RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8789
(851 letters)
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 323 bits (827), Expect = 2e-97
Identities = 128/595 (21%), Positives = 232/595 (38%), Gaps = 39/595 (6%)
Query: 27 AKDEVDMREVKEVRVGKCFKDFDR-------WPEESGRVDAARCFIVLYGSEF-KLKTLS 78
D +D+ +++ R G+ + + V+ G + L+
Sbjct: 59 EVDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDARLEEKLMTVVSGPDPVNTVFLN 118
Query: 79 IAAFSEKECGLWVTGLRYLVPDTLRAPYPLNVERWLRKHFYSLEG---PRETVNLKDIKT 135
A + +W L L + L +LRK + L+ + +K+I
Sbjct: 119 FMAVQDDTAKVWSEELFKLAMNILAQNASR--NTFLRKAYTKLKLQVNQDGRIPVKNILK 176
Query: 136 FLP--RVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDSYSHYSSD 193
+ + + F ++ + +E + + F N++ + +
Sbjct: 177 MFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCLRPDIDKILLEIGAKG 236
Query: 194 GQTVTASELTNFLIREQNETNVNE-------REVSRHMRDYLQDEQRNVQEPYFTFMEFI 246
+T +L +F+ ++Q + +NE +R + + + Q+ ++ + F
Sbjct: 237 KPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFS 296
Query: 247 DFLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQG 306
+L ++N + + + DMT+PLS YFINSSHNTYLT Q + SS E Y + L G
Sbjct: 297 RYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWG 356
Query: 307 CRCIELDCWDG--PDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNC- 363
CRC+ELD W G P+ P + HG T+TT++ +DV++ I + AF+TS YPVILS E++
Sbjct: 357 CRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVD 416
Query: 364 SLPQQRVMAQIMLDIFKDMLLIHPVE----KNETVLPSPHQLRGKILLKHKKLPEGSDEQ 419
S QQ MA+ IF D LLI P++ LPSP L G+IL+K+KK S
Sbjct: 417 SAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNKKRHRPSAGG 476
Query: 420 TPCAIAKDEGKLAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYP 479
A K + + + E +G+ +S L + E +E
Sbjct: 477 PDSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSCPGLSNGEEVGLEKPSLEPQKS 536
Query: 480 VSEDLIQRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI 539
+ ++ + R + ++ + + + S
Sbjct: 537 LGDEGLNRGPYVLGPA--DREDEEEDEEEEEQTDPKKPTTDEGTASSEVNATEEMSTLVN 594
Query: 540 GDYSLSF----WWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLR 590
+ F + R + S E+ + KS + + + + R
Sbjct: 595 YIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPME----FVEYNKQQLSR 645
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 314 bits (805), Expect = 1e-94
Identities = 118/444 (26%), Positives = 198/444 (44%), Gaps = 31/444 (6%)
Query: 28 KDEVDMREVKEVRVGKCFKDFDRWP--------EESGRVDAARCFIVLYGSEF-KLKTLS 78
+D+ V+++R K K S +C + +G + L+
Sbjct: 62 TQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSNIPLQDKCVTICHGYNYIDLEWTH 121
Query: 79 IAAFSEKECGLWVTGLRYLVPDTLRAPYPLNVERWLRKHFYS--LEGPRETVNLKDIKTF 136
+ A + W + + L W + +F +E + + +K I+
Sbjct: 122 LVAENSSVAKKWSEEVFSYAYNLLSLNKNQL-GEWEKLYFRLTTVEMEKNKIPVKAIQKC 180
Query: 137 LPRVNC-----KMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDSYSHYS 191
L + + K+ + D FD F Y ++ ++ + S
Sbjct: 181 LSKDKDDRARISKALEKIGWPSGKNDAIDLKAFDFDTFFKFYLALLERSEIE-GIFKELS 239
Query: 192 SDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYLQD---------EQRNVQEPYFTF 242
+ +T +FL Q ++++ + + ++ ++ T
Sbjct: 240 KNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDAQCEALINDYESAVNKKGKKKGQLTK 299
Query: 243 MEFIDFLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRC 302
+ FL ++N L + +M L+ Y+INSSHNTYLTG Q + +SS E Y +
Sbjct: 300 EGLLYFLMCEENNLTPMHRLDLGANMKLTLAAYYINSSHNTYLTGHQLTGKSSVEIYRQV 359
Query: 303 LRQGCRCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDN 362
L GCRC+ELDCWDG DG PI+ HG T+ T++ FKDVV I + AF+ S YPVILS E++
Sbjct: 360 LLTGCRCLELDCWDGKDGEPIITHGFTMCTEVLFKDVVYAIAESAFKVSDYPVILSFENH 419
Query: 363 CSLPQQRVMAQIMLDIFKDMLLIHPVE----KNETVLPSPHQLRGKILLKHKKLPEGSDE 418
CS+ QQ+++AQ + F ++LL P++ K LP+P+ LR KIL+K+KK+ +G+ +
Sbjct: 420 CSVAQQKLLAQYCNEAFGELLLDKPIDGHPLKPGVPLPTPYDLRKKILIKNKKMHKGTGD 479
Query: 419 QTPCAIAKDEGKLAEDKIKHCRIR 442
A DE K +K K
Sbjct: 480 DEELAGLTDEEKKKIEKEKKDAGT 503
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 309 bits (791), Expect = 1e-94
Identities = 117/310 (37%), Positives = 176/310 (56%), Gaps = 3/310 (0%)
Query: 110 VERWLRKHFYSLEGPRE-TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDE 168
++ W+ + ++ +N K++K FL +N ++ R+ F+E D +T+ L +E
Sbjct: 9 LQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEE 68
Query: 169 FSILYNRIMFDEQMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHMRDYL 228
Y + ++ ++ + +T++ L FL +Q E + Y
Sbjct: 69 IETFYKMLTQRAEID-RAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYE 127
Query: 229 QDEQRNVQEPYFTFMEFIDFLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGD 288
E + T F+ +L S + + ++QDM +PLSHY ++SSHNTYL D
Sbjct: 128 PSET-AKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLED 186
Query: 289 QFSSESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAF 348
Q + SS EAY+R L +GCRC+ELDCWDGP+ PI+YHG+T T+KI F DV++ IRD+AF
Sbjct: 187 QLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAF 246
Query: 349 ETSKYPVILSIEDNCSLPQQRVMAQIMLDIFKDMLLIHPVEKNETVLPSPHQLRGKILLK 408
+ S YPVILS+E++CSL QQRVMA+ + I +LL P++ T LPSP QL+GKILLK
Sbjct: 247 KASPYPVILSLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLK 306
Query: 409 HKKLPEGSDE 418
KKL
Sbjct: 307 GKKLGGLLPA 316
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 308 bits (788), Expect = 2e-92
Identities = 137/533 (25%), Positives = 210/533 (39%), Gaps = 38/533 (7%)
Query: 28 KDEVDMREVKEVRVGKCFKDFDRWP-------EESGRVDAARCFIVLYGSEF-KLKTLSI 79
+ +D+ +++ R GK K + + V+ G + L +
Sbjct: 56 MEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGPDMVDLTFHNF 115
Query: 80 AAFSEKECGLWVTGLRYLVPDTLRAPYPLNVERWLRKHFYSL---EGPRETVNLKDIKTF 136
++ E W + LV L A +L K L + +K+
Sbjct: 116 VSYKENVGKAWAEDVLALVKHPLTANASR--STFLDKILVKLKMQLNSEGKIPVKNFFQM 173
Query: 137 LPRVNCKMSTNKLREHFQEV--DTRKTNELAFDEFSILYNRIMFDEQMFTDSYSHYSSDG 194
P ++ H + D + + + ++ S+++
Sbjct: 174 FPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCPRPEIDEIFTSYHAKAK 233
Query: 195 QTVTASELTNFLIREQNETNVNEREVSRHMRDYLQD-------EQRNVQEPYFTFMEFID 247
+T LT F+ ++Q ++ +N D +Q N Q + +
Sbjct: 234 PYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVW 293
Query: 248 FLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGC 307
FL +N + Q +H DMT+PL+HYFINSSHNTYLT QFS SS E Y + L GC
Sbjct: 294 FLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGC 353
Query: 308 RCIELDCWDG--PDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNCSL 365
RC+ELDCW G PD PI+ HG T+TT I FK+ ++ I + AF+TS YP+ILS E++
Sbjct: 354 RCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDS 413
Query: 366 P-QQRVMAQIMLDIFKDMLLIHPVE----KNETVLPSPHQLRGKILLKHKKLPEGSDEQT 420
P QQ MA+ IF DMLL P+E K LPSP LRGKIL+K+KK +
Sbjct: 414 PRQQAKMAEYCRTIFGDMLLTEPLEKFPLKPGVPLPSPEDLRGKILIKNKKNQFSGPTSS 473
Query: 421 PCAIAKDEGKLAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHP-----LYKKIE 475
+ + EG + E E + E
Sbjct: 474 SKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAG 533
Query: 476 LWYPVSEDLIQRM----GLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSH 524
L E++ + + E + + S +A DLL + S
Sbjct: 534 LEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASV 586
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 228 bits (583), Expect = 1e-69
Identities = 125/276 (45%), Positives = 160/276 (57%), Gaps = 58/276 (21%)
Query: 498 HFGEKWFHGRLSGG---RAEAEDLLRRYSHLG---DGTFLVRESETFIGDYSLSFWWQGR 551
H EKWFHG+L G R AE LL Y DG+FLVRESETF+GDY+LSFW G+
Sbjct: 1 HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 552 VNHCRIRSKPESGQ--FYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHE 609
V HCRI S+ ++G F+L + FDSLY LI+HY+ LR EF + L EPVPQ N HE
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHE 120
Query: 610 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATR 669
KEWYH + TR+QAE +L RVP DGAFLVR N
Sbjct: 121 SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPN------------------------ 156
Query: 670 SQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESL 729
SY ISFRAE KIKHCR++ EG+ +G ++F+SL
Sbjct: 157 --------------------------SYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSL 190
Query: 730 VELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDD 765
V+LISYYE+HPLY+K++L YP++E+ ++++G D
Sbjct: 191 VDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPD 226
Score = 121 bits (306), Expect = 2e-31
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 431 LAEDKIKHCRIRV-----EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLI 485
K++HCRI + + F+SL +LI++Y++ PL
Sbjct: 56 WRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPV-- 113
Query: 486 QRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLS 545
P H ++W+H L+ RA+AE +L R DG FLVR+ Y++S
Sbjct: 114 -------PQTNAHESKEWYHASLT--RAQAEHMLMRVPR--DGAFLVRKRNE-PNSYAIS 161
Query: 546 FWWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQP 605
F +G++ HCR++ + GQ ++ S FDSL LIS+Y + + L+ P+ +
Sbjct: 162 FRAEGKIKHCRVQ---QEGQTVMLGNSEFDSLVDLISYYEKH---PLYRKMKLRYPINEE 215
Query: 606 NQHED 610
+
Sbjct: 216 ALEKI 220
Score = 75.7 bits (186), Expect = 1e-15
Identities = 32/64 (50%), Positives = 52/64 (81%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGL 490
AE KIKHCR++ EG+ +G ++F+SLV+LISYYE+HPLY+K++L YP++E+ ++++G
Sbjct: 163 RAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGT 222
Query: 491 GVPN 494
P+
Sbjct: 223 AEPD 226
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 209 bits (532), Expect = 5e-62
Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 12/255 (4%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+F G ++ R EAED L + + DG +L+R+S ++G ++LS + +H I +
Sbjct: 5 LPFFFGNIT--REEAEDYLVQG-GMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERE 61
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQP-NQHEDKEWYHPTAT 619
G + + S L ++ S + L++P +P +
Sbjct: 62 LN-GTYAIAGGRTHASPADLCHYHSQE---SDGLVCLLKKPFNRPQGVQPKTGPFEDLKE 117
Query: 620 RSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAED-LLRR 678
E + + G L + + E + HE W+H +R ++E +L
Sbjct: 118 NLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIG 177
Query: 679 VPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYY 736
++G FL+R +N+ SY + E K+ H RI G+L +F++L +L+ +Y
Sbjct: 178 SKTNGKFLIRARDNNG-SYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHY 236
Query: 737 ERHPLYKKIELWYPV 751
L P
Sbjct: 237 SYKADGLLRVLTVPC 251
Score = 120 bits (301), Expect = 2e-30
Identities = 44/212 (20%), Positives = 68/212 (32%), Gaps = 48/212 (22%)
Query: 433 EDKIKHCRIR--VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGL 490
K H I + G G S +L Y+ + L P + +
Sbjct: 50 GRKAHHYTIERELNGTYAIAGGRTHASPADLCHYHSQESDGLVCLLKKPFNRPQGVQPKT 109
Query: 491 GV--------------------------------------PNDELHFGEKWFHGRLSGGR 512
G H WFHG++S R
Sbjct: 110 GPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKIS--R 167
Query: 513 AEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPESGQFYLVEKS 572
E+E ++ S +G FL+R + G Y+L +G+V H RI G+ + E
Sbjct: 168 EESEQIVLIGSKT-NGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKT-GKLSIPEGK 224
Query: 573 YFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
FD+L+ L+ HY + L L P +
Sbjct: 225 KFDTLWQLVEHYSYK---ADGLLRVLTVPCQK 253
Score = 94.2 bits (234), Expect = 1e-21
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 658 EDKEWYHPTATRSQAEDLLRRV-PSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR--V 714
++ TR +AED L + SDG +L+R S N + +S K H I +
Sbjct: 3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIEREL 62
Query: 715 EGRLYTIGTTQFESLVELISYYERHP 740
G G S +L Y+ +
Sbjct: 63 NGTYAIAGGRTHASPADLCHYHSQES 88
Score = 54.2 bits (130), Expect = 5e-08
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 431 LAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 480
L E K+ H RI G+L +F++L +L+ +Y L P
Sbjct: 200 LHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLRVLTVPC 251
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 206 bits (526), Expect = 4e-61
Identities = 55/257 (21%), Positives = 94/257 (36%), Gaps = 10/257 (3%)
Query: 498 HFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRI 557
+F+G +S RAEAE+ L+ + + DG FL+R+ +G Y LS R +H I
Sbjct: 3 AAHLPFFYGSIS--RAEAEEHLKL-AGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPI 59
Query: 558 RSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYHPT 617
+ G + + L Y + L + +
Sbjct: 60 ERQLN-GTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLR--KPCNRPSGLEPQPGVFDCL 116
Query: 618 ATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLR 677
+ + + +G L + + E + HE WYH + TR +AE L
Sbjct: 117 RDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLY 176
Query: 678 RVP-SDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--EGRLYTIGTTQFESLVELIS 734
+DG FL+RP + +Y +S + H I G+ T+F++L +L+
Sbjct: 177 SGAQTDGKFLLRPRKEQG-TYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVE 235
Query: 735 YYERHPLYKKIELWYPV 751
Y + L
Sbjct: 236 YLKLKADGLIYCLKEAC 252
Score = 124 bits (313), Expect = 5e-32
Identities = 41/211 (19%), Positives = 65/211 (30%), Gaps = 48/211 (22%)
Query: 433 EDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQR--- 487
+ + H I G G EL +Y R P L P +
Sbjct: 51 DVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQP 110
Query: 488 -----------------------------------MGLGVPNDELHFGEKWFHGRLSGGR 512
+ H W+H L+ R
Sbjct: 111 GVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLT--R 168
Query: 513 AEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPESGQFYLVEKS 572
EAE L + DG FL+R + G Y+LS + V H I G++ + E +
Sbjct: 169 EEAERKLYSGAQT-DGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKA-GKYCIPEGT 225
Query: 573 YFDSLYSLISHYRTNHLRSQEFLITLQEPVP 603
FD+L+ L+ + + + + L+E P
Sbjct: 226 KFDTLWQLVEYLKLK---ADGLIYCLKEACP 253
Score = 97.3 bits (242), Expect = 1e-22
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVP-SDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV- 714
+++ + +R++AE+ L+ +DG FL+R YV+S + + H I
Sbjct: 3 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQ 62
Query: 715 -EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQR 758
G G EL +Y R P L P +
Sbjct: 63 LNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLE 107
Score = 50.7 bits (121), Expect = 5e-07
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 431 LAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 480
+ + H I G+ T+F++L +L+ Y + L
Sbjct: 201 IYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLIYCLKEAC 252
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 167 bits (425), Expect = 7e-44
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 12/262 (4%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+F+G +S RAEAE+ L+ + + DG FL+R+ +G Y LS R +H I +
Sbjct: 8 LPFFYGSIS--RAEAEEHLK-LAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQ 64
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYHPTATR 620
G + + L Y + L++P +P+ E +
Sbjct: 65 LN-GTYAIAGGKAHCGPAELCEFYSRD---PDGLPCNLRKPCNRPSGLEPQPGVFDCLRD 120
Query: 621 SQAEDLLRRVPSDGAFLVRPSENDNSSYEP-VPQPNQHEDKEWYHPTATRSQAEDLLRRV 679
+ D +R+ + + + + HE WYH + TR +AE L
Sbjct: 121 AMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLYSG 180
Query: 680 PS-DGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYY 736
DG FL+RP + +Y +S + H I G+ T+F++L +L+ Y
Sbjct: 181 AQTDGKFLLRPRKEQG-TYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYL 239
Query: 737 ERHPLYKKIELWYPVSEDLIQR 758
+ L
Sbjct: 240 KLKADGLIYCLKEACPNSSASN 261
Score = 108 bits (271), Expect = 1e-24
Identities = 51/297 (17%), Positives = 90/297 (30%), Gaps = 49/297 (16%)
Query: 433 EDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGL 490
+ + H I G G EL +Y R P L P +
Sbjct: 53 DVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQP 112
Query: 491 G--------------------------------------VPNDELHFGEKWFHGRLSGGR 512
G + H W+H L+ R
Sbjct: 113 GVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLT--R 170
Query: 513 AEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPESGQFYLVEKS 572
EAE L + DG FL+R + G Y+LS + V H I + ++G++ + E +
Sbjct: 171 EEAERKLYSGAQT-DGKFLLRPRKE-QGTYALSLIYGKTVYHYLIS-QDKAGKYCIPEGT 227
Query: 573 YFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPS 632
FD+L+ L+ + + + + L+E P + PT + +
Sbjct: 228 KFDTLWQLVEYLKLK---ADGLIYCLKEACPNSSASNASGAAAPTLPAHPSTLTHPQRRI 284
Query: 633 DGAFLVRPSENDNSSYEPV-PQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVR 688
D + P P+P + + P + + +D + D +
Sbjct: 285 DTLNSDGYTPEPARITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNLLIAD 341
Score = 87.3 bits (216), Expect = 6e-18
Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 5/154 (3%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDKIKH 709
+P P H +++ + +R++AE+ L+ DG FL+R YV+S + + H
Sbjct: 1 MPDPAAHL--PFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHH 58
Query: 710 CRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNT 767
I G G EL +Y R P L P + D
Sbjct: 59 FPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCL 118
Query: 768 VSGTPGYMDPASFTPASITVKALYDYQARNDDEL 801
++ ++ QA ++L
Sbjct: 119 RDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKL 152
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 150 bits (381), Expect = 9e-43
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
Query: 644 DNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRA 703
SS +PVP PN HE K WY+ +R +AED+L R+P DGAFL+R E + SY I+FRA
Sbjct: 3 SGSSGDPVPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTD-SYAITFRA 61
Query: 704 EDKIKHCRIRVEGRLYTIGT-TQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMG 760
K+KHCRI +GR + +GT FESLVEL+SYYE+H LY+K+ L YPV+ +L++R
Sbjct: 62 RGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYRKMRLRYPVTPELLERYS 119
Score = 112 bits (283), Expect = 1e-29
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 14/125 (11%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR 551
VPN H + W++ RLS R EAED+L R DG FL+R+ E Y+++F +G+
Sbjct: 10 VPNPNPHESKPWYYDRLS--RGEAEDMLMRIPR--DGAFLIRKREG-TDSYAITFRARGK 64
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDK 611
V HCRI + F L +YF+SL L+S+Y + L + + L+ PV E
Sbjct: 65 VKHCRIN--RDGRHFVLGTSAYFESLVELVSYYEKHALYRK---MRLRYPVTP----ELL 115
Query: 612 EWYHP 616
E Y
Sbjct: 116 ERYSG 120
Score = 71.9 bits (177), Expect = 3e-15
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGT-TQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMG 489
A K+KHCRI +GR + +GT FESLVEL+SYYE+H LY+K+ L YPV+ +L++R
Sbjct: 60 RARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYRKMRLRYPVTPELLERYS 119
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 146 bits (369), Expect = 5e-41
Identities = 67/120 (55%), Positives = 80/120 (66%), Gaps = 6/120 (5%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLG---DGTFLVRESETFIGDYSLSFWW 548
P ELHFGEKWFH ++ R AE LL+ Y DGTFLVRESETF DY+LSFW
Sbjct: 13 TPPTELHFGEKWFHKKVES-RTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWR 71
Query: 549 QGRVNHCRIRSKPESG--QFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
GRV HCRIRS E+G ++YL + F+S+Y+LI HYR HLR EF + L +PVP PN
Sbjct: 72 SGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVPNPN 131
Score = 99.5 bits (248), Expect = 9e-25
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 644 DNSSYEP---VPQPNQHEDKEWYHPT-ATRSQAEDLLRRVPS-----DGAFLVRPSENDN 694
SS EP P H ++W+H +R+ AE LL+ + DG FLVR SE
Sbjct: 3 SGSSGEPVQDTPPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFP 62
Query: 695 SSYVISFRAEDKIKHCRIRV-----EGRLYTIGTTQFESLVELISYYERHPLYKK---IE 746
+ Y +SF +++HCRIR + Y F S+ LI +Y L +
Sbjct: 63 NDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELR 122
Query: 747 LWYPV 751
L PV
Sbjct: 123 LTDPV 127
Score = 45.6 bits (108), Expect = 7e-06
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 431 LAEDKIKHCRIRV-----EGRLYTIGTTQFESLVELISYYERHPLYKK---IELWYPV 480
+++HCRIR + Y F S+ LI +Y L + L PV
Sbjct: 70 WRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPV 127
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 141 bits (357), Expect = 1e-39
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 6 HPWFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD 61
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQPNQHEDKEWYH 615
Y + F+SL L+ ++R+ + R+Q+ + E VPQ + +H
Sbjct: 62 GA--GKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAHHHH 115
Score = 107 bits (269), Expect = 9e-28
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR 717
+ W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G
Sbjct: 4 KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 63
Query: 718 -LYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDD 765
Y + +F SL EL+ Y+ + + +++ E + Q+
Sbjct: 64 GKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAH 112
Score = 52.7 bits (127), Expect = 1e-08
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 431 LAEDKIKHCRIRVEGR-LYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMG 489
+ ++H ++ +G Y + +F SL EL+ Y+ + + +++ E
Sbjct: 48 KFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQ------ 101
Query: 490 LGVPNDELHFGEKWFHGR 507
VP + + H
Sbjct: 102 --VPQQPTY--VQAHHHH 115
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 140 bits (355), Expect = 2e-39
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 494 NDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN 553
+D+ G WFHG LS R +A L+ G FLVR+SET G+ L+F +QG+
Sbjct: 2 SDQPLSGYPWFHGMLS--RLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAK 59
Query: 554 HCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQ---EFLITLQEPVP 603
H R+ V+ +F S++ ++ H+R + + + + L VP
Sbjct: 60 HLRLSLNAA--GQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110
Score = 108 bits (272), Expect = 3e-28
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 656 QHEDKEWYHPTATRSQAEDLLRRVPS--DGAFLVRPSENDNSSYVISFRAEDKIKHCRIR 713
W+H +R +A L+ + G FLVR SE V++F + K KH R+
Sbjct: 5 PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64
Query: 714 V-EGRLYTIGTTQFESLVELISYYERHPLY------KKIELWYPV 751
+ + F+S+ +++ ++ HP+ + L V
Sbjct: 65 LNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109
Score = 51.2 bits (123), Expect = 4e-08
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 431 LAEDKIKHCRIRV-EGRLYTIGTTQFESLVELISYYERHPLY------KKIELWYPV 480
+ K KH R+ + + F+S+ +++ ++ HP+ + L V
Sbjct: 53 NFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 138 bits (350), Expect = 1e-38
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 646 SSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAED 705
SS + + HE K W+H ++ +A +LL V +FLVRPS+N Y + FR +
Sbjct: 2 SSGSSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNE 61
Query: 706 KIKHCRI-RVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
I+ +I + +G + S+ ++I +Y + + + L PV
Sbjct: 62 NIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVP 109
Score = 116 bits (293), Expect = 6e-31
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 489 GLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWW 548
G ++ H G+ WFHG++S + EA +LL +FLVR S+ GDYSL F
Sbjct: 4 GSSGREEDPHEGKIWFHGKIS--KQEAYNLLMTVGQ--VCSFLVRPSDNTPGDYSLYFRT 59
Query: 549 QGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
+ +I + QF + + Y++S+ +I HYR + L+EPVP +Q
Sbjct: 60 NENIQRFKIC-PTPNNQFMMGGR-YYNSIGDIIDHYRKEQIVEG---YYLKEPVPMQDQ 113
Score = 63.5 bits (155), Expect = 3e-12
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 431 LAEDKIKHCRI-RVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
+ I+ +I + +G + S+ ++I +Y + + + L PV
Sbjct: 58 RTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVP 109
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 144 bits (364), Expect = 2e-38
Identities = 65/359 (18%), Positives = 111/359 (30%), Gaps = 65/359 (18%)
Query: 494 NDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN 553
+ W+ G +S R EA+ L+ G FLVR+S T GDY LS RV+
Sbjct: 5 RFDSSDRSAWYMGPVS--RQEAQTRLQGQR---HGMFLVRDSSTCPGDYVLSVSENSRVS 59
Query: 554 HCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEW 613
H I S P + + + FD L +L+ Y+ ++L + + P
Sbjct: 60 HYIINSLP--NRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 614 YHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAE 673
+ N + Y ++ +
Sbjct: 118 LPT-----------------------------------AEDNLEYVRTLYDFPGNDAE-D 141
Query: 674 DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESLVELI 733
++ VI + E++ R + +GR+ I E LV
Sbjct: 142 LPFKK---------------GEILVIIEKPEEQWWSARNK-DGRVGMIPVPYVEKLVR-S 184
Query: 734 SYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPGYMDPASFTPASI----TVKA 789
S + +H P + VSG+PG + +
Sbjct: 185 SPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQ 244
Query: 790 LYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHNRED 848
A + L+ I+ G W G+ G++ FP +V +PQ+ E+
Sbjct: 245 KRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRK-GLFPFTHVKIFDPQNPDEN 302
Score = 138 bits (347), Expect = 3e-36
Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 13/198 (6%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI-R 713
+ + WY +R +A+ L+ G FLVR S YV+S ++ H I
Sbjct: 7 DSSDRSAWYMGPVSRQEAQTRLQG-QRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINS 65
Query: 714 VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTPG 773
+ R + IG +F+ L L+ +Y+ H L + +
Sbjct: 66 LPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMG-----------SVS 114
Query: 774 YMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFP 833
+ + V+ LYD+ + ++L F K I+ + + E WW R+ P
Sbjct: 115 APNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIP 174
Query: 834 SNYVAEIEPQHNREDSSR 851
YV ++
Sbjct: 175 VPYVEKLVRSSPHGKHGN 192
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 35/116 (30%)
Query: 432 AEDKIKHCRI-RVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGL 490
++ H I + R + IG +F+ L L+ +Y+ H L + +
Sbjct: 54 ENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSV 113
Query: 491 GVPN----------------------DELHF------------GEKWFHGRLSGGR 512
PN ++L F E+W+ R GR
Sbjct: 114 SAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGR 169
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 140 bits (353), Expect = 9e-38
Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 6/203 (2%)
Query: 651 VPQP-NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKH 709
+ + E WY +R +A LL+ G FLVR S YV+S ++ H
Sbjct: 3 MAGNFDSEERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSH 61
Query: 710 CRIRVEGRLYTIGTT--QFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNT 767
I G + + Q V + + + I +
Sbjct: 62 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPA--LLEFYKIHYLDTTTLIEP 119
Query: 768 VSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK 827
VS + + V+AL+D+ ++++L F K I+ + E WW +
Sbjct: 120 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEG 179
Query: 828 RMHWFPSNYVAEIEPQHNREDSS 850
+ P YV + P +
Sbjct: 180 KRGMIPVPYVEKYRPASASVSAL 202
Score = 81.5 bits (200), Expect = 2e-17
Identities = 39/163 (23%), Positives = 53/163 (32%), Gaps = 23/163 (14%)
Query: 489 GLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWW 548
G N + W+ GRLS R EA LL+ G FLVR+S T GDY LS
Sbjct: 1 GAMAGNFDSEERSSWYWGRLS--RQEAVALLQGQR---HGVFLVRDSSTSPGDYVLSVSE 55
Query: 549 QGRVNHCRIRSKPESGQF---------------YLVEKSYFDSLYSLISHYRTNHLRSQE 593
RV+H I S + FDSL +L+ Y+ ++L +
Sbjct: 56 NSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTT 115
Query: 594 FLITLQEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAF 636
++ D D F
Sbjct: 116 L---IEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPF 155
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 138 bits (349), Expect = 2e-37
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 27/203 (13%)
Query: 641 SENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVIS 700
+E + + + W+ R++AE++L + DGAFL+R SE+ + +S
Sbjct: 39 AELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLS 98
Query: 701 FRAEDKIKHCRIRVEGR-LYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRM 759
+ + ++H ++ +G Y + +F SL EL+ Y+ + + +++
Sbjct: 99 VKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR--------- 149
Query: 760 GLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGW 819
D V+AL+D+ + D EL F + I + ++ W
Sbjct: 150 ----------------DIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNW 193
Query: 820 WRGDYGGKRMHWFPSNYVAEIEP 842
W+G G+ FP NYV +
Sbjct: 194 WKGACHGQT-GMFPRNYVTPVNR 215
Score = 77.8 bits (191), Expect = 3e-16
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 9/158 (5%)
Query: 487 RMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF 546
+ G N WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS
Sbjct: 44 KDGFIPKNYIEMKPHPWFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSV 99
Query: 547 WWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
+ V H ++ Y + F+SL L+ ++R+ + + + +
Sbjct: 100 KFGNDVQHFKVLRDGAG--KYFLWVVKFNSLNELVDYHRSTSVSRNQ---QIFLRDIEQV 154
Query: 607 QHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSEND 644
+ Q + L D ++ S+ +
Sbjct: 155 PQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN 192
Score = 65.5 bits (159), Expect = 4e-12
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSNYVAEIEPQ 843
+ A YD++A DDELSF + I+ + + W++ + GK + P NY+
Sbjct: 1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKD-GFIPKNYIEMKPHP 59
Query: 844 HNREDSSR 851
R
Sbjct: 60 WFFGKIPR 67
Score = 42.7 bits (100), Expect = 2e-04
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 25/123 (20%)
Query: 432 AEDKIKHCRIRVEGR-LYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGL 490
+ ++H ++ +G Y + +F SL EL+ Y+ + + +++ E + Q+
Sbjct: 101 FGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTY 160
Query: 491 GVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG 550
F + E +L R GD ++ S+ WW+G
Sbjct: 161 VQA-------LFDFDPQ------EDGELGFR---RGDFIHVMDNSD--------PNWWKG 196
Query: 551 RVN 553
+
Sbjct: 197 ACH 199
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 131 bits (331), Expect = 4e-36
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 492 VPNDELHF-GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG 550
+ E+ + WF G + R + ++LL+ GT+L+RE +++S +
Sbjct: 6 SGSREIDYTAYPWFAGNME--RQQTDNLLKS---HASGTYLIRERPAEAERFAISIKFND 60
Query: 551 RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLR--SQEFLITLQEPVPQPNQ 607
V H ++ K ++ E FDSL L+ +Y+ + L+ ++ TL+ P P+
Sbjct: 61 EVKHIKVVEKD--NWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSS 117
Score = 120 bits (303), Expect = 2e-32
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 646 SSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAED 705
SS + + W+ R Q ++LL+ G +L+R + + IS + D
Sbjct: 2 SSGSSGSREIDYTAYPWFAGNMERQQTDNLLKSHA-SGTYLIRERPAEAERFAISIKFND 60
Query: 706 KIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKK-----IELWYPVSE 753
++KH ++ + I +F+SL+EL+ YY+ H L + L YP S
Sbjct: 61 EVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
Score = 58.0 bits (141), Expect = 2e-10
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 432 AEDKIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKK-----IELWYPVSE 482
D++KH ++ + I +F+SL+EL+ YY+ H L + L YP S
Sbjct: 58 FNDEVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 137 bits (344), Expect = 9e-36
Identities = 70/361 (19%), Positives = 110/361 (30%), Gaps = 64/361 (17%)
Query: 494 NDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN 553
N + W+ GRLS R EA LL+ G FLVR+S T GDY LS RV+
Sbjct: 4 NFDSEERSSWYWGRLS--RQEAVALLQGQR---HGVFLVRDSSTSPGDYVLSVSENSRVS 58
Query: 554 HCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEW 613
H I S + + S R + QEF + +P + +
Sbjct: 59 HYIINSSG--PRPPVPPSPAQPPPGVSPSRLR---IGDQEF-----DSLPALLEFYKIHY 108
Query: 614 YHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAE 673
+ EPV + Q A +A
Sbjct: 109 LDT----------------------------TTLIEPVSRSRQGSGVILRQEEAEYVRA- 139
Query: 674 DLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESLVELI 733
N N + F+ D I R + E + + ++ + + +
Sbjct: 140 --------------LFDFNGNDEEDLPFKKGD-ILRIRDKPEEQWWNAEDSEGKRGMIPV 184
Query: 734 SYYER-HPLYKKIELWYPVSEDL---IQRMGLEPDDNTVSGTPGYMDPASFTPASITVKA 789
Y E+ P + +++ G EP + P V
Sbjct: 185 PYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQ 244
Query: 790 LYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHNREDS 849
A + L+ ++ G W G+ GKR FP +V ++ Q+ ED
Sbjct: 245 KRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKR-GHFPFTHVRLLDQQNPEEDF 303
Query: 850 S 850
S
Sbjct: 304 S 304
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 130 bits (329), Expect = 1e-35
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 481 SEDLIQRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIG 540
+ Q G P D W+ G + RA AE +L DGTFLVR+
Sbjct: 8 KAEAEQNWWEGPPQD--LSVHLWYAGPME--RAGAESILAN---RSDGTFLVRQRVKDAA 60
Query: 541 DYSLSFWWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLR--SQEFLITL 598
++++S + V H +I + G + + EK F L L+ Y+ N L+ + TL
Sbjct: 61 EFAISIKYNVEVKHIKIMTA--EGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTL 118
Query: 599 QEPVPQPNQHE 609
Q P +P +
Sbjct: 119 QFPFKEPEKRT 129
Score = 117 bits (294), Expect = 8e-31
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHC 710
P WY R+ AE +L DG FLVR D + + IS + ++KH
Sbjct: 17 EGPPQDLSVHLWYAGPMERAGAESILANRS-DGTFLVRQRVKDAAEFAISIKYNVEVKHI 75
Query: 711 RIRVEGRLYTIGT-TQFESLVELISYYERHPLYKK-----IELWYPVSED 754
+I LY I F L EL+ +Y+++ L L +P E
Sbjct: 76 KIMTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEP 125
Score = 55.1 bits (133), Expect = 4e-09
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGT-TQFESLVELISYYERHPLYKK-----IELWYPVSED 483
++KH +I LY I F L EL+ +Y+++ L L +P E
Sbjct: 67 KYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEP 125
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 129 bits (326), Expect = 2e-35
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 494 NDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN 553
+ +H + WFHGR+S R E++ L+ + L DG FLVRES+ + LS +V
Sbjct: 7 SAAIHRTQLWFHGRIS--REESQRLIGQQ-GLVDGLFLVRESQRNPQGFVLSLCHLQKVK 63
Query: 554 HCRIRSKPESGQFYLV---EKSYFDSLYSLISHYRTNHLRSQEFLIT-LQEPVPQP 605
H I E G+ Y ++ F L L+ ++ N + L L+ +
Sbjct: 64 HYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLN----RGILPCLLRHCCTRV 115
Score = 102 bits (257), Expect = 4e-26
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV- 714
H + W+H +R +++ L+ + DG FLVR S+ + +V+S K+KH I
Sbjct: 11 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPS 70
Query: 715 --EGRLY---TIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
EGRLY G T+F L++L+ +++ + L + +
Sbjct: 71 EEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCT 113
Score = 45.8 bits (109), Expect = 3e-06
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 433 EDKIKHCRIRV---EGRLY---TIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
K+KH I EGRLY G T+F L++L+ +++ + L + +
Sbjct: 59 LQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCT 113
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 127 bits (321), Expect = 9e-35
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 10/117 (8%)
Query: 491 GVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG 550
G P + L W+HG +S R+ AE LL L +G+FLVRESE+ G S+S ++G
Sbjct: 7 GTPVNSLE-KHSWYHGPVS--RSAAEYLLSS---LINGSFLVRESESSPGQLSISLRYEG 60
Query: 551 RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
RV H RI + + G+ Y+ +S F +L L+ H+ T + + TL P P+ N+
Sbjct: 61 RVYHYRINTTAD-GKVYVTAESRFSTLAELVHHHSTV---ADGLVTTLHYPAPKCNK 113
Score = 114 bits (287), Expect = 3e-30
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 646 SSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAED 705
SS N E WYH +RS AE LL +G+FLVR SE+ IS R E
Sbjct: 2 SSGSSGTPVNSLEKHSWYHGPVSRSAAEYLLSS-LINGSFLVRESESSPGQLSISLRYEG 60
Query: 706 KIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
++ H RI +G++Y ++F +L EL+ ++ L YP
Sbjct: 61 RVYHYRINTTADGKVYVTAESRFSTLAELVHHHSTVADGLVTTLHYPAP 109
Score = 53.0 bits (128), Expect = 1e-08
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 432 AEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
E ++ H RI +G++Y ++F +L EL+ ++ L YP
Sbjct: 58 YEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHHSTVADGLVTTLHYPAP 109
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 127 bits (321), Expect = 1e-34
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 489 GLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWW 548
G D E WF G + RA+AE L S G FL+RESE+ GD+SLS
Sbjct: 4 GSSGAEDRSLQAEPWFFGAIK--RADAEKQLLY-SENQTGAFLIRESESQKGDFSLSVLD 60
Query: 549 QGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
+G V H RIR E G F+L + F +L +++Y T S + L++P +
Sbjct: 61 EGVVKHYRIRRLDE-GGFFLTRRKVFSTLNEFVNYYTTT---SDGLCVKLEKPCLKIQ 114
Score = 114 bits (288), Expect = 3e-30
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 646 SSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAE 704
SS + + + W+ R+ AE L + GAFL+R SE+ + +S E
Sbjct: 2 SSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDE 61
Query: 705 DKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 751
+KH RIR EG + F +L E ++YY ++L P
Sbjct: 62 GVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPC 110
Score = 50.4 bits (121), Expect = 1e-07
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 431 LAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 480
L E +KH RIR EG + F +L E ++YY ++L P
Sbjct: 59 LDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPC 110
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 126 bits (318), Expect = 2e-34
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLY 719
EWY+ TR QAE L +G FL+R SE+ S + +S +A K KH ++++ +Y
Sbjct: 5 SEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVY 64
Query: 720 TIGTTQFESLVELISYYERHPLYKK-----IELWYPV 751
IG +F ++ EL+ +Y++ P++ + L +
Sbjct: 65 CIGQRRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101
Score = 111 bits (280), Expect = 2e-29
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRS 559
G +W++G ++ R +AE L +G FL+R+SE+ D+S+S G+ H +++
Sbjct: 4 GSEWYYGNVT--RHQAECALNERGV--EGDFLIRDSESSPSDFSVSLKASGKNKHFKVQL 59
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEF--LITLQEPV 602
Y + + F ++ L+ HY+ + + E + L +
Sbjct: 60 V---DNVYCIGQRRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101
Score = 63.4 bits (155), Expect = 2e-12
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKK-----IELWYPV 480
A K KH ++++ +Y IG +F ++ EL+ +Y++ P++ + L +
Sbjct: 47 KASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 125 bits (315), Expect = 5e-34
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
+ + W+HP T +AE+LL DG+FL RPS+++ + +S R + H +I+
Sbjct: 2 SHMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQN 61
Query: 715 EGRLYTI-GTTQFESLVELISYYERHPLYKK------IELWYPVS 752
G Y + G +F +L EL+ YY H K IEL YP++
Sbjct: 62 TGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN 106
Score = 121 bits (305), Expect = 1e-32
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+WFH ++ EAE+LL DG+FL R S++ GD++LS G V H +I+
Sbjct: 7 RRWFHPNIT--GVEAENLLLTRGV--DGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQ-- 60
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFL---ITLQEPVPQPN 606
+ L F +L L+ +Y +H + +E I L+ P+ +
Sbjct: 61 NTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCAD 109
Score = 57.7 bits (140), Expect = 2e-10
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 431 LAEDKIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKK------IELWYPVS 481
+ H +I+ G Y + G +F +L EL+ YY H K IEL YP++
Sbjct: 49 RRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN 106
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 122 bits (309), Expect = 5e-33
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+HG++S R E LL DG++L+R+SE+ G Y L + G + R+
Sbjct: 4 VAVYHGKIS--RETGEKLLLATGL--DGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQT 59
Query: 561 PESGQFYL-----VEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYH 615
G + V K YF + +LIS ++ Q +I LQ PV + + +
Sbjct: 60 ET-GSWSAETAPGVHKRYFRKIKNLISAFQKP---DQGIVIPLQYPVEKKSSARSTQGTT 115
Query: 616 PT 617
Sbjct: 116 GI 117
Score = 100 bits (251), Expect = 3e-25
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--E 715
+ YH +R E LL DG++L+R SE+ Y + I R+
Sbjct: 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61
Query: 716 GRLY-----TIGTTQFESLVELISYYERHPLYKKIELWYPVSED 754
G + F + LIS +++ I L YPV +
Sbjct: 62 GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKK 105
Score = 44.7 bits (106), Expect = 1e-05
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 431 LAEDKIKHCRIRV--EGRLY-----TIGTTQFESLVELISYYERHPLYKKIELWYPVSED 483
L I R+ G + F + LIS +++ I L YPV +
Sbjct: 46 LYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKK 105
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 121 bits (306), Expect = 6e-33
Identities = 40/107 (37%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRS 559
GE WFHG+LS R EAE LL+ +G FLVRES T G Y L+ G+ H +
Sbjct: 6 GEPWFHGKLS--RREAEALLQL-----NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD 58
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHL--RSQEFLITLQEPVPQ 604
+ F+S+ LIS++ NHL S + LQ+PV +
Sbjct: 59 P---EGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102
Score = 104 bits (261), Expect = 8e-27
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR 717
+ W+H +R +AE LL+ +G FLVR S YV++ + KH +
Sbjct: 5 RGEPWFHGKLSRREAEALLQL---NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEG 61
Query: 718 LYTIGTTQFESLVELISYYERHPLY-----KKIELWYPVSEDL 755
+ +FES+ LISY+ + L ++ L PV L
Sbjct: 62 VVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104
Score = 51.5 bits (124), Expect = 3e-08
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLY-----KKIELWYPVSEDL 484
L + KH + + +FES+ LISY+ + L ++ L PV L
Sbjct: 46 LQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 121 bits (305), Expect = 1e-32
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 497 LHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR 556
+H + WFHGR+S R E+ ++++ DG FL+R+S++ + L+ ++ + +
Sbjct: 1 IHRTQHWFHGRIS--REESHRIIKQQGL-VDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQ 57
Query: 557 IRSKPESGQFYLV---EKSYFDSLYSLISHYRTNHLRSQEFLIT-LQEPVPQ 604
I + GQ + + F L L+ Y+ N L L+ +
Sbjct: 58 ILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGV----LPCKLKHHCIR 105
Score = 102 bits (257), Expect = 3e-26
Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 657 HEDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVE 715
H + W+H +R ++ ++++ DG FL+R S+++ ++V++ KIK+ +I
Sbjct: 2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 716 G----RLYTI--GTTQFESLVELISYYERHPLYKKIELWYPV 751
+++ G T+F L++L+ +Y+ + +L +
Sbjct: 62 EDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPCKLKHHC 103
Score = 45.3 bits (108), Expect = 4e-06
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 433 EDKIKHCRIRVEG----RLYTI--GTTQFESLVELISYYERHPLYKKIELWYPV 480
KIK+ +I +++ G T+F L++L+ +Y+ + +L +
Sbjct: 50 HQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPCKLKHHC 103
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 120 bits (304), Expect = 2e-32
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 493 PNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFI-GDYSLSFWWQGR 551
N L +W+ G +S R E + LR DGTFLVR++ T + GDY+L+ G
Sbjct: 4 NNMSLQ-NAEWYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKGGN 57
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHL--RSQEFLITLQEPVPQPNQ-- 607
+I + G++ + F S+ LI+HYR L + + + L PV + Q
Sbjct: 58 NKLIKIFHR--DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQ 115
Query: 608 --HED 610
ED
Sbjct: 116 VVKED 120
Score = 106 bits (267), Expect = 2e-27
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSE-NDNSSYVISFRAEDKIKH 709
+ ++ EWY +R + + LR DG FLVR + + Y ++ R K
Sbjct: 2 MNNNMSLQNAEWYWGDISREEVNEKLRDTA-DGTFLVRDASTKMHGDYTLTLRKGGNNKL 60
Query: 710 CRIR-VEGRLYTIGTTQFESLVELISYYERHPLYK-----KIELWYPVS 752
+I +G+ F S+VELI++Y L + ++L YPVS
Sbjct: 61 IKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVS 109
Score = 51.9 bits (125), Expect = 2e-08
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 433 EDKIKHCRIR-VEGRLYTIGTTQFESLVELISYYERHPLYK-----KIELWYPVS 481
K +I +G+ F S+VELI++Y L + ++L YPVS
Sbjct: 55 GGNNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVS 109
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 120 bits (303), Expect = 2e-32
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 498 HFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRI 557
+WFHG +S R +AE+LL G+FL+R S + +G Y+LS+ Q H +
Sbjct: 13 DGVPEWFHGAIS--REDAENLLESQ---PLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMV 66
Query: 558 RSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
+ + EK SL +L++ ++ + + L +P Q +
Sbjct: 67 KLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRR--ELLTQPCRQKDS 114
Score = 105 bits (263), Expect = 6e-27
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 653 QPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI 712
Q Q EW+H +R AE+LL P G+FL+R S + + Y +S++A+ H +
Sbjct: 9 QLAQDGVPEWFHGAISREDAENLLESQP-LGSFLIRVSHS-HVGYTLSYKAQSSCCHFMV 66
Query: 713 RV--EGRLYTIG-TTQFESLVELISYYERHPLYKKIE-LWYPV 751
++ +G G SL L++++++ P+ + E L P
Sbjct: 67 KLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPC 109
Score = 47.7 bits (114), Expect = 7e-07
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 431 LAEDKIKHCRIRV--EGRLYTIG-TTQFESLVELISYYERHPLYKKIE-LWYPV 480
A+ H +++ +G G SL L++++++ P+ + E L P
Sbjct: 56 KAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPC 109
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 119 bits (300), Expect = 5e-32
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 498 HFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRI 557
WFHG+++ R +AE LL G FLVRES + GDY+L G+V H RI
Sbjct: 5 LSLMPWFHGKIT--REQAERLLYPP---ETGLFLVRESTNYPGDYTLCVSSDGKVEHYRI 59
Query: 558 RSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLIT-LQEPVPQPN 606
+ + + E+ YF++L L+ HY ++ L T L +P
Sbjct: 60 M--YHASKLSIDEEVYFENLMQLVEHYTSDADG----LCTRLIKPKVMEG 103
Score = 111 bits (279), Expect = 3e-29
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
+ W+H TR QAE LL P G FLVR S N Y + ++ K++H RI
Sbjct: 3 TKLSLMPWFHGKITREQAERLLYP-PETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMY 61
Query: 715 EGRLYTIGT-TQFESLVELISYYERHPLYKKIELWYPV 751
+I FE+L++L+ +Y L P
Sbjct: 62 HASKLSIDEEVYFENLMQLVEHYTSDADGLCTRLIKPK 99
Score = 53.4 bits (129), Expect = 6e-09
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGT-TQFESLVELISYYERHPLYKKIELWYPV 480
++ K++H RI +I FE+L++L+ +Y L P
Sbjct: 49 SSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTSDADGLCTRLIKPK 99
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 120 bits (302), Expect = 5e-32
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 646 SSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR--- 702
SS + E EWYH TR+QAE LLR+ +GAF+VR S + SY IS
Sbjct: 2 SSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLG-SYTISVFMGA 60
Query: 703 ---AEDKIKHCRIR--VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
E IKH +I+ G+ Y F+S+ ELI Y++ + L YPV
Sbjct: 61 RRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMTRLRYPVG 115
Score = 105 bits (265), Expect = 4e-27
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 498 HFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW------WQGR 551
+W+H ++ R +AE LLR+ S +G F+VR+S +G Y++S + +
Sbjct: 13 LEIYEWYHRNIT--RNQAEHLLRQESK--EGAFIVRDSRH-LGSYTISVFMGARRSTEAA 67
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
+ H +I+ GQ+Y+ E+ F S+ LI +++ N + + L+ PV
Sbjct: 68 IKHYQIKKNDS-GQWYVAERHAFQSIPELIWYHQHN---AAGLMTRLRYPVGLMG 118
Score = 59.6 bits (145), Expect = 6e-11
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 427 DEGKLAEDKIKHCRIR--VEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
+ E IKH +I+ G+ Y F+S+ ELI Y++ + L YPV
Sbjct: 59 GARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMTRLRYPVG 115
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 118 bits (299), Expect = 5e-32
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
E WF G +S R+EA L+ + G FL+R SE DY LS V H +I +
Sbjct: 2 EPWFFGCIS--RSEAVRRLQAEGN-ATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRR 58
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLIT-LQEPVPQP 605
G+ +L E F SL L++++R L L P +
Sbjct: 59 AG-GRLHLNEAVSFLSLPELVNYHRAQSLS----HGLRLAAPCRKH 99
Score = 109 bits (275), Expect = 8e-29
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 661 EWYHPTATRSQAEDLLR-RVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--EGR 717
W+ +RS+A L+ + GAFL+R SE ++ YV+S R ++H +I GR
Sbjct: 3 PWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGR 62
Query: 718 LYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
L+ F SL EL++Y+ L + L P
Sbjct: 63 LHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCR 97
Score = 55.3 bits (134), Expect = 1e-09
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 431 LAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
++H +I GRL+ F SL EL++Y+ L + L P
Sbjct: 45 RDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCR 97
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 119 bits (300), Expect = 6e-32
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 487 RMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF 546
G+ + W+ G +S R EA+ L+ G FLVR+S T GDY LS
Sbjct: 5 SSGMSSARFDSSDRSAWYMGPVS--RQEAQTRLQ---GQRHGMFLVRDSSTCPGDYVLSV 59
Query: 547 WWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
RV+H I S P + + + FD L +L+ Y+ ++L TL EP P+
Sbjct: 60 SENSRVSHYIINSLPN--RRFKIGDQEFDHLPALLEFYKIHYLD----TTTLIEPAPR 111
Score = 106 bits (267), Expect = 2e-27
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI-R 713
+ + WY +R +A+ L+ G FLVR S YV+S ++ H I
Sbjct: 14 DSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHYIINS 72
Query: 714 VEGRLYTIGTTQFESLVELISYYERHPL 741
+ R + IG +F+ L L+ +Y+ H L
Sbjct: 73 LPNRRFKIGDQEFDHLPALLEFYKIHYL 100
Score = 49.6 bits (119), Expect = 1e-07
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 433 EDKIKHCRI-RVEGRLYTIGTTQFESLVELISYYERHPL 470
++ H I + R + IG +F+ L L+ +Y+ H L
Sbjct: 62 NSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYL 100
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 118 bits (299), Expect = 7e-32
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
W+HG +S R AE LL +G+FLVRESE+ G S+S ++GRV H RI +
Sbjct: 5 HSWYHGPVS--RNAAEYLLSS---GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTA 59
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
+ G+ Y+ +S F++L L+ H+ T + + TL P P+ N+
Sbjct: 60 SD-GKLYVSSESRFNTLAELVHHHSTV---ADGLITTLHYPAPKRNK 102
Score = 101 bits (254), Expect = 1e-25
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--E 715
E WYH +R+ AE LL +G+FLVR SE+ IS R E ++ H RI +
Sbjct: 3 EKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 716 GRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS-EDLIQRMGLEPD 764
G+LY ++F +L EL+ ++ L YP + G+ P+
Sbjct: 62 GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPN 111
Score = 47.2 bits (113), Expect = 1e-06
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 431 LAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 480
E ++ H RI +G+LY ++F +L EL+ ++ L YP
Sbjct: 46 RYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPA 97
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 119 bits (300), Expect = 9e-32
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 493 PNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRV 552
+ +H + WFH ++S R EA+ L+ + DG FLVR+S++ + LS ++
Sbjct: 18 GSHMIHRSQPWFHHKIS--RDEAQRLIIQQGL-VDGVFLVRDSQSNPKTFVLSMSHGQKI 74
Query: 553 NHCRIRSKPESGQFYLV---EKSYFDSLYSLISHYRTNHLRSQEFLIT-LQEPVPQ 604
H +I + G+ + + F L L+ Y+ N L L+ +
Sbjct: 75 KHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGV----LPCKLKHYCAR 126
Score = 109 bits (274), Expect = 2e-28
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 639 RPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSY 697
+ +S P H + W+H +R +A+ L+ + DG FLVR S+++ ++
Sbjct: 5 HHHHHHSSGLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTF 64
Query: 698 VISFRAEDKIKHCRIRV---EGRLYTI---GTTQFESLVELISYYERHPLYKKIELWYPV 751
V+S KIKH +I +G ++ G T+F L++L+ +Y+ + +L +
Sbjct: 65 VLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPCKLKHYC 124
Query: 752 S 752
+
Sbjct: 125 A 125
Score = 47.0 bits (112), Expect = 2e-06
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 433 EDKIKHCRIRV---EGRLYTI---GTTQFESLVELISYYERHPLYKKIELWYPVS 481
KIKH +I +G ++ G T+F L++L+ +Y+ + +L + +
Sbjct: 71 GQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPCKLKHYCA 125
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 118 bits (298), Expect = 1e-31
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRS 559
+ W+HG + R EA++LL++ G FLVRES G+Y LS + G+ H I+
Sbjct: 16 EQDWYHGAIP--RIEAQELLKK-----QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQY 68
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHL-RSQEFLITLQEPVPQPNQ 607
Y E + F ++ LI H+ T +++ + L P+P+ +
Sbjct: 69 V---DNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKDKK 114
Score = 104 bits (261), Expect = 1e-26
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHC 710
+++WYH R +A++LL++ G FLVR S YV+S ++ + +H
Sbjct: 8 HSHMKPLAEQDWYHGAIPRIEAQELLKK---QGDFLVRESHGKPGEYVLSVYSDGQRRHF 64
Query: 711 RIRVEGRLYTIGTTQFESLVELISYYERHPL 741
I+ +Y T F ++ +LI ++
Sbjct: 65 IIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQ 95
Score = 48.5 bits (116), Expect = 5e-07
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPL 470
++ + +H I+ +Y T F ++ +LI ++
Sbjct: 56 YSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLIDHHYTTKQ 95
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 116 bits (292), Expect = 4e-31
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 660 KEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR-L 718
W+ R++AE++L + DGAFL+R SE+ + +S + + ++H ++ +G
Sbjct: 3 MAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGK 62
Query: 719 YTIGTTQFESLVELISYYERHPLYKKIELW 748
Y + +F SL EL+ Y+ + + +++
Sbjct: 63 YFLWVVKFNSLNELVDYHRSTSVSRNQQIF 92
Score = 111 bits (281), Expect = 1e-29
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
WF G++ RA+AE++L + H DG FL+RESE+ GD+SLS + V H ++
Sbjct: 3 MAWFFGKIP--RAKAEEMLSKQRH--DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD 58
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTN 587
Y + F+SL L+ ++R+
Sbjct: 59 GAG--KYFLWVVKFNSLNELVDYHRST 83
Score = 57.6 bits (140), Expect = 2e-10
Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 431 LAEDKIKHCRIRVEGR-LYTIGTTQFESLVELISYYERHPLYKKIELW 477
+ ++H ++ +G Y + +F SL EL+ Y+ + + +++
Sbjct: 45 KFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIF 92
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 123 bits (308), Expect = 6e-31
Identities = 33/198 (16%), Positives = 56/198 (28%), Gaps = 26/198 (13%)
Query: 655 NQHEDKEWYHPTATRSQAEDLL-RRVPSDGAFLVRPSENDNSSYVISFRAEDK---IKHC 710
+ E + +Y P +R +A LL S G FL+R S Y ++ R D+ + H
Sbjct: 36 DPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSR-PGEYSLTVREADEGNAVCHY 94
Query: 711 RIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDDNTVSG 770
I E K +P L+ +
Sbjct: 95 LIERG---------------EPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLL 139
Query: 771 TPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH 830
V + + + +L F + + +++ WW
Sbjct: 140 AAYKKPIIEV------VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTG 193
Query: 831 WFPSNYVAEIEPQHNRED 848
P+NYV HN
Sbjct: 194 LVPANYVQIQMEFHNDRT 211
Score = 52.9 bits (126), Expect = 2e-07
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 481 SEDLIQRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIG 540
+ + + ++ +S R EA LL + GTFL+R+S G
Sbjct: 21 MASMTGGQQMTTNGFDPFEWRSFYFPGMS--REEAHKLLGE-PQVSIGTFLMRDSSR-PG 76
Query: 541 DYSLSF--WWQGR-VNHCRIRSKPES------GQFYLVEKSYFDSLYSLISHYRTNHLRS 591
+YSL+ +G V H I + +S F + +L++H++ L
Sbjct: 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQS-FPDIPALLNHFKMRVLTE 135
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 115 bits (291), Expect = 8e-31
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRA------EDKIK 708
+ +D +W+ +RSQ+E LLR+ +GAF+VR S Y +S + + +K
Sbjct: 6 SGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVG-MYTVSLFSKAVNDKKGTVK 64
Query: 709 HCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
H + E +LY F+S+ +LI Y++ + L +PVS
Sbjct: 65 HYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITRLRHPVS 110
Score = 104 bits (262), Expect = 7e-27
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW------WQGRVNH 554
WF G +S R+++E LLR+ +G F+VR S +G Y++S + +G V H
Sbjct: 11 YDWFAGNIS--RSQSEQLLRQKGK--EGAFMVRNSSQ-VGMYTVSLFSKAVNDKKGTVKH 65
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV 602
+ + E + YL E FDS+ LI +++ N S + L+ PV
Sbjct: 66 YHVHTNAE-NKLYLAENYCFDSIPKLIHYHQHN---SAGMITRLRHPV 109
Score = 60.3 bits (147), Expect = 2e-11
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 427 DEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
+ +KH + E +LY F+S+ +LI Y++ + L +PVS
Sbjct: 54 KAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITRLRHPVS 110
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 116 bits (292), Expect = 1e-30
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 648 YEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNS--SYVISFRAED 705
Q + K WY R AE+ L R DG+FL+R S +S Y +
Sbjct: 11 STFADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNK 70
Query: 706 KIKHCRIRV--EGRLYTIGTTQ-----FESLVELISYYERHPLY---------KKIELWY 749
++ + +R + Y +G + F S+VE+++ ++ +PL L Y
Sbjct: 71 RVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKY 130
Query: 750 PVS 752
V
Sbjct: 131 AVK 133
Score = 98.4 bits (245), Expect = 3e-24
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGD--YSLSFWWQ 549
+ G+ W+ G R AE+ L R + DG+FL+R+S Y+L ++
Sbjct: 14 ADQEAELLGKPWYAGACD--RKSAEEALHRSNK--DGSFLIRKSSGHDSKQPYTLVAFFN 69
Query: 550 GRVNHCRIRSKPESGQFYLVEKS----YFDSLYSLISHYRTNHL------RSQEFLITLQ 599
RV + +R + Q+ L +K YF S+ +++ ++ N L + + L+
Sbjct: 70 KRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLK 129
Query: 600 EPVPQPNQ 607
V +
Sbjct: 130 YAVKVSSG 137
Score = 48.3 bits (115), Expect = 9e-07
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 16/67 (23%)
Query: 431 LAEDKIKHCRIRV--EGRLYTIGTTQ-----FESLVELISYYERHPLY---------KKI 474
++ + +R + Y +G + F S+VE+++ ++ +PL
Sbjct: 67 FFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDST 126
Query: 475 ELWYPVS 481
L Y V
Sbjct: 127 RLKYAVK 133
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 113 bits (285), Expect = 4e-30
Identities = 39/117 (33%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
W+ GRLS R EA LL+ G FLVR+S T GDY LS RV+H I S
Sbjct: 2 WYWGRLS--RQEAVALLQGQR---HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 56
Query: 563 SGQF---------------YLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
+ FDSL +L+ Y+ ++L + TL EPV +
Sbjct: 57 RPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTT----TLIEPVSR 109
Score = 91.4 bits (227), Expect = 3e-22
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR---- 717
WY +R +A LL+ G FLVR S YV+S ++ H I G
Sbjct: 2 WYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60
Query: 718 --------------LYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
IG +F+SL L+ +Y+ H L L PVS
Sbjct: 61 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL-DTTTLIEPVS 108
Score = 39.8 bits (93), Expect = 3e-04
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 19/69 (27%)
Query: 431 LAEDKIKHCRIRVEGR------------------LYTIGTTQFESLVELISYYERHPLYK 472
++ H I G IG +F+SL L+ +Y+ H L
Sbjct: 41 SENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL-D 99
Query: 473 KIELWYPVS 481
L PVS
Sbjct: 100 TTTLIEPVS 108
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 113 bits (285), Expect = 5e-30
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV-EG 716
E EW+H +R QAE+LL G F++R S++ + IS R ED ++H ++
Sbjct: 7 EFPEWFHEGLSRHQAENLLMGKD-IGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTK 65
Query: 717 RLYTIGTTQFESLVELISYYERHPLYKKIEL 747
Y + T +F SL +L+ YY + K+ ++
Sbjct: 66 GNYFLWTEKFPSLNKLVDYYRTTSISKQKQV 96
Score = 107 bits (269), Expect = 5e-28
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 500 GEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRS 559
+WFH LS R +AE+LL G F++R S++ GD+S+S + V H ++
Sbjct: 8 FPEWFHEGLS--RHQAENLLM---GKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMR 62
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHL--RSQEFL 595
+ Y + F SL L+ +YRT + + Q FL
Sbjct: 63 DTKG--NYFLWTEKFPSLNKLVDYYRTTSISKQKQVFL 98
Score = 56.1 bits (136), Expect = 7e-10
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 431 LAEDKIKHCRIRV-EGRLYTIGTTQFESLVELISYYERHPLYKKIEL 476
ED ++H ++ Y + T +F SL +L+ YY + K+ ++
Sbjct: 50 RHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQV 96
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 121 bits (304), Expect = 7e-30
Identities = 60/323 (18%), Positives = 109/323 (33%), Gaps = 24/323 (7%)
Query: 432 AEDKIKHCRIR-VEGRLYTIGTTQFESLVELISYYERHPLYK-----KIELWYPVSEDLI 485
K +I +G+ F S+VELI++Y L + ++L YPVS+
Sbjct: 53 KGGNNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQ 112
Query: 486 QRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLS 545
++ + + ++ + E + L Y+ + R + +
Sbjct: 113 DQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKI 172
Query: 546 FWWQGRVN--HCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVP 603
F Q + + + + + E Y + + + S+ L +
Sbjct: 173 FEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQA 232
Query: 604 QPNQHEDKEWYHPTATRSQAEDL------------LRRVPSDGAFLVRPSENDNSSYEPV 651
+ DK Q +R+ + +E+ S E
Sbjct: 233 AEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLGNENTEDQYSLVEDD 292
Query: 652 PQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCR 711
H++K W ++ R++AE+LLR DG FLVR S Y S + ++KHC
Sbjct: 293 EDLPHHDEKTWNVGSSNRNKAENLLRGKR-DGTFLVRESSKQG-CYACSVVVDGEVKHCV 350
Query: 712 IRVEGRLYTIGTT--QFESLVEL 732
I Y + SL EL
Sbjct: 351 INKTATGYGFAEPYNLYSSLKEL 373
Score = 111 bits (278), Expect = 2e-26
Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 10/180 (5%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESET-FIGDYSLSFWWQGRVNHCRIRS 559
+W+ G +S R E + LR DGTFLVR++ T GDY+L+ G +I
Sbjct: 10 AEWYWGDIS--REEVNEKLR---DTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFH 64
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHL--RSQEFLITLQEPVPQPNQHEDKEWYHPT 617
+ G++ + F S+ LI+HYR L + + + L PV + Q + + +
Sbjct: 65 R--DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKEDNIE 122
Query: 618 ATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLR 677
A + + + R E + + + + Q + R
Sbjct: 123 AVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQER 182
Score = 106 bits (265), Expect = 8e-25
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSE-NDNSSYVISFRAEDKIKHCRIR-VE 715
++ EWY +R + + LR DG FLVR + + Y ++ R K +I +
Sbjct: 8 QNAEWYWGDISREEVNEKLRDTA-DGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 66
Query: 716 GRLYTIGTTQFESLVELISYYERHPLYK-----KIELWYPVSEDLIQRMGLEPDDNTVSG 770
G+ F S+VELI++Y L + ++L YPVS+ ++ E + V G
Sbjct: 67 GKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKEDNIEAV-G 125
Query: 771 TPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAI 808
+ F S LY+ R E+ + AI
Sbjct: 126 KKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAI 163
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 112 bits (283), Expect = 8e-30
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF-----WWQGRVNHC 555
E+W+ G+L R +AE L + + GTFL+RESET G YSLS V H
Sbjct: 5 EEWYFGKLG--RKDAERQLLSFGN-PRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVP 603
+IR G +Y+ ++ F++L L+ HY + L P
Sbjct: 62 KIRKLDN-GGYYITTRAQFETLQQLVQHYSER---AAGLSSRLVVPSH 105
Score = 96.9 bits (242), Expect = 3e-24
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAED-----KIKHCR 711
+ +EWY R AE L + G FL+R SE +Y +S R D +KH +
Sbjct: 3 QAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYK 62
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
IR G Y QFE+L +L+ +Y L P
Sbjct: 63 IRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSSRLVVPSH 105
Score = 52.3 bits (126), Expect = 2e-08
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 426 KDEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
+D + D +KH +IR G Y QFE+L +L+ +Y L P
Sbjct: 48 RDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSSRLVVPSH 105
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 112 bits (283), Expect = 1e-29
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 655 NQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV 714
H++K W ++ R++AE+LLR DG FLVR S Y S + ++KHC I
Sbjct: 5 PHHDEKTWNVGSSNRNKAENLLRGKR-DGTFLVRESSKQG-CYACSVVVDGEVKHCVINK 62
Query: 715 --EGRLYTIGTTQFESLVELISYYERHPLYKK-----IELWYPVSE 753
G + + SL EL+ +Y+ L + + L YPV
Sbjct: 63 TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
Score = 110 bits (278), Expect = 5e-29
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+ W G + R +AE+LLR DGTFLVRES G Y+ S G V HC I K
Sbjct: 10 KTWNVGSSN--RNKAENLLRGKR---DGTFLVRESSK-QGCYACSVVVDGEVKHCVIN-K 62
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLR--SQEFLITLQEPVPQPNQ 607
+G + + + SL L+ HY+ L + +TL PV +
Sbjct: 63 TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQQR 111
Score = 55.0 bits (133), Expect = 2e-09
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 432 AEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKK-----IELWYPVSE 482
+ ++KHC I G + + SL EL+ +Y+ L + + L YPV
Sbjct: 51 VDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 111 bits (279), Expect = 3e-29
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
WFHG++S EA L+ DG FLVRES GDY L + V H R+
Sbjct: 5 MPWFHGKIS--GQEAVQQLQ---PPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVL-- 57
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVP 603
G + E +F +L ++ HY + L P
Sbjct: 58 HRDGHLTIDEAVFFCNLMDMVEHYSKD---KGAICTKLVRPKR 97
Score = 106 bits (268), Expect = 9e-28
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR 717
W+H + +A L+ P DG FLVR S YV+ + H R+
Sbjct: 3 SLMPWFHGKISGQEAVQQLQP-PEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 61
Query: 718 LYTIGT-TQFESLVELISYYERHPLYKKIELWYPVS 752
TI F +L++++ +Y + +L P
Sbjct: 62 HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKR 97
Score = 50.6 bits (122), Expect = 4e-08
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 433 EDKIKHCRIRVEGRLYTIGT-TQFESLVELISYYERHPLYKKIELWYPVS 481
+ H R+ TI F +L++++ +Y + +L P
Sbjct: 48 GRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKR 97
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 111 bits (280), Expect = 4e-29
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRI-RVEGRLYT 720
W H TRS+AE+LL R DG+FLVR SE+ + +Y + + + RI E +T
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 721 IGTTQ------FESLVELISYYERHPLYKKIELWYPV 751
+ ++ F L +LI +Y++ + L YPV
Sbjct: 72 VQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPV 108
Score = 108 bits (273), Expect = 3e-28
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Query: 494 NDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVN 553
+ W HG ++ R++AE+LL R DG+FLVR SE+ Y+L ++ V
Sbjct: 3 SGSSGMVPCWNHGNIT--RSKAEELLSRTGK--DGSFLVRASESISRAYALCVLYRNCVY 58
Query: 554 HCRIRSKPESGQFYL-----VEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQH 608
RI + +F + V +F L LI Y+ + + LQ PVP +
Sbjct: 59 TYRILPNED-DKFTVQASEGVSMRFFTKLDQLIEFYKKE---NMGLVTHLQYPVPLEEED 114
Query: 609 EDKE 612
+
Sbjct: 115 TGDD 118
Score = 53.1 bits (128), Expect = 1e-08
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 431 LAEDKIKHCRI-RVEGRLYTIGTTQ------FESLVELISYYERHPLYKKIELWYPV 480
L + + RI E +T+ ++ F L +LI +Y++ + L YPV
Sbjct: 52 LYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPV 108
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 110 bits (277), Expect = 5e-29
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+HG++S R E LL DG++L+R+SE+ G Y L + G + R+
Sbjct: 4 VAVYHGKIS--RETGEKLLLATGL--DGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQT 59
Query: 561 PESGQFYL-----VEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
G + V K YF + +LIS ++ Q +I LQ PV +
Sbjct: 60 ET-GSWSAETAPGVHKRYFRKIKNLISAFQKP---DQGIVIPLQYPVEK 104
Score = 100 bits (252), Expect = 1e-25
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--E 715
+ YH +R E LL DG++L+R SE+ Y + I R+
Sbjct: 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61
Query: 716 GRLY-----TIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
G + F + LIS +++ I L YPV
Sbjct: 62 GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVE 103
Score = 44.2 bits (105), Expect = 8e-06
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 431 LAEDKIKHCRIRV--EGRLY-----TIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
L I R+ G + F + LIS +++ I L YPV
Sbjct: 46 LYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVE 103
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 111 bits (279), Expect = 7e-29
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 641 SENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVIS 700
S + + + WY TR +AE L VP DG+FLVR S +D +S
Sbjct: 5 SSGPMDVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVP-DGSFLVRDSSDDRYLLSLS 63
Query: 701 FRAEDKIKHCRIRVEGRLYTIGTT----QFESLVELISYYERHPLYKK------------ 744
FR+ K H RI ++ S+V+LI +
Sbjct: 64 FRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSA 123
Query: 745 ---IELWYPVS 752
+ L PVS
Sbjct: 124 TYPVRLTNPVS 134
Score = 98.0 bits (244), Expect = 4e-24
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR 551
+ + W+ G ++ R EAE L DG+FLVR+S SLSF G+
Sbjct: 15 TEELKKLAKQGWYWGPIT--RWEAEGKLANVP---DGSFLVRDSSDDRYLLSLSFRSHGK 69
Query: 552 VNHCRIRSKPESGQFYLVEKSY---FDSLYSLISHYRTNHLRSQEFLITLQEPVPQP 605
H RI +G+F E+ S+ LI H + + P
Sbjct: 70 TLHTRIEH--SNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSAT 124
Score = 44.8 bits (106), Expect = 1e-05
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 19/69 (27%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTT----QFESLVELISYYERHPLYKK-------------- 473
+ K H RI ++ S+V+LI +
Sbjct: 66 SHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATY 125
Query: 474 -IELWYPVS 481
+ L PVS
Sbjct: 126 PVRLTNPVS 134
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 110 bits (277), Expect = 7e-29
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 654 PNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDK------I 707
PN E EWY+ + +R +AE LL +GAF+VR S +Y +S + I
Sbjct: 3 PNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPG-TYTVSVFTKAIISENPCI 61
Query: 708 KHCRIRV----EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSED 754
KH I+ R Y F+S+ LI Y++ + L YPV
Sbjct: 62 KHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPVCGS 112
Score = 101 bits (253), Expect = 1e-25
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 491 GVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG 550
G PN+ +W++ +S R +AE LL +G F+VR+S T G Y++S + +
Sbjct: 1 GSPNN--LETYEWYNKSIS--RDKAEKLLLDTGK--EGAFMVRDSRT-PGTYTVSVFTKA 53
Query: 551 R------VNHCRIRSKPES-GQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPV- 602
+ H I+ +S ++Y+ EK FDS+ LI +++ N + L+ PV
Sbjct: 54 IISENPCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYN---GGGLVTRLRYPVC 110
Query: 603 PQPNQHED 610
P H D
Sbjct: 111 GSPGIHRD 118
Score = 53.9 bits (130), Expect = 6e-09
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 434 DKIKHCRIRV----EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSED 483
IKH I+ R Y F+S+ LI Y++ + L YPV
Sbjct: 59 PCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPVCGS 112
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 109 bits (275), Expect = 2e-28
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAED----- 705
+ E EWY TRSQAE LL++ +G F+VR S Y +S A+
Sbjct: 2 TEAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAG-KYTVSVFAKSTGDPQ 60
Query: 706 -KIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
I+H + + + Y F ++ ELI+Y++ + L YPVS
Sbjct: 61 GVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLISRLKYPVS 110
Score = 102 bits (256), Expect = 7e-26
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 15/121 (12%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW------WQGRVNH 554
+W+ ++ R++AE LL++ +G F+VR+S G Y++S + QG + H
Sbjct: 11 YEWYSKHMT--RSQAEQLLKQEGK--EGGFIVRDSSK-AGKYTVSVFAKSTGDPQGVIRH 65
Query: 555 CRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWY 614
+ S P+ Q+YL EK F ++ LI++++ N S + L+ PV Q N++ +
Sbjct: 66 YVVCSTPQ-SQYYLAEKHLFSTIPELINYHQHN---SAGLISRLKYPVSQQNKNAPSTHH 121
Query: 615 H 615
H
Sbjct: 122 H 122
Score = 56.2 bits (136), Expect = 1e-09
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 427 DEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
+ I+H + + + Y F ++ ELI+Y++ + L YPVS
Sbjct: 54 KSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLISRLKYPVS 110
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 107 bits (270), Expect = 2e-28
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
VKAL+DY+A+ +DEL+F K AII NV + EGGWWRGDYGGK+ WFPSNYV E+
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
Query: 842 P 842
Sbjct: 64 N 64
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 111 bits (277), Expect = 3e-28
Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 42/197 (21%)
Query: 655 NQHEDKEWYHPTATRSQAEDLL-RRVPSDGAFLVRPSENDNSSYVISFRAEDK---IKHC 710
+ E + +Y P +R +A LL S G FL+R S Y ++ R D+ + H
Sbjct: 7 DPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSR-PGEYSLTVREADEGNAVCHY 65
Query: 711 RIRVEGRL--------YTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLE 762
I I F + L+++++ L
Sbjct: 66 LIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLT-------------------- 105
Query: 763 PDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG 822
+ A P V + + + +L F + + +++ WW
Sbjct: 106 ---------EASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEA 156
Query: 823 DYGGKRMHWFPSNYVAE 839
P+NYV
Sbjct: 157 RNALGTTGLVPANYVQI 173
Score = 54.0 bits (129), Expect = 2e-08
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW---WQGRVNHCRI 557
++ +S R EA LL + GTFL+R+S G+YSL+ V H I
Sbjct: 12 RSFYFPGMS--REEAHKLLGE-PQVSIGTFLMRDSSR-PGEYSLTVREADEGNAVCHYLI 67
Query: 558 RSKPESGQ-----FYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQP 605
+ F + +L++H++ L L ++P+ +
Sbjct: 68 ERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEV 120
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 107 bits (269), Expect = 6e-28
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
++HG L+ + E E LL + DG FL+R+SE+ G L ++ V RI +
Sbjct: 5 YYHGCLT--KRECEALLLKGGV--DGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKH 60
Query: 563 SGQFYL-----VEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQ 604
G + + ++ F +L L+S Y Q ++ L P+ +
Sbjct: 61 -GYYRIETDAHTPRTIFPNLQELVSKYGKP---GQGLVVHLSNPIMR 103
Score = 99.3 bits (248), Expect = 4e-25
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 659 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRV--EG 716
D +YH T+ + E LL + DG FL+R SE+ + + + + RI G
Sbjct: 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61
Query: 717 RLY-----TIGTTQFESLVELISYYERHPLYKKIELWYPV 751
T F +L EL+S Y + + L P+
Sbjct: 62 YYRIETDAHTPRTIFPNLQELVSKYGKPGQGLVVHLSNPI 101
Score = 44.2 bits (105), Expect = 1e-05
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 431 LAEDKIKHCRIRV--EGRLY-----TIGTTQFESLVELISYYERHPLYKKIELWYPV 480
+ + RI G T F +L EL+S Y + + L P+
Sbjct: 45 SFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQELVSKYGKPGQGLVVHLSNPI 101
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 106 bits (266), Expect = 2e-27
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWW--- 548
V E EKWF +S R +AE L + G+FL+RESE+ G +SLS
Sbjct: 3 VAPVETLEVEKWFFRTIS--RKDAERQLLAPMN-KAGSFLIRESESNKGAFSLSVKDITT 59
Query: 549 -QGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQP 605
V H +IRS G +Y+ + F +L +L+ HY L P
Sbjct: 60 QGEVVKHYKIRSLDN-GGYYISPRITFPTLQALVQHYSKK---GDGLCQKLTLPCVNL 113
Score = 97.8 bits (244), Expect = 2e-24
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 651 VPQPNQHEDKEWYHPTATRSQAED-LLRRVPSDGAFLVRPSENDNSSYVISFRAE----D 705
V E ++W+ T +R AE LL + G+FL+R SE++ ++ +S + +
Sbjct: 3 VAPVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62
Query: 706 KIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 751
+KH +IR G Y F +L L+ +Y + +L P
Sbjct: 63 VVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQKLTLPC 110
Score = 47.7 bits (114), Expect = 8e-07
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 433 EDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPV 480
+ +KH +IR G Y F +L L+ +Y + +L P
Sbjct: 61 GEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQKLTLPC 110
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 104 bits (261), Expect = 3e-27
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S + TVKALYDY+A+ DEL+F + A+I NV++ GGWW+GDYG + +FPSNYV
Sbjct: 1 GSSGSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
Query: 838 AEIEP 842
+I
Sbjct: 61 EDISG 65
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 103 bits (259), Expect = 4e-27
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
VKAL+DY+A+ +DEL+F K AII NV + +GGWWRGDYGGK+ WFPSNYV E+
Sbjct: 5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 105 bits (263), Expect = 5e-27
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+ W+HG + RAE +LL G FLVRES+ +Y LS W G H I+S
Sbjct: 16 QLWYHGAIP--RAEVAELLVH-----SGDFLVRESQG-KQEYVLSVLWDGLPRHFIIQSL 67
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLR-SQEFLITLQEPVPQPNQH 608
Y +E F S+ LI H + +++ + L VP
Sbjct: 68 ---DNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPSGPSS 113
Score = 100 bits (251), Expect = 2e-25
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 646 SSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAED 705
SS ++ WYH R++ +LL G FLVR S+ YV+S +
Sbjct: 2 SSGSSGEVQKPLHEQLWYHGAIPRAEVAELLVH---SGDFLVRESQG-KQEYVLSVLWDG 57
Query: 706 KIKHCRIRVEGRLYTIGTTQFESLVELISYY--ERHPLYKK--IELWYPV 751
+H I+ LY + F S+ LI + + PL KK + L V
Sbjct: 58 LPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAV 107
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYY--ERHPLYKK--IELWYPV 480
L + +H I+ LY + F S+ LI + + PL KK + L V
Sbjct: 54 LWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAV 107
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 106 bits (266), Expect = 7e-27
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 25/176 (14%)
Query: 639 RPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYV 698
+ + + V + ++ +Y T +A LL P G FL+R S + +
Sbjct: 2 KTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEP-AGTFLIRDSSDQRHFFT 60
Query: 699 ISFRAEDKIKHCRIRVEGRLYTIGT--------TQFESLVELISYYERHPLYKKIELWYP 750
+S + + K+ RI+ EG +++ + +F+ +++L+ +Y P L
Sbjct: 61 LSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPT 120
Query: 751 VSEDLIQRMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKH 806
S P PA P S +A Y Y L +
Sbjct: 121 ---------------EPSSEVP-EQPPAQALPGSTPKRAYYIYSGGEKIPLVLSRP 160
Score = 92.4 bits (229), Expect = 7e-22
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
++ ++ EA LL GTFL+R+S ++LS Q + RI+ E
Sbjct: 25 FYWSAVT--GGEANLLLSA---EPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQC--E 77
Query: 563 SGQFYLVEKSY-------FDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYH 615
G F L FD + L+ HY + F + EP +
Sbjct: 78 GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPG-TPSFSLPPTEPSS-EVPEQPPAQAL 135
Query: 616 PTATRSQA 623
P +T +A
Sbjct: 136 PGSTPKRA 143
Score = 44.2 bits (104), Expect = 3e-05
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 432 AEDKIKHCRIRVEGRLYTIGT--------TQFESLVELISYYERHPLYKKIELWYP 479
+ K+ RI+ EG +++ + +F+ +++L+ +Y P L
Sbjct: 65 TQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPT 120
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 103 bits (258), Expect = 8e-27
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNY 836
S + VKA ++++ N+DELS K II EGGWW G G+ WFPSNY
Sbjct: 3 SGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRT-GWFPSNY 61
Query: 837 VAEIEPQHNREDSS 850
V EI+ SS
Sbjct: 62 VREIKSSERSGPSS 75
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 106 bits (266), Expect = 1e-26
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 641 SENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVIS 700
+EN VP Q + Y + AE LL P +G FL+R S ++ + +S
Sbjct: 15 TENLYFQSMLVPDLLQINNNPCYWGVMDKYAAEALLEGKP-EGTFLLRDSAQEDYLFSVS 73
Query: 701 FRAEDKIKHCRIRVEGRLYTIGTT-----QFESLVELISYYERHP--LYKKIELWYPVS 752
FR + H RI ++ + L+ +Y+ ++ + L P+
Sbjct: 74 FRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLI 132
Score = 98.8 bits (246), Expect = 8e-24
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 477 WYPVSEDLIQRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESE 536
+ + + + VP+ + G + + AE LL +GTFL+R+S
Sbjct: 10 GVDLGTENLYFQSMLVPDLLQINNNPCYWGVMD--KYAAEALLEGKP---EGTFLLRDSA 64
Query: 537 TFIGDYSLSFWWQGRVNHCRIRSKPESGQFYLVEKS----YFDSLYSLISHYRTNHLRSQ 592
+S+SF R H RI + F + + L+ HY+ +
Sbjct: 65 QEDYLFSVSFRRYSRSLHARIEQ--WNHNFSFDAHDPCVFHSPDITGLLEHYK-DPSACM 121
Query: 593 EFLITLQEPVPQPN----QH 608
F L P+ + QH
Sbjct: 122 FFEPLLSTPLIRTFPFSLQH 141
Score = 44.5 bits (105), Expect = 3e-05
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTT-----QFESLVELISYYERHP--LYKKIELWYPVS 481
+ H RI ++ + L+ +Y+ ++ + L P+
Sbjct: 76 RYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLI 132
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 101 bits (255), Expect = 1e-26
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ + V+A +++Q N+DELSF K +I EGGWW G + G+ WFPSNYV EI+
Sbjct: 4 NSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRT-GWFPSNYVREIK 62
Query: 842 P 842
P
Sbjct: 63 P 63
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 103 bits (258), Expect = 2e-26
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR-----VNHC 555
E WF LS R +AE L + G+FL+RESE+ G +SLS + V H
Sbjct: 4 EPWFFKNLS--RKDAERQLLAPGNT-HGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTN 587
+IR+ G FY+ + F L+ L+ HY
Sbjct: 61 KIRNLDN-GGFYISPRITFPGLHELVRHYTNA 91
Score = 92.7 bits (231), Expect = 9e-23
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPS-DGAFLVRPSENDNSSYVISFRAEDK-----IKHCR 711
E + W+ +R AE L + G+FL+R SE+ S+ +S R D+ +KH +
Sbjct: 2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYK 61
Query: 712 IRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
IR G Y F L EL+ +Y L P
Sbjct: 62 IRNLDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQ 104
Score = 48.8 bits (117), Expect = 2e-07
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 426 KDEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
+D + + +KH +IR G Y F L EL+ +Y L P
Sbjct: 47 RDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQ 104
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 108 bits (270), Expect = 5e-26
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 466 ERHPLYKKIELWYPVSEDLIQRMGLGVPNDEL--HFGEKWFHGRLSGGRAEAEDLLRRYS 523
++ +KI W + + + L D L H W+ G+++ R +AE++L
Sbjct: 157 QKGARQRKINEWLGIKNETEDQYSLMEDEDALPHHEERTWYVGKIN--RTQAEEMLSGKR 214
Query: 524 HLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISH 583
DGTFL+RES G Y+ S G HC I G + + + SL L+ H
Sbjct: 215 ---DGTFLIRESSQ-RGCYACSVVVDGDTKHCVIYRTAT-GFGFAEPYNLYGSLKELVLH 269
Query: 584 YRTNHLRS--QEFLITLQEPVPQPN 606
Y+ L +TL PV P
Sbjct: 270 YQHASLVQHNDALTVTLAHPVRAPG 294
Score = 106 bits (266), Expect = 2e-25
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 641 SENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVIS 700
+E+ S E HE++ WY R+QAE++L DG FL+R S Y S
Sbjct: 175 TEDQYSLMEDEDALPHHEERTWYVGKINRTQAEEMLSGKR-DGTFLIRESSQRG-CYACS 232
Query: 701 FRAEDKIKHCRIRVEGRLYTIGTT--QFESLVELISYYERHPLYKK-----IELWYPVS 752
+ KHC I + + SL EL+ +Y+ L + + L +PV
Sbjct: 233 VVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVR 291
Score = 50.1 bits (119), Expect = 1e-06
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 431 LAEDKIKHCRIRVEGRLYTIGTT--QFESLVELISYYERHPLYKK-----IELWYPVS 481
+ + KHC I + + SL EL+ +Y+ L + + L +PV
Sbjct: 234 VVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVR 291
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 100 bits (251), Expect = 9e-26
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 771 TPGYMDPASFTPAS-ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRM 829
+ DP + ++Y A +DELS K + + + GWWRG Y G+
Sbjct: 3 SGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQV- 61
Query: 830 HWFPSNYVAEIEPQHNREDSSR 851
WFPSNYV E +
Sbjct: 62 GWFPSNYVTEEGDSPLGDHVGS 83
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 98.8 bits (247), Expect = 2e-25
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
P V+A +++Q N+DELSF K +I EGGWW G + G+ WFPSNYV EI
Sbjct: 2 PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRT-GWFPSNYVREI 59
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 102 bits (257), Expect = 2e-25
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR 717
WY + T ++A++ L+ P +G FL+R S + + IS + + RI +
Sbjct: 15 GQTGWYWGSMTVNEAKEKLKEAP-EGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDG 73
Query: 718 LYTIGTT--------QFESLVELISYYERHPLYKKIELWYPVSEDL 755
+ + + QF+S+V LI YY + K+ P + +
Sbjct: 74 KFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTV 119
Score = 90.3 bits (224), Expect = 4e-21
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 22/125 (17%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
W+ G ++ EA++ L+ +GTFL+R+S ++S + RI +
Sbjct: 17 TGWYWGSMT--VNEAKEKLKEAP---EGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ 71
Query: 561 P-----ESGQFYLVEKSYFDSLYSLISHYRTNHL---------RSQEFLITLQEPVPQPN 606
+S + FDS+ LI +Y R+ + L +P+
Sbjct: 72 DGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYTSA 131
Query: 607 ---QH 608
QH
Sbjct: 132 PSLQH 136
Score = 46.7 bits (111), Expect = 4e-06
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 432 AEDKIKHCRIRVEGRLYTIGTT--------QFESLVELISYYERHPLYKKIELWYPVSED 483
+ RI + + + + QF+S+V LI YY + K+ P +
Sbjct: 59 TSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGT 118
Query: 484 L 484
+
Sbjct: 119 V 119
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 99.3 bits (248), Expect = 2e-25
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ TV ALYDY A DEL+ + II + WW G G + +FP+N+VA
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASE 62
Query: 841 EPQ 843
Sbjct: 63 TLY 65
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 98.4 bits (246), Expect = 3e-25
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ +DYQA++DDEL+ II+N+ + +GGWW G G+R FP N+V EI+
Sbjct: 2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRR-GLFPDNFVREIK 57
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 99.0 bits (247), Expect = 3e-25
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKR 828
SG+ G D IT ALYDYQA DDE+SF II+N+ + GWWRG G+
Sbjct: 3 SGSSGTYDEYE-NDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRY 61
Query: 829 MHWFPSNYVAEIEP 842
FP+NYV +
Sbjct: 62 -GLFPANYVELRQS 74
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 98.0 bits (245), Expect = 3e-25
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
I VKALYDY A+ DEL+F + I + GWW G+ GKR W P+NYV +I
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKR-GWVPANYVQDI 58
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 98.2 bits (245), Expect = 5e-25
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S + KALY +QAR DDEL+ K I+ + E GWW G GK+ FP+ YV
Sbjct: 1 GSSGSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKK-GHFPAAYV 59
Query: 838 AEIEPQHNREDSS 850
E+ +
Sbjct: 60 EELPSNAGNTATK 72
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 96.1 bits (240), Expect = 2e-24
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNY 836
P + IT ALYDYQA DDE+SF II+N+ + GWWRG G+ FP+NY
Sbjct: 2 PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRY-GLFPANY 60
Query: 837 VAEIE 841
V +
Sbjct: 61 VELRQ 65
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 99.3 bits (247), Expect = 2e-24
Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 630 VPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRP 689
P D + ++ + + V + ++ +Y T +A LL P G FL+R
Sbjct: 4 FPLDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEP-AGTFLIRD 62
Query: 690 SENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGT--------TQFESLVELISYYERHPL 741
S + + +S + + K+ RI+ EG +++ + +F+ +++L+ +Y
Sbjct: 63 SSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQA 122
Score = 84.6 bits (209), Expect = 3e-19
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKPE 562
++ ++ EA LL GTFL+R+S ++LS Q + RI+ E
Sbjct: 36 FYWSAVT--GGEANLLLSAEP---AGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQ--XE 88
Query: 563 SGQFYLVEKSY-------FDSLYSLISHYRTNHLRSQE 593
G F L FD + L+ HY
Sbjct: 89 GGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALPGS 126
Score = 35.0 bits (80), Expect = 0.041
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 432 AEDKIKHCRIRVEGRLYTIGT--------TQFESLVELISYYERHPL 470
+ K+ RI+ EG +++ + +F+ +++L+ +Y
Sbjct: 76 TQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQA 122
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 95.8 bits (239), Expect = 4e-24
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S + KAL D++ +DDEL F K+ II+ +++ + W G+ G R WFP+ +V
Sbjct: 1 GSSGSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLR-GWFPAKFV 59
Query: 838 AEIEPQHNREDSS 850
++ + +
Sbjct: 60 EVLDERSKEYSIA 72
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 95.1 bits (237), Expect = 6e-24
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 779 SFTPASITVKALYDYQARNDDELSFPKHAIISNVTRA---EGGWWRGDYGGKRMHWFPSN 835
S + VKALYDY+ + DDELSFP+ AII + + + G+W G++ G+ FPS
Sbjct: 3 SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRI-GVFPSV 61
Query: 836 YVAEIEP 842
V E+
Sbjct: 62 LVEELSS 68
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 94.6 bits (236), Expect = 9e-24
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSN 835
S KALY +A +D ELSF + NV E GW G GK P N
Sbjct: 3 SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKT-GLIPEN 61
Query: 836 YVAEIE 841
YV +
Sbjct: 62 YVEFLS 67
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 94.0 bits (234), Expect = 2e-23
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 769 SGTPGYMDPASFTPASI-TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK 827
SG+ G DP + + V A+YDY +DELSF + AII + + + GW+ G G
Sbjct: 3 SGSSG--DPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGV 60
Query: 828 RMHWFPSNYVAEIEP 842
FP NYV I
Sbjct: 61 T-GLFPGNYVESISG 74
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 92.3 bits (230), Expect = 3e-23
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRA-EGGWWRGDYGGKRMHWFPSNYVAEIEPQ 843
+ YDY A +DDEL+ II NV + E GW G+ G+R FP N+V EI+ +
Sbjct: 2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRR-GMFPDNFVKEIKRE 60
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 102 bits (257), Expect = 4e-23
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
W+HG +S R AE LL +G+FLVRESE+ G S+S ++GRV H RI
Sbjct: 105 HSWYHGPVS--RNAAEYLLS---SGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN-T 158
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHL----RSQEFLITLQEPVPQPNQHEDKEW 613
G+ Y+ +S F++L L+ H+ T +P +W
Sbjct: 159 ASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTIYGVSPNYDKW 215
Score = 90.6 bits (225), Expect = 4e-19
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 646 SSYEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAED 705
S+Y + N E WYH +R+ AE LL +G+FLVR SE+ IS R E
Sbjct: 93 SNY--ITPVNSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEG 149
Query: 706 KIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 752
++ H RI +G+LY ++F +L EL+ ++ L YP
Sbjct: 150 RVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAP 198
Score = 55.5 bits (134), Expect = 5e-08
Identities = 16/79 (20%), Positives = 25/79 (31%)
Query: 763 PDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG 822
+ + + ALYD+ A D+ LS K + + G W
Sbjct: 22 LSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCE 81
Query: 823 DYGGKRMHWFPSNYVAEIE 841
W PSNY+ +
Sbjct: 82 AQTKNGQGWVPSNYITPVN 100
Score = 39.4 bits (92), Expect = 0.005
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 433 EDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGL 490
E ++ H RI +G+LY ++F +L EL+ ++ L YP +
Sbjct: 148 EGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAP-----KRNK 202
Query: 491 GVPNDELHFGEKW 503
+KW
Sbjct: 203 PTIYGVSPNYDKW 215
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 91.5 bits (228), Expect = 6e-23
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYVA 838
A + L+ Y N+DEL+F + II +++ E GWW+G+ GK FP N+
Sbjct: 3 MGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKE-GVFPDNFAV 61
Query: 839 EI 840
+I
Sbjct: 62 QI 63
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 92.9 bits (231), Expect = 7e-23
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 758 RMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG 817
+ G P + P V A+YDY A N+DELSF K +I+ + + +
Sbjct: 8 QKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDP 67
Query: 818 GWWRGDYGGKRMHWFPSNYVAEIEP 842
WW+G+ G FPSNYV
Sbjct: 68 DWWQGEINGVT-GLFPSNYVKMTTD 91
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 102 bits (256), Expect = 7e-23
Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 48/244 (19%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+WFH ++G EAE+LL DG+FL R S++ GD +LS G V H +I++
Sbjct: 4 RRWFHPNITG--VEAENLLLTRGV--DGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNT 59
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQE---FLITLQEPVPQPNQHEDKEWYHPT 617
+ Y EK F +L L+ +Y +H + +E +I L+ P+ + ++ W+H
Sbjct: 60 GDYYDLYGGEK--FATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSER-WFHGH 116
Query: 618 ATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLLR 677
+ +AE LL G+FLVR S++
Sbjct: 117 LSGKEAEKLLTEKGKHGSFLVRESQSH--------------------------------- 143
Query: 678 RVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYE 737
P D VR ++ S + + C+ E + G +F+SL +L+ +Y+
Sbjct: 144 --PGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQ---ELKYDVGGGERFDSLTDLVEHYK 198
Query: 738 RHPL 741
++P+
Sbjct: 199 KNPM 202
Score = 74.9 bits (184), Expect = 4e-14
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
W+HP T +AE+LL DG+FL RPS+++ +S R + H +I+ G Y +
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDL 65
Query: 722 -GTTQFESLVELISYYERHPLYKK------IELWYPV 751
G +F +L EL+ YY H K IEL YP+
Sbjct: 66 YGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL 102
Score = 63.7 bits (155), Expect = 1e-10
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 45/195 (23%)
Query: 433 EDKIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKK------IELWYPVSEDLI 485
+ H +I+ G Y + G +F +L EL+ YY H K IEL YP++
Sbjct: 48 NGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADP 107
Query: 486 QRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLS 545
E+WFHG LSG EAE LL G+FLVRES++ GD+ LS
Sbjct: 108 TS-------------ERWFHGHLSGK--EAEKLLT--EKGKHGSFLVRESQSHPGDFVLS 150
Query: 546 FWWQGRVNHCRIRSKPESGQFY----LVEKSY----------FDSLYSLISHYRTNHLR- 590
V + + G+ ++ FDSL L+ HY+ N +
Sbjct: 151 ------VRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVE 204
Query: 591 SQEFLITLQEPVPQP 605
+ ++ L++P+
Sbjct: 205 TLGTVLQLKQPLNTT 219
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 91.2 bits (227), Expect = 1e-22
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG--GWWRGDYGGKRMHWFPSN 835
S + T A Y++ AR+ ELS + ++ +R G GWW+G+ G+ WFPS
Sbjct: 1 GSSGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRI-GWFPST 59
Query: 836 YVAEIEPQ 843
YV E Q
Sbjct: 60 YVEEEGIQ 67
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 90.4 bits (225), Expect = 2e-22
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+S + + +ALYDY A+N DEL I+ + E GWW + G+R + P +Y+
Sbjct: 2 SSGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQR-GFVPGSYL 60
Query: 838 AEIE 841
++
Sbjct: 61 EKLS 64
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 92.2 bits (229), Expect = 3e-22
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAE---DKIKHCRIRV 714
T +R +A ++L++ PS G ++RP + +Y I+ R E +IKH ++
Sbjct: 13 NPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMS 71
Query: 715 EGRLYTIGTT---QFESLVELISYYERHPLYKKIELWYPVSEDLIQR 758
G+ YTI +L +I Y+ + E+ Q
Sbjct: 72 VGQNYTIELEKPVTLPNLFSVIDYFVKETRGNLRPFIASTDENTGQE 118
Score = 86.4 bits (214), Expect = 3e-20
Identities = 19/109 (17%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ---GRVNHCRIRS 559
+S R EA ++L++ G ++R +YS++ + R+ H ++ S
Sbjct: 17 ACFYTVS--RKEATEMLQKNP--SLGNMILRPGSD-SRNYSITIRQEIDIPRIKHYKVMS 71
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLI--TLQEPVPQPN 606
++ L + +L+S+I ++ + I T + +P+
Sbjct: 72 VGQNYTIELEKPVTLPNLFSVIDYFVKETRGNLRPFIASTDENTGQEPS 120
Score = 44.4 bits (105), Expect = 1e-05
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 434 DKIKHCRIRVEGRLYTIGTT---QFESLVELISYYERHPLYKKIELWYPVSEDLIQR 487
+IKH ++ G+ YTI +L +I Y+ + E+ Q
Sbjct: 62 PRIKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYFVKETRGNLRPFIASTDENTGQE 118
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 90.1 bits (224), Expect = 3e-22
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNY 836
S ++ +AL + A+ D+ L+F KH II+ V + WW G+ G R WFP +Y
Sbjct: 3 SGSSGVENLKAQALCSWTAKKDNHLNFSKHDIIT-VLEQQENWWFGEVHGGR-GWFPKSY 60
Query: 837 VAEIEPQ 843
V I
Sbjct: 61 VKIIPGS 67
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 90.0 bits (224), Expect = 3e-22
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYVAEI 840
AS K ++ Y+A+NDDEL+ + I++ + + + GWW G+ G+R FP N+V +
Sbjct: 1 ASDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-GVFPDNFVKLL 59
Query: 841 EPQHNRED 848
P +
Sbjct: 60 PPLEHHHH 67
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 90.6 bits (225), Expect = 3e-22
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYVA 838
+ S +ALY ++ARN DE+SF II + E GW G + G WFP NYV
Sbjct: 2 SSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNF-GWFPCNYVE 60
Query: 839 EIEPQHNREDSS 850
++ N + S
Sbjct: 61 KMPSSENEKAVS 72
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 89.3 bits (222), Expect = 7e-22
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 775 MDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWF 832
MD T + K ++ Y+A+NDDEL+ + I++ + + + GWW G+ G+R F
Sbjct: 2 MDSR--TKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-GVF 58
Query: 833 PSNYVAEIEPQHNRE 847
P N+V + P +E
Sbjct: 59 PDNFVKLLPPDFEKE 73
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 88.4 bits (220), Expect = 1e-21
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S + + + Y +NDDEL II V E GWW G GK FPSN++
Sbjct: 1 GSSGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKT-GMFPSNFI 59
Query: 838 AEIEP 842
E+
Sbjct: 60 KELSG 64
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 88.0 bits (219), Expect = 1e-21
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
S KALY Y A++ DELSF + II + GWW G GK+ FP+NYV +I
Sbjct: 3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQ-GLFPNNYVTKI 60
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 88.6 bits (220), Expect = 1e-21
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH----WFPSNYVAEIE 841
+ Y A ++LS +I + + GWW+G+ + WFP+++V +
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG 68
Query: 842 PQHNREDSS 850
P R
Sbjct: 69 PSSERASGP 77
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 87.7 bits (218), Expect = 2e-21
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ALY ++ R DEL F + II ++ WW+G G+ PSNYVAE
Sbjct: 9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRT-GLIPSNYVAEQS 63
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 87.4 bits (217), Expect = 3e-21
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+S + + Y +++ DE+ F K + + + GWW Y GK W P++Y+
Sbjct: 2 SSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKE-GWAPASYL 60
Query: 838 AEIEPQ 843
+ +
Sbjct: 61 KKAKDS 66
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 87.0 bits (216), Expect = 3e-21
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
V ALYDYQ ++ E++ K I++ + WW+ + ++ + P+ YV +++P
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG-FVPAAYVKKLDP 62
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 94.6 bits (236), Expect = 6e-21
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSK 560
+ W+HG + RAE +LL G FLVRES+ +Y LS W G H I+
Sbjct: 13 QLWYHGAIP--RAEVAELLVH-----SGDFLVRESQG-KQEYVLSVLWDGLPRHFIIQ-- 62
Query: 561 PESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEWYH 615
Y +E F S+ LI H + Q + + + H
Sbjct: 63 -SLDNLYRLEGEGFPSIPLLIDHLLST---QQPLTKKSGVVLHRAVPKDKWVLNH 113
Score = 90.4 bits (225), Expect = 2e-19
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 658 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR 717
++ WYH R++ +LL G FLVR S+ YV+S + +H I+
Sbjct: 11 HEQLWYHGAIPRAEVAELLV---HSGDFLVRESQGKQE-YVLSVLWDGLPRHFIIQSLDN 66
Query: 718 LYTIGTTQFESLVELISYYERHP 740
LY + F S+ LI +
Sbjct: 67 LYRLEGEGFPSIPLLIDHLLSTQ 89
Score = 44.9 bits (107), Expect = 7e-05
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 433 EDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLGV 492
+ +H I+ LY + F S+ LI + + + + + +
Sbjct: 53 DGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVL-HRAVPKDKWVL 111
Query: 493 PNDELHFGEK 502
+++L GE+
Sbjct: 112 NHEDLVLGEQ 121
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 95.9 bits (239), Expect = 6e-21
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 491 GVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQG 550
GV WFHG+++ R +AE LL G FLVRES + GDY+L +G
Sbjct: 70 GVKAGTKLSLMPWFHGKIT--REQAERLLYP---PETGLFLVRESTNYPGDYTLCVSCEG 124
Query: 551 RVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLI---TLQEPVPQPNQ 607
+V H RI + + + E+ YF++L L+ HY T+ LI ++ V ++
Sbjct: 125 KVEHYRIMY--HASKLSIDEEVYFENLMQLVEHYTTDADGLCTRLIKPKVMEGTVAAQDE 182
Query: 608 HEDKEW 613
W
Sbjct: 183 FYRSGW 188
Score = 86.6 bits (215), Expect = 6e-18
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 648 YEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKI 707
E V + W+H TR QAE LL P G FLVR S N Y + E K+
Sbjct: 68 REGVKAGTKLSLMPWFHGKITREQAERLLYP-PETGLFLVRESTNYPGDYTLCVSCEGKV 126
Query: 708 KHCRIRV-EGRLYTIGTTQFESLVELISYYERHP 740
+H RI +L FE+L++L+ +Y
Sbjct: 127 EHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDA 160
Score = 53.1 bits (128), Expect = 2e-07
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWW---RGDYGGKRMHWFP 833
+ P+ A Y++ + +L F K +++ V + W + G R P
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG--REGIIP 61
Query: 834 SNYVAEIE 841
+NYV + E
Sbjct: 62 ANYVQKRE 69
Score = 39.6 bits (93), Expect = 0.004
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 433 EDKIKHCRIRV-EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLG 491
E K++H RI +L FE+L++L+ +Y L P +
Sbjct: 123 EGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDADGLCTRLIKPKVMEGTVAAQDE 182
Query: 492 VPNDE 496
Sbjct: 183 FYRSG 187
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 86.3 bits (214), Expect = 9e-21
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
V ALYDYQ ++ E++ K I++ + WW+ + ++ + P+ YV +++P
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG-FVPAAYVKKLDP 59
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 85.8 bits (213), Expect = 9e-21
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH--WFPSNYVAEIEP 842
VK +YD QA NDDEL+F + +I + WW G G+ FP ++V +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 70
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 85.8 bits (213), Expect = 9e-21
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ I A +DY R ELSF K A + RA WW G + G P Y+
Sbjct: 6 SGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGID-GLIPHQYIVVQ 64
Query: 841 E 841
+
Sbjct: 65 D 65
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 85.4 bits (212), Expect = 1e-20
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHNR 846
K L++Y +N+DEL II E GWW G K FPSN+V E+E +H+
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKL-GLFPSNFVKELELEHHH 62
Query: 847 E 847
Sbjct: 63 H 63
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 85.8 bits (213), Expect = 1e-20
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S + +ALYD++ N+ EL F + II+ + + W+ G G +FP NYV
Sbjct: 1 GSSGSSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHS-GFFPINYV 59
Query: 838 AEIEPQHNREDSS 850
+ + SS
Sbjct: 60 EILVALPHSGPSS 72
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 86.3 bits (214), Expect = 1e-20
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKR 828
SG+ G + + V+ALYD++A D+EL+F II + ++ WW+G+
Sbjct: 3 SGSSGSEIQLN-NKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGI 61
Query: 829 MHWFPSNYVAEIEPQHNREDSS 850
FPSN+V +
Sbjct: 62 -GLFPSNFVTTNLNIETEAAAV 82
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 86.4 bits (214), Expect = 1e-20
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTR----AEGGWWRGDY 824
S + AS + +A YD+ A +D+E+SF +++ + GW
Sbjct: 2 SSGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL 61
Query: 825 GGKRMHWFPSNYVAEIEPQHNREDSS 850
G+ P+NYV + + R+
Sbjct: 62 DGQTTGLIPANYVKILGKRRGRKTIE 87
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 85.0 bits (211), Expect = 2e-20
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSN 835
S + K ++ Y+A+NDDEL+ + I++ + + + GWW G+ G+R FP N
Sbjct: 1 GSSGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-GVFPDN 59
Query: 836 YVAEIE 841
+V +
Sbjct: 60 FVKLLS 65
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 85.1 bits (211), Expect = 2e-20
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 768 VSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK 827
+ G+ + S V ALYDYQ ++ E++ K I++ + WW+ + +
Sbjct: 1 MRGSHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDR 60
Query: 828 RMHWFPSNYVAEI-----EPQHNR 846
+ + P+ YV ++ PQ +
Sbjct: 61 Q-GFVPAAYVKKLAAAWSHPQFEK 83
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 84.1 bits (209), Expect = 3e-20
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
+ALY ++ R DEL F + II ++ WW+G G+ PSNYVAE
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRT-GLIPSNYVAE 57
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 84.7 bits (210), Expect = 3e-20
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ A + Y R ELSF + ++ RA WWRG++ G R P Y+
Sbjct: 8 EGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMR-GLIPHKYITLPA 66
Query: 842 P 842
Sbjct: 67 G 67
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 84.2 bits (209), Expect = 4e-20
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 773 GYMDPASFTPASI-TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHW 831
G MDP P + KALYD++ ND EL F + +I+ + + W+ G G+ +
Sbjct: 1 GAMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQS-GF 59
Query: 832 FPSNYVAEIEP 842
FP +YV + P
Sbjct: 60 FPLSYVQVLVP 70
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 84.5 bits (209), Expect = 4e-20
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 779 SFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVA 838
S + + + YQ D E+SFP + + + E GWW +G W PS+Y+
Sbjct: 3 SGSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELE-GWAPSHYLV 61
Query: 839 EIEPQHNREDSSR 851
E +
Sbjct: 62 LDENEQPDPSGKE 74
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 83.3 bits (207), Expect = 4e-20
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEG-GWWRGDYGGKRMHWFPSNYV 837
++A+Y Y+A+ DDE+S II+ + +G GW G+ G + FP++Y
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLK-GLFPTSYC 53
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 83.8 bits (208), Expect = 4e-20
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
A+ DY A ++ +LSF + I + + WW G+ G + P+N+V +
Sbjct: 9 EFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCC-GYIPANHVGKHS 63
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 84.4 bits (209), Expect = 4e-20
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ ++ +A++D+ + EL+F +I + + WW G + WFP+++V
Sbjct: 8 DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEE-GWFPASFVRLWV 66
Query: 842 PQ 843
Q
Sbjct: 67 NQ 68
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 84.4 bits (209), Expect = 6e-20
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 767 TVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGG 826
+++G + + Y +NDDEL II V E GWW G G
Sbjct: 1 SMTGGQQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG 60
Query: 827 KRMHWFPSNYVAEIEPQHNREDSSR 851
K FPSN++ E+ + + S+
Sbjct: 61 KT-GMFPSNFIKELSGESDELGISQ 84
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 83.4 bits (207), Expect = 6e-20
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
K L++Y +N+DEL II E GWW G K FPSN+V
Sbjct: 1 GPLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKL-GLFPSNFV 59
Query: 838 AEIEP 842
E+E
Sbjct: 60 KELEV 64
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 82.7 bits (205), Expect = 1e-19
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+S + ALY Y + +L+F + I VT+ +G WW G G + FPSNYV
Sbjct: 2 SSGSSGGEEYIALYPYSSVEPGDLTFTEGEEI-LVTQKDGEWWTGSIGDRS-GIFPSNYV 59
Query: 838 AEIEP 842
+
Sbjct: 60 KPKDS 64
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 82.7 bits (205), Expect = 1e-19
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ KAL +Y+ +N +L F K +I + + W++G+ G FP++ V I
Sbjct: 5 SSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVS-GIFPASSVEVIS 63
Query: 842 P 842
Sbjct: 64 G 64
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 82.3 bits (204), Expect = 1e-19
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S + T ALY + + +++L II+ + + WW+G + +FP+N+V
Sbjct: 1 GSSGSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRI-GFFPANFV 59
Query: 838 AEIEP 842
+
Sbjct: 60 QRLSG 64
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 81.9 bits (203), Expect = 2e-19
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRA-EGGWWRGDYGGKRMHWFPSNYVAEI 840
+ V+ALYDY + DELSF ++ + E GW RG ++ +P+NYV I
Sbjct: 4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 81.0 bits (201), Expect = 3e-19
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ALYD++A +DEL F ++ + + WW G K FP+NYVA +
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKL-GLFPANYVAPM 56
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 81.5 bits (202), Expect = 3e-19
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
+A +D++A+ EL K I+ + + W+ G++ G+ FP Y+ +
Sbjct: 9 PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRV-GIFPRTYIELLSG 64
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 81.2 bits (201), Expect = 4e-19
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGG----KRMHWFPSNYV 837
V A + Y++ +D+L+F K I + + W+ G+Y FP ++V
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 82.9 bits (204), Expect = 4e-19
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 659 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAE----DKIKHCRIRV 714
+ +R +A+ LL R P G L+RPS + ++ R ++H +++
Sbjct: 20 ETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKR 79
Query: 715 EGRLYTIGTTQ---FESLVELISYYERH 739
EG Y I Q SL +++Y+ H
Sbjct: 80 EGPKYVIDVEQPFSCTSLDAVVNYFVSH 107
Score = 57.9 bits (139), Expect = 3e-10
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 503 WFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR----VNHCRIR 558
++S R EA+ LL RY G L+R S S++ V H +++
Sbjct: 23 SCFLKVS--RLEAQLLLERYP--ECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVK 78
Query: 559 SKPESGQFYLVEKSY-FDSLYSLISHYRTN 587
+ VE+ + SL ++++++ ++
Sbjct: 79 RE-GPKYVIDVEQPFSCTSLDAVVNYFVSH 107
Score = 42.4 bits (99), Expect = 6e-05
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 412 LPEGSDEQTPCAIAKDEGKLAEDKIKHCRIRVEGRLYTIGTTQ---FESLVELISYYERH 468
L D ++ + ++H +++ EG Y I Q SL +++Y+ H
Sbjct: 48 LRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSH 107
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 81.2 bits (201), Expect = 4e-19
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRA---EGGWWRGDYGGKRMHWFPS 834
S + + +ALYD DEL+F + I++ + + GWW+ G++ P+
Sbjct: 1 GSSGSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQ-GLAPA 59
Query: 835 NYVAEIEP 842
N + +
Sbjct: 60 NRLQILSG 67
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 80.7 bits (200), Expect = 4e-19
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V LYDYQ ++ EL+ K I++ + WW+ + G++ + P+ Y+ +++
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQ-GFVPAAYLKKLD 62
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 80.7 bits (200), Expect = 5e-19
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
V+ALYD++A D+EL+F +I+ + ++ WW+G+ FPSN+V
Sbjct: 7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGT-GLFPSNFVTTDL 61
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 80.3 bits (198), Expect = 6e-19
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
I + Y A +DELS + ++ + GWWRG Y G+ WFPSNYV E
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQI-GWFPSNYVLEEV 57
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 89.8 bits (223), Expect = 6e-19
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLS-----FWWQGRVNHC 555
E+WF +S R +AE L G+F++R+SET G YSLS V H
Sbjct: 70 EEWFFKGIS--RKDAERQLLA-PGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 126
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHEDKEW 613
+IR+ G FY+ +S F +L L+ HY+ + + L E W
Sbjct: 127 KIRTLDN-GGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAW 183
Score = 73.6 bits (181), Expect = 8e-14
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 12/143 (8%)
Query: 622 QAEDLLRRVPSDGAF-LVRPSENDNSSYEP---VPQPNQHEDKEWYHPTATRSQAEDLLR 677
Q D + + G + R Y P V + + E +EW+ +R AE L
Sbjct: 28 QKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLL 87
Query: 678 RVPS-DGAFLVRPSENDNSSYVISFRAED-----KIKHCRIRV--EGRLYTIGTTQFESL 729
+ G+F++R SE SY +S R D +KH +IR G Y + F +L
Sbjct: 88 APGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTL 147
Query: 730 VELISYYERHPLYKKIELWYPVS 752
EL+ +Y++ +L P
Sbjct: 148 QELVDHYKKGNDGLCQKLSVPCM 170
Score = 54.3 bits (131), Expect = 9e-08
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAE 839
+ I V ALYDY+A + ++LSF K + V G WW+ ++ + PSNYVA
Sbjct: 5 SGIRIIVVALYDYEAIHHEDLSFQKGDQM-VVLEESGEWWKARSLATRKEGYIPSNYVAR 63
Query: 840 IE 841
++
Sbjct: 64 VD 65
Score = 36.6 bits (85), Expect = 0.030
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 426 KDEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSED 483
+D D +KH +IR G Y + F +L EL+ +Y++ +L P
Sbjct: 113 RDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSS 172
Query: 484 LIQRMGLG----VPNDELHFGEK 502
Q+ +P + L +K
Sbjct: 173 KPQKPWEKDAWEIPRESLKLEKK 195
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 81.3 bits (201), Expect = 6e-19
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIIS--NVTRAEGGWWRGDYGGKRMHWFPSN 835
+S + S V AL Y N LSF + +I V E GW G GG+ FP++
Sbjct: 2 SSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRS-GLFPAD 60
Query: 836 YVAEI-EPQHNREDSSR 851
V P + R
Sbjct: 61 IVQPAAAPDFSFSKEQR 77
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 79.9 bits (198), Expect = 7e-19
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V+AL+D+ + D EL F + I + ++ WW+G G+ FP NYV +
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQT-GMFPRNYVTAV 57
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 80.4 bits (199), Expect = 7e-19
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
+ +A+Y Y+ +N+DEL + + + + + GW+ G ++ FP NYVA +
Sbjct: 5 SSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
Query: 841 E 841
Sbjct: 65 S 65
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 81.0 bits (200), Expect = 8e-19
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKR 828
SG+ G + P A + L+ I+ G W G+ G++
Sbjct: 3 SGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRK 62
Query: 829 MHWFPSNYVAEIEPQHNREDSS 850
FP +V +PQ+ E+ S
Sbjct: 63 -GLFPFTHVKIFDPQNPDENES 83
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 82.8 bits (204), Expect = 8e-19
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSNYVAEIEPQ 843
T KA YD+ AR+ ELS + II + + + GWWRG+ G+ WFPSNYV E +
Sbjct: 7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRI-GWFPSNYVEEDYSE 64
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 79.9 bits (198), Expect = 8e-19
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
A +DY R+ ELSF K A + RA WW G + G P Y+
Sbjct: 8 FAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGID-GLVPHQYI 58
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 80.5 bits (199), Expect = 1e-18
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 775 MDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRA-EGGWWRGDYGGKRMHWFP 833
M P + +AL DY + L F ++ II+ + E W+ G GK FP
Sbjct: 1 MGPLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKE-GSFP 59
Query: 834 SNYVAEIEPQ 843
++V +
Sbjct: 60 VDHVEILLSD 69
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 80.7 bits (199), Expect = 1e-18
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 766 NTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTR-----AEGGWW 820
+ Y TPA A++DY+A D+EL+ + + +++ + GWW
Sbjct: 11 VDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWW 70
Query: 821 RGDYGGKRMHWFPSNYVA 838
G R+ FPSNYVA
Sbjct: 71 TGQLPSGRVGVFPSNYVA 88
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 79.6 bits (197), Expect = 1e-18
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+S + + +Y+ + + ELS ++ + + E GWW ++ W P+ Y+
Sbjct: 2 SSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQ-GWVPATYL 60
Query: 838 AEIEP 842
Sbjct: 61 EAQNS 65
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 79.7 bits (197), Expect = 1e-18
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGD--YGG 826
SG+ G+ +S V+ + A+ DE++ + ++ V + E GW G+ G
Sbjct: 3 SGSSGWQGLSS-KGDLPQVEITKAFFAKQADEVTLQQADVV-LVLQQEDGWLYGERLRDG 60
Query: 827 KRMHWFPSNYVAEIEPQH 844
+ WFP ++ I
Sbjct: 61 ET-GWFPEDFARFISGPS 77
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 79.2 bits (196), Expect = 2e-18
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
AL+ Y A +EL K I + + + GW +G R FPS+YV +
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 79.3 bits (196), Expect = 2e-18
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 786 TVKALYDYQARND-DELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
V+A+ Y D DE+SF K + E GW + + V E+
Sbjct: 9 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVS 66
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 78.9 bits (195), Expect = 3e-18
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
+ V+A+YD++A D+EL+F II+ + ++ WW+G+ FPSN+V
Sbjct: 15 HEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGI-GLFPSNFV 69
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 78.4 bits (194), Expect = 3e-18
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
V+AL+D+ ++++L F K I+ + E WW + + P YV + H+
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHHHH 64
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 78.9 bits (195), Expect = 3e-18
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTR---AEGGWWRGDYGGKRMHWFPSNYVAE 839
++ KALYD A + DELSF K I++ + + GWW G++ P N +
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQ-GIVPGNRLKI 60
Query: 840 IEPQHNRE 847
+ ++++
Sbjct: 61 LVGMYDKK 68
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 78.9 bits (195), Expect = 3e-18
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 767 TVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYG 825
+++GT ALYDY+A +D+LSF K + +EG WW
Sbjct: 2 SMTGTL----RTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLT 57
Query: 826 GKRMHWFPSNYVAEIE 841
+ PSNYVA ++
Sbjct: 58 TGETGYIPSNYVAPVD 73
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 78.8 bits (195), Expect = 3e-18
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
+ LYD++ N EL F + II+ + + W+ G G+ +FP NYV I P
Sbjct: 5 CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGES-GFFPINYVEVIVP 60
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 79.0 bits (195), Expect = 3e-18
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGG 826
SG+ G D + + + LYDY A N ELS +I+ + + W G+ G
Sbjct: 3 SGSSGLNDLKE-SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGN 61
Query: 827 KRMHWFPSNYVAEIEPQH 844
++ P Y+ +
Sbjct: 62 QK-GKVPITYLELLNSGP 78
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 80.3 bits (198), Expect = 5e-18
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 21/103 (20%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFW------------- 547
+ W+ LS R +A LL+ G FL+R+S +F G Y L+
Sbjct: 20 KFWYKPHLS--RDQAIALLKDKD---PGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKG 74
Query: 548 --WQGRVNHCRIRSKPESGQFYLV-EKSYFDSLYSLISHYRTN 587
+ V H I + P+ + + YF SL +L+S + +
Sbjct: 75 DPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSIS 117
Score = 77.2 bits (190), Expect = 5e-17
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 20/114 (17%)
Query: 656 QHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRA------------ 703
K WY P +R QA LL+ GAFL+R S + +Y ++ +
Sbjct: 16 SDTSKFWYKPHLSRDQAIALLKDKD-PGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKG 74
Query: 704 ---EDKIKHCRIRVEGRLYTIGT----TQFESLVELISYYERHPLYKKIELWYP 750
E ++H I + I F SL L+S + P+ L P
Sbjct: 75 DPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIP 128
Score = 38.0 bits (88), Expect = 0.003
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 417 DEQTPCAIAKDEGKLAEDKIKHCRIRVEGRLYTIGT----TQFESLVELISYYERHPLYK 472
P + +G E ++H I + I F SL L+S + P+
Sbjct: 62 VATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISL 121
Query: 473 KIELWYP 479
L P
Sbjct: 122 PCCLRIP 128
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 76.4 bits (189), Expect = 1e-17
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V+AL+D+ + EL+F + +I+ + + + WW G +R FPSNYV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR-GIFPSNYVCPY 57
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 76.9 bits (190), Expect = 1e-17
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
+ +D+QA++ EL+ K I+ + W G++ G+ FP+NYV + +H+
Sbjct: 3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRL-GIFPANYVEVLPLEHH 61
Query: 846 RED 848
Sbjct: 62 HHH 64
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 86.1 bits (213), Expect = 1e-17
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR-----VNHC 555
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS V H
Sbjct: 148 EEWYFGKIT--RRESERLLLN-AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 204
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLR-SQEFLITLQEPVPQPNQHEDKEW 613
+IR K +SG FY+ ++ F+SL L+++Y + PQ W
Sbjct: 205 KIR-KLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAW 262
Score = 80.3 bits (198), Expect = 9e-16
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 11/139 (7%)
Query: 637 LVRPSENDNSSYEP---VPQPNQHEDKEWYHPTATRSQAEDLLRRVP-SDGAFLVRPSEN 692
L + Y P V + + +EWY TR ++E LL G FLVR SE
Sbjct: 122 LAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESET 181
Query: 693 DNSSYVISFRAEDK-----IKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKI 745
+Y +S D +KH +IR G Y TQF SL +L++YY +H
Sbjct: 182 TKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCH 241
Query: 746 ELWYPVSEDLIQRMGLEPD 764
L Q GL D
Sbjct: 242 RLTTVCPTSKPQTQGLAKD 260
Score = 54.1 bits (130), Expect = 1e-07
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWR-GDYGGKRMHWFPSN 835
T ALYDY++R + +LSF K + V EG WW + + PSN
Sbjct: 78 AGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSN 137
Query: 836 YVAEIEP 842
YVA +
Sbjct: 138 YVAPSDS 144
Score = 42.6 bits (100), Expect = 5e-04
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 426 KDEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSED 483
D +KH +IR G Y TQF SL +L++YY +H L
Sbjct: 191 SDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTS 250
Query: 484 LIQRMGLG-----VPNDELHFGEK 502
Q GL +P + L K
Sbjct: 251 KPQTQGLAKDAWEIPRESLRLEVK 274
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 85.6 bits (212), Expect = 1e-17
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR-----VNHC 555
E+W+ G+++ R E+E LL + GTFLVRESET G Y LS V H
Sbjct: 65 EEWYFGKIT--RRESERLLLN-AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 121
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLIT-LQEPVPQPNQHEDKEW 613
+IR K +SG FY+ ++ F+SL L+++Y + L T PQ W
Sbjct: 122 KIR-KLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAW 179
Score = 77.1 bits (190), Expect = 6e-15
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 11/139 (7%)
Query: 637 LVRPSENDNSSYEP---VPQPNQHEDKEWYHPTATRSQAEDLLRR-VPSDGAFLVRPSEN 692
L + Y P V + + +EWY TR ++E LL G FLVR SE
Sbjct: 39 LAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESET 98
Query: 693 DNSSYVISFRAED-----KIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKI 745
+Y +S D +KH +IR G Y TQF SL +L++YY +H
Sbjct: 99 TKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCH 158
Query: 746 ELWYPVSEDLIQRMGLEPD 764
L Q GL D
Sbjct: 159 RLTTVCPTSKPQTQGLAKD 177
Score = 51.7 bits (124), Expect = 6e-07
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWW--RGDYGGKRMHWFPSNYVAEIEP 842
ALYDY++R + +LSF K + V EG WW G+ + PSNYVA +
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTG-YIPSNYVAPSDS 61
Score = 42.4 bits (100), Expect = 5e-04
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 426 KDEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSED 483
D +KH +IR G Y TQF SL +L++YY +H L
Sbjct: 108 SDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTS 167
Query: 484 LIQRMGLG-----VPNDELHFGEK 502
Q GL +P + L K
Sbjct: 168 KPQTQGLAKDAWEIPRESLRLEVK 191
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 76.4 bits (189), Expect = 1e-17
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTR--AEGGWWRGDYGGKRMHWFPSNYVAEI 840
+S ALY + +L F K +I+ + + ++ WW G G+ FP+NYV +
Sbjct: 2 SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGRE-GIFPANYVELV 60
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 76.5 bits (189), Expect = 1e-17
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGD-YGGKRMHWFPSNY 836
S + A +++ E+SF K I+ + + + W+ G G R FP Y
Sbjct: 1 GSSGSSGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITY 60
Query: 837 VAEIEP 842
V I
Sbjct: 61 VDVISG 66
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 76.1 bits (188), Expect = 2e-17
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK-RMHWFPSNYV 837
A YDY A D+EL+F ++ I N+ + WW G+ FPSNYV
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 76.7 bits (189), Expect = 2e-17
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAE--GGWWRGDYGG 826
SG+ G+ + I V ALY ++ + +L+F I+ +++ + WW G G
Sbjct: 3 SGSSGH-ERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRG 61
Query: 827 KRMHWFPSNYVAEIEP 842
+ FP+NYV
Sbjct: 62 QT-GIFPANYVTMNSG 76
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 76.2 bits (188), Expect = 2e-17
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSNYVAE 839
+ S+ A YD++A DDELSF + I+ + + W++ + GK + P NY+
Sbjct: 6 SVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKD-GFIPKNYIEM 64
Query: 840 IEP 842
Sbjct: 65 KPH 67
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 75.7 bits (187), Expect = 3e-17
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
+ L+ + +EL I+ + + W + G++ P NY+ +
Sbjct: 9 AHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQK-GLVPCNYLEPVSG 64
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 75.9 bits (187), Expect = 4e-17
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 767 TVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYG 825
S I V ALYDY+A + ++LSF K + V G WW+
Sbjct: 8 PNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQM-VVLEESGEWWKARSLA 66
Query: 826 GKRMHWFPSNYVAEIE 841
++ + PSNYVA ++
Sbjct: 67 TRKEGYIPSNYVARVD 82
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 75.9 bits (187), Expect = 4e-17
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYDY A +LSF K + G WW + PSNYVA ++
Sbjct: 8 LFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 75.2 bits (185), Expect = 7e-17
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH------- 830
S + AL+DYQAR ++LSF + + + GWW + K+
Sbjct: 1 GSSGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQ 60
Query: 831 -WFPSNYVAEIE 841
+ PSNYVAE
Sbjct: 61 GYIPSNYVAEDS 72
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 74.7 bits (184), Expect = 7e-17
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 782 PASITVKALYDYQARNDD--ELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
KALY Y A +DD E+SF ++ I+ V+ EG WW+ PSNYV
Sbjct: 3 NFIYKAKALYPYDADDDDAYEISFEQNEIL-QVSDIEGRWWKARRANGETGIIPSNYVQL 61
Query: 840 IEP 842
I+
Sbjct: 62 IDG 64
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 74.1 bits (183), Expect = 8e-17
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
V+ALY + + D +L + + + W++G G+ FP+NYV
Sbjct: 4 YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRT-GIFPANYV 54
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 74.7 bits (184), Expect = 8e-17
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 779 SFTPASITVKALYDYQARNDDELSFPKHAIISNVTR----AEGGWWRGDYGGKRMHWFPS 834
S + A+Y ++ARN +ELS + + + WW + GK+ + PS
Sbjct: 8 SEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKK-GYVPS 66
Query: 835 NYVAEIEP 842
NY+ + E
Sbjct: 67 NYIRKTES 74
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 74.6 bits (184), Expect = 8e-17
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
T V ALYDY N ++L K + + WWR + + PSNYV E
Sbjct: 5 TSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEA 64
Query: 841 EP 842
E
Sbjct: 65 ED 66
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 74.7 bits (184), Expect = 9e-17
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
S +ALYDY+AR +D+LSF K + +EG WW + PS Y+A +
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV 62
Query: 841 EPQHNREDSSR 851
+ ++D +
Sbjct: 63 DRLDYKDDDDK 73
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 83.4 bits (206), Expect = 1e-16
Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
+WFH LSG +AE LL+ G+FL R S GD+SLS +V H RI++
Sbjct: 3 RWFHRDLSG--LDAETLLKGRGV--HGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSG 58
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEF---LITLQEPVPQPNQHEDKEWYHPTA 618
+ Y EK F +L L+ +Y Q+ +I L+ P+ + + WYH
Sbjct: 59 DFYDLYGGEK--FATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSD-PTSERWYHGHM 115
Query: 619 TRSQAEDLLRRVPSDGAFLVRPS 641
+ QAE LL+ FLVR S
Sbjct: 116 SGGQAETLLQAKGEPWTFLVRES 138
Score = 73.8 bits (181), Expect = 9e-14
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
W+H + AE LL+ G+FL RPS + + +S R D++ H RI+ G Y +
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 722 -GTTQFESLVELISYYERHP 740
G +F +L EL+ YY +
Sbjct: 64 YGGEKFATLTELVEYYTQQQ 83
Score = 47.6 bits (113), Expect = 1e-05
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 433 EDKIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLG 491
D++ H RI+ G Y + G +F +L EL+ YY + L R G
Sbjct: 46 GDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQ------------GVLQDRDGTI 93
Query: 492 VP-NDELHFG----EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF 546
+ L+ E+W+HG +SGG +AE LL+ + TFLVRES + GD+ LS
Sbjct: 94 IHLKYPLNCSDPTSERWYHGHMSGG--QAETLLQ--AKGEPWTFLVRESLSQPGDFVLSV 149
Query: 547 W---------WQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLR-SQEFLI 596
RV H ++ E G++ + FDSL L+ H++ + + +
Sbjct: 150 LSDQPKAGPGSPLRVTHIKVMC--EGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFV 207
Query: 597 TLQEPVPQPNQHEDKEWYHPTATRSQAED 625
L++P + + E
Sbjct: 208 YLRQPYYATRVNAADIENRVLELNKKQES 236
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 83.4 bits (206), Expect = 1e-16
Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 502 KWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRSKP 561
+WFH LSG +AE LL+ G+FL R S GD+SLS +V H RI++
Sbjct: 3 RWFHRDLSG--LDAETLLKGRGV--HGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSG 58
Query: 562 ESGQFYLVEKSYFDSLYSLISHYRTNHLRSQE---FLITLQEPVPQPNQHEDKEWYHPTA 618
+ Y EK F +L L+ +Y Q+ +I L+ P+ + + WYH
Sbjct: 59 DFYDLYGGEK--FATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSD-PTSERWYHGHM 115
Query: 619 TRSQAEDLLRRVPSDGAFLVRPS 641
+ QAE LL+ FLVR S
Sbjct: 116 SGGQAETLLQAKGEPWTFLVRES 138
Score = 73.4 bits (180), Expect = 1e-13
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 662 WYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTI 721
W+H + AE LL+ G+FL RPS + + +S R D++ H RI+ G Y +
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 722 -GTTQFESLVELISYYERHP 740
G +F +L EL+ YY +
Sbjct: 64 YGGEKFATLTELVEYYTQQQ 83
Score = 44.5 bits (105), Expect = 1e-04
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 433 EDKIKHCRIRVEGRLYTI-GTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLG 491
D++ H RI+ G Y + G +F +L EL+ YY + L R G
Sbjct: 46 GDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQ------------GVLQDRDGTI 93
Query: 492 VPNDELHFG-----EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSF 546
+ E+W+HG +SGG +AE LL+ + TFLVRES + GD+ LS
Sbjct: 94 IHLKYPLNCSDPTSERWYHGHMSGG--QAETLLQ--AKGEPWTFLVRESLSQPGDFVLSV 149
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 74.2 bits (183), Expect = 1e-16
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG--DYGGKRMHWFPSNYVAEI 840
T +A+YDY A+++DE+SF I NV + GW G G+ P+NY+ +
Sbjct: 8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRT-GMLPANYIEFV 63
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 74.3 bits (183), Expect = 1e-16
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
A+ +AL+D+ + EL+F +I ++R W G G FP ++V ++
Sbjct: 16 MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGAT-GIFPLSFVKILK 74
Query: 842 P 842
Sbjct: 75 D 75
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 73.7 bits (182), Expect = 1e-16
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+AL+D+ + EL+F +I ++R W G G FP ++V ++
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGAT-GIFPLSFVKILK 60
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 74.0 bits (182), Expect = 1e-16
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 782 PASITVKALYDYQARN-------DDELSFPKHAIISNVTRA-EGGWWRGDYGGKRMHWFP 833
+ + ALYDY R + EL+F II+ E G++ G+ G++ P
Sbjct: 5 SSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQK-GLVP 63
Query: 834 SNYVAEIEP 842
SN++ E+
Sbjct: 64 SNFLEEVSG 72
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 73.4 bits (181), Expect = 2e-16
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGD-YGGKRMHWFPSNYVAEI 840
P + A +++ E+SF K I+ + + + W+ G G R FP YV I
Sbjct: 4 PFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
Query: 841 E 841
+
Sbjct: 64 K 64
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 72.6 bits (179), Expect = 3e-16
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
V+AL+ Y+A ++L F + II +++ W G+ GK FP +V +
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKV-GIFPKVFVEDS 60
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 73.2 bits (180), Expect = 3e-16
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 775 MDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH---- 830
M L+D+++R D+ELSF + + E WW
Sbjct: 1 MVSRDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQG 60
Query: 831 WFPSNYVAEIE 841
+ P NY+AE E
Sbjct: 61 YVPHNYLAERE 71
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 72.8 bits (179), Expect = 4e-16
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
V + + D L K II +++ G W G K F YV +
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKV-GTFKFIYVDVLSS 68
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 73.3 bits (180), Expect = 4e-16
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAE--GGWWRGDYGG 826
SG+ G + + V+ LY + + ++EL+F K + + + E WW+
Sbjct: 3 SGSSGLSNGQG-SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR 61
Query: 827 KRMHWFPSNYVAEIEPQ 843
++ P NYV +
Sbjct: 62 GQVGLVPKNYVVVLSDG 78
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 76.3 bits (187), Expect = 4e-16
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 454 QFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLGVPNDELHFGEKWFHGRLSGGRA 513
Q L + +++ L E + P + E WF LS R
Sbjct: 36 QLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANS---------LEPEPWFFKNLS--RK 84
Query: 514 EAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR-----VNHCRIRSKPESGQFYL 568
+AE L + G+FL+RESE+ G +SLS + V H +IR ++G FY+
Sbjct: 85 DAERQLLAPGNT-HGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR-NLDNGGFYI 142
Query: 569 VEKSYFDSLYSLISHYRTN 587
+ F L+ L+ HY
Sbjct: 143 SPRITFPGLHELVRHYTNA 161
Score = 75.5 bits (185), Expect = 6e-16
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 625 DLLRRVPSDGA-FLVRPSENDNSSYEP---VPQPNQHEDKEWYHPTATRSQAEDLLR-RV 679
+ LR + G + + + P V + N E + W+ +R AE L
Sbjct: 35 EQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPG 94
Query: 680 PSDGAFLVRPSENDNSSYVISFRAEDK-----IKHCRIRV--EGRLYTIGTTQFESLVEL 732
+ G+FL+R SE+ S+ +S R D+ +KH +IR G Y F L EL
Sbjct: 95 NTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHEL 154
Query: 733 ISYYERHPLYKKIELWYPVS 752
+ +Y L P
Sbjct: 155 VRHYTNASDGLCTRLSRPCQ 174
Score = 45.1 bits (106), Expect = 2e-05
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 773 GYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHW 831
G +P + V AL+ Y+ +D +L F K + + G WW+ + +
Sbjct: 1 GGSNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGF 59
Query: 832 FPSNYVAEIEPQHN 845
P N+VA+
Sbjct: 60 IPFNFVAKANSLEP 73
Score = 44.3 bits (104), Expect = 3e-05
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 426 KDEGKLAEDKIKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
+D + + +KH +IR G Y F L EL+ +Y L P
Sbjct: 117 RDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQ 174
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 72.4 bits (178), Expect = 5e-16
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 785 ITVKALYDY--QARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
+ KA+ A + L+ I+ G W G+ G++ FP +V +P
Sbjct: 2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRK-GLFPFTHVKIFDP 60
Query: 843 QHNRED 848
Q+ E+
Sbjct: 61 QNPDEN 66
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 71.8 bits (177), Expect = 6e-16
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAE 839
V+AL+D+ ++++L F K I+ + E WW + + P YV +
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 72.4 bits (178), Expect = 7e-16
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 768 VSGTPGYMDPASF-TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGG 826
SG+ G + P V ALYDYQ + EL+ ++ + +E WWR
Sbjct: 2 SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRN 61
Query: 827 KRMHWFPSNYVAEIEPQ 843
+ PS+Y+ E P
Sbjct: 62 GHEGYVPSSYLVEKSPN 78
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 71.5 bits (176), Expect = 8e-16
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNY 836
+ A+ D+ A+ +L+F K I+ + + GWW P Y
Sbjct: 3 ESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTY 62
Query: 837 VAEIE 841
+
Sbjct: 63 LEPYS 67
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 71.6 bits (176), Expect = 8e-16
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 785 ITVKALYDY--QARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
I + + A + L+ ++ G W G+ GKR FP +V ++
Sbjct: 7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKR-GHFPFTHVRLLDQ 65
Query: 843 Q 843
Q
Sbjct: 66 Q 66
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 72.5 bits (178), Expect = 9e-16
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK- 827
SG+ G P A Y ++ + ELSF K I + + W+ G G
Sbjct: 3 SGSSG-KPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTG 61
Query: 828 RMHWFPSNYVAEIEP 842
R FP++YV
Sbjct: 62 RQGIFPASYVQVSRE 76
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 70.7 bits (174), Expect = 1e-15
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 786 TVKALYDYQARND-DELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAE 839
+A YD+ EL K +I GW G G + W P+ Y+
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 72.2 bits (177), Expect = 1e-15
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARN--------DDELSFPKHAIISNVTRAEG-GW 819
S DP + + AL+DY ++EL F + II + G+
Sbjct: 2 SSGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGF 61
Query: 820 WRGDYGGKRMHWFPSNYVAEIEP 842
+RG+ + P N V+EI+
Sbjct: 62 YRGETCARL-GLIPCNMVSEIQA 83
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 71.2 bits (175), Expect = 1e-15
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 786 TVKALYDYQAR-NDDELSFPKHAIISNVTRAEGGWWRGDY--GGKRMHWFPSNYVAEIEP 842
+A YD+ + EL K I+ GW G K W P+ Y+ +
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEG-WVPTAYMTPYKD 62
Query: 843 QHN 845
N
Sbjct: 63 TRN 65
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 72.9 bits (178), Expect = 2e-15
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLG---DGTFLVRESETFIGDYSLSFWWQ--GRVNHC 555
F E E L + S G DG + +R S T G L W + +V +
Sbjct: 17 NSVFVNTTE--SCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKV-LVVWDETSNKVRNY 73
Query: 556 RIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQ 607
RI K +FYL + F S+ S++ HY T+ L S + L+ L+ P +
Sbjct: 74 RIFEK--DSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLL-LRHPYGYTSG 122
Score = 62.1 bits (150), Expect = 1e-11
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 641 SENDNSSYEPVPQPNQHEDKEWYHPTATRSQAEDLL-----RRVPSDGAFLVRPSENDNS 695
S + YE VP PN + T + E L R P DG + +R S +
Sbjct: 3 SGSSGEDYEKVPLPN-----SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSG 57
Query: 696 SYVISF-RAEDKIKHCRI-RVEGRLYTIGTTQFESLVELISYYERHPL 741
++ + +K+++ RI + + Y G F S+ ++ +Y H L
Sbjct: 58 KVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVL 105
Score = 37.4 bits (86), Expect = 0.004
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 434 DKIKHCRI-RVEGRLYTIGTTQFESLVELISYYERHPL 470
+K+++ RI + + Y G F S+ ++ +Y H L
Sbjct: 68 NKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVL 105
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 71.2 bits (175), Expect = 2e-15
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEPQ 843
ALYD++ ND+EL + I+ + GW + G + P +V+ I+P+
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE 65
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 70.9 bits (174), Expect = 2e-15
Identities = 20/70 (28%), Positives = 28/70 (40%)
Query: 770 GTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRM 829
TP + P V ALYDYQ + EL+ + +E WWR
Sbjct: 6 PTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHE 65
Query: 830 HWFPSNYVAE 839
+ PS+Y+ E
Sbjct: 66 GYAPSSYLVE 75
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 70.3 bits (173), Expect = 2e-15
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEP 842
V A+YD+QA +L + + + + WWR + PSNYV +
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 70.4 bits (173), Expect = 2e-15
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG-GWWRGDYGGKRMHWFPSN 835
+ P+ A Y++ + +L F K +++ V + W++ R P+N
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 836 YVAEIE 841
YV + E
Sbjct: 64 YVQKRE 69
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 71.7 bits (175), Expect = 3e-15
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 762 EPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAII-----SNVTRAE 816
+ V G+ V+A +DY A + DEL ++ N +
Sbjct: 22 ATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQD 81
Query: 817 GGWWRGDYGGK---------RMHWFPSNYVAEIE 841
GW G FP N+ ++
Sbjct: 82 EGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ 115
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 70.7 bits (173), Expect = 3e-15
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 782 PASITVKALYDYQ-ARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK-----RMHWFPSN 835
S+ V+AL D+ + L+ +I+ + + G W+G R+ +FP
Sbjct: 16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPG 75
Query: 836 YVAEIEPQ 843
V + +
Sbjct: 76 IVEVVSKR 83
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 71.3 bits (175), Expect = 3e-15
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSN 835
P T ALYDY+AR ++LSF K + EG WW + + PSN
Sbjct: 20 PTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSN 79
Query: 836 YVAEIE 841
YV +
Sbjct: 80 YVVPAD 85
Score = 29.0 bits (65), Expect = 2.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 609 EDKEWYHPTATRSQAEDLL 627
+ +EWY R AE
Sbjct: 88 QAEEWYFGKMGRKDAESGP 106
Score = 29.0 bits (65), Expect = 2.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 658 EDKEWYHPTATRSQAEDLL 676
+ +EWY R AE
Sbjct: 88 QAEEWYFGKMGRKDAESGP 106
Score = 28.2 bits (63), Expect = 4.0
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 501 EKWFHGRLSGGRAEAEDLL 519
E+W+ G++ R +AE
Sbjct: 90 EEWYFGKMG--RKDAESGP 106
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 69.3 bits (170), Expect = 5e-15
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH-------WFPSNYVAE 839
V ALYDYQ ++ E++ K I++ + WW+ + + P+ YV +
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63
Query: 840 IE 841
++
Sbjct: 64 LD 65
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 69.2 bits (170), Expect = 6e-15
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAE--GGWWRGDYGGKRMHWFPSNYVA 838
+ V+ LY + + ++EL+F K + + + E WW+ ++ P NYV
Sbjct: 3 SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 62
Query: 839 EIE 841
+
Sbjct: 63 VLS 65
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 68.4 bits (168), Expect = 8e-15
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
ALYD++ ND+EL + I+ + GW + G + P +V+ I+
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 68.0 bits (167), Expect = 1e-14
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH-----WFPSNYVAEI 840
T +A++ + R++DEL + +AE W+ M FP+ Y E+
Sbjct: 5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYE----AYNMRTGARGVFPAYYAIEV 60
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 68.0 bits (167), Expect = 1e-14
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
VK LYD+ ARN +ELS K ++ + W G + + P N + E
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSG-QAGYVPCNILGEA 62
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 68.5 bits (168), Expect = 2e-14
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG-GWWRGDYGGKRMHWFPSN 835
+ +T K +Y Y+A DEL+ +H ++ + + W + ++ + P
Sbjct: 6 SGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEK 65
Query: 836 YVAEIEPQ 843
Y+
Sbjct: 66 YLQFPTSS 73
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 68.6 bits (168), Expect = 2e-14
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 784 SITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIEP 842
I V ALYDY + + D+LSF K + V G WW+ ++ + PSNYVA ++
Sbjct: 3 DIIVVALYDYVSWSPDDLSFQKGDQM-VVLEESGEWWKARSLATRKEGYIPSNYVARVDS 61
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 71.2 bits (174), Expect = 3e-14
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 776 DPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSN 835
+ A A+ Y A DE+S + + + + GWW +FPS
Sbjct: 73 EDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT-GYFPSM 131
Query: 836 YVAEIEP 842
Y+ +
Sbjct: 132 YLQKSGQ 138
Score = 70.8 bits (173), Expect = 4e-14
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHN 845
T +A+ DY+ + E++ ++ V ++E GWW KR W P++++ ++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR-GWIPASFLEPLDSPDE 71
Query: 846 REDSSR 851
ED
Sbjct: 72 TEDPEP 77
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 66.9 bits (164), Expect = 3e-14
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEIE 841
V ALY Y + D+LSF K + V G WW+ K+ + PSNYVA++
Sbjct: 9 IVVALYPYDGIHPDDLSFKKGEKM-KVLEEHGEWWKAKSLLTKKEGFIPSNYVAKLN 64
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 66.7 bits (163), Expect = 7e-14
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSN 835
P S + L DY + + F + + V EGGWW+ R + P
Sbjct: 10 PNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKL-RVISDEGGWWKAISLSTGRESYIPGI 68
Query: 836 YVAEIE 841
VA +
Sbjct: 69 CVARVS 74
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 66.2 bits (162), Expect = 7e-14
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH-----WFPSNYVAEI 840
T +A++ + R++DEL + +AE W+ M FP+ Y E+
Sbjct: 8 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYE----AYNMRTGARGVFPAYYAIEV 63
Query: 841 EPQ 843
+
Sbjct: 64 TKE 66
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 66.2 bits (162), Expect = 8e-14
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 787 VKALYDYQA-RNDDELSFPKHAIISNVT-RAEGGWWRG--DYGGKRMHWFPSNYVAEIE 841
VK ++ + A N LSF + +++ + + GW G D R WFPS+Y +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKAR-GWFPSSYTKLLS 67
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 65.8 bits (161), Expect = 9e-14
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 787 VKALYDYQA-RNDDELSFPKHAIISNVTR-AEGGWWRGD-YGGKRMHWFPSNYVAEIE 841
VK ++ + A N LSF + +I+ + + GW G+ K WFPS+Y +E
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 66.0 bits (161), Expect = 1e-13
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 757 QRMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAE 816
+R P+ + S G + + V A +DY A+ D EL K+ + +
Sbjct: 4 ERPPPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERL-WLLDDS 62
Query: 817 GGWWRGDYGGKRMHWFPSNYVAE 839
WWR R + PSNYV
Sbjct: 63 KTWWRVRNAANRTGYVPSNYVER 85
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 65.3 bits (160), Expect = 1e-13
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTR-AEGGWWRGDYGGKRMHWFPSNYVAEIE 841
ALYD+ A D+ LS K + + G W + W PS Y+ +
Sbjct: 7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSAYITPVN 62
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 65.4 bits (160), Expect = 1e-13
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAE-GGWWRG-DYGGKRMHWFPSNYVA 838
+ + YD+ A + DEL+ + + + WW + P+ ++
Sbjct: 3 SKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
Query: 839 EIEPQ 843
+ +
Sbjct: 63 PVRDK 67
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 65.3 bits (160), Expect = 1e-13
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
++ LY+++ARN EL+ + + + ++ W + G R + PSN + +
Sbjct: 9 KMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAG-RSGYIPSNILEPL 62
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 65.1 bits (159), Expect = 2e-13
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHNRE 847
L Y A E++ K I++ + WW+ + ++ + P+ YV +++ +E
Sbjct: 4 PPLPPYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEVNDRQ-GFVPAAYVKKLDSGTGKE 61
Query: 848 D 848
Sbjct: 62 L 62
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 64.3 bits (157), Expect = 3e-13
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 772 PGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGD 823
Y+ V ALYDYQ ++ E++ K I++ + WW+ +
Sbjct: 9 AAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 64.7 bits (158), Expect = 3e-13
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 781 TPASITVKALYDYQARN-------DDELSFPKHAIISNVTRA-EGGWWRGDYGGKRMHWF 832
+ + A DY + L+ ++ + G++ G+ GG R
Sbjct: 4 GSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHR-GLV 62
Query: 833 PSNYVAEIEPQ 843
P++ + +
Sbjct: 63 PAHLLDHMSLH 73
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 64.2 bits (157), Expect = 4e-13
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG-GWWRGDYGGKRMHWFPSNY 836
S + A+Y ++ ++ +S + +S + +G GW R + P++Y
Sbjct: 1 GSSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSY 60
Query: 837 VAEIE 841
+
Sbjct: 61 LRVTS 65
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 63.5 bits (155), Expect = 5e-13
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 778 ASFTPASITVKALYDYQA-RNDDELSFPKHAIIS-NVTRAEGGWWRGD-YGGKRMHWFPS 834
+ VKA++ + A N LSF + +I+ V A GW G+ K WFP
Sbjct: 1 GPLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPF 60
Query: 835 NYVAEIE 841
+Y ++
Sbjct: 61 SYTRVLD 67
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 65.3 bits (159), Expect = 6e-13
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 783 ASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH--WFPSNYVAEI 840
A + LY+++A DDEL +S + W+ + P +YV I
Sbjct: 2 APLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
Query: 841 EPQHNREDSS 850
+ + +S
Sbjct: 62 DLMDPAKYAS 71
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 63.4 bits (155), Expect = 6e-13
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQH 844
+ V A +DY A+ D EL K+ + + WWR R + PSNYV H
Sbjct: 5 VIVIAKWDYTAQQDQELDIKKNERL-WLLDDSKTWWRVRNAANRTGYVPSNYVERKLEHH 63
Query: 845 N 845
+
Sbjct: 64 H 64
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 64.1 bits (156), Expect = 6e-13
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 778 ASFTPASIT-VKALYDYQARNDD-ELSFPKHAII-----SNVTRAEGGWWRGDYGGKRMH 830
P+ + +ALYD+ N + E++ K ++ + + WW+ +
Sbjct: 7 EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66
Query: 831 WFPSNYVAEIEPQHNREDSS 850
+ P NY+ I+ + E
Sbjct: 67 YIPYNYIEIIKRRKKIEHVD 86
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 63.1 bits (154), Expect = 7e-13
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAE 839
V AL+ Y+ +D +L F K + + G WW+ + + P N+VA+
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQL-RILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 63.1 bits (154), Expect = 7e-13
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ A V YD+QARN ELS + ++ V WW+ + + P N +
Sbjct: 5 SGALKWVLCNYDFQARNSSELSVKQRDVLE-VLDDSRKWWKVRDPAGQEGYVPYNILTPY 63
Query: 841 EPQH 844
Sbjct: 64 PAAA 67
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 62.9 bits (154), Expect = 8e-13
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEG-GWWRG-DYGGKRMHWFPSNYVAEI 840
YD+ A + DEL+ + + + WW + P+ ++ +
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 63.2 bits (154), Expect = 1e-12
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG-GWWRGDYGGK 827
SG+ G M + P + ++ EL+F K +++ + E W+R +
Sbjct: 3 SGSSGRMPTRRWAPGT-QCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTS 61
Query: 828 RMH-WFPSNYVAEIEP 842
+ + E
Sbjct: 62 GQEGLLAAGALRERSG 77
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal
transduction protein, hydrolase; HET: I3P; 1.90A {Rattus
norvegicus} SCOP: b.55.1.1
Length = 131
Score = 64.5 bits (157), Expect = 1e-12
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 18 SDEQTPCAIAKDEVDMREVKEVRVGKCFKDFDRWPEESGRVDAARCFIVLYGSEFKLKTL 77
+ + + +++EVR+G + +++ + RCF +++ + TL
Sbjct: 45 ESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDI---PEDRCFSIVFKDQRN--TL 99
Query: 78 SIAAFSEKECGLWVTGLRYLV 98
+ A S + WV GLR ++
Sbjct: 100 DLIAPSPADAQHWVQGLRKII 120
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 63.3 bits (154), Expect = 1e-12
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 770 GTPGYMDPASFTPASI-TVKALYDYQARNDDELSFPKHAIIS----NVTRAEGGWWRG-D 823
G+ G A+ T++ +Y Y +NDDEL I T GW G
Sbjct: 1 GSSGSSGSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTS 60
Query: 824 YGGKRMHWFPSNYVAEIE 841
P NY+ + +
Sbjct: 61 LTTGCSGLLPENYITKAD 78
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 63.4 bits (154), Expect = 1e-12
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 7/85 (8%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQAR------NDDELSFPKHAIISNVTRA-EGGWWR 821
S ++ A Y Y + EL + E G++
Sbjct: 2 SSGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYE 61
Query: 822 GDYGGKRMHWFPSNYVAEIEPQHNR 846
G+ + PSN+V ++ +R
Sbjct: 62 GELLDGQRGLVPSNFVDFVQDNESR 86
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 62.3 bits (152), Expect = 2e-12
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 778 ASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYV 837
S + V A +DY A+ + EL K+ + + WWR + + PSNYV
Sbjct: 1 GSTMAEEVVVVAKFDYVAQQEQELDIKKNERL-WLLDDSKSWWRVRNSMNKTGFVPSNYV 59
Query: 838 AEIEP 842
Sbjct: 60 ERKNS 64
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 62.7 bits (153), Expect = 2e-12
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 778 ASFTPASITVKALYDYQA-RNDDELSFPKHAIISNVTRAEG-GWWRGDYGGKRMHWFPSN 835
+ + + + +YD+ A ++EL+ + II+ G GW G P++
Sbjct: 3 SGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTD 62
Query: 836 YVAEIEP 842
YV +
Sbjct: 63 YVEILPN 69
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 62.9 bits (153), Expect = 3e-12
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH--WFPSNYVA 838
S+ LYD++A DEL+ + W+ G+ P +V+
Sbjct: 2 PLGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61
Query: 839 EIEPQHNREDSS 850
I+ +
Sbjct: 62 IIDIATGYATGN 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 3e-12
Identities = 90/642 (14%), Positives = 186/642 (28%), Gaps = 178/642 (27%)
Query: 152 HFQEVDTRKTNELAFDEFSILYNRIM--FDEQMFTDSYSHYSSD--GQTVTASELTNFLI 207
H +D +T E + Y I+ F++ + D ++ E+ + +
Sbjct: 3 HHHHMDF-ETGEHQYQ-----YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII- 55
Query: 208 REQNETNVNEREVSRHMRDYLQDEQRNVQEPYFTFMEFIDFLFSKQNELWDQQYDAIHQD 267
+ + + L +Q + F+E + + N + I +
Sbjct: 56 ---MSKDAVSG--TLRLFWTLLSKQEEM---VQKFVEEVL----RINYKF--LMSPIKTE 101
Query: 268 MTKPLSHY--FINSSHNTYLTGDQFSSESSC-EAYVRCLRQGCRCIELDCWDGPDGTPIV 324
+P +I Y F+ + LRQ EL ++
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELR-----PAKNVL 154
Query: 325 YHG------HTLTTKIKFKDVVKTIRDHAFETSKYPVI--LSIEDNCSLPQQRVMAQIML 376
G + + + + I L++ NC+ P+ +L
Sbjct: 155 IDGVLGSGKTWV--------ALDVCLSYKVQCKMDFKIFWLNL-KNCNSPET------VL 199
Query: 377 DIFKDMLLIHPVEKNETVLPSP--------HQLRGKI--LLKHKKLPEGSDEQTPCAIAK 426
++ + L++ ++ N T H ++ ++ LLK K C +
Sbjct: 200 EMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-------CLLVL 250
Query: 427 DEGKLAEDK--IK----HCRIRVEGRLYTIGTTQFESLVE-LISYYERHPLYKKIE--LW 477
++ C+I + TT+F+ + + L + H L
Sbjct: 251 LN---VQNAKAWNAFNLSCKILL--------TTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 478 YPVSEDLIQRMGLGVPNDEL-------H------FGEK----------WFH---GRLSGG 511
+ L+ + L +L + E W H +L+
Sbjct: 300 PDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 512 RA------EAEDLLRRYSHLGDGTFLVRESETFIGDYSLS-FWWQGR-------VNHCRI 557
E + + + L V I LS W+ VN
Sbjct: 359 IESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 558 RSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEF------LIT---LQEPVPQPN-- 606
S LVEK +S S+ S Y ++ + ++ + + +
Sbjct: 414 YS--------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 607 -QHEDKEW-----YH-PTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYE-PVPQPNQHE 658
+ D+ + +H + L R V D FL + +D++++ N +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 659 DKEWY-------HPTATRSQAEDLLRRVPSDGAFLVRPSEND 693
++Y P R +L +P L+ D
Sbjct: 526 QLKFYKPYICDNDPKYER-LVNAILDFLPKIEENLICSKYTD 566
Score = 39.5 bits (91), Expect = 0.006
Identities = 43/339 (12%), Positives = 93/339 (27%), Gaps = 104/339 (30%)
Query: 1 MKLRGKIL-LKHKKLPEGSDEQTPCAIAKDEVDMREVKEVRVGKCFKDF-DRWPEESGRV 58
L K L + + LP P ++ + + + +D W + V
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLS-----I-------IAESIRDGLATW-DNWKHV 350
Query: 59 DAAR-------CFIVLYGSEFK--LKTLSIAAFSEKE-------CGLWVTGLRYLVPDTL 102
+ + VL +E++ LS+ F +W ++ V +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 103 R--APYPLNVERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRK 160
Y L VE+ ++ S+ ++ + N + +H+ T
Sbjct: 409 NKLHKYSL-VEKQPKESTISIPS-------IYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 161 TNELAFDEFSILYNRIMFDEQMFTDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREV 220
+++L D Y + + +
Sbjct: 461 SDDLIPPY---------------LDQYFY--------------SHI-------------- 477
Query: 221 SRHMRDYLQDEQRNVQEPYFTFMEFIDFLFSKQ-----NELWDQQYDAIH--QDMTKPLS 273
H+++ E+ + F M F+DF F +Q + W+ ++ Q +
Sbjct: 478 GHHLKNIEHPERMTL----FR-MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 274 HYFINSSHNTYLTGD--QFSSESSCEAYVRCLRQGCRCI 310
+ N L F E + +
Sbjct: 533 YICDNDPKYERLVNAILDFL--PKIEE--NLICSKYTDL 567
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 61.7 bits (150), Expect = 3e-12
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 786 TVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG---DYGGKRMHWFPSNYVAEIEP 842
++ DY+ +++ F + + + R GWW D W PSNY+ +
Sbjct: 12 VYVSIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS 70
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 60.3 bits (147), Expect = 6e-12
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 785 ITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWW---RGDYGGKRMHWFPSNYV 837
+ K LY Y ++DDE++ IS V R G W D G+ P+ Y+
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGET-GLVPTTYI 56
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 60.3 bits (147), Expect = 6e-12
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 787 VKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQ 843
K+ YD+ ARN ELS K ++ + WW+ + P+N + +
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLE-ILDDRRQWWKVRNASGDSGFVPNNILDIMRTP 59
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 61.0 bits (148), Expect = 7e-12
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 795 ARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHNREDSS 850
A E++ K I++ + WW+ + ++ + P+ YV +++ +E
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQ-GFVPAAYVKKLDSGTGKELVL 56
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 60.5 bits (147), Expect = 9e-12
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 778 ASFTPASIT-VKALYDYQARNDD-ELSFPKHAII-----SNVTRAEGGWWRGDYGGKRMH 830
P+ + +ALYD+ N + E++ K ++ + + WW+ +
Sbjct: 7 EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66
Query: 831 WFPSNYVAEIEPQ 843
+ P NY+ I+ +
Sbjct: 67 YIPYNYIEIIKRR 79
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase,
phospholipid degradation, virulence factor of human
pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2
PDB: 1aod_A*
Length = 274
Score = 64.6 bits (157), Expect = 2e-11
Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Query: 269 TKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRC--------LRQGCRCIELDCWDGPDG 320
T L+ I +H+T + + + + + + L G R I++ D
Sbjct: 13 TTNLAALSIPGTHDTM-SYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKD---- 67
Query: 321 TPIVYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSI-EDNCSLPQQRVMAQIMLDIF 379
+YHG V++TI + K +I+ + ++ S Q +++I+
Sbjct: 68 NLNIYHGPIFLN-ASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIY 126
Query: 380 KDMLLIHPVEKNETVLPSPHQLRGKILL 407
KD P +P+ +RGKILL
Sbjct: 127 KDYFYTTPRTDTSNKIPTLKDVRGKILL 154
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 59.0 bits (143), Expect = 2e-11
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 787 VKALYDYQARND-DELSFPKHAIISNVTRAEGGWWRG--DYGGKRMHWFPSNYVAEI 840
V+A+ Y D DE+SF K + E GW ++ + V E+
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQ-GLIVEDLVEEV 63
>3ea1_A 1-phosphatidylinositol phosphodiesterase;
phosphatidylinositol-specific phospholipase C, PI-PLC,
dimer, interfacially impaired; 1.75A {Bacillus
thuringiensis} PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A*
1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Length = 298
Score = 63.6 bits (154), Expect = 5e-11
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 269 TKPLSHYFINSSHNTY---LTGDQFSSESSCEAY--VRCLRQGCRCIELDCWDGPDGTPI 323
PL+ I +H++ L + Y + G R ++ D T +
Sbjct: 20 NIPLARISIPGTHDSGTFKLQNPIKQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIV 79
Query: 324 VYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNCSLPQQRVMAQIMLDIFKDML 383
++HG + + + + + +I+S++ + F+
Sbjct: 80 LHHGPLY-LYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKG--AEGSFSSTFEKNY 136
Query: 384 LIHPVEKNETVLPSPHQLRGKILL 407
+ P+ RGKI+L
Sbjct: 137 FVDPIFLKTEGNIKLGDARGKIVL 160
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC,
Ca2+-dependent, catalytic TIM barrel, disulfide-LINK
loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB:
3h4w_A
Length = 339
Score = 64.1 bits (155), Expect = 5e-11
Identities = 30/180 (16%), Positives = 44/180 (24%), Gaps = 42/180 (23%)
Query: 263 AIHQDMTKPLSHYFINSSHNTYLTGDQFSSESSCEAYVRCLRQGCRCIELDCWDGPDGTP 322
+ + HN Y + + L G +ELD W G
Sbjct: 19 SHMEPAATTYGTSTSVGVHNAY-------EKEKYRYFADALDSGAALLELDLWSNALGRS 71
Query: 323 I-VYHGHTL------------------TTKIKFKDVVKTIRD-HAFETSKYPVILSIEDN 362
V H + L + F + +R H P++L IE
Sbjct: 72 WRVSHSNPLGNNSNCEGAANASELRTKSRDQDFAGCLSDMRAWHDAHPGHRPILLKIEMK 131
Query: 363 CSLPQQRVMAQIMLD-----IFKDMLLI------HPVEKNETVL----PSPHQLRGKILL 407
+ D D + +E V PS L GK L
Sbjct: 132 DGFNAKGGRGPAEFDALIRQKLGDAVYGPGDLTGGHATADEAVRAGGWPSRADLAGKFLF 191
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 58.2 bits (141), Expect = 5e-11
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 787 VKALYDYQARNDD-ELSFPKHAII-----SNVTRAEGGWWRGDYGGKRMHWFPSNYVAEI 840
+ALYD+ N + E++ K ++ + + WW+ + + P NY+ I
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 69
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 59.3 bits (143), Expect = 6e-11
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 776 DPASFTPASITVKALYDYQARNDDELSFPKHAII---SNVTRAEGGWWRGDYGGK----- 827
D P S+ AL DY A + L+ + ++ S + +W G G
Sbjct: 15 DQECSHPISM-AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDL 73
Query: 828 --RMHWFPSNYVAEIEPQHNRE 847
R+ +FPS+ V E + +
Sbjct: 74 AARLGYFPSSIVREDQTLKPGK 95
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 64.0 bits (154), Expect = 9e-11
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRA-EGGWWRGDYGGK 827
+G D + + + V+ALYDY+ + DELSF ++ + E GW +G
Sbjct: 413 NGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNG 472
Query: 828 RMHWFPSNYVAEIE 841
++ +P+NYV I+
Sbjct: 473 QVGLYPANYVEAIQ 486
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 62.7 bits (151), Expect = 1e-10
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 1/145 (0%)
Query: 706 KIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLEPDD 765
+ + E R+ + L + + SE + Q +
Sbjct: 96 YVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPR 155
Query: 766 NTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYG 825
+ + A+ +AL+D+ + EL+F +I ++R W G
Sbjct: 156 TRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR 215
Query: 826 GKRMHWFPSNYVAEIEPQHNREDSS 850
G FP ++V ++ +D +
Sbjct: 216 GAT-GIFPLSFVKILKDFPEEDDPT 239
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 56.6 bits (136), Expect = 6e-10
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 777 PASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMH--WFPS 834
S A+Y++Q +LS ++ + G W+RG +M FP
Sbjct: 52 SGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVV-RIQETCGDWYRGYLIKHKMLQGIFPK 110
Query: 835 NYV 837
+++
Sbjct: 111 SFI 113
>3v1h_A 1-phosphatidylinositol phosphodiesterase; PI-cation, TIM barrel,
phospholipase, lyase; HET: INS; 1.90A {Staphylococcus
aureus subsp} PDB: 3v18_A 3v16_A*
Length = 306
Score = 60.1 bits (145), Expect = 8e-10
Identities = 20/147 (13%), Positives = 52/147 (35%), Gaps = 9/147 (6%)
Query: 269 TKPLSHYFINSSHNTYLTGDQFSSESS-----CEAYVRCLRQGCRCIELDCWDGPDGTPI 323
K L+ I SH++ + +S + Y+ ++ G R ++ D
Sbjct: 16 GKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMIS 75
Query: 324 VYHGHTLTTKIKFKDVVKTIRDHAFETSKYPVILSIEDNCSLPQQ--RVMAQIMLDIFKD 381
V+HG + + + + +++S++ + + + +I + + +
Sbjct: 76 VHHGMV-YLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYN 134
Query: 382 MLLIHP-VEKNETVLPSPHQLRGKILL 407
P+ + +GKI+L
Sbjct: 135 NPQYQNLFYTGSNANPTLKETKGKIVL 161
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP:
b.55.1.1
Length = 150
Score = 55.8 bits (134), Expect = 2e-09
Identities = 22/126 (17%), Positives = 32/126 (25%), Gaps = 35/126 (27%)
Query: 491 GVPNDELHFG-EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ 549
+ ELH E F G + L S L GD
Sbjct: 50 ASGSTELHSSLEVLFQGPNPAILEPEREHLDENSPL--------------GDLLRGVL-- 93
Query: 550 GRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHE 609
V C+I +PE + L+ + S + QE E
Sbjct: 94 -DVPACQIAIRPEGKN---------NRLFVFSISMPSVAQWSLDVAADSQE--------E 135
Query: 610 DKEWYH 615
++W
Sbjct: 136 LQDWVK 141
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 53.4 bits (128), Expect = 4e-09
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 16/78 (20%)
Query: 781 TPASITVKALYDYQARNDDELSFPKHAIIS---------------NVTRAEGGWWRGDYG 825
P +ALY ++ ++L ++ GW G
Sbjct: 8 GPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNE 67
Query: 826 GKRMH-WFPSNYVAEIEP 842
R FP YV + P
Sbjct: 68 RTRQRGDFPGTYVEFLGP 85
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 52.3 bits (126), Expect = 4e-09
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 798 DDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQHNRED 848
E++ K I++ + WW+ + ++ + P+ YV +++ +E
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQ-GFVPAAYVKKLDSGTGKEL 52
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 54.7 bits (130), Expect = 2e-08
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 750 PVSEDLIQRMGLEPDDNTVSGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAII 809
++ + TV G G V+A +DY A + DEL ++
Sbjct: 108 SSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 167
Query: 810 -----SNVTRAEGGWWRGDYGG---------KRMHWFPSNYVAEI 840
N + GW G K FP N+ +
Sbjct: 168 LVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV 212
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 56.5 bits (136), Expect = 2e-08
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 782 PASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIE 841
+ + +AL+D+ +D EL F +I + WW G WFP+++V
Sbjct: 28 GSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEG-WFPASFVRLRV 86
Query: 842 PQHNREDSS 850
Q D
Sbjct: 87 NQDEPADDD 95
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 55.5 bits (134), Expect = 2e-08
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 784 SITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGKRMHWFPSNYVAEIEPQ 843
S V +YDY A+NDDEL+F K II+ + + + WW+G+ G ++ FPSNYV
Sbjct: 2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSG-QVGLFPSNYVKLTTDM 60
Query: 844 HNREDSSR 851
+
Sbjct: 61 DPSQQWCS 68
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 52.6 bits (126), Expect = 5e-08
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 664 HPT---ATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYT 720
HP +++E+ LR S FL+R ++ A D H +I YT
Sbjct: 14 HPLFKNFNVTESENYLRS--STDDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYT 71
Query: 721 IGTTQFESLVELISYYERHPLYKKIE 746
FE + E+IS Y P+ + ++
Sbjct: 72 CSNKHFEDIDEVISVYV-RPILRNLK 96
Score = 41.4 bits (97), Expect = 3e-04
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 32/155 (20%)
Query: 430 KLAEDKIKHCRIRVEGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMG 489
K A D H +I YT FE + E+IS Y P+ + ++
Sbjct: 52 KFASDVFVHMKIEEHSEHYTCSNKHFEDIDEVISVYV-RPILRNLK-------------- 96
Query: 490 LGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQ 549
+ K+F+ +AE LL + + S + G + ++
Sbjct: 97 ------SIKAHAKYFN-----SPEDAEKLLSSF-DGSKVVYAFYFSRKYPGKLTFAY-NN 143
Query: 550 GRVNHCRIRSKPESGQFYLVEKSYFDSLYSLISHY 584
G + I + S F + S +++
Sbjct: 144 GSILEEYIGV-SDM---LTYNNSTFKDIDSFVAYR 174
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 50.9 bits (121), Expect = 2e-07
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 769 SGTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEGGWWRGDYGGK- 827
SG+ G M P A+Y++Q +LS ++ + G W+RG
Sbjct: 3 SGSSG-MAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVV-RIQETCGDWYRGYLIKHK 60
Query: 828 -RMHWFPSNYVAEIEP 842
FP +++ E
Sbjct: 61 MLQGIFPKSFIHIKEV 76
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 51.0 bits (122), Expect = 1e-06
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 492 VPNDELHFGEKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGR 551
V N ++G + FHG +S R A+ LL +G++L+RES+ G Y+L+ + +
Sbjct: 43 VENRPKYYGRE-FHGMIS--REAADQLLIV----AEGSYLIRESQRQPGTYTLALRFGSQ 95
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLIS 582
+ R+ G+ ++ EK F+S++ L++
Sbjct: 96 TRNFRLYYD---GKHFVGEKR-FESIHDLVT 122
Score = 50.3 bits (120), Expect = 2e-06
Identities = 18/72 (25%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 663 YHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGRLYTIG 722
+H +R A+ LL ++G++L+R S+ +Y ++ R + ++ R+ +G+ + +G
Sbjct: 54 FHGMISREAADQLLIV--AEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHF-VG 110
Query: 723 TTQFESLVELIS 734
+FES+ +L++
Sbjct: 111 EKRFESIHDLVT 122
Score = 32.9 bits (75), Expect = 0.41
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 596 ITLQEPVPQPNQHEDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSY 648
IT V ++ +E +H +R A+ LL ++G++L+R S+ +Y
Sbjct: 37 ITCTCEVENRPKYYGRE-FHGMISREAADQLLIV--AEGSYLIRESQRQPGTY 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-06
Identities = 70/389 (17%), Positives = 118/389 (30%), Gaps = 126/389 (32%)
Query: 94 LRYLVPDTLRAP--YP--LNVERWLRK------HFYSLEGPRETVNLKDIKTFLP----- 138
L L+ TL A + LN+ WL Y L P ++ I +
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP---ISCPLI--GVIQLAHY 249
Query: 139 RVNCK---MSTNKLREHFQEVDTR-------------KTNELAFDEFSILYNRIMFDEQM 182
V K + +LR + + + E +F ++F
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-SFFVSVRKAITVLF---- 304
Query: 183 F-----TDSYSHYSSDGQTVTASELTNFLIREQNETNVNEREVSRHM---RDYLQDEQRN 234
F ++Y + S + S E NE V M + Q++
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSL-------ENNEG------VPSPMLSISNLTQEQ--- 348
Query: 235 VQEPYFTFMEFIDFLFSKQNELWDQQYDAIHQDMTKPLSHYFINSSHNTYLTGDQFSSES 294
VQ ++++ K N H K + +N + N ++G
Sbjct: 349 VQ-------DYVN----KTNS---------HLPAGKQVEISLVNGAKNLVVSGPP----Q 384
Query: 295 SCEAYVRCLRQGCRCIELDCWDGPD--------------GTPIVYHGHTLT--TKIKFKD 338
S LR+ LD P +P +H H L + + KD
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP--FHSHLLVPASDLINKD 442
Query: 339 VVKTIRDHAFETS--KYPVILSIEDNCSLPQQRVMAQIMLDIFKDMLLIHPVE-KNETVL 395
+VK + +F + PV D L + + I I D ++ PV+ + T
Sbjct: 443 LVK--NNVSFNAKDIQIPVY-DTFDGSDL--RVLSGSISERIV-DCIIRLPVKWETTTQF 496
Query: 396 PSPHQL---RGKI-----LLKHKKLPEGS 416
+ H L G L K +G+
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNK--DGT 523
Score = 47.4 bits (112), Expect = 2e-05
Identities = 85/565 (15%), Positives = 145/565 (25%), Gaps = 264/565 (46%)
Query: 149 LREHFQEVDTRKTNELAFD-EFSI---LYNRIMFDEQMFTDSYSHYSSDGQT--VTASEL 202
L+E F ++ T A D E + L + + + S S GQ V L
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFL----GYVSSLVEPSKVGQFDQVLNLCL 88
Query: 203 TNF----------------LIREQNETNVNEREVSRHMRDYLQ----------------- 229
T F L++E + T V +E+ +++Y+
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL---IKNYITARIMAKRPFDKKSNSAL 145
Query: 230 -------------------------DEQRNVQEPYFTFME-FIDFLFSKQNELWDQQYDA 263
+E R++ + Y + I F +EL DA
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 264 ---------IHQDMTKP-----------------------LSHYFINSSHNTYLTG---D 288
I + + P L+HY + + + G
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 289 QFSSESSC--------------------EAYVRCLR----QGCRC------------IEL 312
+ + + + G RC I
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 313 DCWDGPDGTPIVYHGHTLTTK-IKFKDVVKTIRDHAFETSKYPVILSIEDNCSLPQQRVM 371
D + +G P L+ + + V + + N LP + +
Sbjct: 326 DSLENNEGVP----SPMLSISNLTQEQVQDYVN---------------KTNSHLPAGKQV 366
Query: 372 AQIML----DIFKDMLLIHPVEKNETVL--PSPHQLRG-KILLKHKKLPEGSDEQT---- 420
I L V+ P P L G + L+ K P G D Q+
Sbjct: 367 E-ISLVNGAKNL--------------VVSGP-PQSLYGLNLTLRKAKAPSGLD-QSRIPF 409
Query: 421 ----------------PC-------AIAKDEGKLAEDKI----KHCRIRV----EGR-LY 448
P A L ++ + K +I V +G L
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 449 TIGTTQFESLVELISYYERHPLYKKIELW-----YPVS-------------EDLIQRM-- 488
+ + E +V+ I R P+ W + + L R
Sbjct: 470 VLSGSISERIVDCII---RLPVK-----WETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 489 GLGV-----------PNDELHFGEK 502
G GV P+D+ +G K
Sbjct: 522 GTGVRVIVAGTLDINPDDD--YGFK 544
Score = 45.4 bits (107), Expect = 8e-05
Identities = 81/469 (17%), Positives = 147/469 (31%), Gaps = 143/469 (30%)
Query: 354 PVIL---SIEDNCSLP-QQRVMAQIMLDIFKDMLLIHPVEK----NETVLPSPHQLRGKI 405
P+ L S+E +P +A + + F +L P E +E +P +L GK
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADDEPT--TPAELVGKF 64
Query: 406 L--LKHKKLPEGSDEQTPC---AIAKDEGK-LAEDKIKHCRIRVEGRLYTIGTTQFESLV 459
L + P + + + E L + I H + +L T
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HA---LAAKLLQENDTTLVKTK 120
Query: 460 ELI-SYYE-----RHPLYKKIE--LWYPVSEDLIQRMGLGVPNDELHFG-----EKWFHG 506
ELI +Y + P KK L+ V E Q + + FG + +F
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--------FGGQGNTDDYF-- 170
Query: 507 RLSGGRAEAEDLLRRYSHLGDGTF---------LVRESETFIGDYSLSF----WWQGRVN 553
E DL + Y L L+R + ++ W +
Sbjct: 171 ------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS- 223
Query: 554 HCRIRSKPESGQFYLVEKSYFDS-----LYSLISHYRTNHLRSQEFLITLQEPVPQPNQH 608
+ P+ YL+ S S + L +HY ++T + P +
Sbjct: 224 -----NTPDKD--YLL--SIPISCPLIGVIQL-AHY----------VVTAKLLGFTPGEL 263
Query: 609 EDKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTAT 668
+ ++ L+ A + +++ S + + +
Sbjct: 264 RS----YLKGATGHSQGLV------TAVAIAETDSWESFFV-----SVRKAITVLFFIGV 308
Query: 669 RSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIRVEGR----LYTIGTT 724
R A+ P+ + S + ED +++ EG L T
Sbjct: 309 RCY-----------EAY---PNTSLPPSIL-----EDSLEN----NEGVPSPMLSISNLT 345
Query: 725 QFESLVELISYYERH-PLYKKIELWYPVSEDLIQRMGLEPDDNTVSGTP 772
Q E + + ++ H P K++E +S L+ G + VSG P
Sbjct: 346 Q-EQVQDYVNKTNSHLPAGKQVE----IS--LVN--G--AKNLVVSGPP 383
Score = 33.5 bits (76), Expect = 0.35
Identities = 100/643 (15%), Positives = 168/643 (26%), Gaps = 257/643 (39%)
Query: 169 FSILYNRIMFDEQMF---TDSYSHYSSDGQTVTASELT-NFLIREQNETNVNEREVSRHM 224
++ + + E + T S+ AS+L F T +
Sbjct: 9 LTLSHGSL---EHVLLVPTASFFI---------ASQLQEQFNKILPEPTEGFAAD----- 51
Query: 225 RDYLQDEQRNVQEPYFTFMEFIDFLFSKQNE----------LWD--QQY----DAIH--- 265
DE E F+ ++ L L + Y D IH
Sbjct: 52 -----DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHALA 105
Query: 266 ----QDMTKPLS-------HYF---------INSSHNTYL-----TGD-----QFSSESS 295
Q+ L +Y + N+ L G+ F + +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 296 CEAYVRCLRQ----------------GCRCIELDCWDGPDGTPIVYHGHTLTTKIKFKDV 339
+ Y LR EL D + G + ++
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNILEWLENPS- 223
Query: 340 VKTIRDHAFETSKYPVILSIEDNCSLPQ----QRVMAQIMLDIFKDMLLIHPVEKNETVL 395
D + S P+ S P Q +A + + +L P E
Sbjct: 224 --NTPDKDYLLS-IPI--------SCPLIGVIQ--LAHYV--VTAKLLGFTPGELRS--- 265
Query: 396 PSPHQLRGKILLKHKKLPEGSDEQTPCAIAK-DEGKLAEDKIKHCRIRVEGRLYTIGTTQ 454
L+G H T AIA+ D + ++ I V L+ IG
Sbjct: 266 ----YLKG--ATGH-----SQGLVTAVAIAETDSWESFFVSVRKA-ITV---LFFIG--- 307
Query: 455 FESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLGVPNDELHFGEKWFHGRLSG-GRA 513
+ Y L + ED ++ GVP+ L +S +
Sbjct: 308 ----------VRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLS---------ISNLTQE 347
Query: 514 EAEDLLRRY-SHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCR---IRSKPESGQFYLV 569
+ +D + + SHL + I SL VN + + P+S
Sbjct: 348 QVQDYVNKTNSHLP------AGKQVEI---SL-------VNGAKNLVVSGPPQS------ 385
Query: 570 EKSYFDSLYSLISHYRTNHLRS---Q--------------EFLITLQEPVPQPNQHEDKE 612
LY L R S Q FL PV P
Sbjct: 386 -------LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-----PVASP------- 426
Query: 613 WYH----PTATRSQAEDLLRR-VPSDGAFLVRPSENDNSSYEPVPQPNQHEDKEWYHPTA 667
+H A+ +DL++ V + + PV Y T
Sbjct: 427 -FHSHLLVPASDLINKDLVKNNVSFNAKDIQ----------IPV-----------YD-TF 463
Query: 668 T----RSQAEDLLRRVPSDGAFLVRP-----SENDNSSYVISF 701
R + + R+ D + P + +++++ F
Sbjct: 464 DGSDLRVLSGSISERI-VD-CIIRLPVKWETTTQFKATHILDF 504
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 47.2 bits (112), Expect = 5e-06
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 664 HPT---ATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFR-AEDKIKHCRIRVE---- 715
HP QAED LR G F++R S + I+++ +D +H I+
Sbjct: 8 HPYYFPFNGKQAEDYLRSKE-RGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKEN 66
Query: 716 ----GRLYTIGTTQFESLVELISYYERHPLYKKIE 746
G++ + ++ L ++I Y + + +
Sbjct: 67 PLALGKVLVVEGQRYHDLDQIIVEYLQ-NKIRLLN 100
Score = 42.6 bits (100), Expect = 2e-04
Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 44/178 (24%)
Query: 430 KLAEDKIKHCRIRVE--------GRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
KL +D +H I+ G++ + ++ L ++I Y + + +
Sbjct: 48 KLDKDLFQHVDIQELEKENPLALGKVLVVEGQRYHDLDQIIVEYLQ-NKIRLLN------ 100
Query: 482 EDLIQRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYS--HLGDGTFLVRESETFI 539
EL EK+ G + E + YS + + +
Sbjct: 101 --------------ELTSNEKFKA----GTKKEVVKFIEDYSKVNPKKSVYYFSLNYENP 142
Query: 540 GDYSLSFW--WQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLIS----HYRTNHLRS 591
G + L F + ++ ++ F+L + ++ L + ++++ R+
Sbjct: 143 GWFYLIFKLNAESKLYIWNVKLTHTG--FFL-VNYNYPTVIQLCNGFKTLLKSSNTRN 197
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 44.2 bits (104), Expect = 8e-06
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAE----GGWWRGDYGGKRMHWFPSNYVAEIEPQ 843
+A ++ A D ++S + ++ + + + W D G + + S+++ P+
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTK-GFVYSSFLKPYNPR 79
Query: 844 HNREDSS 850
+ D+S
Sbjct: 80 RSHSDAS 86
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 43.5 bits (102), Expect = 9e-06
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 776 DPASFTPASITVKALYDYQA------RNDDELSFPKHAIISNVTR--AEGGWWRG-DYGG 826
D ++ +Y L I+ +T+ AE WW G +
Sbjct: 4 DKKRNELGLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVE-LTKAEAEHNWWEGRNTAT 62
Query: 827 KRMHWFPSNYVAE 839
+ WFP N V
Sbjct: 63 NEVGWFPCNRVHP 75
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 41.6 bits (97), Expect = 4e-05
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 18/72 (25%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRA----------------EGGWWRG-DYGGKRMH 830
+ALYDY+ ++++ I++ V + E GW G +
Sbjct: 9 RALYDYKKEREEDIDLHLGDILT-VNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 831 WFPSNYVAEIEP 842
FP YV I
Sbjct: 68 DFPGTYVEYIGR 79
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 40.3 bits (94), Expect = 9e-05
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 786 TVKALYDYQA------RNDDELSFPKHAIISNVTR--AEGGWWRG-DYGGKRMHWFPSNY 836
++ +Y L I+ +T+ AE WW G + + WFP N
Sbjct: 6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVE-LTKAEAEHNWWEGRNTATNEVGWFPCNR 64
Query: 837 VA 838
V
Sbjct: 65 VH 66
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 38.8 bits (89), Expect = 0.007
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 501 EKWFHGRLSGGRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHCRIRS- 559
E +G + R E D L+ GTF++R SE G + +++ +
Sbjct: 351 EGIIYGYMG--RQEVNDALQNQDP---GTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 405
Query: 560 KPESGQFYLVEKSYFDSLYSLISHYR 585
+P +K++ D L
Sbjct: 406 QPNDTA--AAKKTFPDFLSEHSQFVN 429
Score = 36.5 bits (83), Expect = 0.038
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 659 DKEWYHPTATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKIKHCRIR 713
+ + R + D L+ G F++R SE + + I++ + +
Sbjct: 350 QEGIIYGYMGRQEVNDALQNQDP-GTFIIRFSERNPGQFGIAYIGVEMPARIKHY 403
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 38.1 bits (89), Expect = 0.009
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 552 VNHCRIRSKPESGQFYLVEKSYFDSLYSLISHYRTNHLRSQEFLITLQEPVPQPNQHE-- 609
+ + E YF+ + H+ ++ + Q + +++E
Sbjct: 1 MGYYHHH-HHHDYDIPTTENLYFNGMGYYHHHHHHDYDIPTTENLYFQGMLAGVSEYELP 59
Query: 610 -DKEW 613
D W
Sbjct: 60 EDPRW 64
Score = 32.0 bits (73), Expect = 0.78
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 8/70 (11%)
Query: 436 IKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVSEDLIQRMGLGVP 493
+ + + + T F + ++ E Y M GV
Sbjct: 1 MGYYHHHHHHDYDIPTTENLYFNGMGYYHHHHHHDYDIPTTENLYFQG------MLAGVS 54
Query: 494 NDELHFGEKW 503
EL +W
Sbjct: 55 EYELPEDPRW 64
Score = 32.0 bits (73), Expect = 0.79
Identities = 6/62 (9%), Positives = 14/62 (22%), Gaps = 3/62 (4%)
Query: 707 IKHCRIRV--EGRLYTIGTTQFESLVELISYYERHPLYKKIELWYP-VSEDLIQRMGLEP 763
+ + + + T F + ++ E Y + L
Sbjct: 1 MGYYHHHHHHDYDIPTTENLYFNGMGYYHHHHHHDYDIPTTENLYFQGMLAGVSEYELPE 60
Query: 764 DD 765
D
Sbjct: 61 DP 62
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 38.3 bits (88), Expect = 0.011
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 788 KALYDYQARNDDELSFPKHAIISNVTRAEGGWWRG-DYGGKRMHWFPSNYVAEI 840
A+Y +Q R DE+ II G+ +G + R +PS V E
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREK 499
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 33.4 bits (76), Expect = 0.043
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 770 GTPGYMDPASFTPASITVKALYDYQARNDDELSFPKHAIISNVTRAEG--GWWR---GDY 824
G+PG +TV L D+ A + ELS + + R GW +
Sbjct: 4 GSPGIPGSTLSGGCELTV-VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTER 62
Query: 825 GGKRMHWFPSNYVAEIEP 842
+ PS+ +
Sbjct: 63 SPPQEGLVPSSTLCISHS 80
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 35.1 bits (81), Expect = 0.045
Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 105 PYPLNVERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKL-----REHFQEVDTR 159
+P + L +F ++ G ++ +++ L + R +D
Sbjct: 26 AFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD 85
Query: 160 KTNELAFDEFSILYNRIMFDEQMFTDSYSHYSSDGQ-TVTASELTNFLIREQNETNVNER 218
+ + F+EF L+ + Q F + +D TV EL L ++ +
Sbjct: 86 MSGTMGFNEFKELWAVLNGWRQHFI----SFDTDRSGTVDPQELQKAL--TTMGFRLSPQ 139
Query: 219 EVSRHMRDYLQDEQRNVQEPYFTFMEFIDFLFSKQN 254
V+ + Y + TF ++I +
Sbjct: 140 AVNSIAKRY--STNGKI-----TFDDYIACCVKLRA 168
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 35.2 bits (80), Expect = 0.069
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 14/70 (20%)
Query: 784 SITVKALYDYQARNDDELSFPKHAII---------SNVTRAEGGWWRGDYGGK-----RM 829
S ++ ++ + L F + + + A GG W G+
Sbjct: 4 SFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQER 63
Query: 830 HWFPSNYVAE 839
P+ AE
Sbjct: 64 GIIPNQSRAE 73
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 33.9 bits (78), Expect = 0.10
Identities = 19/147 (12%), Positives = 53/147 (36%), Gaps = 19/147 (12%)
Query: 114 LRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKL-----REHFQEVDTRKTNELAFDE 168
+ +F ++ G V+ ++++ L + + + R +D T ++ F+
Sbjct: 2 VYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNA 61
Query: 169 FSILYNRIMFDEQMFTDSYSHYSSDGQ-TVTASELTNFLIREQNETNVNEREVSRHMRDY 227
F L+ + ++ F DG TV EL + ++ + ++ ++ Y
Sbjct: 62 FKELWAALNAWKENF----MTVDQDGSGTVEHHELRQAI--GLMGYRLSPQTLTTIVKRY 115
Query: 228 LQDEQRNVQEPYFTFMEFIDFLFSKQN 254
+ + F +++ +
Sbjct: 116 --SKNGRI-----FFDDYVACCVKLRA 135
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 34.5 bits (79), Expect = 0.18
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 664 HPT---ATRSQAEDLLRRVPSDGAFLVRPSENDNSSYVISFRAEDKI-KHCRIRVE---- 715
HP QAED LR G F++R S + VI+++ + + +H I+
Sbjct: 1024 HPYYFPFNGRQAEDYLRSKE-RGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKEN 1082
Query: 716 ----GRLYTIGTTQFESLVELISYYERH--PLYKKIE 746
G++ + ++ L ++I + + +
Sbjct: 1083 PLALGKVLIVDNQKYNDLDQII---VEYLQNKVRLLN 1116
Score = 30.6 bits (69), Expect = 2.5
Identities = 23/179 (12%), Positives = 60/179 (33%), Gaps = 44/179 (24%)
Query: 430 KLAEDKIKHCRIRVE--------GRLYTIGTTQFESLVELISYYERHPLYKKIELWYPVS 481
KL +D +H I+ G++ + ++ L ++I +
Sbjct: 1064 KLDKDLFQHIDIQELEKENPLALGKVLIVDNQKYNDLDQII---VEY------------- 1107
Query: 482 EDLIQRMGLGVPNDELHFGEKWFHGRLSGGRAEAEDLLRRYS--HLGDGTFLVRESETFI 539
+Q + +E+ EK+ G + + + YS + + +
Sbjct: 1108 ---LQNKVRLL--NEMTSSEKFKS----GTKKDVVKFIEDYSRVNPNKSVYYFSLNHDNP 1158
Query: 540 GDYSLSF--WWQGRVNHCRIRSKPESGQFYLVEKSYFDSLYSLIS----HYRTNHLRSQ 592
G + L F ++ ++ ++LV + S+ L + ++N +++
Sbjct: 1159 GWFYLMFKINANSKLYTWNVKLTNTG--YFLV-NYNYPSVIQLCNGFKTLLKSNSSKNR 1214
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 33.7 bits (78), Expect = 0.20
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 789 ALYDYQARNDDELSFPKHAIISNVTRAEGG---WWRGDYGGKRMHWFPSNYVAE---IEP 842
AL+DY+ +NDDEL + ++ + R + WW K + P N + I+P
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK-EGYVPRNLLGLYPRIKP 233
Query: 843 QHN 845
+
Sbjct: 234 RQR 236
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 33.0 bits (76), Expect = 0.25
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDS 186
+++ ++ L S + D + E+ FDEF L++ I+ + F
Sbjct: 43 AISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGF--- 99
Query: 187 YSHYSSDGQ-TVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYFTFMEF 245
S G + ++E+ L V+E+ MR + + + ++ F ++
Sbjct: 100 -RKRDSSGDGRLDSNEVRAAL-LSSGY-QVSEQTFQALMRKFDRQRRGSL-----GFDDY 151
Query: 246 IDFLFSKQN 254
++
Sbjct: 152 VELSIFVCR 160
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 32.7 bits (75), Expect = 0.26
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 114 LRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKL-----REHFQEVDTRKTNELAFDE 168
L +F S+ G ++ +++ L + R +D + + F+E
Sbjct: 4 LYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 63
Query: 169 FSILYNRIMFDEQMFTDSYSHYSSDGQ-TVTASELTNFLIREQNETNVNEREVSRHMRDY 227
F L+ + Q F + SD TV EL L +N + V+ + Y
Sbjct: 64 FKELWAVLNGWRQHF----ISFDSDRSGTVDPQELQKAL--TTMGFRLNPQTVNSIAKRY 117
Query: 228 LQDEQRNVQEPYFTFMEFIDFLFSKQN 254
+ TF ++I +
Sbjct: 118 STSGK-------ITFDDYIACCVKLRA 137
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621,
glycerophosphodiester phosphodiesterase (GDPD), STRU
genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP:
c.1.18.3
Length = 234
Score = 33.0 bits (76), Expect = 0.27
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TTKIKFKDVVKTIRDHAFE 349
E++ EA+++ + G +ELD DG +V H L + IRD
Sbjct: 27 ENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLF-----GLDVKIRDATVS 80
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 278
Score = 33.3 bits (76), Expect = 0.31
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TTKIKFKDVVKTIRDHAFE 349
E+S A + +E+D DG I+ H +TL TT I++
Sbjct: 32 ENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDRTT-----TGKGEIKNWTLA 85
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 30.1 bits (69), Expect = 0.39
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIM 177
++L + + + + + + F+E+D EL DEF+ +++
Sbjct: 17 KLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKML 67
>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete
chrysosporium}
Length = 352
Score = 32.9 bits (75), Expect = 0.46
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 101 TLRAPYPLNVERWLRKHFYSLEGPRETVNLKDIKT 135
T+R YP N+ RW+RK ++ ++T N + IKT
Sbjct: 291 TIRDGYP-NLHRWMRKLYWGNPAFKDTCNFEHIKT 324
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 32.0 bits (73), Expect = 0.46
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 128 VNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
V+L + K FL V ++ +K F +D K +++ DEF + N +F
Sbjct: 119 VSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGL 171
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.60A {Silicibacter
pomeroyi}
Length = 313
Score = 32.4 bits (74), Expect = 0.62
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL 330
E++ E + L G R +E D DG P+V H H L
Sbjct: 32 ENTLEGFAFTLAAGVRALEFDVVMTADGVPVVTHNHHL 69
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2; 2.81A
{Galdieria sulphuraria}
Length = 258
Score = 31.9 bits (73), Expect = 0.72
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTLTTKIKFKDVVKTIRDHAFE 349
E++ ++V C+ + IE D G +++HG T +KD I D + E
Sbjct: 23 ENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKDGTSRIGDLSLE 79
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics,
joint center FO structural genomics, JCSG; HET: UNL;
1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Length = 244
Score = 31.6 bits (71), Expect = 0.76
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 476 LWYPVSEDLIQRMGLGVPNDE---LHFGEKWFHGRLSGGRAEAEDLLRRYSHL------- 525
+ PVS+ +++ GV DE L++GE W L R E + R L
Sbjct: 138 TYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQ 197
Query: 526 --GDGTFLVRESETFIGDYSLSF 546
GD L + E I D+ +++
Sbjct: 198 VAGDAAVLQMDKEDLIEDFLIAY 220
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 32.1 bits (72), Expect = 0.78
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 498 HFGEKWFHGRLSG--GRAEAEDLLRRYSHLGDGTFLVRESETFIGDYSLSFWWQGRVNHC 555
H W G + G + +A DLL GTFL+R S++ IG ++ W+
Sbjct: 457 HHKPHWNDGAILGFVNKQQAHDLLINKPD---GTFLLRFSDSEIG--GITIAWKFDSPDR 511
Query: 556 RIRS 559
+ +
Sbjct: 512 NLWN 515
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2,
protein structure initiative, midwest center for STR
genomics, hydrolase; 2.60A {Shigella flexneri}
Length = 247
Score = 31.8 bits (73), Expect = 0.83
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 297 EAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TT 332
A + G + IE D DG + H L T+
Sbjct: 25 AAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTS 62
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester
phosphodiesterase, T. tengcongensis; 1.91A
{Thermoanaerobacter tengcongensis}
Length = 252
Score = 31.5 bits (72), Expect = 0.87
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 297 EAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TTKIKFKDVVKTIRDHAFE 349
A+ R + G IELD DG +V H T+ TT + ++D E
Sbjct: 30 AAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTT-----NGEGFVKDFTLE 79
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 30.9 bits (70), Expect = 0.96
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 111 ERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNK--------LREHFQEVDTRKTN 162
R R+ F L G V+ ++ L +V + K R +D+ T
Sbjct: 3 VRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 163 ELAFDEFSILYNRIMFDEQMFTDSYSHYSSDGQ-TVTASELTNFL 206
+L F+EF L+N I + ++ + D T+ +SEL
Sbjct: 63 KLGFEEFKYLWNNIKKWQAIY----KQFDVDRSGTIGSSELPGAF 103
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 31.0 bits (71), Expect = 0.97
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
T+ K++ T + + + +L++ EVD + F EF + R M D
Sbjct: 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 29.1 bits (66), Expect = 0.99
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRI 176
V+ +++K F+ + + L+ F+ +D E+ +EF+ Y I
Sbjct: 16 AVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 30.7 bits (70), Expect = 1.0
Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 14/147 (9%)
Query: 111 ERWLRKHFYSLEGPR-ETVNLKDIKTFLPRVNCK-MSTNKLREHFQEVDTRKTNELAFDE 168
+ +L F ++ R ++ +++ L + +R D + F E
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 65
Query: 169 FSILYNRIMFDEQMFTDSYSHYSSDGQ-TVTASELTNFLIREQNETNVNEREVSRHMRDY 227
F+ ++ I + +F Y D + +EL L ++++ +R +
Sbjct: 66 FTGVWKYITDWQNVF----RTYDRDNSGMIDKNELKQAL-SGFGY-RLSDQFHDILIRKF 119
Query: 228 LQDEQRNVQEPYFTFMEFIDFLFSKQN 254
+ + + F +FI Q
Sbjct: 120 DRQGRGQI-----AFDDFIQGCIVLQR 141
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 30.5 bits (70), Expect = 1.0
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
+ + ++T L + ++ E F E D ++ F EF + R M
Sbjct: 22 FITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQT 75
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium
tumefaciens STR. C58, structural genomics; 2.50A
{Agrobacterium tumefaciens str} SCOP: c.1.18.3
Length = 248
Score = 31.1 bits (71), Expect = 1.1
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 298 AYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TTKIKFKDVVKTIRDHAFE 349
A L+QG IELD + DG V H TL TT + +
Sbjct: 21 AADLALQQGADYIELDVRESADGVLYVIHDETLDRTT-----NGTGPVGHMLSS 69
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics; HET: MSE PE4;
1.55A {Parabacteroides distasonis}
Length = 292
Score = 31.3 bits (71), Expect = 1.2
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TTKIKFKDVVKTIRDHAFE 349
E+S E + L E+D D +++H TL T+ + + D+ +E
Sbjct: 47 ENSMETFENTLSYTPATFEIDPRLTKDSVIVLFHDDTLERTS-----NGTGKVSDYTWE 100
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.89A {Parabacteroides distasonis}
Length = 238
Score = 31.0 bits (71), Expect = 1.3
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTLT-TKIK 335
++S + R G E D D +VYH + + I+
Sbjct: 21 QNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQ 64
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 30.2 bits (69), Expect = 1.4
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDS 186
V+ I L + + + + +R+ E D ++ FD F I+ R + +E
Sbjct: 30 RVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQM 89
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 31.0 bits (71), Expect = 1.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 297 EAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TT 332
+ +QG + +E+D DG P+++H L TT
Sbjct: 28 ASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDDYLSRTT 65
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 31.3 bits (71), Expect = 1.4
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 782 PASITVKALYDYQARNDDE-----LSFPKHAIISNVTRAEGGWW 820
S+ V+AL+DY DD L F I+ ++ WW
Sbjct: 3 KRSLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWW 46
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 28.8 bits (65), Expect = 1.5
Identities = 5/54 (9%), Positives = 20/54 (37%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
+ +++ T + + + K+ E ++ D + + + F + +
Sbjct: 30 KLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYGQEV 83
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 29.8 bits (67), Expect = 1.5
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 115 RKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSI 171
+ F+SL+ + + F + L + + D + EFSI
Sbjct: 36 DQQFHSLKPISGFITGDQARNFF--FQSGLPQPVLAQIWALADMNNDGRMDQVEFSI 90
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 30.1 bits (69), Expect = 1.5
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD---EQMF 183
T+ K++ T + + + +L++ EVD + F EF L R M + E+
Sbjct: 26 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEEL 85
Query: 184 TDSYSHYSSDGQ-TVTASEL 202
+++ + DG ++A+EL
Sbjct: 86 IEAFKVFDRDGNGLISAAEL 105
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 29.0 bits (65), Expect = 1.6
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 117 HFYSL-EGPRETVNLKDIKTFLPR---VNCKMSTNKLREHFQEVDTRKTNELAFDEFSIL 172
H YS EG + T++ K++K + + + K+ ++ +++D K E+ F E+
Sbjct: 17 HKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTF 76
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod
phosphodiesterase, HB8; 1.30A {Thermus thermophilus}
SCOP: c.1.18.3 PDB: 1v8e_A
Length = 224
Score = 30.6 bits (70), Expect = 1.6
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 297 EAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL 330
E++ L G +ELD W DG V H
Sbjct: 26 ESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDT 59
>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C
family, structural genomics, PSI- protein structure
initiative; 2.10A {Corynebacterium glutamicum}
Length = 362
Score = 30.9 bits (70), Expect = 1.6
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 106 YPLNVERWLRKHFYSLEGPRETVNLKDIK 134
P N+ +LR + G +T + +IK
Sbjct: 273 MP-NLWGYLR-DLFQTPGFGDTTDFTEIK 299
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 31.0 bits (70), Expect = 1.7
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD---EQMF 183
T+ K++ T + + + +L++ EVD + F EF + R M D E+
Sbjct: 328 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI 387
Query: 184 TDSYSHYSSDGQ-TVTASELTNFLIREQNETNVNEREVSRHMRDYLQDEQRNVQEPYFTF 242
+++ + DG ++A+EL + + E + + EV +R+ D V +
Sbjct: 388 REAFRVFDKDGNGYISAAELRHVM-TNLGE-KLTDEEVDEMIREADIDGDGQV-----NY 440
Query: 243 MEFIDFLFSK 252
EF+ + +K
Sbjct: 441 EEFVQMMTAK 450
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 29.7 bits (68), Expect = 1.9
Identities = 9/54 (16%), Positives = 29/54 (53%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
T+++K++K + + + ++++ E+D T ++ F +F + + M ++
Sbjct: 22 TIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEK 75
>3r3e_A Uncharacterized protein YQJG; thioredoxin domain, GST, glutathione
transferase, glutathion disulfide bond reductase,
transferase; HET: GSH; 2.21A {Escherichia coli}
Length = 328
Score = 30.5 bits (69), Expect = 2.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 106 YPLNVERWLRKHFYSLEGPRETVNLKDIKT 135
Y N+ +LR Y + G ETVN I+
Sbjct: 267 YL-NLYGFLR-DIYQMPGIAETVNFDHIRN 294
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 115 RKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYN 174
F SL ++ +K L +N K+ + L ++ D L DEF++
Sbjct: 18 DAIFDSLSPVNGFLSGDKVKPVL--LNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMF 75
Query: 175 RI 176
+
Sbjct: 76 LV 77
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 30.2 bits (68), Expect = 2.1
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 7/134 (5%)
Query: 114 LRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILY 173
K F E P T+ + + K F + + +T + F+ DT N + F E+
Sbjct: 27 WYKKFLE-ECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAAL 85
Query: 174 NRIMF--DEQMFTDSYSHYSSDGQ-TVTASELTNFLIREQNETNVNEREVSRHMRDYLQD 230
N ++ E ++ Y D + EL + + EV + L
Sbjct: 86 NLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLT 145
Query: 231 EQRNVQEPYFTFME 244
+ V F+
Sbjct: 146 PEEVVDR---IFLL 156
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 29.7 bits (68), Expect = 2.2
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFD---EQMF 183
+++ ++ T + + S ++ + E+D + + F EF L +R + EQ
Sbjct: 27 SISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQEL 86
Query: 184 TDSYSHYSSDGQ-TVTASEL 202
+++ + +G ++A+EL
Sbjct: 87 LEAFKVFDKNGDGLISAAEL 106
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 29.9 bits (68), Expect = 2.4
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQ 181
++ K++ T + + + +L +EVD + + F+EF ++ R M ++
Sbjct: 36 DISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDA 90
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 29.7 bits (67), Expect = 3.1
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 114 LRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKLREH-FQEVDTRKTNELAFDEFSIL 172
K F + E P + L + K F N S NK E F+ D K + F E+
Sbjct: 19 WYKKFMT-ECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAA 77
Query: 173 YNRIM--FDEQMFTDSYSHYSSDGQ-TVTASELTNFLIREQNETNVNERE 219
+ ++ +Q + Y DG + EL N + + NE
Sbjct: 78 LSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAM 127
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 29.8 bits (67), Expect = 4.1
Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 144 MSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDSYSHYSSDGQ-TVTASEL 202
+ F+ D +++++ F E+ + + Y+ D ++ E+
Sbjct: 220 DKKSVQDALFRYADEDESDDVGFSEYV----HLGLCLLVLRILYAFADFDKSGQLSKEEV 275
Query: 203 TNFLIREQNETNVNEREVSRHMRDY 227
L + + ++
Sbjct: 276 QKVL-EDAHIPESARKKFEHQFSVV 299
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 29.4 bits (66), Expect = 4.3
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDS 186
T+ + ++ ++S + DT ++F EF +Y + ++ +
Sbjct: 67 TLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM----ELAYNL 122
Query: 187 YSHYSSDGQ-TVTASELTNFL 206
+ + T+ E+ L
Sbjct: 123 FVMNARARSGTLEPHEILPAL 143
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structu initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 29.6 bits (66), Expect = 4.3
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 293 ESSCEAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TTKIKFKDVVKTIRDHAFET 350
E + A QG +E D D +V H H L T DV D A +
Sbjct: 45 EHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVT-----DVADRFPDRARKD 99
Query: 351 SKYPVI 356
+Y I
Sbjct: 100 GRYYAI 105
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 28.3 bits (63), Expect = 4.5
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 556 RIRSKPESGQFYLVEKSYFDS-LYSLISHYRTNHLRSQEFLITLQEPVPQPN 606
R+R P+SG Y+ + D+ Y + +T + + + + + +PVP+P
Sbjct: 65 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPV 116
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 27.5 bits (62), Expect = 4.5
Identities = 7/54 (12%), Positives = 22/54 (40%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
+++ ++K + + + ++ E E D + FD+F + + +
Sbjct: 23 SIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKIKNR 76
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 27.6 bits (62), Expect = 4.8
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 143 KMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
+ +L +EVD + + F+EF ++ R M ++
Sbjct: 52 NPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKED 89
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 29.4 bits (65), Expect = 4.8
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 775 MDPASFTPASITVKALYDYQARNDDE-------LSFPKHAIISNVTRAEGGWW 820
++ A P + V+ Y A ++D+ +SF + + WW
Sbjct: 29 LEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWW 81
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1,
glycerophosphoryl diester phosphodiesterase, ST
genomics; HET: MSE CIT GOL; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 272
Score = 29.2 bits (66), Expect = 5.0
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 297 EAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL 330
A+ + L G +E D D +V H
Sbjct: 27 AAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFF 60
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Length = 250
Score = 29.1 bits (66), Expect = 5.0
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 297 EAYVRCLRQGCRCIELDCWDGPDGTPIVYHGHTL--TTKIKFKDVVKTIRDHAFE 349
+ +E D DG +V+H TL TT D+ I D
Sbjct: 21 HGFTATAAMALEEVEFDLHPTADGAIVVHHDPTLDATT-----DMTGAIVDMTLA 70
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.7 bits (62), Expect = 5.5
Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 115 RKHFYSLEGPRE-TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSI 171
+ F + + V+ +++ + + + L + DT+ +L+ D+F++
Sbjct: 13 DEIFLKTDKDMDGFVSGLEVREIF--LKTGLPSTLLAHIWSLCDTKDCGKLSKDQFAL 68
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 29.0 bits (65), Expect = 7.0
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 787 VKALYDYQARNDD-----ELSFPKHAIISNVTRAEGGWW 820
++AL+DY D LSF ++ + + WW
Sbjct: 4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWW 42
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 28.2 bits (63), Expect = 7.8
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 128 VNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
+ L + K + S+ E F+ D ++ +L DE + + +
Sbjct: 126 ITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTM 178
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 27.9 bits (63), Expect = 7.9
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDEQMFTDS 186
+N +D+ + + + +L E Q+++ + FD+F L + E
Sbjct: 27 YINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIG 86
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 27.0 bits (60), Expect = 8.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 117 HFYSL-EGPRETVNLKDIKTFLPR-VNCKMSTNKLREHFQEVDTRKTNELAFDEFSIL 172
H YSL +G V D+K L + F+E+D + F EF IL
Sbjct: 17 HKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLIL 74
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 29.0 bits (64), Expect = 8.3
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 107 PLNVERWLRKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKLREHFQEV--------DT 158
ER RK F L G V+ ++ L +V + K + D+
Sbjct: 726 ESEEERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDS 785
Query: 159 RKTNELAFDEFSILYNRIMFDEQMFTDSYSHYSSDG-QTVTASELTNFL 206
T +L F+EF L+N I + + Y + +D T+ ++EL
Sbjct: 786 DTTGKLGFEEFKYLWNNI----KKWQGIYKRFETDRSGTIGSNELPGAF 830
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 27.6 bits (61), Expect = 8.5
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 115 RKHFYSLEGPRETVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYN 174
+ FY+L + + K + V K+ L + ++ D K L +EF++ +
Sbjct: 54 DEIFYTLSPVNGKITGANAKKEM--VKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANH 111
Query: 175 RI 176
I
Sbjct: 112 LI 113
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 27.4 bits (61), Expect = 8.9
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 115 RKHFYSLEGPRE-TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSI 171
R+ F S + + +T L + + +L + D + +L +EF +
Sbjct: 17 RQLFNSHDKTMSGHLTGPQARTIL--MQSSLPQAQLASIWNLSDIDQDGKLTAEEFIL 72
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 27.9 bits (63), Expect = 9.5
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 127 TVNLKDIKTFLPRVNCKMSTNKLREHFQEVDTRKTNELAFDEFSILYNRIMFDE 180
+++ K++ + + + +L+E EVD + + FDEF ++ R M D+
Sbjct: 35 SISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDD 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,401,427
Number of extensions: 825035
Number of successful extensions: 3410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2614
Number of HSP's successfully gapped: 592
Length of query: 851
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 749
Effective length of database: 3,853,851
Effective search space: 2886534399
Effective search space used: 2886534399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)