BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8789
(851 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 171/296 (57%), Gaps = 61/296 (20%)
Query: 498 HFGEKWFHGRLSGGRAE---AEDLLRRY---SHLGDGTFLVRESETFIGDYSLSFWWQGR 551
H EKWFHG+L GR AE LL Y + DG+FLVRESETF+GDY+LSFW G+
Sbjct: 1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 552 VNHCRIRSKPESG--QFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHE 609
V HCRI S+ ++G +F+L + FDSLY LI+HY+ LR EF + L EPVPQ N HE
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHE 120
Query: 610 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATR 669
KEWYH + TR+QAE +L RVP DGAFLVR NS
Sbjct: 121 SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS----------------------- 157
Query: 670 SQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESL 729
Y ISFRAE KIKHCR++ EG+ +G ++F+SL
Sbjct: 158 ---------------------------YAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSL 190
Query: 730 VELISYYERHPLYKKIELWYPVSEDLIQRMG-LEPDDNTV--SGTPGYMDPASFTP 782
V+LISYYE+HPLY+K++L YP++E+ ++++G EPD + PG+ A+ P
Sbjct: 191 VDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPDFGALFEGRNPGFXVEANPMP 246
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 61/87 (70%), Gaps = 5/87 (5%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLG 491
AE KIKHCR++ EG+ +G ++F+SLV+LISYYE+HPLY+K++L YP++E+ ++++G
Sbjct: 164 AEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTA 223
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDL 518
P+ FG F GR G EA +
Sbjct: 224 EPD----FG-ALFEGRNPGFXVEANPM 245
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 22/160 (13%)
Query: 435 KIKHCRIRVEG-----RLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMG 489
K++HCRI + + F+SL +LI++Y++ PL + R+
Sbjct: 60 KVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLR---------CNEFEMRLS 110
Query: 490 LGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ 549
VP H ++W+H L+ RA+AE +L R DG FLVR+ Y++SF +
Sbjct: 111 EPVPQTNAHESKEWYHASLT--RAQAEHMLMRVPR--DGAFLVRKRNE-PNSYAISFRAE 165
Query: 550 GRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ HCR++ + GQ ++ S FDSL LIS+Y + L
Sbjct: 166 GKIKHCRVQ---QEGQTVMLGNSEFDSLVDLISYYEKHPL 202
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 171/296 (57%), Gaps = 61/296 (20%)
Query: 498 HFGEKWFHGRLSGGRAE---AEDLLRRY---SHLGDGTFLVRESETFIGDYSLSFWWQGR 551
H EKWFHG+L GR AE LL Y + DG+FLVRESETF+GDY+LSFW G+
Sbjct: 1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 552 VNHCRIRSKPESG--QFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHE 609
V HCRI S+ ++G +F+L + FDSLY LI+HY+ LR EF + L EPVPQ N HE
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHE 120
Query: 610 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATR 669
KEWYH + TR+QAE +L RVP DGAFLVR NS
Sbjct: 121 SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS----------------------- 157
Query: 670 SQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESL 729
Y ISFRAE KIKHCR++ EG+ +G ++F+SL
Sbjct: 158 ---------------------------YAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSL 190
Query: 730 VELISYYERHPLYKKIELWYPVSEDLIQRMG-LEPDDNTV--SGTPGYMDPASFTP 782
V+LISYYE+HPLY+K++L YP++E+ ++++G EPD + PG+ A+ P
Sbjct: 191 VDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPDYGALYEGRNPGFYVEANPMP 246
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 61/87 (70%), Gaps = 5/87 (5%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLG 491
AE KIKHCR++ EG+ +G ++F+SLV+LISYYE+HPLY+K++L YP++E+ ++++G
Sbjct: 164 AEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTA 223
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDL 518
P+ +G + GR G EA +
Sbjct: 224 EPD----YG-ALYEGRNPGFYVEANPM 245
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 22/160 (13%)
Query: 435 KIKHCRIRVEG-----RLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMG 489
K++HCRI + + F+SL +LI++Y++ PL + R+
Sbjct: 60 KVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLR---------CNEFEMRLS 110
Query: 490 LGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ 549
VP H ++W+H L+ RA+AE +L R DG FLVR+ Y++SF +
Sbjct: 111 EPVPQTNAHESKEWYHASLT--RAQAEHMLMRVPR--DGAFLVRKRNE-PNSYAISFRAE 165
Query: 550 GRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ HCR++ + GQ ++ S FDSL LIS+Y + L
Sbjct: 166 GKIKHCRVQ---QEGQTVMLGNSEFDSLVDLISYYEKHPL 202
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/276 (46%), Positives = 166/276 (60%), Gaps = 59/276 (21%)
Query: 498 HFGEKWFHGRLSGGRAE---AEDLLRRY---SHLGDGTFLVRESETFIGDYSLSFWWQGR 551
H EKWFHG+L GR AE LL Y + DG+FLVRESETF+GDY+LSFW G+
Sbjct: 1 HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 552 VNHCRIRSKPESG--QFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHE 609
V HCRI S+ ++G +F+L + FDSLY LI+HY+ LR EF + L EPVPQ N HE
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHE 120
Query: 610 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATR 669
KEWYH + TR+QAE +L RVP DGAFLVR +PN
Sbjct: 121 SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN----------EPN-------------- 156
Query: 670 SQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESL 729
SY ISFRAE KIKHCR++ EG+ +G ++F+SL
Sbjct: 157 --------------------------SYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSL 190
Query: 730 VELISYYERHPLYKKIELWYPVSEDLIQRMG-LEPD 764
V+LISYYE+HPLY+K++L YP++E+ ++++G EPD
Sbjct: 191 VDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPD 226
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 52/63 (82%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLG 491
AE KIKHCR++ EG+ +G ++F+SLV+LISYYE+HPLY+K++L YP++E+ ++++G
Sbjct: 164 AEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTA 223
Query: 492 VPN 494
P+
Sbjct: 224 EPD 226
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 22/160 (13%)
Query: 435 KIKHCRIRVEG-----RLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMG 489
K++HCRI + + F+SL +LI++Y++ PL + R+
Sbjct: 60 KVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLR---------CNEFEMRLS 110
Query: 490 LGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ 549
VP H ++W+H L+ RA+AE +L R DG FLVR+ Y++SF +
Sbjct: 111 EPVPQTNAHESKEWYHASLT--RAQAEHMLMRVPR--DGAFLVRKRNE-PNSYAISFRAE 165
Query: 550 GRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ HCR++ + GQ ++ S FDSL LIS+Y + L
Sbjct: 166 GKIKHCRVQ---QEGQTVMLGNSEFDSLVDLISYYEKHPL 202
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 6/321 (1%)
Query: 128 VNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDSY 187
+N K++K FL +N ++ R+ F+E D +T+ L +E Y +++ ++
Sbjct: 28 MNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFY-KMLTQRAEIDRAF 86
Query: 188 SHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYFTFMEFID 247
+ +T++ L FL +Q E + Y E Q T F+
Sbjct: 87 EEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQR-QMTKDGFLM 145
Query: 248 FLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGC 307
+L S + + ++QDM +PLSHY ++SSHNTYL DQ + SS EAY+R L +GC
Sbjct: 146 YLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGC 205
Query: 308 RCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNCSLPQ 367
RC+ELDCWDGP+ PI+YHG+T T+KI F DV++ IRD+AF+ S YPVILS+E++CSL Q
Sbjct: 206 RCLELDCWDGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQ 265
Query: 368 QRVMAQIMLDIFKDMLLIHPVEKNETVLPSPHQ----LRGKILLKHKKLPEGSDEQTPCA 423
QRVMA+ + I +LL P++ T LPSP Q + K LP G + +
Sbjct: 266 QRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGLLPAGGENGSEAT 325
Query: 424 IAKDEGKLAEDKIKHCRIRVE 444
DE + AE + + R +V+
Sbjct: 326 DVSDEVEAAEMEDEAVRSQVQ 346
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 6/321 (1%)
Query: 128 VNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDSY 187
+N K++K FL +N ++ R+ F+E D +T+ L +E Y +++ ++
Sbjct: 26 MNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFY-KMLTQRAEIDRAF 84
Query: 188 SHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYFTFMEFID 247
+ +T++ L FL +Q E + Y E Q T F+
Sbjct: 85 EEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQR-QMTKDGFLM 143
Query: 248 FLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGC 307
+L S + + ++QDM +PLSHY ++SSHNTYL DQ + SS EAY+R L +GC
Sbjct: 144 YLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGC 203
Query: 308 RCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNCSLPQ 367
RC+ELDCWDGP+ PI+YHG+T T+KI F DV++ IRD+AF+ S YPVILS+E++CSL Q
Sbjct: 204 RCLELDCWDGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQ 263
Query: 368 QRVMAQIMLDIFKDMLLIHPVEKNETVLPSPHQ----LRGKILLKHKKLPEGSDEQTPCA 423
QRVMA+ + I +LL P++ T LPSP Q + K LP G + +
Sbjct: 264 QRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGLLPAGGENGSEAT 323
Query: 424 IAKDEGKLAEDKIKHCRIRVE 444
DE + AE + + R +V+
Sbjct: 324 DVSDEVEAAEMEDEAVRSQVQ 344
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 152/268 (56%), Gaps = 21/268 (7%)
Query: 180 EQMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNER-------EVSRHMRDYLQDEQ 232
+++FT S+++ +T LT F+ ++Q ++ +N + + + D +
Sbjct: 222 DEIFT---SYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSG 278
Query: 233 RNVQEPYFTFMEFIDFLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSS 292
N Q + + FL +N + Q +H DMT+PL+HYFINSSHNTYLT QFS
Sbjct: 279 INAQRGQLSPEGMVWFLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNTYLTAGQFSG 338
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDG--PDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFET 350
SS E Y + L GCRC+ELDCW G PD PI+ HG T+TT I FK+ ++ I + AF+T
Sbjct: 339 LSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAESAFKT 398
Query: 351 SKYPVILSIEDNCSLP-QQRVMAQIMLDIFKDMLLIHPVE----KNETVLPSPHQLRGKI 405
S YP+ILS E++ P QQ MA+ IF DMLL P+E K LPSP LRGKI
Sbjct: 399 SPYPIILSFENHVDSPRQQAKMAEYCRTIFGDMLLTEPLEKFPLKPGVPLPSPEDLRGKI 458
Query: 406 LLKHKKLPEGSDEQTPCAIAKDEGKLAE 433
L+K+KK + P + +KD G AE
Sbjct: 459 LIKNKK----NQFSGPTSSSKDTGGEAE 482
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 4/184 (2%)
Query: 248 FLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGC 307
FL ++N L + +M L+ Y+INSSHNTYLTG Q + +SS E Y + L GC
Sbjct: 305 FLMCEENNLTPMHRLDLGANMKLTLAAYYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGC 364
Query: 308 RCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNCSLPQ 367
RC+ELDCWDG DG PI+ HG T+ T++ FKDVV I + AF+ S YPVILS E++CS+ Q
Sbjct: 365 RCLELDCWDGKDGEPIITHGFTMCTEVLFKDVVYAIAESAFKVSDYPVILSFENHCSVAQ 424
Query: 368 QRVMAQIMLDIFKDMLLIHPVE----KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCA 423
Q+++AQ + F ++LL P++ K LP+P+ LR KIL+K+KK+ +G+ + A
Sbjct: 425 QKLLAQYCNEAFGELLLDKPIDGHPLKPGVPLPTPYDLRKKILIKNKKMHKGTGDDEELA 484
Query: 424 IAKD 427
D
Sbjct: 485 GLTD 488
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 4/159 (2%)
Query: 248 FLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGC 307
FL ++N L + +M L+ Y+INSSHNTYLTG Q + +SS E Y + L GC
Sbjct: 305 FLMCEENNLTPMHRLDLGANMKLSLAAYYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGC 364
Query: 308 RCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNCSLPQ 367
RC+ELDCWDG DG PI+ HG T+ T+++FKDVV I + AF+ S+YPVILS E++CS+PQ
Sbjct: 365 RCLELDCWDGKDGEPIITHGFTMCTEVQFKDVVHAIAECAFKVSEYPVILSFENHCSVPQ 424
Query: 368 QRVMAQIMLDIFKDMLLIHPVE----KNETVLPSPHQLR 402
Q+++AQ + F ++LL +P++ K LP+P+ LR
Sbjct: 425 QKLLAQYCHEAFGELLLDNPIDGHPLKPGVPLPTPYDLR 463
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 16/287 (5%)
Query: 139 RVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDSYSHYSSDGQTVT 198
RV + + L+ F ++ + +E + + F N++ + + +T
Sbjct: 184 RVETALESCGLK--FNRSESIRPDEFSLEIFERFLNKLCLRPDIDKILLEIGAKGKPYLT 241
Query: 199 ASELTNFLIREQNETNVNE-------REVSRHMRDYLQDEQRNVQEPYFTFMEFIDFLFS 251
+L +F+ ++Q + +NE +R + + + Q+ ++ + F +L
Sbjct: 242 LEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYLGG 301
Query: 252 KQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGCRCIE 311
++N + + + DMT+PLS YFINSSHNTYLT Q + SS E Y + L GCRC+E
Sbjct: 302 EENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRCVE 361
Query: 312 LDCWDG--PDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNC-SLPQQ 368
LD W G P+ P + HG T+TT++ +DV++ I + AF+TS YPVILS E++ S QQ
Sbjct: 362 LDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQ 421
Query: 369 RVMAQIMLDIFKDMLLIHPVEKNETV----LPSPHQLRGKILLKHKK 411
MA+ IF D LLI P++K LPSP L G+IL+K+KK
Sbjct: 422 AKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNKK 468
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 133/229 (58%), Gaps = 14/229 (6%)
Query: 197 VTASELTNFLIREQNETNVNE-------REVSRHMRDYLQDEQRNVQEPYFTFMEFIDFL 249
+T +L +F+ ++Q + +NE +R + + + Q+ ++ + F +L
Sbjct: 242 LTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYL 301
Query: 250 FSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGCRC 309
++N + + + DMT+PLS YFINSSHNTYLT Q + SS E Y + L GCRC
Sbjct: 302 GGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRC 361
Query: 310 IELDCWDG--PDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNC-SLP 366
+ELD W G P+ P + HG T+TT++ +DV++ I + AF+TS YPVILS E++ S
Sbjct: 362 VELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAK 421
Query: 367 QQRVMAQIMLDIFKDMLLIHPVEKNETV----LPSPHQLRGKILLKHKK 411
QQ MA+ IF D LLI P++K LPSP L G+IL+K+KK
Sbjct: 422 QQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNKK 470
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
Query: 654 PNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR 713
P HE KEWYH + TR+QAE +L RVP DGAFLVR N+ +SY ISFRAE KIKHCR++
Sbjct: 3 PGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQ 61
Query: 714 VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSED 754
EG+ +G ++F+SLV+LISYYE+HPLY+K++L YP++E+
Sbjct: 62 QEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEE 102
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 45/52 (86%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSED 483
AE KIKHCR++ EG+ +G ++F+SLV+LISYYE+HPLY+K++L YP++E+
Sbjct: 51 AEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEE 102
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 497 LHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
+H ++W+H L+ RA+AE +L R DG FLVR+ Y++SF +G++ HCR
Sbjct: 5 IHESKEWYHASLT--RAQAEHMLMRVPR--DGAFLVRKRNE-PNSYAISFRAEGKIKHCR 59
Query: 557 IRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
++ + GQ ++ S FDSL LIS+Y + L + + L+ P+ + N
Sbjct: 60 VQ---QEGQTVMLGNSEFDSLVDLISYYEKHPLYRK---MKLRYPINEEN 103
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 86/117 (73%), Gaps = 2/117 (1%)
Query: 643 NDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR 702
+ SS +PVP PN HE K WY+ +R +AED+L R+P DGAFL+R E + SY I+FR
Sbjct: 2 SSGSSGDPVPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTD-SYAITFR 60
Query: 703 AEDKIKHCRIRVEGRLYTIGTTQ-FESLVELISYYERHPLYKKIELWYPVSEDLIQR 758
A K+KHCRI +GR + +GT+ FESLVEL+SYYE+H LY+K+ L YPV+ +L++R
Sbjct: 61 ARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYRKMRLRYPVTPELLER 117
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQ-FESLVELISYYERHPLYKKIELWYPVSEDLIQR 487
A K+KHCRI +GR + +GT+ FESLVEL+SYYE+H LY+K+ L YPV+ +L++R
Sbjct: 61 ARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYRKMRLRYPVTPELLER 117
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR 551
VPN H + W++ RLS R EAED+L R DG FL+R+ E Y+++F +G+
Sbjct: 10 VPNPNPHESKPWYYDRLS--RGEAEDMLMRIPR--DGAFLIRKREG-TDSYAITFRARGK 64
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL 589
V HCRI + F L +YF+SL L+S+Y + L
Sbjct: 65 VKHCRINR--DGRHFVLGTSAYFESLVELVSYYEKHAL 100
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 81/120 (67%), Gaps = 6/120 (5%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRY---SHLGDGTFLVRESETFIGDYSLSFWW 548
P ELHFGEKWFH ++ R AE LL+ Y + DGTFLVRESETF DY+LSFW
Sbjct: 13 TPPTELHFGEKWFHKKVES-RTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWR 71
Query: 549 QGRVNHCRIRSKPESG--QFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
GRV HCRIRS E+G ++YL + F+S+Y+LI HYR HLR EF + L +PVP PN
Sbjct: 72 SGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVPNPN 131
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 643 NDNSSYEPV---PQPNQHEDKEWYHPTA-TRSQAEDLLRRVPS-----DGAFLVRPSEND 693
+ SS EPV P H ++W+H +R+ AE LL+ + DG FLVR SE
Sbjct: 2 SSGSSGEPVQDTPPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETF 61
Query: 694 NSSYVISFRAEDKIKHCRIRVE-----GRLYTIGTTQFESLVELISYY-ERHPLYKKIEL 747
+ Y +SF +++HCRIR + Y F S+ LI +Y E H + EL
Sbjct: 62 PNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFEL 121
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 45/54 (83%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
VKAL+DY+A+ +DEL+F K AII NV + +GGWWRGDYGGK+ WFPSNYV E+
Sbjct: 9 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 62
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 45/55 (81%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
VKAL+DY+A+ +DEL+F K AII NV + EGGWWRGDYGGK+ WFPSNYV E+
Sbjct: 8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 45/54 (83%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
VKAL+DY+A+ +DEL+F K AII NV + +GGWWRGDYGGK+ WFPSNYV E+
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
TVKALYDY+A+ DEL+F + A+I NV++ GGWW+GDYG + +FPSNYV +I
Sbjct: 9 TVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS 64
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 50/248 (20%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
+WFH ++G EAE+LL + DG+FL R S++ GD +LS G V H +I++
Sbjct: 5 RWFHPNITG--VEAENLL--LTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG 60
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEF---LITLQEPVPQPNQHEDKEWYHPTA 618
+ Y EK F +L L+ +Y +H + +E +I L+ P+ + ++ W+H
Sbjct: 61 DYYDLYGGEK--FATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSER-WFHGHL 117
Query: 619 TRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRR 678
+ +AE LL G+FLVR S++
Sbjct: 118 SGKEAEKLLTEKGKHGSFLVRESQSH---------------------------------- 143
Query: 679 VPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQ-FESLVELISYYE 737
P D VR ++ S + K+ H IR + Y +G + F+SL +L+ +Y+
Sbjct: 144 -PGDFVLSVRTGDDKGESN----DGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYK 198
Query: 738 RHPLYKKI 745
++P+ + +
Sbjct: 199 KNPMVETL 206
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLY 719
+ W+HP T +AE+LL DG+FL RPS+++ +S R + H +I+ G Y
Sbjct: 4 RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYY 63
Query: 720 TI-GTTQFESLVELISYY-ERHPLYKK-----IELWYPVS 752
+ G +F +L EL+ YY E H K+ IEL YP++
Sbjct: 64 DLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN 103
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 37/185 (20%)
Query: 436 IKHCRIRVEGRLYTI-GTTQFESLVELISYY-ERHPLYKK-----IELWYPVSEDLIQRM 488
+ H +I+ G Y + G +F +L EL+ YY E H K+ IEL YP++
Sbjct: 51 VTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN------- 103
Query: 489 GLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW- 547
P E +WFHG LSG EAE LL G+FLVRES++ GD+ LS
Sbjct: 104 -CADPTSE-----RWFHGHLSG--KEAEKLLTEKGK--HGSFLVRESQSHPGDFVLSVRT 153
Query: 548 ---------WQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTN-HLRSQEFLIT 597
+ +V H IR + ++ + FDSL L+ HY+ N + + ++
Sbjct: 154 GDDKGESNDGKSKVTHVMIRC--QELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQ 211
Query: 598 LQEPV 602
L++P+
Sbjct: 212 LKQPL 216
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 60 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 119
Query: 721 IGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPGYMDPASF 780
+ +F SL EL+ Y+ + + +++ E + Q+ P Y
Sbjct: 120 LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ-------------PTY------ 160
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V+AL+D+ + D EL F + I + ++ WW+G G+ FP NYV +
Sbjct: 161 ------VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQ-TGMFPRNYVTPV 213
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 60 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 115
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 116 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 156
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVT-RAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
A YD++A DDELSF + I+ + + W++ + GK + P NY+ E++P
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKD-GFIPKNYI-EMKP 57
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr
Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex With
Rvipyfvplnr Peptide
Length = 109
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLY 719
+ W+HP T +AE+LL DG+FL RPS+++ + +S R + H +I+ G Y
Sbjct: 7 RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYY 66
Query: 720 TI-GTTQFESLVELISYY-ERHPLYKK-----IELWYPVS 752
+ G +F +L EL+ YY E H K+ IEL YP++
Sbjct: 67 DLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN 106
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
+WFH ++G EAE+LL + DG+FL R S++ GD++LS G V H +I++
Sbjct: 8 RWFHPNITG--VEAENLL--LTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG 63
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQE 593
+ Y EK F +L L+ +Y +H + +E
Sbjct: 64 DYYDLYGGEK--FATLAELVQYYMEHHGQLKE 93
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLY 719
+ W+HP T +AE+LL DG+FL RPS+++ + +S R + H +I+ G Y
Sbjct: 2 RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYY 61
Query: 720 TI-GTTQFESLVELISYY-ERHPLYKK-----IELWYPVS 752
+ G +F +L EL+ YY E H K+ IEL YP++
Sbjct: 62 DLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN 101
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
+WFH ++G EAE+LL + DG+FL R S++ GD++LS G V H +I++
Sbjct: 3 RWFHPNITG--VEAENLL--LTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG 58
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQE 593
+ Y EK F +L L+ +Y +H + +E
Sbjct: 59 DYYDLYGGEK--FATLAELVQYYMEHHGQLKE 88
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 491 GVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG 550
G P + L W+HG +S R+ AE LL S L +G+FLVRESE+ G S+S ++G
Sbjct: 7 GTPVNSLE-KHSWYHGPVS--RSAAEYLL---SSLINGSFLVRESESSPGQLSISLRYEG 60
Query: 551 RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
RV H RI + + G+ Y+ +S F +L L+ H+ T + + TL P P+ N+
Sbjct: 61 RVYHYRINTTAD-GKVYVTAESRFSTLAELVHHHST---VADGLVTTLHYPAPKCNK 113
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 643 NDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR 702
+ SS PV N E WYH +RS AE LL + +G+FLVR SE+ IS R
Sbjct: 2 SSGSSGTPV---NSLEKHSWYHGPVSRSAAEYLLSSLI-NGSFLVRESESSPGQLSISLR 57
Query: 703 AEDKIKHCRIR--VEGRLYTIGTTQFESLVELISYYE 737
E ++ H RI +G++Y ++F +L EL+ ++
Sbjct: 58 YEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHHS 94
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLY 719
+EWY+ TR QAE L +G FL+R SE+ S + +S +A K KH ++++ +Y
Sbjct: 1 REWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVY 60
Query: 720 TIGTTQFESLVELISYYERHPLY 742
IG +F ++ EL+ +Y++ P++
Sbjct: 61 CIGQRRFHTMDELVEHYKKAPIF 83
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
+W++G ++ R +AE L GD FL+R+SE+ D+S+S G+ H +++
Sbjct: 2 EWYYGNVT--RHQAECALNERGVEGD--FLIRDSESSPSDFSVSLKASGKNKHFKVQLVD 57
Query: 562 ESGQFYLVEKSYFDSLYSLISHYR 585
Y + + F ++ L+ HY+
Sbjct: 58 ---NVYCIGQRRFHTMDELVEHYK 78
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLY 471
A K KH ++++ +Y IG +F ++ EL+ +Y++ P++
Sbjct: 44 ASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIF 83
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 661 EWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYT 720
EWY+ TR QAE L +G FL+R SE+ S + +S +A K KH ++++ +Y
Sbjct: 6 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 65
Query: 721 IGTTQFESLVELISYYERHPLY 742
IG +F ++ EL+ +Y++ P++
Sbjct: 66 IGQRRFHTMDELVEHYKKAPIF 87
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 499 FGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIR 558
G +W++G ++ R +AE L GD FL+R+SE+ D+S+S G+ H +++
Sbjct: 3 LGSEWYYGNVT--RHQAECALNERGVEGD--FLIRDSESSPSDFSVSLKASGKNKHFKVQ 58
Query: 559 SKPESGQFYLVEKSYFDSLYSLISHYR 585
Y + + F ++ L+ HY+
Sbjct: 59 LVD---NVYCIGQRRFHTMDELVEHYK 82
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLY 471
A K KH ++++ +Y IG +F ++ EL+ +Y++ P++
Sbjct: 48 ASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIF 87
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 105/243 (43%), Gaps = 55/243 (22%)
Query: 502 KWFHGRLSGGRAEAEDLLR-RYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+WFH LSG +AE LL+ R H G+FL R S GD+SLS +V H RI++
Sbjct: 3 RWFHRDLSG--LDAETLLKGRGVH---GSFLARPSRKNQGDFSLSVRVGDQVTHIRIQN- 56
Query: 561 PESGQFY-LVEKSYFDSLYSLISHYRTNHLRSQE---FLITLQEPVPQPNQHEDKEWYHP 616
SG FY L F +L L+ +Y Q+ +I L+ P+ + ++ WYH
Sbjct: 57 --SGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSER-WYHG 113
Query: 617 TATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLL 676
+ QAE LL+ FLVR S SQ D +
Sbjct: 114 HMSGGQAETLLQAKGEPWTFLVRES---------------------------LSQPGDFV 146
Query: 677 RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQ-FESLVELISY 735
V SD +P S ++ H ++ EG YT+G + F+SL +L+ +
Sbjct: 147 LSVLSD-----QPKAGPGSPL--------RVTHIKVMCEGGRYTVGGLETFDSLTDLVEH 193
Query: 736 YER 738
+++
Sbjct: 194 FKK 196
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 50/214 (23%)
Query: 434 DKIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKK------IELWYPVSEDLIQ 486
D++ H RI+ G Y + G +F +L EL+ YY + + I L YP+
Sbjct: 47 DQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPL------ 100
Query: 487 RMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF 546
N E+W+HG +SGG+AE LL+ TFLVRES + GD+ LS
Sbjct: 101 -------NCSDPTSERWYHGHMSGGQAET--LLQAKGE--PWTFLVRESLSQPGDFVLSV 149
Query: 547 WWQG---------RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
RV H ++ E G++ + FDSL L+ H++ + + +
Sbjct: 150 LSDQPKAGPGSPLRVTHIKVMC--EGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFV 207
Query: 597 TLQEPVPQPNQHEDKEWYHPTATRSQAEDLLRRV 630
L++P +Y ATR A D+ RV
Sbjct: 208 YLRQP-----------YY---ATRVNAADIENRV 227
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 51/81 (62%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
WY+ TR QAE L +G FL+R SE+ + + +S +A+ K KH +++++ +Y I
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 66
Query: 722 GTTQFESLVELISYYERHPLY 742
G +F ++ EL+ +Y++ P++
Sbjct: 67 GQRKFSTMEELVEHYKKAPIF 87
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 499 FGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIR 558
G W++G+++ R +AE L H GD FL+R+SE+ D+S+S QG+ H +++
Sbjct: 3 LGSPWYYGKVT--RHQAEMALNERGHEGD--FLIRDSESSPNDFSVSLKAQGKNKHFKVQ 58
Query: 559 SKPESGQFYLVEKSYFDSLYSLISHYR 585
K Y + + F ++ L+ HY+
Sbjct: 59 LKE---TVYCIGQRKFSTMEELVEHYK 82
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLY 471
A+ K KH +++++ +Y IG +F ++ EL+ +Y++ P++
Sbjct: 48 AQGKNKHFKVQLKETVYCIGQRKFSTMEELVEHYKKAPIF 87
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 51/81 (62%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
WY+ TR QAE L +G FL+R SE+ + + +S +A+ K KH +++++ +Y I
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 62
Query: 722 GTTQFESLVELISYYERHPLY 742
G +F ++ EL+ +Y++ P++
Sbjct: 63 GQRKFSTMEELVEHYKKAPIF 83
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W++G+++ R +AE L H GD FL+R+SE+ D+S+S QG+ H +++ K
Sbjct: 3 WYYGKVT--RHQAEMALNERGHEGD--FLIRDSESSPNDFSVSLKAQGKNKHFKVQLKE- 57
Query: 563 SGQFYLVEKSYFDSLYSLISHYR 585
Y + + F ++ L+ HY+
Sbjct: 58 --TVYCIGQRKFSTMEELVEHYK 78
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLY 471
A+ K KH +++++ +Y IG +F ++ EL+ +Y++ P++
Sbjct: 44 AQGKNKHFKVQLKETVYCIGQRKFSTMEELVEHYKKAPIF 83
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 105/243 (43%), Gaps = 55/243 (22%)
Query: 502 KWFHGRLSGGRAEAEDLLR-RYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+WFH LSG +AE LL+ R H G+FL R S GD+SLS +V H RI++
Sbjct: 3 RWFHRDLSG--LDAETLLKGRGVH---GSFLARPSRKNQGDFSLSVRVGDQVTHIRIQN- 56
Query: 561 PESGQFY-LVEKSYFDSLYSLISHYRTNHLRSQE---FLITLQEPVPQPNQHEDKEWYHP 616
SG FY L F +L L+ +Y Q+ +I L+ P+ + ++ WYH
Sbjct: 57 --SGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSER-WYHG 113
Query: 617 TATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLL 676
+ QAE LL+ FLVR S SQ D +
Sbjct: 114 HMSGGQAETLLQAKGEPWTFLVRES---------------------------LSQPGDFV 146
Query: 677 RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQ-FESLVELISY 735
V SD +P S ++ H ++ EG YT+G + F+SL +L+ +
Sbjct: 147 LSVLSD-----QPKAGPGSPL--------RVTHIKVMCEGGRYTVGGLETFDSLTDLVEH 193
Query: 736 YER 738
+++
Sbjct: 194 FKK 196
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 50/214 (23%)
Query: 434 DKIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKK------IELWYPVSEDLIQ 486
D++ H RI+ G Y + G +F +L EL+ YY + + I L YP+
Sbjct: 47 DQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPL------ 100
Query: 487 RMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF 546
N E+W+HG +SGG+AE LL+ TFLVRES + GD+ LS
Sbjct: 101 -------NCSDPTSERWYHGHMSGGQAET--LLQAKGE--PWTFLVRESLSQPGDFVLSV 149
Query: 547 WWQG---------RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
RV H ++ E G++ + FDSL L+ H++ + + +
Sbjct: 150 LSDQPKAGPGSPLRVTHIKVMC--EGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFV 207
Query: 597 TLQEPVPQPNQHEDKEWYHPTATRSQAEDLLRRV 630
L++P +Y ATR A D+ RV
Sbjct: 208 YLRQP-----------YY---ATRVNAADIENRV 227
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAE-GGWWRGDYGGKRMHWFPSNYVAEIE 841
+ + V+A +++Q N+DELSF K +I +VTR E GGWW G + G R WFPSNYV EI+
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVI-HVTRVEEGGWWEGTHNG-RTGWFPSNYVREIK 62
Query: 842 P 842
P
Sbjct: 63 P 63
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2
Domain Of C-Abl
Length = 109
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 9/109 (8%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
W+HG +S R AE LL S +G+FLVRESE+ G S+S ++GRV H RI +
Sbjct: 10 SWYHGPVS--RNAAEYLL---SSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 64
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHED 610
+ G+ Y+ +S F++L L+ H+ T + + TL P P+ H D
Sbjct: 65 D-GKLYVSSESRFNTLAELVHHHST---VADGLITTLHYPAPKRGIHRD 109
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
N E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI
Sbjct: 4 NSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINT 62
Query: 715 --EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQR 758
+G+LY ++F +L EL+ ++ L YP + I R
Sbjct: 63 ASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRGIHR 108
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
W+HG +S R AE LL S +G+FLVRESE+ G S+S ++GRV H RI +
Sbjct: 17 SWYHGPVS--RNAAEYLL---SSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 71
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
+ G+ Y+ +S F++L L+ H+ T + + TL P P+ N+
Sbjct: 72 D-GKLYVSSESRFNTLAELVHHHST---VADGLITTLHYPAPKRNK 113
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
N E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI
Sbjct: 11 NSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINT 69
Query: 715 --EGRLYTIGTTQFESLVELI 733
+G+LY ++F +L EL+
Sbjct: 70 ASDGKLYVSSESRFNTLAELV 90
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+HG +S R AE LL S +G+FLVRESE+ G S+S ++GRV H RI + +
Sbjct: 7 WYHGPVS--RNAAEYLL---SSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
G+ Y+ +S F++L L+ H+ T + + TL P P+ N+
Sbjct: 62 -GKLYVSSESRFNTLAELVHHHST---VADGLITTLHYPAPKRNK 102
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--E 715
E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI +
Sbjct: 3 EKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 716 GRLYTIGTTQFESLVELISYY 736
G+LY ++F +L EL+ ++
Sbjct: 62 GKLYVSSESRFNTLAELVHHH 82
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+HG +S R AE LL S +G+FLVRESE+ G S+S ++GRV H RI + +
Sbjct: 107 WYHGPVS--RNAAEYLL---SSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 161
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
G+ Y+ +S F++L L+ H+ T + + TL P P+ N+
Sbjct: 162 -GKLYVSSESRFNTLAELVHHHST---VADGLITTLHYPAPKRNK 202
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
N E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI
Sbjct: 100 NSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINT 158
Query: 715 --EGRLYTIGTTQFESLVELISYY 736
+G+LY ++F +L EL+ ++
Sbjct: 159 ASDGKLYVSSESRFNTLAELVHHH 182
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 765 DNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY 824
+N ++G P DP F ALYD+ A D+ LS K + + G W
Sbjct: 32 ENLLAG-PSENDPNLFV-------ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ 83
Query: 825 GGKRMHWFPSNYVAEI 840
W PSNY+ +
Sbjct: 84 TKNGQGWVPSNYITPV 99
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+HG +S R AE LL S +G+FLVRESE+ G S+S ++GRV H RI + +
Sbjct: 146 WYHGPVS--RNAAEYLL---SSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 200
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
G+ Y+ +S F++L L+ H+ T + + TL P P+ N+
Sbjct: 201 -GKLYVSSESRFNTLAELVHHHST---VADGLITTLHYPAPKRNK 241
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
N E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI
Sbjct: 139 NSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINT 197
Query: 715 --EGRLYTIGTTQFESLVELISYY 736
+G+LY ++F +L EL+ ++
Sbjct: 198 ASDGKLYVSSESRFNTLAELVHHH 221
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 765 DNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY 824
+N ++G P DP F ALYD+ A D+ LS K + + G W
Sbjct: 71 ENLLAG-PSENDPNLFV-------ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ 122
Query: 825 GGKRMHWFPSNYVAEI 840
W PSNY+ +
Sbjct: 123 TKNGQGWVPSNYITPV 138
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+HG +S R AE LL S +G+FLVRESE+ G S+S ++GRV H RI + +
Sbjct: 104 WYHGPVS--RNAAEYLL---SSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 158
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
G+ Y+ +S F++L L+ H+ T + + TL P P+ N+
Sbjct: 159 -GKLYVSSESRFNTLAELVHHHST---VADGLITTLHYPAPKRNK 199
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
N E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI
Sbjct: 97 NSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINT 155
Query: 715 --EGRLYTIGTTQFESLVELISYY 736
+G+LY ++F +L EL+ ++
Sbjct: 156 ASDGKLYVSSESRFNTLAELVHHH 179
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 765 DNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY 824
+N ++G P DP F ALYD+ A D+ LS K + + G W
Sbjct: 29 ENLLAG-PSENDPNLFV-------ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ 80
Query: 825 GGKRMHWFPSNYVAEI 840
W PSNY+ +
Sbjct: 81 TKNGQGWVPSNYITPV 96
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 20/242 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
+F G ++ R EAED L + + DG +L+R+S ++G ++LS + +H I E
Sbjct: 7 FFFGNIT--REEAEDYLVQ-GGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIER--E 61
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYHPTATRSQ 622
Y + + + + HY + S + L++P +P + K
Sbjct: 62 LNGTYAIAGGRTHASPADLCHYHSQ--ESDGLVCLLKKPFNRPQGVQPK----TGPFEDL 115
Query: 623 AEDLLRRVPS-----DGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDL-L 676
E+L+R G L + + E + HE W+H +R ++E + L
Sbjct: 116 KENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVL 175
Query: 677 RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE--GRLYTIGTTQFESLVELIS 734
++G FL+R +N N SY + E K+ H RI + G+L +F++L +L+
Sbjct: 176 IGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVE 234
Query: 735 YY 736
+Y
Sbjct: 235 HY 236
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNY 836
P + IT ALYDYQA DDE+SF II+N+ + GWWRG G R FP+NY
Sbjct: 2 PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG-RYGLFPANY 60
Query: 837 V 837
V
Sbjct: 61 V 61
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 20/242 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
+F G ++ R EAED L + + DG +L+R+S ++G ++LS + +H I E
Sbjct: 15 FFFGNIT--REEAEDYLVQ-GGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIER--E 69
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYHPTATRSQ 622
Y + + + + HY + S + L++P +P + K
Sbjct: 70 LNGTYAIAGGRTHASPADLCHYHSQ--ESDGLVCLLKKPFNRPQGVQPKT----GPFEDL 123
Query: 623 AEDLLRRVPS-----DGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDL-L 676
E+L+R G L + + E + HE W+H +R ++E + L
Sbjct: 124 KENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVL 183
Query: 677 RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE--GRLYTIGTTQFESLVELIS 734
++G FL+R +N N SY + E K+ H RI + G+L +F++L +L+
Sbjct: 184 IGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVE 242
Query: 735 YY 736
+Y
Sbjct: 243 HY 244
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAE-GGWWRGDYGGKRMHWFPSNYVAEI 840
P V+A +++Q N+DELSF K +I +VTR E GGWW G + G R WFPSNYV EI
Sbjct: 2 PLGSVVRAKFNFQQTNEDELSFSKGDVI-HVTRVEEGGWWEGTHNG-RTGWFPSNYVREI 59
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 20/242 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
+F G ++ R EAED L + + DG +L+R+S ++G ++LS + +H I E
Sbjct: 16 FFFGNIT--REEAEDYLVQ-GGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIER--E 70
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYHPTATRSQ 622
Y + + + + HY + S + L++P +P + K
Sbjct: 71 LNGTYAIAGGRTHASPADLCHYHSQ--ESDGLVCLLKKPFNRPQGVQPKT----GPFEDL 124
Query: 623 AEDLLRRVPS-----DGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDL-L 676
E+L+R G L + + E + HE W+H +R ++E + L
Sbjct: 125 KENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVL 184
Query: 677 RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE--GRLYTIGTTQFESLVELIS 734
++G FL+R +N N SY + E K+ H RI + G+L +F++L +L+
Sbjct: 185 IGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVE 243
Query: 735 YY 736
+Y
Sbjct: 244 HY 245
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
IT ALYDYQA DDE+SF II+N+ + GWWRG G R FP+NYV
Sbjct: 11 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG-RYGLFPANYV 62
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKR 828
SG+ G D IT ALYDYQA DDE+SF II+N+ + GWWRG G R
Sbjct: 3 SGSSGTYDEYE-NDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG-R 60
Query: 829 MHWFPSNYV 837
FP+NYV
Sbjct: 61 YGLFPANYV 69
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAE-GGWWRGDYGGKRMHWFPSNYVAEI 840
+ + V+A +++Q N+DELSF K +I +VTR E GGWW G + G R WFPSNYV EI
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVI-HVTRVEEGGWWEGTHNG-RTGWFPSNYVREI 61
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related
Kinase
Length = 121
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
E WF G + RA+AE L YS G FL+RESE+ GD+SLS +G V H RIR
Sbjct: 16 EPWFFGAIK--RADAEKQLL-YSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRL 72
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEP 601
E G F+L + F +L +++Y T S + L++P
Sbjct: 73 DEGG-FFLTRRKVFSTLNEFVNYYTTT---SDGLCVKLEKP 109
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 662 WYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--EGRL 718
W+ R+ AE LL GAFL+R SE+ + +S E +KH RIR EG
Sbjct: 18 WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGF 77
Query: 719 YTIGTTQFESLVELISYY 736
+ F +L E ++YY
Sbjct: 78 FLTRRKVFSTLNEFVNYY 95
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ V+A +++Q N+DELSF K +I EGGWW G G R WFPSNYV E++
Sbjct: 9 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNG-RTGWFPSNYVREVK 64
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
W+HG +S R AE LL S +G+FLVRESE+ G S+S ++GRV H RI +
Sbjct: 71 SWYHGPVS--RNAAEYLL---SSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 125
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVP 603
+ G+ Y+ +S F++L L+ H+ T + + TL P P
Sbjct: 126 D-GKLYVSSESRFNTLAELVHHHST---VADGLITTLHYPAP 163
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
N E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI
Sbjct: 65 NSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINT 123
Query: 715 --EGRLYTIGTTQFESLVELISYY 736
+G+LY ++F +L EL+ ++
Sbjct: 124 ASDGKLYVSSESRFNTLAELVHHH 147
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
ALYD+ A D+ LS K + + G W W PSNY+ +
Sbjct: 13 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 64
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 15 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 70
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 71 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 111
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 15 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 74
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 75 LWVVKFNSLNELVDYH 90
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 15 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 45
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 14 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 69
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 70 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 110
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 73
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 74 LWVVKFNSLNELVDYH 89
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 44
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 9 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 64
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 65 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 105
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 69 LWVVKFNSLNELVDYH 84
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 39
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 9 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 64
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 65 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 105
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 69 LWVVKFNSLNELVDYH 84
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 39
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 13 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 68
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 69 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 109
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 72
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 73 LWVVKFNSLNELVDYH 88
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 43
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 8 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 63
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 64 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 104
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 68 LWVVKFNSLNELVDYH 83
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 38
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 8 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 63
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 64 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 104
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 68 LWVVKFNSLNELVDYH 83
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 38
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2
Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 8 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 63
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 64 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 104
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 68 LWVVKFNSLNELVDYH 83
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 38
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 3 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 58
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 59 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 99
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 3 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 63 LWVVKFNSLNELVDYH 78
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 3 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 33
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 5 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQ 604
F V K F+SL L+ ++R+ + R+Q+ + E VPQ
Sbjct: 61 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQ 101
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 65 LWVVKFNSLNELVDYH 80
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 35
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 14/251 (5%)
Query: 489 GLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWW 548
G +P+ H +F+G +S RAEAE+ L+ + + DG FL+R+ +G Y LS
Sbjct: 1 GSHMPDPAAHL--PFFYGSIS--RAEAEEHLK-LAGMADGLFLLRQCLRSLGGYVLSLVH 55
Query: 549 QGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQH 608
R +H I + +G + + L Y + L++P +P+
Sbjct: 56 DVRFHHFPIERQ-LNGTYAIAGGKAHCGPAELCEFYSRD---PDGLPCNLRKPCNRPSGL 111
Query: 609 EDKEWYHPTATRSQAEDLLRRV-PSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTA 667
E + + D +R+ +G L + + E + HE WYH +
Sbjct: 112 EPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSL 171
Query: 668 TRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE--GRLYTIGTT 724
TR +AE L +DG FL+RP + +Y +S + H I + G+ T
Sbjct: 172 TREEAERKLYSGAQTDGKFLLRP-RKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGT 230
Query: 725 QFESLVELISY 735
+F++L +L+ Y
Sbjct: 231 KFDTLWQLVEY 241
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 106/248 (42%), Gaps = 14/248 (5%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR 551
+P+ H +F+G +S RAEAE+ L+ + + DG FL+R+ +G Y LS R
Sbjct: 1 MPDPAAHL--PFFYGSIS--RAEAEEHLK-LAGMADGLFLLRQCLRSLGGYVLSLVHDVR 55
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDK 611
+H I + +G + + L Y + L++P +P+ E +
Sbjct: 56 FHHFPIERQ-LNGTYAIAGGKAHCGPAELCEFYSRD---PDGLPCNLRKPCNRPSGLEPQ 111
Query: 612 EWYHPTATRSQAEDLLRRV-PSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRS 670
+ D +R+ +G L + + E + HE WYH + TR
Sbjct: 112 PGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLTRE 171
Query: 671 QAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE--GRLYTIGTTQFE 727
+AE L +DG FL+RP + +Y +S + H I + G+ T+F+
Sbjct: 172 EAERKLYSGAQTDGKFLLRP-RKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFD 230
Query: 728 SLVELISY 735
+L +L+ Y
Sbjct: 231 TLWQLVEY 238
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S V +YDY A+NDDEL+F K II+ + + + WW+G+ G ++ FPSNYV
Sbjct: 1 GSCQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSG-QVGLFPSNYV 54
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISF------RAEDKIKHCR 711
E EWYH TR+QAE LLR+ +GAF+VR S + SY IS E IKH +
Sbjct: 14 EIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLG-SYTISVFMGARRSTEAAIKHYQ 72
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
I+ G+ Y F+S+ ELI Y++ + L YPV
Sbjct: 73 IKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMTRLRYPVG 115
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 15/107 (14%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR------VNHC 555
+W+H ++ R +AE LLR+ S +G F+VR+S +G Y++S + R + H
Sbjct: 17 EWYHRNIT--RNQAEHLLRQESK--EGAFIVRDSR-HLGSYTISVFMGARRSTEAAIKHY 71
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV 602
+I+ K +SGQ+Y+ E+ F S+ LI +++ N + + L+ PV
Sbjct: 72 QIK-KNDSGQWYVAERHAFQSIPELIWYHQHN---AAGLMTRLRYPV 114
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 609 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNS 646
E EWYH TR+QAE LLR+ +GAF+VR S + S
Sbjct: 14 EIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGS 51
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 791 YDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+DYQA++DDEL+ II+N+ + +GGWW G G+R FP N+V EI+
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRR-GLFPDNFVREIK 57
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 12/237 (5%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
+F+G +S RAEAE+ L+ + DG FL+R+ +G Y LS R +H I +
Sbjct: 8 FFYGSIS--RAEAEEHLK-LAGXADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQ-L 63
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYHPTATRSQ 622
+G + + L Y + L++P +P+ E + +
Sbjct: 64 NGTYAIAGGKAHCGPAELCEFYSRD---PDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAX 120
Query: 623 AEDLLRRV-PSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAE-DLLRRVP 680
D +R+ +G L + + E + HE WYH + TR +AE L
Sbjct: 121 VRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERXPWYHSSLTREEAERKLYSGAQ 180
Query: 681 SDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE--GRLYTIGTTQFESLVELISY 735
+DG FL+RP + +Y +S + H I + G+ T+F++L +L+ Y
Sbjct: 181 TDGKFLLRP-RKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEY 236
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
I VKALYDY A+ DEL+F + I + GWW G+ GKR W P+NYV +I
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKR-GWVPANYVQDI 58
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
I VKALYDY A+ DEL+F + I + GWW G+ GKR W P+NYV +I
Sbjct: 5 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKR-GWVPANYVQDI 59
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQH 844
+ VKA ++++ N+DELS K II EGGWW G G R WFPSNYV EI+
Sbjct: 11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNG-RTGWFPSNYVREIKSSE 69
Query: 845 NREDSS 850
SS
Sbjct: 70 RSGPSS 75
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG+++ R +AE LL G FLVRES + GDY+L +G+V H RI
Sbjct: 82 WFHGKIT--REQAERLLYPPE---TGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY--H 134
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTN 587
+ + + E+ YF++L L+ HY T+
Sbjct: 135 ASKLSIDEEVYFENLMQLVEHYTTD 159
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
W+H TR QAE LL P G FLVR S N Y + E K++H RI +I
Sbjct: 82 WFHGKITREQAERLLYP-PETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSI 140
Query: 722 G-TTQFESLVELISYY 736
FE+L++L+ +Y
Sbjct: 141 DEEVYFENLMQLVEHY 156
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
W+H TR QAE LL P G FLVR S N Y
Sbjct: 82 WFHGKITREQAERLLYP-PETGLFLVRESTNYPGDY 116
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 498 HFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRI 557
H G+ WFHG++S + EA +LL + +FLVR S+ GDYSL F + +I
Sbjct: 13 HEGKIWFHGKIS--KQEAYNLLMTVGQVC--SFLVRPSDNTPGDYSLYFRTNENIQRFKI 68
Query: 558 RSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
P + QF ++ Y++S+ +I HYR + + L+EPVP +Q
Sbjct: 69 CPTPNN-QF-MMGGRYYNSIGDIIDHYRKEQIVEGYY---LKEPVPMQDQ 113
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI-RVE 715
HE K W+H ++ +A +LL V +FLVRPS+N Y + FR + I+ +I
Sbjct: 13 HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72
Query: 716 GRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 751
+ +G + S+ ++I +Y + + + L PV
Sbjct: 73 NNQFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPV 108
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 608 HEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
HE K W+H ++ +A +LL V +FLVRPS+N Y
Sbjct: 13 HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDY 53
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 5 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
F V K F+SL L+ ++R+ + R+Q+ +
Sbjct: 61 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFL 93
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 65 LWVVKFNSLNELVDYH 80
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 35
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 494 NDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN 553
+D+ G WFHG LS R +A L+ G FLVR+SET G+ L+F +QG+
Sbjct: 2 SDQPLSGYPWFHGMLS--RLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAK 59
Query: 554 HCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTN 587
H R+ S +GQ V+ +F S++ ++ H+R +
Sbjct: 60 HLRL-SLNAAGQCR-VQHLHFQSIFDMLEHFRVH 91
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 662 WYHPTATRSQAEDLLRR--VPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-L 718
W+H +R +A L+ S G FLVR SE V++F + K KH R+ +
Sbjct: 11 WFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQ 70
Query: 719 YTIGTTQFESLVELISYYERHPL 741
+ F+S+ +++ ++ HP+
Sbjct: 71 CRVQHLHFQSIFDMLEHFRVHPI 93
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW---- 547
P+D + E+W+ G+++ R E+E LL + GTFLVRESET G Y LS
Sbjct: 140 APSDSIQ-AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYCLSVSDFDN 195
Query: 548 WQG-RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+G V H +IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 196 AKGLNVKHYKIR-KLDSGGFYITSRTQFNSLQQLVAYY 232
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSD-GAFLVRPSENDNSSYVISFRAED-----KIKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 146 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 205
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERH 739
IR G Y TQF SL +L++YY +H
Sbjct: 206 IRKLDSGGFYITSRTQFNSLQQLVAYYSKH 235
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 140
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ C D +KH +IR G
Sbjct: 159 ESERLLLNAENPRGTFLVRESETTKGAY----CLSVSDFDNAKGLNVKHYKIRKLDSGGF 214
Query: 448 YTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLIQRMGLG-----VPNDELH-- 498
Y TQF SL +L++YY +H L ++ P S+ Q GL +P + L
Sbjct: 215 YITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKP--QTQGLAKDAWEIPRESLRLE 272
Query: 499 -------FGEKWF 504
FGE W
Sbjct: 273 VKLGQGCFGEVWM 285
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
KALY +QAR DDEL+ K I+ + E GWW G GK+ H FP+ YV E+
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGH-FPAAYVEEL 62
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW---- 547
P+D + E+W+ G+++ R E+E LL + GTFLVRESET G Y LS
Sbjct: 57 APSDSIQ-AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYCLSVSDFDN 112
Query: 548 WQG-RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+G V H +IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 113 AKGLNVKHYKIR-KLDSGGFYITSRTQFNSLQQLVAYY 149
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSD-GAFLVRPSENDNSSYVISFRAED-----KIKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 63 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 122
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERH 739
IR G Y TQF SL +L++YY +H
Sbjct: 123 IRKLDSGGFYITSRTQFNSLQQLVAYYSKH 152
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ C D +KH +IR G
Sbjct: 76 ESERLLLNAENPRGTFLVRESETTKGAY----CLSVSDFDNAKGLNVKHYKIRKLDSGGF 131
Query: 448 YTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLIQRMGLG-----VPNDELH-- 498
Y TQF SL +L++YY +H L ++ P S+ Q GL +P + L
Sbjct: 132 YITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKP--QTQGLAKDAWEIPRESLRLE 189
Query: 499 -------FGEKWF 504
FGE W
Sbjct: 190 VKLGQGCFGEVWM 202
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW---- 547
P+D + E+W+ G+++ R E+E LL + GTFLVRESET G Y LS
Sbjct: 57 APSDSIQ-AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYCLSVSDFDN 112
Query: 548 WQG-RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+G V H +IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 113 AKGLNVKHYKIR-KLDSGGFYITSRTQFNSLQQLVAYY 149
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSD-GAFLVRPSENDNSSYVISFRAED-----KIKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 63 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 122
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERH 739
IR G Y TQF SL +L++YY +H
Sbjct: 123 IRKLDSGGFYITSRTQFNSLQQLVAYYSKH 152
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ C D +KH +IR G
Sbjct: 76 ESERLLLNAENPRGTFLVRESETTKGAY----CLSVSDFDNAKGLNVKHYKIRKLDSGGF 131
Query: 448 YTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLIQRMGLG-----VPNDELH-- 498
Y TQF SL +L++YY +H L ++ P S+ Q GL +P + L
Sbjct: 132 YITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKP--QTQGLAKDAWEIPRESLRLE 189
Query: 499 -------FGEKWF 504
FGE W
Sbjct: 190 VKLGQGCFGEVWM 202
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW---- 547
P+D + E+W+ G+++ R E+E LL + GTFLVRESET G Y LS
Sbjct: 57 APSDSIQ-AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYCLSVSDFDN 112
Query: 548 WQG-RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+G V H +IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 113 AKGLNVKHYKIR-KLDSGGFYITSRTQFNSLQQLVAYY 149
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSD-GAFLVRPSENDNSSYVISFRAED-----KIKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 63 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 122
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERH 739
IR G Y TQF SL +L++YY +H
Sbjct: 123 IRKLDSGGFYITSRTQFNSLQQLVAYYSKH 152
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ C D +KH +IR G
Sbjct: 76 ESERLLLNAENPRGTFLVRESETTKGAY----CLSVSDFDNAKGLNVKHYKIRKLDSGGF 131
Query: 448 YTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLIQRMGLG-----VPNDELH-- 498
Y TQF SL +L++YY +H L ++ P S+ Q GL +P + L
Sbjct: 132 YITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKP--QTQGLAKDAWEIPRESLRLE 189
Query: 499 -------FGEKWF 504
FGE W
Sbjct: 190 VKLGQGCFGEVWM 202
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG+++ R +AE LL G FLVRES + GDY+L G+V H RI
Sbjct: 10 WFHGKIT--REQAERLLYPPE---TGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMY--H 62
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTN 587
+ + + E+ YF++L L+ HY ++
Sbjct: 63 ASKLSIDEEVYFENLMQLVEHYTSD 87
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
W+H TR QAE LL P G FLVR S N Y + + K++H RI +I
Sbjct: 10 WFHGKITREQAERLLYP-PETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSI 68
Query: 722 G-TTQFESLVELISYY 736
FE+L++L+ +Y
Sbjct: 69 DEEVYFENLMQLVEHY 84
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
W+H TR QAE LL P G FLVR S N Y
Sbjct: 10 WFHGKITREQAERLLYP-PETGLFLVRESTNYPGDY 44
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHCRI 712
+EWY TR ++E LL P + G FLVR SE +Y +S D +KH +I
Sbjct: 4 EEWYFGKITRRESESLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI 62
Query: 713 RV--EGRLYTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLI 756
R G Y TQF SL +L++YY +H L ++ P S++ I
Sbjct: 63 RKLDSGGFYITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKEFI 110
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 3 AEEWYFGKIT--RRESESLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 59
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 60 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 88
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E++L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 15 ESESLLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 70
Query: 448 YTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLI 485
Y TQF SL +L++YY +H L ++ P S++ I
Sbjct: 71 YITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKEFI 110
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF--W-- 547
P D + E+W+ G+L GR +AE L + + GTFL+RESET G YSLS W
Sbjct: 58 APVDSIQ-AEEWYFGKL--GRKDAERQLLSFGNP-RGTFLIRESETTKGAYSLSIRDWDD 113
Query: 548 WQG-RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+G V H +IR K ++G +Y+ ++ F++L L+ HY
Sbjct: 114 MKGDHVKHYKIR-KLDNGGYYITTRAQFETLQQLVQHY 150
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 660 KEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFR-----AEDKIKHCRIR 713
+EWY R AE LL G FL+R SE +Y +S R D +KH +IR
Sbjct: 66 EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR 125
Query: 714 V--EGRLYTIGTTQFESLVELISYY 736
G Y QFE+L +L+ +Y
Sbjct: 126 KLDNGGYYITTRAQFETLQQLVQHY 150
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQHNRE 847
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++ E
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 67
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 6 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 61
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
F V K F+SL L+ ++R+ + R+Q+ +
Sbjct: 62 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFL 94
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 66 LWVVKFNSLNELVDYH 81
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 36
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF--WWQ 549
P D + E+W+ G+L GR +AE L + + GTFL+RESET G YSLS W
Sbjct: 59 APVDSIQ-AEEWYFGKL--GRKDAERQLLSFGNP-RGTFLIRESETTKGAYSLSIRDWDD 114
Query: 550 GR---VNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+ V H +IR K ++G +Y+ ++ F++L L+ HY
Sbjct: 115 XKGDHVKHYKIR-KLDNGGYYITTRAQFETLQQLVQHY 151
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 660 KEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFR-----AEDKIKHCRIR 713
+EWY R AE LL G FL+R SE +Y +S R D +KH +IR
Sbjct: 67 EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIR 126
Query: 714 V--EGRLYTIGTTQFESLVELISYY 736
G Y QFE+L +L+ +Y
Sbjct: 127 KLDNGGYYITTRAQFETLQQLVQHY 151
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQHNRE 847
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++ E
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 68
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G YSLS +G V H
Sbjct: 6 AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKH 62
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 63 YKIR-KLDSGGFYITSRTQFNSLQQLVAYY 91
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 5 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYK 64
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHP 740
IR G Y TQF SL +L++YY +H
Sbjct: 65 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 95
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ + +G +KH +IR G
Sbjct: 18 ESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGL----NVKHYKIRKLDSGGF 73
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 74 YITSRTQFNSLQQLVAYYSKHA 95
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF--W--WQG-RVNHC 555
E+W+ G+L GR +AE L + + GTFL+RESET G YSLS W +G V H
Sbjct: 5 EEWYFGKL--GRKDAERQLLSFGNP-RGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K ++G +Y+ ++ F++L L+ HY
Sbjct: 62 KIR-KLDNGGYYITTRAQFETLQQLVQHY 89
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 658 EDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFR-----AEDKIKHCR 711
+ +EWY R AE LL G FL+R SE +Y +S R D +KH +
Sbjct: 3 QAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYK 62
Query: 712 IRV--EGRLYTIGTTQFESLVELISYY 736
IR G Y QFE+L +L+ +Y
Sbjct: 63 IRKLDNGGYYITTRAQFETLQQLVQHY 89
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain
Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
Length = 98
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 6 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 61
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
F V K F+SL L+ ++R+ + R+Q+ +
Sbjct: 62 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFL 94
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 66 LWVVKFNSLNELVDYH 81
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 36
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 5 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 64
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHP 740
IR G Y TQF SL +L++YY +H
Sbjct: 65 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 95
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 6 AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 62
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 63 YKIR-KLDSGGFYITSRTQFNSLQQLVAYY 91
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ C D +KH +IR G
Sbjct: 18 ESERLLLNAENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 73
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 74 YITSRTQFNSLQQLVAYYSKHA 95
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHCRI 712
+EWY TR ++E LL P + G FLVR SE +Y +S D +KH +I
Sbjct: 4 EEWYFGKITRRESEALLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI 62
Query: 713 RV--EGRLYTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLI 756
R G Y TQF SL +L++YY +H L ++ P S++ I
Sbjct: 63 RKLDSGGFYITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKEFI 110
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 3 AEEWYFGKIT--RRESEALLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 59
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 60 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 88
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 15 ESEALLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 70
Query: 448 YTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLI 485
Y TQF SL +L++YY +H L ++ P S++ I
Sbjct: 71 YITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKEFI 110
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 5 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
F V K F+SL L+ ++R+ + R+Q+ +
Sbjct: 61 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFL 93
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 65 LWVVKFNSLNELVDYH 80
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 35
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 3 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 62
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHP 740
IR G Y TQF SL +L++YY +H
Sbjct: 63 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 93
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 4 AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 60
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 61 YKIR-KLDSGGFYITSRTQFNSLQQLVAYY 89
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ C D +KH +IR G
Sbjct: 16 ESERLLLNAENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 71
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 72 YITSRTQFNSLQQLVAYYSKHA 93
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG+++ R +AE LL G FLVRES + GDY+L G+V H RI
Sbjct: 10 WFHGKIT--REQAERLLYPPE---TGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMY--H 62
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTN 587
+ + + E+ YF++L L+ HY ++
Sbjct: 63 ASKLSIDEEVYFENLMQLVEHYTSD 87
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
W+H TR QAE LL P G FLVR S N Y + ++ K++H RI +I
Sbjct: 10 WFHGKITREQAERLLYP-PETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSI 68
Query: 722 G-TTQFESLVELISYY 736
FE+L++L+ +Y
Sbjct: 69 DEEVYFENLMQLVEHY 84
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
W+H TR QAE LL P G FLVR S N Y
Sbjct: 10 WFHGKITREQAERLLYP-PETGLFLVRESTNYPGDY 44
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 4 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 59
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
F V K F+SL L+ ++R+ + R+Q+ +
Sbjct: 60 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFL 92
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 4 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 63
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 64 LWVVKFNSLNELVDYH 79
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 4 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 34
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH +
Sbjct: 3 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYK 62
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHP 740
IR G Y TQF SL +L++YY +H
Sbjct: 63 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 93
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 4 AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKH 60
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 61 YKIR-KLDSGGFYITSRTQFNSLQQLVAYY 89
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ + +G +KH +IR G
Sbjct: 16 ESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGL----NVKHYKIRKLDSGGF 71
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 72 YITSRTQFNSLQQLVAYYSKHA 93
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 9 WFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 64
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLI 596
F V K F+SL L+ ++R+ + R+Q+ +
Sbjct: 65 GKYFLWVVK--FNSLNELVDYHRSTSVSRNQQIFL 97
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-LYT 720
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G Y
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 721 IGTTQFESLVELISYY 736
+ +F SL EL+ Y+
Sbjct: 69 LWVVKFNSLNELVDYH 84
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
W+ R++AE++L + DGAFL+R SE+
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESES 39
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHCRI 712
+EWY TR ++E LL P + G FLVR SE +Y +S D +KH +I
Sbjct: 4 EEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI 62
Query: 713 RV--EGRLYTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLI 756
R G Y TQF SL +L++YY +H L ++ P S++ I
Sbjct: 63 RKLDSGGFYITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKEFI 110
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 3 AEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 59
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 60 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 88
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 15 ESERLLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 70
Query: 448 YTIGTTQFESLVELISYYERHP--LYKKIELWYPVSEDLI 485
Y TQF SL +L++YY +H L ++ P S++ I
Sbjct: 71 YITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKEFI 110
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRS 559
GE WFHG+LS R EAE LL+ +G FLVRES T G Y L+ G+ H +
Sbjct: 6 GEPWFHGKLS--RREAEALLQL-----NGDFLVRESTTTPGQYVLTGLQSGQPKHL-LLV 57
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHLR--SQEFLITLQEPV 602
PE + F+S+ LIS++ NHL S + LQ+PV
Sbjct: 58 DPEG--VVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPV 100
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
+Q + W+H +R +AE LL+ +G FLVR S YV++ + KH +
Sbjct: 2 SQLRGEPWFHGKLSRREAEALLQL---NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD 58
Query: 715 EGRLYTIGTTQFESLVELISYY 736
+ +FES+ LISY+
Sbjct: 59 PEGVVRTKDHRFESVSHLISYH 80
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRA---EGGWWRGDYGGKRMHWFPSNYVAEI 840
VKALYDY+ + DDELSFP+ AII + + + G+W G++ G R+ FPS V E+
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNG-RIGVFPSVLVEEL 66
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSNYVAE 839
T KA YD+ AR+ ELS + II + + + GWWRG+ G R+ WFPSNYV E
Sbjct: 7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYG-RIGWFPSNYVEE 60
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW---- 547
P+D + E+W+ G+++ R E+E LL + GTFLVRESET G Y LS
Sbjct: 58 APSDSIQ-AEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDN 113
Query: 548 WQG-RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+G V H +IR K +SG FY+ ++ F SL L+++Y
Sbjct: 114 AKGLNVKHYKIR-KLDSGGFYITSRTQFSSLQQLVAYY 150
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAED-----KIKHC 710
+ +EWY TR ++E LL P + G FLVR SE +Y +S D +KH
Sbjct: 64 QAEEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 122
Query: 711 RIRV--EGRLYTIGTTQFESLVELISYYERH 739
+IR G Y TQF SL +L++YY +H
Sbjct: 123 KIRKLDSGGFYITSRTQFSSLQQLVAYYSKH 153
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 5 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 58
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 77 ESERLLLNPENPRGTFLVRESETTKGAY----CLSVSDFDNAKGLNVKHYKIRKLDSGGF 132
Query: 448 YTIGTTQFESLVELISYYERH 468
Y TQF SL +L++YY +H
Sbjct: 133 YITSRTQFSSLQQLVAYYSKH 153
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V A+YDY A N+DELSF K +I+ + + + WW+G+ G FPSNYV
Sbjct: 21 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV-TGLFPSNYV 70
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRS 559
GE WFHG+LS R EAE LL+ +G FLVRES T G Y L+ G+ H +
Sbjct: 6 GEPWFHGKLS--RREAEALLQL-----NGDFLVRESTTTPGQYVLTGSQSGQPKHL-LLV 57
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHLR--SQEFLITLQEPV 602
PE + F+S+ LIS++ NHL S + LQ+PV
Sbjct: 58 DPEG--VVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPV 100
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
W+H +R +AE LL+ +G FLVR S YV++ + KH + +
Sbjct: 9 WFHGKLSRREAEALLQL---NGDFLVRESTTTPGQYVLTGSQSGQPKHLLLVDPEGVVRT 65
Query: 722 GTTQFESLVELISYY 736
+FES+ LISY+
Sbjct: 66 KDHRFESVSHLISYH 80
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHC 710
+ +EWY TR ++E LL P + G FLVR SE +Y +S D +KH
Sbjct: 1 QAEEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 59
Query: 711 RIRV--EGRLYTIGTTQFESLVELISYYERHP 740
+IR G Y TQF SL +L++YY +H
Sbjct: 60 KIRKLDSGGFYITSRTQFSSLQQLVAYYSKHA 91
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 2 AEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 58
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 59 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 87
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 14 ESERLLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 69
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 70 YITSRTQFSSLQQLVAYYSKHA 91
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHC 710
+ +EWY TR ++E LL P + G FLVR SE +Y +S D +KH
Sbjct: 1 QAEEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 59
Query: 711 RIRV--EGRLYTIGTTQFESLVELISYYERHP 740
+IR G Y TQF SL +L++YY +H
Sbjct: 60 KIRKLDSGGFYITSRTQFSSLQQLVAYYSKHA 91
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 2 AEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 58
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 59 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 87
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 14 ESERLLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 69
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 70 YITSRTQFSSLQQLVAYYSKHA 91
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHCRI 712
+EWY TR ++E LL P + G FLVR SE +Y +S D +KH +I
Sbjct: 2 EEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI 60
Query: 713 RV--EGRLYTIGTTQFESLVELISYYERHP 740
R G Y TQF SL +L++YY +H
Sbjct: 61 RKLDSGGFYITSRTQFSSLQQLVAYYSKHA 90
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 1 AEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 57
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 58 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 86
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 13 ESERLLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 68
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 69 YITSRTQFSSLQQLVAYYSKHA 90
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHCRI 712
+EWY TR ++E LL P + G FLVR SE +Y +S D +KH +I
Sbjct: 2 EEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI 60
Query: 713 RV--EGRLYTIGTTQFESLVELISYYERHP 740
R G Y TQF SL +L++YY +H
Sbjct: 61 RKLDSGGFYITSRTQFSSLQQLVAYYSKHA 90
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V H
Sbjct: 1 AEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 57
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 58 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 86
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 13 ESERLLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 68
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 69 YITSRTQFSSLQQLVAYYSKHA 90
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y+LS +G V H
Sbjct: 8 AEEWYFGKIT--RRESERLLLNAEN-PRGTFLVRESETVKGAYALSVSDFDNAKGLNVKH 64
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
IR K +SG FY+ ++ F+SL L+++Y
Sbjct: 65 YLIR-KLDSGGFYITSRTQFNSLQQLVAYY 93
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
+ +EWY TR ++E LL + G FLVR SE +Y +S D +KH
Sbjct: 7 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYL 66
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHP 740
IR G Y TQF SL +L++YY +H
Sbjct: 67 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 97
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L + RG L++ + +G+ + +G +KH IR G
Sbjct: 20 ESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGL----NVKHYLIRKLDSGGF 75
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 76 YITSRTQFNSLQQLVAYYSKHA 97
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 13/180 (7%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR-VEGRLYT 720
WY +R +A+ L+ G FLVR S YV+S ++ H I + R +
Sbjct: 14 WYMGPVSRQEAQTRLQGQ-RHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFK 72
Query: 721 IGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPGYMDPASF 780
IG +F+ L L+ +Y+ H L L P MG + P D +
Sbjct: 73 IGDQEFDHLPALLEFYKIHYL-DTTTLIEPAPRYPSPPMG----SVSAPNLPTAEDNLEY 127
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V+ LYD+ + ++L F K I+ + + E WW R+ P YV ++
Sbjct: 128 ------VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ G +S R EA+ L+ H G FLVR+S T GDY LS RV+H I S P
Sbjct: 14 WYMGPVS--RQEAQTRLQGQRH---GMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 68
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
+ + + FD L +L+ Y+ ++L + TL EP P+
Sbjct: 69 --RRFKIGDQEFDHLPALLEFYKIHYLDT----TTLIEPAPR 104
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 791 YDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
++Y A +DELS K + + + GWWRG Y G+ + WFPSNYV E
Sbjct: 11 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQ-VGWFPSNYVTE 58
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 13/180 (7%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR-VEGRLYT 720
WY +R +A+ L+ G FLVR S YV+S ++ H I + R +
Sbjct: 14 WYMGPVSRQEAQTRLQGQ-RHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFK 72
Query: 721 IGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPGYMDPASF 780
IG +F+ L L+ +Y+ H L L P MG + P D +
Sbjct: 73 IGDQEFDHLPALLEFYKIHYL-DTTTLIEPAPRYPSPPMG----SVSAPNLPTAEDNLEY 127
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V+ LYD+ + ++L F K I+ + + E WW R+ P YV ++
Sbjct: 128 ------VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ G +S R EA+ L+ H G FLVR+S T GDY LS RV+H I S P
Sbjct: 14 WYMGPVS--RQEAQTRLQGQRH---GMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 68
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
+ + + FD L +L+ Y+ ++L + TL EP P+
Sbjct: 69 --RRFKIGDQEFDHLPALLEFYKIHYLDT----TTLIEPAPR 104
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide
S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDK-----IKHCRI 712
+EWY TR ++E LL P + G FLVR SE +Y +S D +KH +I
Sbjct: 3 EEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI 61
Query: 713 RV--EGRLYTIGTTQFESLVELISYYERHP 740
R G Y TQF SL +L++YY +H
Sbjct: 62 RKLDSGGFYIWSRTQFSSLQQLVAYYSKHA 91
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 499 FGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVN 553
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS +G V
Sbjct: 1 MAEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 57
Query: 554 HCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
H +IR K +SG FY+ ++ F SL L+++Y
Sbjct: 58 HYKIR-KLDSGGFYIWSRTQFSSLQQLVAYY 87
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ C D +KH +IR G
Sbjct: 14 ESERLLLNPENPRGTFLVRESETTKGA----YCLSVSDFDNAKGLNVKHYKIRKLDSGGF 69
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 70 YIWSRTQFSSLQQLVAYYSKHA 91
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 791 YDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
+ Y A +DELS K + ++ + + GWWRG Y G+ + WFPSNYV E
Sbjct: 7 FAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQ-IGWFPSNYVLE 54
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 14/90 (15%)
Query: 748 WYPVSEDLIQRMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHA 807
W+P S ++ +G ++ TP +F P V A+YDY A N+DELSF K
Sbjct: 11 WFPASH--VKLLG----PSSERATP------AFHPVC-QVIAMYDYAANNEDELSFSKGQ 57
Query: 808 IISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+I+ + + + WW+G+ G FPSNYV
Sbjct: 58 LINVMNKDDPDWWQGEINGV-TGLFPSNYV 86
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 661 EWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRL-Y 719
EW+H +R QAE+LL G F++R S++ + IS R ED ++H ++ + + Y
Sbjct: 10 EWFHEGLSRHQAENLLMG-KDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNY 68
Query: 720 TIGTTQFESLVELISYYERHPLYKKIELW 748
+ T +F SL +L+ YY + K+ +++
Sbjct: 69 FLWTEKFPSLNKLVDYYRTTSISKQKQVF 97
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGD--GTFLVRESETFIGDYSLSFWWQGRVNHCRIRS 559
+WFH LS R +AE+LL +G G F++R S++ GD+S+S + V H ++
Sbjct: 10 EWFHEGLS--RHQAENLL-----MGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMR 62
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQE 593
+ F EK F SL L+ +YRT + Q+
Sbjct: 63 DTKGNYFLWTEK--FPSLNKLVDYYRTTSISKQK 94
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSD--GAFLVRPSENDNSSYVISFRAEDKIK-----HCRI 712
+EWY TR ++E LL P + G FLVR SE +Y +S A K H +I
Sbjct: 2 EEWYFGKITRRESERLLLN-PENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKI 60
Query: 713 RV--EGRLYTIGTTQFESLVELISYYERHP 740
R G Y TQF SL +L++YY +H
Sbjct: 61 RKLDSGGFYITSRTQFSSLQQLVAYYSKHA 90
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG-----RVNH 554
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS V H
Sbjct: 1 AEEWYFGKIT--RRESERLLLNPEN-PRGTFLVRESETTKGAYCLSVSAFANAKGLNVAH 57
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR K +SG FY+ ++ F SL L+++Y
Sbjct: 58 YKIR-KLDSGGFYITSRTQFSSLQQLVAYY 86
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 390 KNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRV--EGRL 447
++E +L +P RG L++ + +G+ + A A +G + H +IR G
Sbjct: 13 ESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGL----NVAHYKIRKLDSGGF 68
Query: 448 YTIGTTQFESLVELISYYERHP 469
Y TQF SL +L++YY +H
Sbjct: 69 YITSRTQFSSLQQLVAYYSKHA 90
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 662 WYHPTATRSQAEDLLRRVPSDG----AFLVRPSENDNSSYVISFRAEDKIKHCRI--RVE 715
W+ +RS+A +RR+ ++G AFL+R SE ++ YV+S R ++H +I R
Sbjct: 4 WFFGCISRSEA---VRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG 60
Query: 716 GRLYTIGTTQFESLVELISYYERHPLYKKIELWYP 750
GRL+ F SL EL++Y+ L + L P
Sbjct: 61 GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAP 95
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGD--GTFLVRESETFIGDYSLSFWWQGRVNHCRIR 558
E WF G +S R+EA +RR G+ G FL+R SE DY LS V H +I
Sbjct: 2 EPWFFGCIS--RSEA---VRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIW 56
Query: 559 SKPESGQFYLVEKSYFDSLYSLISHYRTNHL 589
+ G+ +L E F SL L++++R L
Sbjct: 57 RRA-GGRLHLNEAVSFLSLPELVNYHRAQSL 86
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal Structure
At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 650 PVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKH 709
P+P H++K W ++ R++AE+LLR DG FLVR S Y S + ++KH
Sbjct: 3 PIPH---HDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRESSKQ-GCYACSVVVDGEVKH 57
Query: 710 CRIRVEGRLYTIGT--TQFESLVELISYYERHPLYK-----KIELWYPV 751
C I Y + SL EL+ +Y+ L + + L YPV
Sbjct: 58 CVINKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 509 SGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPESGQFYL 568
S R +AE+LLR DGTFLVRES G Y+ S G V HC I +K +G +
Sbjct: 16 SSNRNKAENLLRGKR---DGTFLVRESSK-QGCYACSVVVDGEVKHCVI-NKTATGYGFA 70
Query: 569 VEKSYFDSLYSLISHYRTNHL--RSQEFLITLQEPV 602
+ + SL L+ HY+ L + +TL PV
Sbjct: 71 EPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 601 PVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
P+P H++K W ++ R++AE+LLR DG FLVR S
Sbjct: 3 PIPH---HDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRES 39
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 657 HEDKEWYHPTATRSQAEDLL-RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI--- 712
H + W+H +R +A+ L+ ++ DG FLVR S+++ ++V+S KIKH +I
Sbjct: 23 HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPV 82
Query: 713 RVEGRLYTI---GTTQFESLVELISYYE 737
+G ++ G T+F L++L+ +Y+
Sbjct: 83 EDDGEMFHTLDDGHTRFTDLIQLVEFYQ 110
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 497 LHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
+H + WFH ++S R EA+ L+ + L DG FLVR+S++ + LS ++ H +
Sbjct: 22 IHRSQPWFHHKIS--RDEAQRLIIQQG-LVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQ 78
Query: 557 IRSKPESGQ-FYLVEKSY--FDSLYSLISHYRTN 587
I + G+ F+ ++ + F L L+ Y+ N
Sbjct: 79 IIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLN 112
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV-EGRLYT 720
W H TRS+AE+LL R DG+FLVR SE+ + +Y + + + RI E +T
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 721 IGTTQ------FESLVELISYYERHPLYKKIELWYPV 751
+ ++ F L +LI +Y++ + L YPV
Sbjct: 72 VQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPV 108
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 17/108 (15%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W HG ++ R++AE+LL R DG+FLVR SE+ Y+L ++ V RI P
Sbjct: 12 WNHGNIT--RSKAEELLSRTGK--DGSFLVRASESISRAYALCVLYRNCVYTYRIL--PN 65
Query: 563 SGQFYLVEKS------YFDSLYSLISHYRTNHLRSQEFLIT-LQEPVP 603
+ V+ S +F L LI Y+ ++ L+T LQ PVP
Sbjct: 66 EDDKFTVQASEGVSMRFFTKLDQLIEFYKKENMG----LVTHLQYPVP 109
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
W H TRS+AE+LL R DG+FLVR SE+ + +Y
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAY 47
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+ W+HG + R EA++LL++ G FLVRES G+Y LS + G+ H I+
Sbjct: 17 QDWYHGAIP--RIEAQELLKK-----QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQY- 68
Query: 561 PESGQFYLVEKSYFDSLYSLIS-HYRTNHLRSQEFLITLQEPVPQPNQHEDKEW 613
Y E + F ++ LI HY T + +++ + L P+P+ DK+W
Sbjct: 69 --VDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPK-----DKKW 115
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 659 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRL 718
+++WYH R +A++LL++ G FLVR S YV+S ++ + +H I+ +
Sbjct: 16 EQDWYHGAIPRIEAQELLKK---QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNM 72
Query: 719 YTIGTTQFESLVELIS--YYERHPLYKK--IELWYPVSED 754
Y T F ++ +LI Y + + KK + L P+ +D
Sbjct: 73 YRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 610 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
+++WYH R +A++LL++ G FLVR S Y
Sbjct: 16 EQDWYHGAIPRIEAQELLKK---QGDFLVRESHGKPGEY 51
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG LS R +A L+ G F++R+SET G+ L+F +QG+ H R+ S
Sbjct: 13 WFHGTLS--RVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL-SLNG 69
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTN 587
GQ + V+ +F S++ ++ H+ T+
Sbjct: 70 HGQCH-VQHLWFQSVFDMLRHFHTH 93
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 659 DKEWYHPTATRSQAEDL-LRRVP-SDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEG 716
D W+H T +R +A L L P S G F++R SE V++F + K KH R+ + G
Sbjct: 10 DYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNG 69
Query: 717 RLYT-IGTTQFESLVELISYYERHPL 741
+ F+S+ +++ ++ HP+
Sbjct: 70 HGQCHVQHLWFQSVFDMLRHFHTHPI 95
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
WY R+ AE +L SDG FLVR D + + IS + ++KH +I LY I
Sbjct: 11 WYAGPMERAGAESILAN-RSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRI 69
Query: 722 GTTQ-FESLVELISYYERHPL---YKKIE--LWYPVSE 753
+ F L EL+ +Y+++ L +K ++ L +P E
Sbjct: 70 TEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 107
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ G + RA AE +L S DGTFLVR+ ++++S + V H +I +
Sbjct: 11 WYAGPME--RAGAESILANRS---DGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTA-- 63
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRS--QEFLITLQEPVPQ 604
G + + EK F L L+ Y+ N L+ + TLQ P +
Sbjct: 64 EGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 107
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
KALY Y A++ DELSF + II + GWW G GK+ FP+NYV +I
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQ-GLFPNNYVTKI 60
>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
pdb|1CSZ|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
Length = 112
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG++S R E+E ++ S +G FL+R + G Y+L +G+V H RI K +
Sbjct: 15 WFHGKIS--REESEQIVLIGSKT-NGKFLIRARDNN-GSYALCLLHEGKVLHYRI-DKDK 69
Query: 563 SGQFYLVEKSYFDSLYSLISHY 584
+G+ + E FD+L+ L+ HY
Sbjct: 70 TGKLSIPEGKKFDTLWQLVEHY 91
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 655 NQHEDKEWYHPTATRSQAEDL-LRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR 713
HE W+H +R ++E + L ++G FL+R +N N SY + E K+ H RI
Sbjct: 8 GSHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRID 66
Query: 714 VE--GRLYTIGTTQFESLVELISYY 736
+ G+L +F++L +L+ +Y
Sbjct: 67 KDKTGKLSIPEGKKFDTLWQLVEHY 91
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 606 NQHEDKEWYHPTATRSQAEDL-LRRVPSDGAFLVRPSENDNS 646
HE W+H +R ++E + L ++G FL+R +N+ S
Sbjct: 8 GSHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGS 49
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
WY R+ AE +L SDG FLVR D + + IS + ++KH +I LY I
Sbjct: 28 WYAGPMERAGAESILAN-RSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRI 86
Query: 722 GTTQ-FESLVELISYYERHPL 741
+ F L EL+ +Y+++ L
Sbjct: 87 TEKKAFRGLTELVEFYQQNSL 107
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 491 GVPND-ELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ 549
G P D +H W+ G + RA AE +L S DGTFLVR+ ++++S +
Sbjct: 18 GPPQDLSVHL---WYAGPME--RAGAESILANRS---DGTFLVRQRVKDAAEFAISIKYN 69
Query: 550 GRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRS--QEFLITLQEPVPQPNQ 607
V H +I + G + + EK F L L+ Y+ N L+ + TLQ P +P +
Sbjct: 70 VEVKHIKIMTA--EGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEPEK 127
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 656 QHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE 715
H++K W ++ R++AE+LLR DG FLVR S + Y S + ++KHC I
Sbjct: 6 HHDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKT 63
Query: 716 GRLYTIGT--TQFESLVELISYYERHPLYK-----KIELWYPV 751
Y + SL EL+ +Y+ L + + L YPV
Sbjct: 64 ATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 498 HFGEK-WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
H EK W G S R +AE+LLR DGTFLVRES G Y+ S G V HC
Sbjct: 6 HHDEKTWNVG--SSNRNKAENLLRGKR---DGTFLVRESSK-QGCYACSVVVDGEVKHCV 59
Query: 557 IRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL--RSQEFLITLQEPV 602
I +K +G + + + SL L+ HY+ L + +TL PV
Sbjct: 60 I-NKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 607 QHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
H++K W ++ R++AE+LLR DG FLVR S
Sbjct: 6 HHDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRES 39
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85
Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase:
An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 656 QHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE 715
H++K W ++ R++AE+LLR DG FLVR S + Y S + ++KHC I
Sbjct: 5 HHDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKT 62
Query: 716 GRLYTIGT--TQFESLVELISYYERHPLYK-----KIELWYPV 751
Y + SL EL+ +Y+ L + + L YPV
Sbjct: 63 ATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 105
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 509 SGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPESGQFYL 568
S R +AE+LLR DGTFLVRES G Y+ S G V HC I +K +G +
Sbjct: 15 SSNRNKAENLLRGKR---DGTFLVRESSK-QGCYACSVVVDGEVKHCVI-NKTATGYGFA 69
Query: 569 VEKSYFDSLYSLISHYRTNHL--RSQEFLITLQEPV 602
+ + SL L+ HY+ L + +TL PV
Sbjct: 70 EPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 105
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 607 QHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
H++K W ++ R++AE+LLR DG FLVR S
Sbjct: 5 HHDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRES 38
>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
Length = 114
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG LS R +A L+ G F++R+SET G+ L+F +QG+ H R+ S
Sbjct: 13 WFHGTLS--RVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL-SLNG 69
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTN 587
GQ + V+ +F S++ + H+ T+
Sbjct: 70 HGQCH-VQHLWFQSVFDXLRHFHTH 93
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 659 DKEWYHPTATRSQAEDL-LRRVP-SDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEG 716
D W+H T +R +A L L P S G F++R SE V++F + K KH R+ + G
Sbjct: 10 DYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNG 69
Query: 717 RLYT-IGTTQFESLVELISYYERHPL 741
+ F+S+ + + ++ HP+
Sbjct: 70 HGQCHVQHLWFQSVFDXLRHFHTHPI 95
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 791 YDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
++Y A +DELS K + + + GWWRG Y G+ + WFPSNYV E
Sbjct: 24 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQ-VGWFPSNYVTE 71
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ G +S R EA+ L+ H G FLVR+S T GDY LS RV+H I S P
Sbjct: 21 WYMGPVS--RQEAQTRLQGQRH---GMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLP- 74
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
+ + + FD L +L+ Y+ ++L + TL EP P+
Sbjct: 75 -NRRFKIGDQEFDHLPALLEFYKIHYLDT----TTLIEPAPR 111
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR-VEGRLYT 720
WY +R +A+ L+ G FLVR S YV+S ++ H I + R +
Sbjct: 21 WYMGPVSRQEAQTRLQG-QRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFK 79
Query: 721 IGTTQFESLVELISYYERHPL 741
IG +F+ L L+ +Y+ H L
Sbjct: 80 IGDQEFDHLPALLEFYKIHYL 100
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
K L+DY +N+DEL +I + E GWW G K + FPSN+V E+E
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNK-LGLFPSNFVKELE 60
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 788 KALYDYQARNDDELSFPKHAIIS--NVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
+ALY ++ARN DE+SF II T E GW G + G WFP NYV ++ N
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGN-FGWFPCNYVEKMPSSEN 67
Query: 846 REDSS 850
+ S
Sbjct: 68 EKAVS 72
>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain
Length = 110
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISF--------RAEDKIKH 709
+D +W+ +RSQ+E LLR+ +GAF+VR S + Y +S + K H
Sbjct: 9 DDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYH 67
Query: 710 CRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
E +LY F+S+ +LI Y++ + L +PVS
Sbjct: 68 VHTNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITRLRHPVS 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 15/106 (14%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ------GRVNHCR 556
WF G +S R+++E LLR+ +G F+VR S +G Y++S + + G V H
Sbjct: 13 WFAGNIS--RSQSEQLLRQKGK--EGAFMVRNSSQ-VGMYTVSLFSKAVNDKKGTVKHYH 67
Query: 557 IRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV 602
+ + E+ + YL E FDS+ LI +++ N S + L+ PV
Sbjct: 68 VHTNAEN-KLYLAENYCFDSIPKLIHYHQHN---SAGMITRLRHPV 109
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 609 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
+D +W+ +RSQ+E LLR+ +GAF+VR S
Sbjct: 9 DDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS 41
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 791 YDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
+ Y A +DELS + ++ GWWRG Y G+ + WFPSNYV E
Sbjct: 8 FAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQ-IGWFPSNYVLE 55
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 773 GYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWF 832
G PA A + +ALY ++A+ D+ L+F K+ +I+ V + WW G+ G++ WF
Sbjct: 1 GAAQPAMAQGALLQAQALYPWRAKKDNHLNFNKNDVIT-VLEQQDMWWFGEVQGQK-GWF 58
Query: 833 PSNYVAEI 840
P +YV I
Sbjct: 59 PKSYVKLI 66
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 37/206 (17%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR- 713
+ E WY +R +A LL+ G FLVR S YV+S ++ H I
Sbjct: 6 DSEERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 64
Query: 714 -----------------VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLI 756
V IG +F+SL L+ +Y+ H L L PVS
Sbjct: 65 SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL-DTTTLIEPVSR--- 120
Query: 757 QRMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAE 816
R G SG + A + V+AL+D+ ++++L F K I+ + E
Sbjct: 121 SRQG--------SGVILRQEEAEY------VRALFDFNGNDEEDLPFKKGDILRIRDKPE 166
Query: 817 GGWWRGDYGGKRMHWFPSNYVAEIEP 842
WW + + P YV + P
Sbjct: 167 EQWWNAEDSEGKRGMIPVPYVEKYRP 192
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ GRLS R EA LL+ H G FLVR+S T GDY LS RV+H I S
Sbjct: 13 WYWGRLS--RQEAVALLQGQRH---GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 67
Query: 563 ---------------SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
S + FDSL +L+ Y+ ++L + TL EPV + Q
Sbjct: 68 RPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT----TTLIEPVSRSRQ 123
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 37/206 (17%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR- 713
+ E WY +R +A LL+ G FLVR S YV+S ++ H I
Sbjct: 6 DSEERSSWYWGRLSRQEAVALLQGQ-RHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 64
Query: 714 -----------------VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLI 756
V IG +F+SL L+ +Y+ H L L PVS
Sbjct: 65 SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL-DTTTLIEPVSRS-- 121
Query: 757 QRMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAE 816
R G SG + A + V+AL+D+ ++++L F K I+ + E
Sbjct: 122 -RQG--------SGVILRQEEAEY------VRALFDFNGNDEEDLPFKKGDILRIRDKPE 166
Query: 817 GGWWRGDYGGKRMHWFPSNYVAEIEP 842
WW + + P YV + P
Sbjct: 167 EQWWNAEDSEGKRGMIPVPYVEKYRP 192
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ GRLS R EA LL+ H G FLVR+S T GDY LS RV+H I S
Sbjct: 13 WYWGRLS--RQEAVALLQGQRH---GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 67
Query: 563 ---------------SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
S + FDSL +L+ Y+ ++L + TL EPV + Q
Sbjct: 68 RPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT----TTLIEPVSRSRQ 123
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 657 HEDKEWYHPTATRSQAEDLL-RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI--- 712
H + W+H +R +++ L+ ++ DG FLVR S+ + +V+S K+KH I
Sbjct: 11 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPS 70
Query: 713 RVEGRLYTI---GTTQFESLVELISYYE 737
EGRLY G T+F L++L+ +++
Sbjct: 71 EEEGRLYFSMDDGQTRFTDLLQLVEFHQ 98
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 497 LHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
+H + WFHGR+S R E++ L+ + L DG FLVRES+ + LS +V H
Sbjct: 10 IHRTQLWFHGRIS--REESQRLIGQQG-LVDGLFLVRESQRNPQGFVLSLCHLQKVKHYL 66
Query: 557 IRSKPESGQFYLV---EKSYFDSLYSLISHYRTN 587
I E G+ Y ++ F L L+ ++ N
Sbjct: 67 ILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLN 100
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCR-IRVEGRLYT 720
W+ R Q ++LL+ S G +L+R + + IS + D++KH + + + ++
Sbjct: 18 WFAGNMERQQTDNLLKSHAS-GTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHI 76
Query: 721 IGTTQFESLVELISYYERHPL---YKKIE--LWYPVS 752
+F+SL+EL+ YY+ H L +K+++ L YP S
Sbjct: 77 TEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYS 113
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G + R + ++LL+ ++ GT+L+RE +++S + V H ++ K
Sbjct: 18 WFAGNME--RQQTDNLLKSHA---SGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK-- 70
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRS--QEFLITLQEPVPQPN 606
++ E FDSL L+ +Y+ + L+ ++ TL+ P P+
Sbjct: 71 DNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPS 116
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 472 KKIELWYPVSEDLIQRMGLGVPNDEL--HFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGT 529
+KI W + + + L D L H W+ G+++ R +AE++L S DGT
Sbjct: 163 RKINEWLGIKNETEDQYSLMEDEDALPHHEERTWYVGKIN--RTQAEEML---SGKRDGT 217
Query: 530 FLVRESETFIGDYSLSFWWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL 589
FL+RES + G Y+ S G HC I + +G + + + SL L+ HY+ L
Sbjct: 218 FLIRES-SQRGCYACSVVVDGDTKHCVI-YRTATGFGFAEPYNLYGSLKELVLHYQHASL 275
Query: 590 --RSQEFLITLQEPVPQPN 606
+ +TL PV P
Sbjct: 276 VQHNDALTVTLAHPVRAPG 294
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI--RV 714
HE++ WY R+QAE++L DG FL+R S + Y S + KHC I
Sbjct: 191 HEERTWYVGKINRTQAEEML-SGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTA 248
Query: 715 EGRLYTIGTTQFESLVELISYYERHPLYK-----KIELWYPV 751
G + + SL EL+ +Y+ L + + L +PV
Sbjct: 249 TGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPV 290
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 587 NHLRSQEFLITLQEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
N Q L+ ++ +P HE++ WY R+QAE++L DG FL+R S
Sbjct: 173 NETEDQYSLMEDEDALPH---HEERTWYVGKINRTQAEEML-SGKRDGTFLIRES 223
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 657 HEDKEWYHPTATRSQAEDLL-RRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI--- 712
H + W+H +R +++ L+ ++ DG FLVR S+ + +V+S K+KH I
Sbjct: 14 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPS 73
Query: 713 RVEGRLYTI---GTTQFESLVELISYYE 737
EGRLY G T+F L++L+ +++
Sbjct: 74 EEEGRLYFSMDDGQTRFTDLLQLVEFHQ 101
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 497 LHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
+H + WFHGR+S R E++ L+ + L DG FLVRES+ + LS +V H
Sbjct: 13 IHRTQLWFHGRIS--REESQRLIGQQG-LVDGLFLVRESQRNPQGFVLSLCHLQKVKHYL 69
Query: 557 IRSKPESGQFYLV---EKSYFDSLYSLISHYRTN 587
I E G+ Y ++ F L L+ ++ N
Sbjct: 70 ILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLN 103
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 779 SFTPASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNY 836
S T + K ++ Y+A+NDDEL+ + I++ + + + GWW G+ G+R FP N+
Sbjct: 4 SRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGV-FPDNF 62
Query: 837 VAEIEPQHNRE 847
V + P +E
Sbjct: 63 VKLLPPDFEKE 73
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNHC 555
E+WF +S AE + LL + LG +F++R+SET G YSLS QG V H
Sbjct: 64 EEWFFKGISRKDAERQ-LLAPGNMLG--SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 120
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNH 588
+IR+ ++G FY+ +S F +L L+ HY+ +
Sbjct: 121 KIRTL-DNGGFYISPRSTFSTLQELVDHYKKGN 152
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISF-----RAE 704
V + + E +EW+ +R AE LL G+F++R SE SY +S R
Sbjct: 55 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 114
Query: 705 DKIKHCRIRV--EGRLYTIGTTQFESLVELISYYER 738
D +KH +IR G Y + F +L EL+ +Y++
Sbjct: 115 DTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKK 150
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQ 843
I V ALYDY+A + ++LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 3 IIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVDSL 61
Query: 844 HNRE 847
E
Sbjct: 62 ETEE 65
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNHC 555
E+WF +S AE + LL + LG +F++R+SET G YSLS QG V H
Sbjct: 70 EEWFFKGISRKDAERQ-LLAPGNMLG--SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 126
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNH 588
+IR+ ++G FY+ +S F +L L+ HY+ +
Sbjct: 127 KIRTL-DNGGFYISPRSTFSTLQELVDHYKKGN 158
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISF-----RAE 704
V + + E +EW+ +R AE LL G+F++R SE SY +S R
Sbjct: 61 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 120
Query: 705 DKIKHCRIRV--EGRLYTIGTTQFESLVELISYYER 738
D +KH +IR G Y + F +L EL+ +Y++
Sbjct: 121 DTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKK 156
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQ 843
I V ALYDY+A + ++LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 9 IIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVDSL 67
Query: 844 HNRE 847
E
Sbjct: 68 ETEE 71
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 37/206 (17%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR- 713
+ E WY +R +A LL+ G FLVR S YV+S ++ H I
Sbjct: 8 DSEERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 66
Query: 714 -----------------VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLI 756
V IG +F+SL L+ +Y+ H L L PVS
Sbjct: 67 SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL-DTTTLIEPVSR--- 122
Query: 757 QRMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAE 816
R G SG + A + V+AL+D+ ++++L F K I+ + E
Sbjct: 123 SRQG--------SGVILRQEEAEY------VRALFDFNGNDEEDLPFKKGDILRIRDKPE 168
Query: 817 GGWWRGDYGGKRMHWFPSNYVAEIEP 842
WW + + P YV + P
Sbjct: 169 EQWWNAEDSEGKRGMIPVPYVEKYRP 194
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ GRLS R EA LL+ H G FLVR+S T GDY LS RV+H I S
Sbjct: 15 WYWGRLS--RQEAVALLQGQRH---GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 69
Query: 563 ---------------SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
S + FDSL +L+ Y+ ++L + TL EPV + Q
Sbjct: 70 RPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT----TTLIEPVSRSRQ 125
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 8 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 64
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 65 KIRNL-DNGGFYISPRITFPGLHELVRHY 92
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 655 NQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IK 708
N E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +K
Sbjct: 3 NSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVK 62
Query: 709 HCRIRV--EGRLYTIGTTQFESLVELISYY 736
H +IR G Y F L EL+ +Y
Sbjct: 63 HYKIRNLDNGGFYISPRITFPGLHELVRHY 92
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 7 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 63
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 64 KIRNL-DNGGFYISPRITFPGLHELVRHY 91
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 655 NQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IK 708
N E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +K
Sbjct: 2 NSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVK 61
Query: 709 HCRIRV--EGRLYTIGTTQFESLVELISYY 736
H +IR G Y F L EL+ +Y
Sbjct: 62 HYKIRNLDNGGFYISPRITFPGLHELVRHY 91
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 74 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 130
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 131 KIRNL-DNGGFYISPRITFPGLHELVRHY 158
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK--- 706
V + N E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+
Sbjct: 65 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 124
Query: 707 --IKHCRIRV--EGRLYTIGTTQFESLVELISYY 736
+KH +IR G Y F L EL+ +Y
Sbjct: 125 EVVKHYKIRNLDNGGFYISPRITFPGLHELVRHY 158
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCR-IRVEGRLYT 720
W+ R Q ++LL+ S G +L+R + + IS + D++KH + + + ++
Sbjct: 24 WFAGNMERQQTDNLLKSHAS-GTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHI 82
Query: 721 IGTTQFESLVELISYYERHPL 741
+F+SL+EL+ YY+ H L
Sbjct: 83 TEAKKFDSLLELVEYYQCHSL 103
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WF G + R + ++LL+ SH GT+L+RE +++S + V H ++ K
Sbjct: 24 WFAGNME--RQQTDNLLK--SH-ASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK-- 76
Query: 563 SGQFYLVEKSYFDSLYSLISHYRTNHLRS--QEFLITLQEP 601
++ E FDSL L+ +Y+ + L+ ++ TL+ P
Sbjct: 77 DNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYP 117
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 4 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 61 KIRNL-DNGGFYISPRITFPGLHELVRHY 88
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 658 EDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +KH +
Sbjct: 2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYK 61
Query: 712 IRV--EGRLYTIGTTQFESLVELISYY 736
IR G Y F L EL+ +Y
Sbjct: 62 IRNLDNGGFYISPRITFPGLHELVRHY 88
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 2 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 58
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 59 KIRNL-DNGGFYISPRITFPGLHELVRHY 86
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 662 WYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IKHCRIRV- 714
W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +KH +IR
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 63
Query: 715 -EGRLYTIGTTQFESLVELISYY 736
G Y F L EL+ +Y
Sbjct: 64 DNGGFYISPRITFPGLHELVRHY 86
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 3 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 59
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 60 KIRNL-DNGGFYISPRITFPGLHELVRHY 87
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 658 EDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +KH +
Sbjct: 1 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYK 60
Query: 712 IRV--EGRLYTIGTTQFESLVELISYY 736
IR G Y F L EL+ +Y
Sbjct: 61 IRNLDNGGFYISPRITFPGLHELVRHY 87
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 74 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 130
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 131 KIRNL-DNGGFYISPRITFPGLHELVRHY 158
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK--- 706
V + N E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+
Sbjct: 65 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 124
Query: 707 --IKHCRIRV--EGRLYTIGTTQFESLVELISYY 736
+KH +IR G Y F L EL+ +Y
Sbjct: 125 EVVKHYKIRNLDNGGFYISPRITFPGLHELVRHY 158
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNHC 555
E+WF +S R +AE L ++ G+F++R+SET G YSLS QG V H
Sbjct: 4 EEWFFKGIS--RKDAERQLLAPGNM-LGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNH 588
+IR+ ++G FY+ +S F +L L+ HY+ +
Sbjct: 61 KIRT-LDNGGFYISPRSTFSTLQELVDHYKKGN 92
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 658 EDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISF-----RAEDKIKHCR 711
E +EW+ +R AE LL G+F++R SE SY +S R D +KH +
Sbjct: 2 ETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYK 61
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYER 738
IR G Y + F +L EL+ +Y++
Sbjct: 62 IRTLDNGGFYISPRSTFSTLQELVDHYKK 90
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG++SG A +++ DG FLVRES GDY L + V H R+ +
Sbjct: 6 WFHGKISGQEA-----VQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHR-- 58
Query: 563 SGQFYLVEKSYFDSLYSLISHY 584
G + E +F +L ++ HY
Sbjct: 59 DGHLTIDEAVFFCNLMDMVEHY 80
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI-RVEGRLYT 720
W+H + +A L+ P DG FLVR S YV+ + H R+ +G L
Sbjct: 6 WFHGKISGQEAVQQLQP-PEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTI 64
Query: 721 IGTTQFESLVELISYYER 738
F +L++++ +Y +
Sbjct: 65 DEAVFFCNLMDMVEHYSK 82
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 774 YMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTR-----AEGGWWRGDYGGKR 828
Y TPA A++DY+A D+EL+ + + +++ + GWW G R
Sbjct: 19 YFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGR 78
Query: 829 MHWFPSNYVA 838
+ FPSNYVA
Sbjct: 79 VGVFPSNYVA 88
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAED---------KIKHCRI 712
WYH + QAE LL+ FLVR S + +V+S ++ ++ H ++
Sbjct: 8 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 67
Query: 713 RVEGRLYTIGTTQ-FESLVELISYYER 738
EG YT+G + F+SL +L+ ++++
Sbjct: 68 MCEGGRYTVGGLETFDSLTDLVEHFKK 94
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG---------RVN 553
W+HG +SGG +AE LL+ TFLVRES + GD+ LS RV
Sbjct: 8 WYHGHMSGG--QAETLLQAKGE--PWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVT 63
Query: 554 HCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEP 601
H ++ E G++ + FDSL L+ H++ + + + L++P
Sbjct: 64 HIKVMC--EGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQP 110
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYVAEI 840
AS K ++ Y+A+NDDEL+ + I++ + + + GWW G+ G+R FP N+V +
Sbjct: 1 ASDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-GVFPDNFVKLL 59
Query: 841 EP 842
P
Sbjct: 60 PP 61
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW----WQG-RVNHC 555
E+WF +S AE + LL + LG +F++R+SET G YSLS QG V H
Sbjct: 71 EEWFFKGISRKDAERQ-LLAPGNMLG--SFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 127
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRT-NHLRSQEFLITLQEPVPQPNQHED 610
+IR+ ++G FY+ +S F +L L+ HY+ N Q+ + PQ +D
Sbjct: 128 KIRT-LDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKD 182
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISF-----RAE 704
V + + E +EW+ +R AE LL G+F++R SE SY +S R
Sbjct: 62 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 121
Query: 705 DKIKHCRIRV--EGRLYTIGTTQFESLVELISYYER 738
D +KH +IR G Y + F +L EL+ +Y++
Sbjct: 122 DTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKK 157
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQ 843
I V ALYDY+A + ++LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 10 IIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVDSL 68
Query: 844 HNRE 847
E
Sbjct: 69 ETEE 72
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEG--GWWRGDYGGKRMHWFPSNYVAE 839
T A Y++ AR+ ELS + ++ +R G GWW+G+ G R+ WFPS YV E
Sbjct: 9 TAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNG-RIGWFPSTYVEE 63
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+ALYD++A D+EL+F II + ++ WW+G+ + + FPSN+V
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-NHRGIGLFPSNFV 69
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G +SLS QG V H
Sbjct: 66 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 122
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 123 KIRNL-DNGGFYISPRITFPGLHELVRHY 150
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK--- 706
V + N E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+
Sbjct: 57 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 116
Query: 707 --IKHCRIRV--EGRLYTIGTTQFESLVELISYY 736
+KH +IR G Y F L EL+ +Y
Sbjct: 117 EVVKHYKIRNLDNGGFYISPRITFPGLHELVRHY 150
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWW--RGDYGGKRMHWFPSNYVA 838
ALYDY+AR ++LSF K + EG WW R GK + PSNYVA
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKN-GYIPSNYVA 60
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G + LS QG V H
Sbjct: 3 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHY 59
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 60 KIRNL-DNGGFYISPRITFPGLHELVRHY 87
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 658 EDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
E + W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +KH +
Sbjct: 1 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYK 60
Query: 712 IRV--EGRLYTIGTTQFESLVELISYY 736
IR G Y F L EL+ +Y
Sbjct: 61 IRNLDNGGFYISPRITFPGLHELVRHY 87
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHC 555
E WF LS AE + L +H G+FL+RESE+ G + LS QG V H
Sbjct: 3 EPWFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHY 59
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHY 584
+IR+ ++G FY+ + F L+ L+ HY
Sbjct: 60 KIRNL-DNGGFYISPRITFPGLHELVRHY 87
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 662 WYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IKHCRIRV- 714
W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +KH +IR
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNL 64
Query: 715 -EGRLYTIGTTQFESLVELISYY 736
G Y F L EL+ +Y
Sbjct: 65 DNGGFYISPRITFPGLHELVRHY 87
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQHNRE 847
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++ E
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 67
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQHNRE 847
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++ E
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 69
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
K ++ Y+A+NDDEL+ + I++ + + + GWW G+ G+R FP N+V + P
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-GVFPDNFVKLLPP 62
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 769 SGTPGYMDPASFTPASITVK--ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGG 826
SG+ G DP + P S K A+YDY +DELSF + AII + + + GW+ G G
Sbjct: 3 SGSSG--DP-PWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNG 59
Query: 827 KRMHWFPSNYVAEI 840
FP NYV I
Sbjct: 60 V-TGLFPGNYVESI 72
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ L+ Y N+DEL+F + II +++ E GWW+G+ GK FP N+ +I
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKE-GVFPDNFAVQI 63
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
+T ALYDY++R + +LSF K + V EG WW R + PSNYVA
Sbjct: 1 MTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYVA 55
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVA 838
TV ALYDY A DEL+ + II + WW G G + +FP+N+VA
Sbjct: 8 TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLS---FWWQGR-VNHCR 556
EKWF +S R +AE L + G+FL+RESE+ G +SLS QG V H +
Sbjct: 12 EKWFFRTIS--RKDAERQLLAPMNKA-GSFLIRESESNKGAFSLSVKDITTQGEVVKHYK 68
Query: 557 IRSKPESGQFYLVEKSYFDSLYSLISHY 584
IRS ++G +Y+ + F +L +L+ HY
Sbjct: 69 IRSL-DNGGYYISPRITFPTLQALVQHY 95
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 658 EDKEWYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFR----AEDKIKHCRI 712
E ++W+ T +R AE LL + G+FL+R SE++ ++ +S + + +KH +I
Sbjct: 10 EVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKI 69
Query: 713 RV--EGRLYTIGTTQFESLVELISYYER 738
R G Y F +L L+ +Y +
Sbjct: 70 RSLDNGGYYISPRITFPTLQALVQHYSK 97
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine
Kinase
Length = 125
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 661 EWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK------IKHCRI-- 712
EWY TRSQAE LL++ +G F+VR S + Y +S A+ I+H +
Sbjct: 12 EWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCS 70
Query: 713 RVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSE 753
+ + Y F ++ ELI+Y++ + L YPVS+
Sbjct: 71 TPQSQYYLAEKHLFSTIPELINYHQHNSAGLISRLKYPVSQ 111
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 612 EWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
EWY TRSQAE LL++ +G F+VR S
Sbjct: 12 EWYSKHMTRSQAEQLLKQEGKEGGFIVRDS 41
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
WFHG++SG ++ +++ DG FLVRES GDY L + V H R+ +
Sbjct: 7 WFHGKISG-----QEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHR-- 59
Query: 563 SGQFYLVEKSYFDSLYSLISHY 584
G + E +F +L + HY
Sbjct: 60 DGHLTIDEAVFFCNLXDXVEHY 81
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI-RVEGRLYT 720
W+H + +A L+ P DG FLVR S YV+ + H R+ +G L
Sbjct: 7 WFHGKISGQEAVQQLQP-PEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTI 65
Query: 721 IGTTQFESLVELISYYER 738
F +L + + +Y +
Sbjct: 66 DEAVFFCNLXDXVEHYSK 83
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSN 835
P T ALYDY+AR ++LSF K + EG WW + + PSN
Sbjct: 20 PTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSN 79
Query: 836 YV 837
YV
Sbjct: 80 YV 81
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+A+YD++A D+EL+F II+ + ++ WW+G+ + + FPSN+V
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE-THQGIGLFPSNFV 69
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 9 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 62
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 784 SITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
++ +AL + A+ D+ L+F KH II+ + + E WW G+ G R WFP +YV I
Sbjct: 10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVHGGR-GWFPKSYVKII 64
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYV 837
K ++ Y+A+NDDEL+ + I++ + + + GWW G+ G+R FP N+V
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-GVFPDNFV 61
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
S T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 1 GSTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+ALYD++A D+EL+F +I+ + ++ WW+G+ + FPSN+V
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFV 57
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 791 YDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ Y +NDDEL II V E GWW G GK FPSN++ E+
Sbjct: 14 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGK-TGMFPSNFIKEL 62
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY+AR +D+LSF K + +EG WW + PSNYVA ++
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
ALYDY+AR +D+LSF K + +EG WW + PSNYVA +
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
K L++Y +N+DEL II E GWW G K + FPSN+V E+E
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK-LGLFPSNFVKELE 63
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI-GDYSLSFWWQGRVNHCRIRSK 560
+W+ G +S R E + LR DGTFLVR++ T + GDY+L+ G N+ I+
Sbjct: 12 EWYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKGG--NNKSIKIF 64
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ + F+S+ LI+HYR L
Sbjct: 65 HRDGKYGFSDSLTFNSVVELINHYRNESL 93
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 791 YDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSNYVAEIE 841
YDY A +DDEL+ II NV + E GW G+ G+R FP N+V EI+
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRR-GMFPDNFVKEIK 57
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWR------GDYGGKRMHWFPSNYVAEIE 841
ALYDY+A +D+LSF K + +EG WW G+ G + PSNYVA ++
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETG-----YIPSNYVAPVD 73
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVA 838
V+AL+D+ + EL+F + +I+ + + + WW G +R FPSNYVA
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR-GIFPSNYVA 57
>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain
Length = 118
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 653 QPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR----AEDK-I 707
PN E EWY+ + +R +AE LL +GAF+VR S + V F +E+ I
Sbjct: 2 SPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCI 61
Query: 708 KHCRIRVEG----RLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 751
KH I+ R Y F+S+ LI Y++ + L YPV
Sbjct: 62 KHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPV 109
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 604 QPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
PN E EWY+ + +R +AE LL +GAF+VR S
Sbjct: 2 SPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS 39
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 491 GVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG 550
G PN+ + +W++ +S R +AE LL +G F+VR+S T G Y++S + +
Sbjct: 1 GSPNNLETY--EWYNKSIS--RDKAEKLLLDTGK--EGAFMVRDSRT-PGTYTVSVFTKA 53
Query: 551 RVN------HCRIRSKPES-GQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV- 602
++ H I+ +S ++Y+ EK FDS+ LI +++ N + L+ PV
Sbjct: 54 IISENPCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYN---GGGLVTRLRYPVC 110
Query: 603 PQPNQHED 610
P H D
Sbjct: 111 GSPGIHRD 118
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 773 GYMDPASFTPAS-ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHW 831
G MDP P + KALYD++ ND EL F + +I+ + + W+ G G+ +
Sbjct: 1 GAMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQS-GF 59
Query: 832 FPSNYVAEIEP 842
FP +YV + P
Sbjct: 60 FPLSYVQVLVP 70
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 791 YDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ Y +NDDEL II V E GWW G GK FPSN++ E+
Sbjct: 25 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGK-TGMFPSNFIKEL 73
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI-GDYSLSFWWQGRVNHCRIRSK 560
+W+ G +S R E + LR DGTFLVR++ T + GDY+L+ G N+ I+
Sbjct: 12 EWYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKGG--NNKSIKIF 64
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ + F+S+ LI+HYR L
Sbjct: 65 HRDGKYGFSDPLTFNSVVELINHYRNESL 93
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY+A +D+LSF K + +EG WW + PSNYVA ++
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 764 DDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNV-TRAEGGWWRG 822
DD+ SGT + V+ALYDY+ + DELSF ++ + E GW +G
Sbjct: 420 DDDATSGT------------EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKG 467
Query: 823 DYGGKRMHWFPSNYVAEIE 841
++ +P+NYV I+
Sbjct: 468 RLDNGQVGLYPANYVEAIQ 486
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
Length = 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF----WWQGR-VNHCRI 557
WF LS AE + L +H G+FL+RESE+ G +SLS QG V H +I
Sbjct: 3 WFFKNLSRKDAERQLLAPGNTH---GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI 59
Query: 558 RSKPESGQFYLVEKSYFDSLYSLISHY 584
R+ ++G FY+ + F L+ L+ HY
Sbjct: 60 RN-LDNGGFYISPRITFPGLHELVRHY 85
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 662 WYHPTATRSQAE-DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK-----IKHCRIRV- 714
W+ +R AE LL + G+FL+R SE+ S+ +S R D+ +KH +IR
Sbjct: 3 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 62
Query: 715 -EGRLYTIGTTQFESLVELISYY 736
G Y F L EL+ +Y
Sbjct: 63 DNGGFYISPRITFPGLHELVRHY 85
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI 712
WY TR +AE L VP DG+FLVR S +D +SFR+ K H RI
Sbjct: 26 WYWGPITRWEAEGKLANVP-DGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+ W+ G ++ R EAE L +++ DG+FLVR+S SLSF G+ H RI
Sbjct: 24 QGWYWGPIT--RWEAEGKL---ANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHS 78
Query: 561 PESGQFY-------------LVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV 602
FY L+E S DS + R+ S + + L PV
Sbjct: 79 NGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPV 133
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 613 WYHPTATRSQAEDLLRRVPSDGAFLVRPSEND 644
WY TR +AE L VP DG+FLVR S +D
Sbjct: 26 WYWGPITRWEAEGKLANVP-DGSFLVRDSSDD 56
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI-GDYSLSFWWQGRVNHCRIRSKP 561
W+ G +S R E + LR DGTFLVR++ T + GDY+L+ G N+ I+
Sbjct: 12 WYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKGG--NNKLIKIFH 64
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ + F S+ LI+HYR L
Sbjct: 65 RDGKYGFSDPLTFSSVVELINHYRNESL 92
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI-GDYSLSFWWQGRVNHCRIRSKP 561
W+ G +S R E + LR DGTFLVR++ T + GDY+L+ G N+ I+
Sbjct: 12 WYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKGG--NNKLIKIFH 64
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ + F S+ LI+HYR L
Sbjct: 65 RDGKYGFSDPLTFSSVVELINHYRNESL 92
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI 712
H++K W ++ R++AE+LL R DG FLVR S + Y S + ++KHC I
Sbjct: 298 HDEKTWNVGSSNRNKAENLL-RGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVI 351
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 498 HFGEK-WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
H EK W G S R +AE+LLR DGTFLVRES + G Y+ S G V HC
Sbjct: 297 HHDEKTWNVG--SSNRNKAENLLRGKR---DGTFLVRES-SKQGCYACSVVVDGEVKHCV 350
Query: 557 IRSKPESGQFYLVEKSYFDSLYSL 580
I +K +G + + + SL L
Sbjct: 351 I-NKTATGYGFAEPYNLYSSLKEL 373
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 595 LITLQEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
L+ E +P H++K W ++ R++AE+LL R DG FLVR S
Sbjct: 288 LVEDDEDLPH---HDEKTWNVGSSNRNKAENLL-RGKRDGTFLVRES 330
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 491 GVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI-GDYSLSFWWQ 549
G+ N+ +W+ G +S R E + LR DGTFLVR++ T + GDY+L+
Sbjct: 1 GMNNNMSLQNAEWYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKG 55
Query: 550 GRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G N+ I+ G++ + F S+ LI+HYR L
Sbjct: 56 G--NNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESL 93
>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py
pdb|1KA7|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Y-C
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 504 FHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPES 563
+HG++S R E LL DG++L+R+SE+ G Y L + G + R+ S+ E+
Sbjct: 7 YHGKIS--RETGEKLLLATGL--DGSYLLRDSESVPGVYCLCVLYHGYIYTYRV-SQTET 61
Query: 564 GQFYL-----VEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV 602
G + V K YF + +LIS ++ Q +I LQ PV
Sbjct: 62 GSWSAETAPGVHKRYFRKIKNLISAFQKP---DQGIVIPLQYPV 102
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 791 YDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSNYVAEIE 841
YDY A +DDEL+ II NV + E GW G+ G+R FP N+V EI+
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRR-GMFPDNFVKEIK 58
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
W+ GRLS R EA LL+ H G FLVR+S T GDY LS RV+H I S
Sbjct: 11 SWYWGRLS--RQEAVALLQGQRH---GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSG 65
Query: 562 E---------------SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
S + FDSL +L+ Y+ ++L + TL EPV +
Sbjct: 66 PRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT----TTLIEPVSRSR 121
Query: 607 Q 607
Q
Sbjct: 122 Q 122
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR- 713
+ E WY +R +A LL+ G FLVR S YV+S ++ H I
Sbjct: 5 DSEERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 63
Query: 714 -----------------VEGRLYTIGTTQFESLVELISYYERHPL 741
V IG +F+SL L+ +Y+ H L
Sbjct: 64 SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL 108
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI-GDYSLSFWWQGRVNHCRIRSK 560
+W+ G +S R E + LR DGTFLVR++ T + GDY+L+ G N+ I+
Sbjct: 5 EWYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKGG--NNKLIKIF 57
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHL 589
G++ + F+S+ LI+HYR L
Sbjct: 58 HRDGKYGFSDPLTFNSVVELINHYRNESL 86
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVP-SDGAFLVRPSENDNSSYVISFRAEDKIKHCRI--- 712
H + W+H +R ++ ++++ DG FL+R S+++ ++V++ KIK+ +I
Sbjct: 2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 713 RVEGRLY---TIGTTQFESLVELISYYE 737
+G+ + G T+F L++L+ +Y+
Sbjct: 62 EDDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 497 LHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
+H + WFHGR+S R E+ ++++ L DG FL+R+S++ + L+ ++ + +
Sbjct: 1 IHRTQHWFHGRIS--REESHRIIKQQG-LVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQ 57
Query: 557 IRSKPESGQ-FYLVE--KSYFDSLYSLISHYRTN 587
I + GQ F+ ++ + F L L+ Y+ N
Sbjct: 58 ILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQLN 91
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ALYDY A+N DEL I+ + E GWW + G+R + P +Y+ ++
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQR-GFVPGSYLEKL 63
>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With A
Slam Peptide
pdb|1D4W|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D4W|B Chain B, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D1Z|A Chain A, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|B Chain B, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|C Chain C, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|D Chain D, Crystal Structure Of The Xlp Protein Sap
pdb|1M27|A Chain A, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 104
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 504 FHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPES 563
+HG++S R E LL DG++L+R+SE+ G Y L + G + R+ S+ E+
Sbjct: 7 YHGKIS--RETGEKLLLATGL--DGSYLLRDSESVPGVYCLCVLYHGYIYTYRV-SQTET 61
Query: 564 GQFYL-----VEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV 602
G + V K YF + +LIS ++ Q +I LQ PV
Sbjct: 62 GSWSAETAPGVHKRYFRKIKNLISAFQKP---DQGIVIPLQYPV 102
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
KAL D++ +DDEL F K+ II+ +++ + W G+ G R WFP+ +V
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLR-GWFPAKFV 59
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
+ALY ++ R DEL + II ++ WW+G G R PSNYVAE
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKG-RTGLIPSNYVAE 68
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVP-SDGAFLVRPSENDNSSYVISFRAEDKIKHCRI--- 712
H + W+H +R ++ ++++ DG FL+R S+++ ++V++ KIK+ +I
Sbjct: 2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 713 RVEGRLY---TIGTTQFESLVELISYYE 737
+G+ + G T+F L++L+ +Y+
Sbjct: 62 EDDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 497 LHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
+H + WFHGR+S R E+ ++++ L DG FL+R+S++ + L+ ++ + +
Sbjct: 1 IHRTQHWFHGRIS--REESHRIIKQQG-LVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQ 57
Query: 557 IRSKPESGQ-FYLVE--KSYFDSLYSLISHYRTN 587
I + GQ F+ ++ + F L L+ Y+ N
Sbjct: 58 ILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQLN 91
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ + EL+F + +I+ + + + WW G +R FPSNYV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR-GIFPSNYV 54
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ + EL+F + +I+ + + + WW G +R FPSNYV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR-GIFPSNYV 54
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ALYD++A +DEL F ++ + + WW G K + FP+NYVA +
Sbjct: 9 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK-LGLFPANYVAPM 60
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
+ALY ++ R DEL F + II ++ WW+G G R PSNYVAE
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG-RTGLIPSNYVAE 57
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ALYD++A +DEL F ++ + + WW G K + FP+NYVA +
Sbjct: 7 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK-LGLFPANYVAPM 58
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ALYD++A +DEL F ++ + + WW G K + FP+NYVA +
Sbjct: 6 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK-LGLFPANYVAPM 57
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRA-EGGWWRGDYGGKRMHWFPSNYVAEI 840
+ V+ALYDY + DELSF ++ + E GW RG ++ +P+NYV I
Sbjct: 4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ALYD++A +DEL F ++ + + WW G K + FP+NYVA +
Sbjct: 5 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK-LGLFPANYVAPM 56
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVA 838
T ALYDY++R + +LSF K + V EG WW + + PSNYVA
Sbjct: 9 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 62
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGK 827
S TPG + S I V ALYDY+A + ++LSF K + V G WW+ +
Sbjct: 13 SNTPGIREAGS---EDIIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATR 68
Query: 828 RMHWFPSNYVAEIE 841
+ + PSNYVA ++
Sbjct: 69 KEGYIPSNYVARVD 82
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 24/116 (20%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
W+ GRLS R EA LL+ H G FLVR+S T GDY LS RV+H I S
Sbjct: 1 SWYWGRLS--RQEAVALLQGQRH---GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSG 55
Query: 562 E---------------SGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV 602
S + FDSL +L+ Y+ ++L + TL EPV
Sbjct: 56 PRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTT----TLIEPV 107
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR-------- 713
WY +R +A LL+ G FLVR S YV+S ++ H I
Sbjct: 2 WYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60
Query: 714 ----------VEGRLYTIGTTQFESLVELISYYERHPL 741
V IG +F+SL L+ +Y+ H L
Sbjct: 61 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL 98
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY+A +D+LSF K + +EG WW + PSNYVA ++
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 58
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 784 SITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
S +ALYDY+AR +D+LSF K + +EG WW + PS Y+A ++
Sbjct: 5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY---GGKRMHWFPSNYVA 838
A YDY A D+EL+F ++ I N+ + WW G+ G K + FPSNYV+
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGL--FPSNYVS 59
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
+ALY ++ R DEL F + II ++ WW+G G R PSNYVAE
Sbjct: 11 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG-RTGLIPSNYVAE 61
>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|B Chain B, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 110
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR----AEDK-IKH 709
N E EWY+ + +R +AE LL +GAF+VR S + V F +E+ IKH
Sbjct: 3 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKH 62
Query: 710 CRIRVEG----RLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 751
I+ R Y F+S+ LI Y++ + L YPV
Sbjct: 63 YHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPV 108
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 606 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
N E EWY+ + +R +AE LL +GAF+VR S
Sbjct: 3 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS 38
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN------HC 555
+W++ +S R +AE LL +G F+VR+S T G Y++S + + ++ H
Sbjct: 9 EWYNKSIS--RDKAEKLLLDTGK--EGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHY 63
Query: 556 RIRSKPES-GQFYLVEKSYFDSLYSLISHYRTN 587
I+ +S ++Y+ EK FDS+ LI +++ N
Sbjct: 64 HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYN 96
>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform,
Ensemble Of 20 Low Energy Structures
pdb|1LUK|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287cis, Energy
Minimized Average Structure
pdb|1LUM|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, 20 Low
Energy Structures
pdb|1LUN|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, Energy
Minimized Average Structure
Length = 110
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR----AEDK-IKH 709
N E EWY+ + +R +AE LL +GAF+VR S + V F +E+ IKH
Sbjct: 2 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKH 61
Query: 710 CRIRVEG----RLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 751
I+ R Y F+S+ LI Y++ + L YPV
Sbjct: 62 YHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPV 107
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 606 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
N E EWY+ + +R +AE LL +GAF+VR S
Sbjct: 2 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS 37
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN------HC 555
+W++ +S R +AE LL +G F+VR+S T G Y++S + + ++ H
Sbjct: 8 EWYNKSIS--RDKAEKLLLDTGK--EGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHY 62
Query: 556 RIRSKPES-GQFYLVEKSYFDSLYSLISHYRTN 587
I+ +S ++Y+ EK FDS+ LI +++ N
Sbjct: 63 HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYN 95
>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain
Bound To A Phosphopeptide
pdb|2EU0|A Chain A, The Nmr Ensemble Structure Of The Itk Sh2 Domain Bound To
A Phosphopeptide
Length = 109
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR----AEDK-IKH 709
N E EWY+ + +R +AE LL +GAF+VR S + V F +E+ IKH
Sbjct: 2 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKH 61
Query: 710 CRIRVEG----RLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 751
I+ R Y F+S+ LI Y++ + L YPV
Sbjct: 62 YHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPV 107
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 606 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPS 641
N E EWY+ + +R +AE LL +GAF+VR S
Sbjct: 2 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS 37
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN------HC 555
+W++ +S R +AE LL +G F+VR+S T G Y++S + + ++ H
Sbjct: 8 EWYNKSIS--RDKAEKLLLDTGK--EGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHY 62
Query: 556 RIRSKPES-GQFYLVEKSYFDSLYSLISHYRTN 587
I+ +S ++Y+ EK FDS+ LI +++ N
Sbjct: 63 HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYN 95
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWW-------RGDYGGKRMH-WFPSNYVAE 839
AL+DYQAR ++LSF + + + GWW +G G+++ + PSNYVAE
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK--RMHWFPSNYV 837
VK +YD QA NDDEL+F + +I + WW G G+ R FP ++V
Sbjct: 4 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 784 SITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWR------GDYGGKRMHWFPSNYV 837
S +ALYDY+AR +D+LSF K + +EG WW G+ G + PS Y+
Sbjct: 7 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETG-----YIPSPYL 61
Query: 838 AEIE 841
A ++
Sbjct: 62 APVD 65
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY---GGKRMHWFPSNYVA 838
A YDY A D+EL+F ++ I N+ + WW G+ G K + FPSNYV+
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGL--FPSNYVS 56
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
ALYDY+A +D+LSF K + +EG WW + PSNYVA +
Sbjct: 6 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY---GGKRMHWFPSNYVA 838
A YDY A D+EL+F ++ I N+ + WW G+ G K + FPSNYV+
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGL--FPSNYVS 55
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQ 843
I V ALYDY+A + ++LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 10 IIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVDSL 68
Query: 844 HNRE 847
E
Sbjct: 69 ETEE 72
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK-RMHWFPSNYV 837
T +A+YDY A+++DE+SF I NV + GW G R P+NY+
Sbjct: 8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
S V+AL+D+ + D EL F + I + ++ WW+G G+ FP NYV +
Sbjct: 1 GSTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQ-TGMFPRNYVTPV 57
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+V+AL+D+ + D EL F + I + ++ WW+G G+ FP NYV +
Sbjct: 2 SVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQ-TGMFPRNYVTPV 55
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
K L++Y +N+DEL II E GWW G K + FPSN+V
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK-LGLFPSNFV 53
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
S V+AL+D+ + D EL F + I + ++ WW+G G+ FP NYV +
Sbjct: 1 GSTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQ-TGMFPRNYVTPV 57
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSS--YVISFRAEDKIKHCRIR-VEG 716
K WY R AE+ L R DG+FL+R S +S Y + ++ + +R +E
Sbjct: 23 KPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEA 82
Query: 717 -RLYTIGTTQ-----FESLVELISYYERHPL 741
+ Y +G + F S+VE+++ ++ +PL
Sbjct: 83 TKQYALGKKKNGEEYFGSVVEIVNSHQHNPL 113
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 611 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNS 646
K WY R AE+ L R DG+FL+R S +S
Sbjct: 23 KPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDS 58
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY---GGKRMHWFPSNYVAEI 840
+A+YDY A ++DE+SF I NV + + GW G G M P+NYV I
Sbjct: 7 RAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGM--LPANYVEAI 60
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
I V ALYDY + + D+LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 4 IIVVALYDYVSWSPDDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVD 60
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK--RMHWFPSNYV 837
VK +YD QA NDDEL+F + +I + WW G G+ R FP ++V
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V+AL+D+ + D EL F + I + ++ WW+G G+ FP NYV +
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQ-TGMFPRNYVTAV 57
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
I V ALYDY+A + ++LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 1 IIVVALYDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVD 57
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK-RMHWFPSNYVAEI 840
+A+YDY A + DE+SF I NV + GW G R P+NYV I
Sbjct: 7 RAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
I V ALYDY + + D+LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 4 IIVVALYDYVSWSPDDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVD 60
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
T +A+ DY+ + E++ ++ V ++E GWW KR W P++++ ++
Sbjct: 12 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR-GWIPASFLEPLDSPDE 70
Query: 846 RED 848
ED
Sbjct: 71 TED 73
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
AS +ALYD++ N+ EL F + II+ + + W+ G G+ +FP NYV
Sbjct: 5 ASVGSDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQS-GFFPINYV 63
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ALYD++ N+ EL F + II+ + + W+ G G +FP NYV
Sbjct: 11 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHS-GFFPINYV 59
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 36.6 bits (83), Expect = 0.061, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
+ LYD++ N EL F + II+ + + W+ G G+ +FP NYV I P
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGES-GFFPINYVEVIVP 60
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
T +A+ DY+ + E++ ++ V ++E GWW KR W P++++ ++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR-GWIPASFLEPLDSPDE 71
Query: 846 RED 848
ED
Sbjct: 72 TED 74
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 36.2 bits (82), Expect = 0.070, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++P +
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLDPAQS 65
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
A + Y R ELSF + ++ RA WWRG++ G R P Y+
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMR-GLIPHKYI 62
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ + D E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 4 VLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 57
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
+ +ALY Y +NDDEL I+ + + + GW+ G K+ FP NYV +
Sbjct: 7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
T +A+ DY+ + E++ ++ V ++E GWW KR W P++++ ++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR-GWIPASFLEPLDSPDE 71
Query: 846 RED 848
ED
Sbjct: 72 TED 74
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
T +A+ DY+ + E++ ++ V ++E GWW KR W P++++ ++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR-GWIPASFLEPLDSPDE 71
Query: 846 RED 848
ED
Sbjct: 72 TED 74
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 788 KALYDYQARNDDELSFPKHAIISNV-TRAEGGWWRGDYGGKRMHWFPSNYV 837
KALY +A +D ELSF + NV E GW G GK P NYV
Sbjct: 14 KALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGK-TGLIPENYV 63
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYV 837
+ +ALY Y +NDDEL I+ + + + GW+ G K+ FP NYV
Sbjct: 7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 35.8 bits (81), Expect = 0.093, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + G R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNG-RQGFVPAAYVKKLD 62
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
WY + T ++A++ L+ P +G FL+R S + + IS + + RI + + +
Sbjct: 19 WYWGSMTVNEAKEKLKEAP-EGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRL 77
Query: 722 GTT--------QFESLVELISYY 736
+ QF+S+V LI YY
Sbjct: 78 DSIICVKSKLKQFDSVVHLIDYY 100
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ DE++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 62
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 793 YQARNDDELSFPKHAIISNVTRAEGGWWRGDY---GGKRMH-WFPSNYVAEIEPQHNR 846
Y A ++LS +I + + GWW+G+ G KR WFP+++V + P R
Sbjct: 16 YVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSER 73
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ DE++ K I++ + WW+ + R + P+ YV +++
Sbjct: 4 VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 57
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYV 837
A T ALY++ +L+F K +I+ + + ++ WW G GK FP+NYV
Sbjct: 2 AMATAVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKE-GIFPANYV 57
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + G R + P+ YV +++
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNG-RQGFVPAAYVKKLD 57
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 788 KALYDYQA-RNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ LY + R+ L F +I+ + +GGWW G+ WFP++YV
Sbjct: 7 RTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYV 57
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide
Length = 103
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 659 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKI--------KHC 710
D +YH T+ + E LL + DG FL+R SE+ + + + + KH
Sbjct: 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61
Query: 711 RIRVEGRLYTIGTTQFESLVELISYYER 738
R+E +T T F +L EL+S Y +
Sbjct: 62 YYRIETDAHT-PRTIFPNLQELVSKYGK 88
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 610 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSEN 643
D +YH T+ + E LL + DG FL+R SE+
Sbjct: 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSES 35
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+P V ALYDYQ + EL+ ++ + +E WWR + PS+Y+ E
Sbjct: 5 SPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEK 64
Query: 841 EP 842
P
Sbjct: 65 SP 66
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 776 DPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDY-----GGKRMH 830
D A P + L+D+++R D+ELSF + + +V R E WW G
Sbjct: 5 DQAHLGPKYV---GLWDFKSRTDEELSF-RAGDVFHVARKEEQWWWATLLDEAGGAVAQG 60
Query: 831 WFPSNYVAEIE 841
+ P NY+AE E
Sbjct: 61 YVPHNYLAERE 71
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEP 842
V+AL+D+ +D++L F K I+ + E WW D GKR P YV + P
Sbjct: 4 VRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKR-GMIPVPYVEKCRP 59
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + G R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-GDRQGFVPAAYVKKLD 62
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVT-RAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
S+ A YD++A DDELSF + I+ + + W++ + GK + P NY+ E++
Sbjct: 8 GSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKD-GFIPKNYI-EMK 65
Query: 842 PQ 843
P
Sbjct: 66 PH 67
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 780 FTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
+ P V ALYDYQ + EL+ ++ + +E WWR + PS+Y+ E
Sbjct: 15 WEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVE 74
Query: 840 IEPQH 844
P +
Sbjct: 75 KSPNN 79
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
ALY Y + +L+F + I VT+ +G WW G G R FPSNYV
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEIL-VTQKDGEWWTGSI-GDRSGIFPSNYV 59
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 793 YQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
YQ D E+SFP + + + E GWW + G+ W PS+Y+
Sbjct: 17 YQKVQDSEISFPAGVEVQVLEKQESGWWYVRF-GELEGWAPSHYL 60
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR 717
++ +Y T +A LL P+ G FL+R S + + +S + + K+ RI+ EG
Sbjct: 21 QESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGG 79
Query: 718 LYTIGT--------TQFESLVELISYYERHP 740
+++ + +F+ +++L+ +Y P
Sbjct: 80 SFSLQSDPRSTQPVPRFDCVLKLVHHYMPPP 110
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGG 826
I A +DY R ELSF K A + RA WW G + G
Sbjct: 10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNG 51
>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757)
Phosphopeptide
Length = 152
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR 717
++ +Y T +A LL P+ G FL+R S + + +S + + K+ RI+ EG
Sbjct: 32 QESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGG 90
Query: 718 LYTIGT--------TQFESLVELISYY 736
+++ + +F+ +++L+ +Y
Sbjct: 91 SFSLQSDPRSTQPVPRFDXVLKLVHHY 117
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
V ALY Y + D+LSF K + V G WW+ K+ + PSNYVA++
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKM-KVLEEHGEWWKAKSLLTKKEGFIPSNYVAKL 63
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR 551
V N ++G + FHG +S R A+ LL + +G++L+RES+ G Y+L+ + +
Sbjct: 43 VENRPKYYGRE-FHGMIS--REAADQLLI----VAEGSYLIRESQRQPGTYTLALRFGSQ 95
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLIS 582
+ R+ G+ ++ EK F+S++ L++
Sbjct: 96 TRNFRLYY---DGKHFVGEKR-FESIHDLVT 122
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V LYDYQ ++ EL+ K I++ + WW+ + G R + P+ Y+ +++
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNG-RQGFVPAAYLKKLD 62
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P++YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPASYVKKLD 62
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 145 STNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD------EQMFTDSYSHYSSDGQTVT 198
+ +L+E EVD + + FDEF ++ R M D E+ +D + + +
Sbjct: 53 TPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYI 112
Query: 199 ASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYFTFMEFI 246
E +++ ET + E ++ M+D D+ + + Y F+EF+
Sbjct: 113 DLEELKIMLQATGET-ITEDDIEELMKD--GDKNNDGRIDYDEFLEFM 157
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDY N ++L K + + WWR + + PSNYV E E
Sbjct: 4 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 58
>pdb|2EL8|A Chain A, Solution Structure Of The Human Stap2 Sh2 Domain
Length = 118
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 667 ATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR----AEDKIKHCRIRVEGRLYTIG 722
+R +A+ LL R P G L+RPS + ++ R ++H +++ EG Y I
Sbjct: 28 VSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVID 87
Query: 723 TTQ---FESLVELISYYERH 739
Q SL +++Y+ H
Sbjct: 88 VEQPFSCTSLDAVVNYFVSH 107
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 61
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEG-GWWRGDYGGKRMHWFPSNY 836
++A+Y Y+A+ DDE+S II+ + +G GW G+ G + FP++Y
Sbjct: 3 MEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLK-GLFPTSY 52
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAGYVKKLD 62
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD------E 180
+++ K++ + + + +L+E EVD + + FDEF ++ R M D E
Sbjct: 35 SISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKTE 94
Query: 181 QMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYF 240
+ +D + + + E +++ ET + E ++ M+D D+ + + Y
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKD--GDKNNDGRIDYD 151
Query: 241 TFMEFI 246
F+EF+
Sbjct: 152 EFLEFM 157
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 62
>pdb|1AOD|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 289
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 292 SESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETS 351
+++ + + L G R I++ D + +YHG V++TI +
Sbjct: 57 AQTQTMSLYQQLEAGIRYIDIRAKDNLN----IYHGPIFLNA-SLSGVLETITQFLKKNP 111
Query: 352 KYPVILSIED----NCSLPQQRVMAQIMLDIFKDMLLIHPVEKNETVLPSPHQLRGKILL 407
K +I+ ++D N S + Q +++I+KD P +P+ +RGKILL
Sbjct: 112 KETIIMRLKDEQNSNDSFDYR---IQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILL 168
Query: 408 ---KHKKLP 413
H K P
Sbjct: 169 LSENHTKKP 177
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 784 SITVKALYDYQARNDDELSFPKHAIISNV---TRAEGGWWRGDYGGKR 828
++ KALYD A + DELSF K I++ + T+ GWW G++
Sbjct: 3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQ 50
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
V+AL+D+ ++++L F K I+ + E WW + + P YV + P
Sbjct: 17 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRP 72
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGYVPAAYVKKLD 62
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGG 826
A +DY R+ ELSF K A + RA WW G + G
Sbjct: 11 AKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNG 48
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ +AL+D+ +D EL F +I + WW G WFP+++V
Sbjct: 31 VCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGE-GWFPASFV 82
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 62
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD------E 180
+++ K++ + + + +L+E EVD + + FDEF ++ R M D E
Sbjct: 35 SISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSE 94
Query: 181 QMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYF 240
+ +D + + + E +++ ET + E ++ M+D D+ + + Y
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKD--GDKNNDGRIDYD 151
Query: 241 TFMEFI 246
F+EF+
Sbjct: 152 EFLEFM 157
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-ADRQGFVPAAYVKKLD 62
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVT-RAEGGWWRGDYGGKRMHWFPSNYV 837
A +D+ A DDELSF K I+ + + W+R + GK PSNY+
Sbjct: 5 AKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKE-GLIPSNYI 53
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVT-RAEGGWWRGDYGGKRMHWFPSNYV 837
A +D+ A DDELSF K I+ + + W+R + GK PSNY+
Sbjct: 5 AKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKE-GLIPSNYI 53
>pdb|3L12|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
pdb|3L12|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
Length = 313
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTLT 331
E++ E + L G R +E D DG P+V H H L
Sbjct: 32 ENTLEGFAFTLAAGVRALEFDVVXTADGVPVVTHNHHLA 70
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 62
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV +++
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKLD 62
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
I V ALYDY + +LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 4 IIVVALYDYYSPFSWDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVARVD 60
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ +AL+D+ +D EL F +I + WW G WFP+++V
Sbjct: 37 VCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGE-GWFPASFV 88
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
VK LYD+ ARN +ELS K ++ V WW+ + + P N + E
Sbjct: 10 VKILYDFTARNANELSVLKDEVLE-VLEDGRQWWKLRSRSGQAGYVPCNILGE 61
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ V A +DY A+ D EL K+ + + ++ WWR R + PSNYV
Sbjct: 32 VIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYV 83
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V ALYDY N ++L K + + WWR + + PSNYV E E
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ +AL+D+ +D EL F +I WW G WFP+++V
Sbjct: 68 VCAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGE-GWFPASFV 119
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V ALYDYQ ++ E++ K I++ + WW+ + R + P+ YV ++
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKL 72
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
+A+Y Y+ +N+DEL + + + + + GW+ G ++ FP NYVA +
Sbjct: 11 RAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 775 MDPASFTPASITVK-----------ALYDYQARNDDELSFPKHAIISNVTRAEGGWWR 821
MD F PA+ K ALYDYQ ++ E++ K I++ + WW+
Sbjct: 1 MDRQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK 58
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWR-------GDYGGKRMHWFPSNYVAE 839
V ALYDYQ ++ E++ K I++ + WW+ D +R + P+ YV +
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVKK 68
Query: 840 IE 841
++
Sbjct: 69 LD 70
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ V A +DY A+ D EL K+ + + ++ WWR R + PSNYV
Sbjct: 5 VIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYV 56
>pdb|2PLC|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 274
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 303 LRQGCRCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIED- 361
L G R I++ D + +YHG + V++TI + K +I+ ++D
Sbjct: 54 LEAGIRYIDIRAKDNLN----IYHG-PIFLNASLSGVLETITQFLKKNPKETIIMRLKDE 108
Query: 362 NCSLPQQRVMAQIMLDIFKDMLLIHPVEKNETVLPSPHQLRGKILL---KHKKLP 413
S Q +++I+KD P +P+ +RGKILL H K P
Sbjct: 109 QNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKP 163
>pdb|2CR4|A Chain A, Solution Structure Of The Sh2 Domain Of Human Sh3bp2
Protein
Length = 126
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 513 AEAEDLLRRYSHLG---DGTFLVRESETFIGDYSLSFW--WQGRVNHCRIRSKPESGQFY 567
E E L + S G DG + +R S T G L W +V + RI K +FY
Sbjct: 27 CEVERLFKATSPRGEPQDGLYCIRNSSTKSGKV-LVVWDETSNKVRNYRIFEK--DSKFY 83
Query: 568 LVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEP 601
L + F S+ S++ HY T+ L S + L+ L+ P
Sbjct: 84 LEGEVLFVSVGSMVEHYHTHVLPSHQSLL-LRHP 116
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+P V ALYDYQ + EL+ + +E WWR + PS+Y+ E
Sbjct: 2 SPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK 61
Query: 841 EP 842
P
Sbjct: 62 SP 63
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+P V ALYDYQ + EL+ + +E WWR + PS+Y+ E
Sbjct: 2 SPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK 61
Query: 841 EP 842
P
Sbjct: 62 SP 63
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its Relationship
To Sh2 In The Sh(32) Construct, 20 Structures
Length = 62
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+P ALYD+ A D+ LS K + + G W W PSNY+ +
Sbjct: 2 SPGGSLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 61
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 793 YQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
Y +++ DE+ F K + + + GWW Y GK W P++Y+ +
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKE-GWAPASYLKK 62
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V LYDYQ ++ EL+ K I++ + WW+ + R + P+ Y+ +++
Sbjct: 9 VLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEV-NDRQGFIPAAYLKKLD 62
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD------E 180
+++ K++ + + + +L+E EVD + + FDEF ++ R M D E
Sbjct: 35 SISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSE 94
Query: 181 QMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYF 240
+ +D + + + + +++ ET + E ++ M+D D+ + + Y
Sbjct: 95 EELSDLFRMWDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKD--GDKNNDGRIDYD 151
Query: 241 TFMEFI 246
F+EF+
Sbjct: 152 EFLEFM 157
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 789 ALYDYQARNDDELSFPKHAII-----SNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
A+Y ++ARN +ELS + + +VT WW + GK+ + PSNY+ + E
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVT-GNTEWWLAEVNGKK-GYVPSNYIRKTE 73
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY A +LSF K + G WW + PSNYVA ++
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGD-YGGKRMHWFPSNYVAEIEPQ 843
ALYD++ ND+EL + I+ + GW + G + P +V+ I+P+
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE 65
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY A +LSF K + G WW + PSNYVA ++
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVAPVD 64
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 111 ERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCK--------MSTNKLREHFQEVDTRKTN 162
ER RK F L G V+ ++ L +V + + R +D+ T
Sbjct: 730 ERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 789
Query: 163 ELAFDEFSILYNRIMFDEQMFTDSYSHYSSD-GQTVTASEL 202
+L F+EF L+N I + + Y + +D T+ ++EL
Sbjct: 790 KLGFEEFKYLWNNI----KKWQGIYKRFETDRSGTIGSNEL 826
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGG-------KRMHWFPSNYVAE 839
V ALYDYQ ++ E++ K I++ + WW+ + +R + P+ YV +
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVKK 68
Query: 840 IE 841
++
Sbjct: 69 LD 70
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
ALYD+ A D+ LS K + + G W W PSNY+ +
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 56
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGD----YGGK---RMHWFPSNYVAE 839
V ALYDYQ ++ E++ K I++ + WW+ + GK R + P+ YV +
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 68
Query: 840 IE 841
++
Sbjct: 69 LD 70
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGD----YGGK---RMHWFPSNYVAE 839
V ALYDYQ ++ E++ K I++ + WW+ + GK R + P+ YV +
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63
Query: 840 IE 841
++
Sbjct: 64 LD 65
>pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|C Chain C, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|D Chain D, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|E Chain E, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|F Chain F, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
Length = 248
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 268 MTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHG 327
MTK +SH N +F+ E++ A L+QG IELD + DG V H
Sbjct: 1 MTKIVSHRGAN----------RFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHD 50
Query: 328 HTL 330
TL
Sbjct: 51 ETL 53
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
ALYD+ A D+ LS K + + G W W PSNY+ +
Sbjct: 9 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 60
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQ 843
ALYD+ A D+ LS K + + G W W PSNY+ + +
Sbjct: 7 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSK 61
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ ++++L F K I+ + E WW + + P YV
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ ++++L F K I+ + E WW + + P YV
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V LYDYQ ++ EL+ K I++ + WW+ + R + P+ Y+ +++
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV-NDRQGFVPAAYLKKLD 62
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR 702
K WY P +R QA LL+ GAFL+R S + +Y ++ +
Sbjct: 20 KFWYKPHLSRDQAIALLKD-KDPGAFLIRDSHSFQGAYGLALK 61
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 611 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
K WY P +R QA LL+ GAFL+R S + +Y
Sbjct: 20 KFWYKPHLSRDQAIALLKD-KDPGAFLIRDSHSFQGAY 56
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
P V ALYDYQ + EL+ + +E WWR + PS+Y+ E
Sbjct: 18 PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 75
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 111 ERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCK--------MSTNKLREHFQEVDTRKTN 162
ER RK F L G V+ ++ L +V + + R +D+ T
Sbjct: 3 ERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 163 ELAFDEFSILYNRI 176
+L F+EF L+N I
Sbjct: 63 KLGFEEFKYLWNNI 76
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR 702
K WY P +R QA LL+ GAFL+R S + +Y ++ +
Sbjct: 5 KFWYKPHLSRDQAIALLKD-KDPGAFLIRDSHSFQGAYGLALK 46
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 611 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
K WY P +R QA LL+ GAFL+R S + +Y
Sbjct: 5 KFWYKPHLSRDQAIALLKD-KDPGAFLIRDSHSFQGAY 41
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ ++++L F K I+ + E WW + + P YV
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVT-RAEGGWWRGDYGGKRMHWFPSNYV 837
A D++A DDELSF + I+ + ++ W++ + GK + P NY+
Sbjct: 5 AKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKD-GFIPKNYI 53
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 111 ERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCK--------MSTNKLREHFQEVDTRKTN 162
ER RK F L G V+ ++ L +V + + R +D+ T
Sbjct: 14 ERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 73
Query: 163 ELAFDEFSILYNRI 176
+L F+EF L+N I
Sbjct: 74 KLGFEEFKYLWNNI 87
>pdb|2XP1|A Chain A, Structure Of The Tandem Sh2 Domains From Antonospora
Locustae Transcription Elongation Factor Spt6
Length = 178
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 670 SQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESL 729
+++E+ LR D FL+R ++ A D H +I YT FE +
Sbjct: 23 TESENYLRSSTDD--FLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSNKHFEDI 80
Query: 730 VELISYYER 738
E+IS Y R
Sbjct: 81 DEVISVYVR 89
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 386 HPVEKNETVLPSPHQLRGKILLKHKKLPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRVEG 445
HP+ KN V S + LR L C + K A D H +I
Sbjct: 14 HPLFKNFNVTESENYLRSST---DDFLIRKGSRHGYCVLVI---KFASDVFVHMKIEEHS 67
Query: 446 RLYTIGTTQFESLVELISYYER 467
YT FE + E+IS Y R
Sbjct: 68 EHYTCSNKHFEDIDEVISVYVR 89
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B And
Elongin-C At 2.55a Resolution
Length = 187
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHC 710
VP Q + Y + AE LL P +G FL+R S ++ + +SFR + H
Sbjct: 25 VPDLLQINNNPCYWGVMDKYAAEALLEGKP-EGTFLLRDSAQEDYLFSVSFRRYSRSLHA 83
Query: 711 RI 712
RI
Sbjct: 84 RI 85
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal
Biogenesis Factor 13
Length = 93
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG----GWWRGDY 824
SG+ G + AS + +A YD+ A +D+E+SF +++ + + GW
Sbjct: 3 SGSSG-TNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL 61
Query: 825 GGKRMHWFPSNYVAEIEPQHNRE 847
G+ P+NYV + + R+
Sbjct: 62 DGQTTGLIPANYVKILGKRRGRK 84
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 417 DEQTPCAIAKDEGKLAEDKIKHCRIRVEGRLYTIGTTQF--------ESLVELISYY 465
DE+T AK K++E++IK R+ G L G+T F SL+ L +Y+
Sbjct: 441 DERTKQRTAKAYLKVSEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLISLFTYF 497
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 417 DEQTPCAIAKDEGKLAEDKIKHCRIRVEGRLYTIGTTQF--------ESLVELISYY 465
DE+T AK K++E++IK R+ G L G+T F SL+ L +Y+
Sbjct: 408 DERTKQRTAKAYLKVSEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLISLFTYF 464
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 773 GYMDPASFTP---------ASITVKALYDYQARNDDELSFPKHAIISNVTR---AEGGWW 820
GY D A++ S V AL+DY A DELSF + ++ + R E WW
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWW 193
Query: 821 RGDYGGKRMHWFPSNYVA---EIEPQHNR 846
G+ + P NY ++PQ ++
Sbjct: 194 WAALHGQE-GYVPRNYFGLFPRVKPQRSK 221
>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3KAY|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3NMN|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|C Chain C, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 178
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 727 ESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPG 773
E++ ++ ++R +YK VSED R+G D N +SG P
Sbjct: 37 ETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPA 83
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 128 VNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMF 178
V+L + K FL V ++ +K F +D K +++ DEF + N +F
Sbjct: 119 VSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLF 169
>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 186
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 727 ESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPG 773
E++ ++ ++R +YK VSED R+G D N +SG P
Sbjct: 46 ETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPA 92
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 111 ERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCK--------MSTNKLREHFQEVDTRKTN 162
ER RK F L G V+ ++ L +V + + R +D+ T
Sbjct: 10 ERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 69
Query: 163 ELAFDEFSILYNRI 176
+L F+EF L+N I
Sbjct: 70 KLGFEEFKYLWNNI 83
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ ++++L F K I+ + E WW + + P YV
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
++ +A++D+ + EL+F +I + + WW G + WFP+++V
Sbjct: 11 VSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEE-GWFPASFV 62
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
A+ DY A ++ +LSF + I + + WW G+ G + P+N+V +
Sbjct: 12 AIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGC-CGYIPANHVGK 61
>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
pdb|3NEF|A Chain A, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEF|B Chain B, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEG|A Chain A, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
pdb|3NEG|B Chain B, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
Length = 202
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 727 ESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPG 773
E++ ++ ++R +YK VSED R+G D N +SG P
Sbjct: 51 ETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPA 97
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 128 VNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMF 178
V+L + K FL V ++ +K F +D K +++ DEF + N +F
Sbjct: 119 VSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLF 169
>pdb|2A0I|A Chain A, F Factor Trai Relaxase Domain Bound To F Orit
Single-Stranded Dna
Length = 330
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGW 819
V AL+++ D E HA+++NVT+ G W
Sbjct: 140 VMALFNHDTSRDQEPQLHTHAVVANVTQHNGEW 172
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAEGG--WWRGDYGGKRMHWFPSNYVA 838
S V+ LY + + ++EL+F K + + + E WW+ ++ P NYV
Sbjct: 1 GSHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 58
>pdb|1P4D|A Chain A, F Factor Trai Relaxase Domain
pdb|1P4D|B Chain B, F Factor Trai Relaxase Domain
pdb|1P4D|C Chain C, F Factor Trai Relaxase Domain
Length = 330
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGW 819
V AL+++ D E HA+++NVT+ G W
Sbjct: 140 VMALFNHDTSRDQEPQLHTHAVVANVTQHNGEW 172
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD------E 180
+++ K++ + + + +L+E EVD + + FDEF ++ R M D E
Sbjct: 35 SISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSE 94
Query: 181 QMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYF 240
+ +D + + + +++ ET + E ++ M+D D+ + + Y
Sbjct: 95 EELSDLFRMXDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKD--GDKNNDGRIDYD 151
Query: 241 TFMEFI 246
F+EF+
Sbjct: 152 EFLEFM 157
>pdb|2Q7T|A Chain A, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base
pdb|2Q7T|B Chain B, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base
pdb|2Q7U|A Chain A, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base And Imidodiphosphate
pdb|2Q7U|B Chain B, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base And Imidodiphosphate
Length = 301
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGW 819
V AL+++ D E HA+++NVT+ G W
Sbjct: 140 VMALFNHDTSRDQEPQLHTHAVVANVTQHNGEW 172
>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|B Chain B, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|C Chain C, Crystal Structure Of (+)-Aba-Bound Pyl1
Length = 208
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 727 ESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPG 773
E++ ++ ++R +YK VSED R+G D N +SG P
Sbjct: 67 ETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPA 113
>pdb|4GGF|C Chain C, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|L Chain L, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|T Chain T, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|V Chain V, Crystal Structure Of Mn2+ Bound Calprotectin
Length = 114
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 131 KDIKTFLPRVNCKMSTNKLREHFQE-VDTRKTNELAFDEFSILYNRI 176
KD++ FL + N K+ EH E +DT +L+F+EF +L R+
Sbjct: 43 KDLQNFLKKEN---KNEKVIEHIMEDLDTNADKQLSFEEFIMLMARL 86
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ ++++L F K I+ + E WW + + P YV
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 111 ERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCK--------MSTNKLREHFQEVDTRKTN 162
ER RK F L G V+ ++ L +V + + R +D+ T
Sbjct: 14 ERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTSRSMVAVMDSDTTG 73
Query: 163 ELAFDEFSILYNRI 176
+L F+EF L+N I
Sbjct: 74 KLGFEEFKYLWNNI 87
>pdb|1XK4|C Chain C, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|D Chain D, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|G Chain G, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|H Chain H, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|K Chain K, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|L Chain L, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
Length = 113
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 131 KDIKTFLPRVNCKMSTNKLREHFQE-VDTRKTNELAFDEFSILYNRI 176
KD++ FL + N K+ EH E +DT +L+F+EF +L R+
Sbjct: 42 KDLQNFLKKEN---KNEKVIEHIMEDLDTNADKQLSFEEFIMLMARL 85
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V LYDYQ ++ E++ K I++ + WW+ + R + P+ Y+ +++
Sbjct: 9 VLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEV-NDRQGFVPAAYLKKLD 62
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 131 KDIKTFLPRVNCKMSTNKLREHFQE-VDTRKTNELAFDEFSILYNRI 176
KD++ FL + N K+ EH E +DT +L+F+EF +L R+
Sbjct: 42 KDLQNFLKKEN---KNEKVIEHIMEDLDTNADKQLSFEEFIMLMARL 85
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 33 MREVKEVRVGKCFKDFDRWPEESGRVDAARCFIVLYGSEFKLKTLSIAAFSEKECGLWVT 92
+ +++EVR+G + +++ + + RCF +++ + TL + A S + WV
Sbjct: 60 IEDIQEVRMGHRTEGLEKFARD---IPEDRCFSIVFKDQ--RNTLDLIAPSPADAQHWVQ 114
Query: 93 GLRYLV 98
GLR ++
Sbjct: 115 GLRKII 120
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+AL+D+ ++++L F K I+ + E WW + + P YV
Sbjct: 3 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 53
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD------E 180
+++ K++ + + + +L+E EVD + + FDEF ++ R M D E
Sbjct: 35 SISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSE 94
Query: 181 QMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYF 240
+ +D + + + + +++ ET + E ++ M+D D+ + + Y
Sbjct: 95 EELSDLFRMFDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKD--GDKNNDGRIDYD 151
Query: 241 TFMEFI 246
++EF+
Sbjct: 152 EWLEFM 157
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 195 QTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQ--RNVQEPYFTFMEFIDFLFSK 252
Q +T ++ NF RE H+RD+ D +++ +P+ TF FI+ K
Sbjct: 136 QDLTYGKIHNFKTREDAVI------YEAHVRDFTSDPAIAKDLTKPFGTFEAFIE----K 185
Query: 253 QNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESS 295
+ L D H + LS+YF+N N D SS S+
Sbjct: 186 LDYLKD--LGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSN 226
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 195 QTVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQ--RNVQEPYFTFMEFIDFLFSK 252
Q +T ++ NF RE H+RD+ D +++ +P+ TF FI+ K
Sbjct: 137 QDLTYGKIHNFKTREDAVI------YEAHVRDFTSDPAIAKDLTKPFGTFEAFIE----K 186
Query: 253 QNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESS 295
+ L D H + LS+YF+N N D SS S+
Sbjct: 187 LDYLKD--LGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSN 227
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRA-EGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDYQA +LSF K + + G WW + PSNYVA ++
Sbjct: 11 ALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPVD 65
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V LYDYQ ++ E++ K I++ + WW+ + R + P+ Y+ +++
Sbjct: 9 VLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEV-DDRQGFIPAAYLKKLD 62
>pdb|2SCP|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|2SCP|B Chain B, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|1Q80|A Chain A, Solution Structure And Dynamics Of Nereis Sarcoplasmic
Calcium Binding Protein
Length = 174
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 153 FQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDSYSHYSSDGQTVTASEL-----TNFLI 207
F+ VDT + N ++ DE+ I + + D+ M S+ ++ + + E ++F +
Sbjct: 100 FRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFM 159
Query: 208 REQNETN 214
+ + TN
Sbjct: 160 NDGDSTN 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,226,153
Number of Sequences: 62578
Number of extensions: 1212339
Number of successful extensions: 3596
Number of sequences better than 100.0: 400
Number of HSP's better than 100.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 2762
Number of HSP's gapped (non-prelim): 747
length of query: 851
length of database: 14,973,337
effective HSP length: 107
effective length of query: 744
effective length of database: 8,277,491
effective search space: 6158453304
effective search space used: 6158453304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)