEDEIRRIAHVAF-RAAQGRRKQLCSVDKANVLETTR-LWREVVTEVARDYPDV 214
Query: 230 KFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALF 289
+ Y+D + +++ P Q+DVL+ N++GDILSD + L G +G+ PS ++G A++
Sbjct: 215 RLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMY 274
Query: 290 ESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDL 348
E +HG+APDIAG+D ANP A +LS MMLRH L+ A ++ A + +G RT D+
Sbjct: 275 EPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRTADI 333
Query: 349 GGKAK----CSEFTNEICSK 364
+ +
Sbjct: 334 AAPGTPVIGTKAMGAAVVNA 353
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
{Bacillus coagulans [TaxId: 1398]}
Length = 356
Score = 199 bits (506), Expect = 2e-61
Identities = 87/260 (33%), Positives = 140/260 (53%), Gaps = 19/260 (7%)
Query: 121 EFNLYANVRPCRSLEGY-------PTLYDDVDVVTIRENTEGEYSGIEHEIV---DGVVQ 170
E L+AN+RP ++ ++VD+V +RE T G Y G E + V
Sbjct: 98 EMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVV 157
Query: 171 SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVK 230
T E R+ E AF+ A+ + K+ +V KAN++ S ++ + A+K+P+V+
Sbjct: 158 DTLAYTREEIERIIEKAFQLAQIRRK-KLASVDKANVLE-SSRMWREIAEETAKKYPDVE 215
Query: 231 FEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN-GALF 289
+D+ + ++ +P Q+DV+V N++GDILSD + + G LG+ PS ++ + ++
Sbjct: 216 LSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMY 275
Query: 290 ESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDL 348
E VHG+APDIAG+ ANP +LSA +MLR+ L A I+KA D +++G Y TGDL
Sbjct: 276 EPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDG-YCTGDL 334
Query: 349 ----GGKAKCSEFTNEICSK 364
G E T+ + K
Sbjct: 335 QVANGKVVSTIELTDRLIEK 354
Score = 49.0 bits (116), Expect = 4e-07
Identities = 33/165 (20%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 36 INTPSISQWSWRGLKVQGLG----EFNLYANVRPCRSLEGY-------PTLYDDVDVVTI 84
+ P +GL E L+AN+RP ++ ++VD+V +
Sbjct: 74 VGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIV 133
Query: 85 RENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCR-----SLEGYPT 139
RE T G Y G E N T ++ + R S++
Sbjct: 134 RELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANV 193
Query: 140 LYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVA 184
L I E T +Y +E + S++LI V
Sbjct: 194 LESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVI 238
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 192 bits (488), Expect = 4e-59
Identities = 109/268 (40%), Positives = 151/268 (56%), Gaps = 10/268 (3%)
Query: 104 CNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHE 163
+ +++YAN+RP +S+ G T Y +VD++ +RENTE Y G EH
Sbjct: 70 KGPVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHI 129
Query: 164 IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA 223
+ DGV +K+IT AS R+A+ +A R KVT VHKAN+MR++DGLF CR
Sbjct: 130 VSDGVAVGMKIITRFASERIAKVGLNFAL-RRRKKVTCVHKANVMRITDGLFAEACRSV- 187
Query: 224 EKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIG 283
+V++ E Y+D N+V++P +DV+V N+YGDILSD + + G LG+ PS NIG
Sbjct: 188 -LKGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIG 246
Query: 284 LNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHL-------DLNTHADVIQKAALD 336
ALFE VHG A DIAGK++ NPTA LLS MM + + ++ A
Sbjct: 247 DKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYL 306
Query: 337 TIKEGKYRTGDLGGKAKCSEFTNEICSK 364
KE K T D+GG A + NEI +K
Sbjct: 307 VYKERKALTPDVGGNATTDDLINEIYNK 334
Score = 47.5 bits (112), Expect = 1e-06
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 56 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEH 97
+++YAN+RP +S+ G T Y +VD++ +RENTE Y G EH
Sbjct: 87 IYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEH 128
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 337
Score = 190 bits (483), Expect = 3e-58
Identities = 84/254 (33%), Positives = 135/254 (53%), Gaps = 17/254 (6%)
Query: 121 EFNLYANVRPCRSLEGYPT---LYDDVDVVTIRENTEGEYSGIEHEIVDG----VVQSIK 173
E + + N+RP R G + +D V +RE TEG Y+G I G V +
Sbjct: 90 ELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVS 149
Query: 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE 233
+ T RV AFE A+ R +T VHK N++ + GL+LR + E +P+V+
Sbjct: 150 VNTAFGVRRVVADAFERAR-RRRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAY 208
Query: 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGL---NGALFE 290
+++D ++M+ DP ++DV+V NL+GDI++D+ A + GG+GL SGNI N ++FE
Sbjct: 209 QHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFE 268
Query: 291 SVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG 350
VHG+APDIAG+ +A+PTA ++S ++L HL + A + +A +
Sbjct: 269 PVHGSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLAT------RGSE 322
Query: 351 KAKCSEFTNEICSK 364
+ S+ I +
Sbjct: 323 RLATSDVGERIAAA 336
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 413
Score = 173 bits (440), Expect = 4e-51
Identities = 52/304 (17%), Positives = 85/304 (27%), Gaps = 61/304 (20%)
Query: 121 EFNLYANVRPCRSLEGYPTLY-DDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITE-- 177
P + + R +Y + + I +
Sbjct: 103 ILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162
Query: 178 -----------------------EASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
+ S + + + K I++ DG
Sbjct: 163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGR 222
Query: 215 FLRCCRDAAEKFPEVKFE------EKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCA 268
F ++ EK + F+ E L + V + V N GD+ SD+ A
Sbjct: 223 FKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILA 282
Query: 269 GLVGGLGLTPSGNIGLNGA--LFESVHGTAP------DIAGKDLANPTALLLSAVMMLRH 320
G LGL S + +G E+ HGT NP A + + L H
Sbjct: 283 QGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEH 342
Query: 321 L-------DLNTHADVIQKAALDTIKEGKYRTGDLGGKAK-------------CSEFTNE 360
DL A ++K ++T++ G T DL G S+F +
Sbjct: 343 RGKLDGNQDLIRFAQTLEKVCVETVESG-AMTKDLAGCIHGLSNVKLNEHFLNTSDFLDT 401
Query: 361 ICSK 364
I S
Sbjct: 402 IKSN 405
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 414
Score = 172 bits (436), Expect = 2e-50
Identities = 43/304 (14%), Positives = 84/304 (27%), Gaps = 61/304 (20%)
Query: 121 EFNLYANVRPCRSLEGYPTLY-DDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEA 179
+ ++ R +Y + + I +
Sbjct: 102 ILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDG 161
Query: 180 S--------------------------SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDG 213
+ + + + K I++ DG
Sbjct: 162 TQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDG 221
Query: 214 LFLRCCRDAAEKFPEVKFE------EKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMC 267
F ++ +K + +FE E L + + N GD+ SD
Sbjct: 222 RFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSV 281
Query: 268 AGLVGGLGLTPSGNIGLN--GALFESVHGTAPDI------AGKDLANPTALLLSAVMMLR 319
A G LG+ S + + E+ HGT + NP A + + L
Sbjct: 282 AQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLA 341
Query: 320 HL-------DLNTHADVIQKAALDTIKEGKYRTGDLGGKAK------------CSEFTNE 360
H +L A+ +++ +++TI+ G + T DL K EF ++
Sbjct: 342 HRAKLDNNKELAFFANALEEVSIETIEAG-FMTKDLAACIKGLPNVQRSDYLNTFEFMDK 400
Query: 361 ICSK 364
+
Sbjct: 401 LGEN 404
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase
PdxA {Escherichia coli [TaxId: 562]}
Length = 329
Score = 39.1 bits (90), Expect = 5e-04
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 256 PNLYGDILSDMCAGLVGGLGLTPSGNI--GLNGALFESV-HGTAPDIAGKDLANPTALLL 312
+ + D ++ G NI GL + SV HGTA ++AG+ A+ + +
Sbjct: 258 ADAVLAMYHDQGLPVLKYQGFGRGVNITLGLP-FIRTSVDHGTALELAGRGKADVGSFIT 316
Query: 313 S---AVMMLRH 320
+ A+ M+ +
Sbjct: 317 ALNLAIKMIVN 327
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.8 bits (59), Expect = 2.6
Identities = 6/60 (10%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSD-GLFLRCCRDAAEKFPEVKFEEK 234
E ++ A E + + ++ H + G ++ ++ ++ V + +
Sbjct: 35 CTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRR 94
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein
AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 171
Score = 25.6 bits (55), Expect = 6.9
Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 7/135 (5%)
Query: 165 VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRS--KVTAVHKANIMRMS----DGLFLRC 218
V+ + R E+ E +N S K+ +H + D ++
Sbjct: 8 VNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASP 67
Query: 219 CRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGL-GLT 277
+ L+ + + + D++ + +
Sbjct: 68 EDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVG 127
Query: 278 PSGNIGLNGALFESV 292
G +V
Sbjct: 128 SRGLGRFQKVFVGTV 142
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
[TaxId: 4120]}
Length = 498
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 172 IKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRD 221
I + E A R A+ R ++ ++MS +LR D
Sbjct: 377 IDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYLRLSDD 426
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.396
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,327,761
Number of extensions: 60430
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 22
Length of query: 364
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,226,816
Effective search space: 341054848
Effective search space used: 341054848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)