BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy879
(317 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193605856|ref|XP_001945771.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328696454|ref|XP_003240029.1| PREDICTED: replication factor C subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 363
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/312 (76%), Positives = 277/312 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP++F+DIVGNE+TV RL+ FSS GNVPNIII+GPPGVGKTTTIL LARILLG +F
Sbjct: 49 IEKYRPKSFTDIVGNEETVLRLEKFSSCGNVPNIIIAGPPGVGKTTTILALARILLGGAF 108
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGIDTVRNKIKMFAQQKVTLPPGRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 109 KEAVLELNASSDRGIDTVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTDGAQQALRRTM 168
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++SNTTRFALACNNS+KIIE IQSRCAMLRY KL+D +++++++++C+ E +S + DGL
Sbjct: 169 ELWSNTTRFALACNNSDKIIEAIQSRCAMLRYGKLSDQEVMTQMLKVCKSEEVSFSADGL 228
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTAQGDMRQALNNLQST NGF HV + VFKVCDEPHPL VKEMLL C + N+ +
Sbjct: 229 EAVVFTAQGDMRQALNNLQSTWNGFRHVDSTNVFKVCDEPHPLLVKEMLLECADQNISKA 288
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+KLGYAPEDII NIFRVAK L+I E LKL +QEIG H+RI EG+NSLLQLS
Sbjct: 289 YKIMAHLWKLGYAPEDIITNIFRVAKHLEIKESLKLKFVQEIGMAHIRIVEGMNSLLQLS 348
Query: 301 GLLARLCIVGSK 312
GLLA+LC V +K
Sbjct: 349 GLLAKLCTVSAK 360
>gi|327289387|ref|XP_003229406.1| PREDICTED: replication factor C subunit 2-like [Anolis
carolinensis]
Length = 329
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/307 (76%), Positives = 273/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP S+IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 14 VEKYRPLKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 74 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KLTD Q+L+++++I EKEN+ +T+DGL
Sbjct: 134 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQVLARLMKIVEKENVQYTDDGL 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQSTH+GFG V +E VFKVCDEPHPL VKEML +CV N+ ++
Sbjct: 194 EAIIFTAQGDMRQALNNLQSTHSGFGFVNSENVFKVCDEPHPLLVKEMLGHCVSANIDEA 253
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+KLGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 254 YKILAHLWKLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 313
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 314 GLLARLC 320
>gi|350401447|ref|XP_003486155.1| PREDICTED: replication factor C subunit 2-like [Bombus impatiens]
Length = 351
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/307 (77%), Positives = 270/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP+F
Sbjct: 39 IEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILLGPAF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQ++V L G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KEAVLELNASNERGIDVVRNKIKMFAQKRVNLAKGKHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLRY KL+DAQ+L+K+IE+C+KE++SHT+DGL
Sbjct: 159 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAKIIEVCQKEDVSHTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST+NGFGHV +E VFKVCDEPHPL VKEML C +G + +
Sbjct: 219 EAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLELCAQGKISKA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y I+ HL+K+GY+ ED+I NIFRV L I EPLKL I+EIG HL I +G+NSLLQ++
Sbjct: 279 YGIMEHLWKMGYSAEDLISNIFRVCTNLSIEEPLKLDFIKEIGITHLGIVDGINSLLQMN 338
Query: 301 GLLARLC 307
LLARLC
Sbjct: 339 SLLARLC 345
>gi|340729148|ref|XP_003402870.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 351
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/307 (77%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP F
Sbjct: 39 IEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILLGPVF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQ+KV L G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KEAVLELNASNERGIDVVRNKIKMFAQKKVNLAKGKHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLRY KL+DAQ+L+K+IE+C+KE++SHT+DGL
Sbjct: 159 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAKIIEVCQKEDVSHTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST+NGFGHV +E VFKVCDEPHPL VKEML C +G + +
Sbjct: 219 EAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLELCAQGKISKA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y I+ HL+K+GY+ ED++ NIFRV L I EPLKL I+EIG HL I +G+NSLLQ++
Sbjct: 279 YGIMEHLWKMGYSAEDLVSNIFRVCTNLSIEEPLKLDFIKEIGITHLGIVDGINSLLQMN 338
Query: 301 GLLARLC 307
LLARLC
Sbjct: 339 SLLARLC 345
>gi|340729088|ref|XP_003402840.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 316
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/307 (77%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP F
Sbjct: 4 IEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILLGPVF 63
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQ+KV L G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 64 KEAVLELNASNERGIDVVRNKIKMFAQKKVNLAKGKHKIIILDEADSMTDGAQQALRRTM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLRY KL+DAQ+L+K+IE+C+KE++SHT+DGL
Sbjct: 124 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAKIIEVCQKEDVSHTDDGL 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST+NGFGHV +E VFKVCDEPHPL VKEML C +G + +
Sbjct: 184 EAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLELCAQGKISKA 243
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y I+ HL+K+GY+ ED++ NIFRV L I EPLKL I+EIG HL I +G+NSLLQ++
Sbjct: 244 YGIMEHLWKMGYSAEDLVSNIFRVCTNLSIEEPLKLDFIKEIGITHLGIVDGINSLLQMN 303
Query: 301 GLLARLC 307
LLARLC
Sbjct: 304 SLLARLC 310
>gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera]
Length = 350
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/307 (77%), Positives = 271/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP F
Sbjct: 39 IEKYRPQVFSDIVGNEDTVSRLSVFAQQGNCPNIIIAGPPGVGKTTTILCLARILLGPIF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASNDRGID VRNKIKMFAQ++V LP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 99 KEAVLELNASNDRGIDVVRNKIKMFAQKRVNLPKGKHKIIILDEADSMTAGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN+S+KIIEPIQSRCAMLRY KL+DAQ+L+K+I+IC+KE++SHT+DGL
Sbjct: 159 EIYSNTTRFALACNSSDKIIEPIQSRCAMLRYGKLSDAQILAKIIDICKKEDVSHTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQSTHNGF HV +E VFKVCDEPHPL VKEML C EGN+ +
Sbjct: 219 EAIVFTAQGDMRQALNNLQSTHNGFNHVNSENVFKVCDEPHPLLVKEMLEFCTEGNISKA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y ++ HL+K+GY+ EDII NIF+VAK L I E LKL ++EIG HL I +GVNSLLQ++
Sbjct: 279 YGVMEHLWKMGYSAEDIINNIFKVAKNLLIDETLKLDFVKEIGITHLGIVDGVNSLLQMN 338
Query: 301 GLLARLC 307
LLARLC
Sbjct: 339 SLLARLC 345
>gi|380013855|ref|XP_003690961.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 2-like
[Apis florea]
Length = 351
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/307 (77%), Positives = 271/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP F
Sbjct: 40 IEKYRPQIFSDIVGNEDTVSRLSVFAQQGNCPNIIIAGPPGVGKTTTILCLARILLGPIF 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASNDRGID VRNKIKMFAQ++V LP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 100 KEAVLELNASNDRGIDVVRNKIKMFAQKRVNLPKGKHKIIILDEADSMTSGAQQALRRTM 159
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN+S+KIIEPIQSRCAMLRY KL+DAQ+L+K+I+IC+KE++SHT+DGL
Sbjct: 160 EIYSNTTRFALACNSSDKIIEPIQSRCAMLRYGKLSDAQILAKIIDICKKEDVSHTDDGL 219
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQSTHNGF HV +E VFKVCDEPHPL VKEML C EGN+ +
Sbjct: 220 EAIVFTAQGDMRQALNNLQSTHNGFNHVNSENVFKVCDEPHPLLVKEMLEFCKEGNISKA 279
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y ++ HL+K+GY+ EDII NIF+VAK L I E LKL ++EIG HL I +GVNSLLQ++
Sbjct: 280 YGVMEHLWKMGYSAEDIINNIFKVAKNLLIDETLKLDFVKEIGITHLGIVDGVNSLLQMN 339
Query: 301 GLLARLC 307
LLARLC
Sbjct: 340 SLLARLC 346
>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/307 (75%), Positives = 275/307 (89%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ F +IVGNE+TV RL +F+S GN PNIII+GPPGVGKTTTILCLARILLGP+F
Sbjct: 28 IEKYRPQRFEEIVGNEETVARLGIFASQGNAPNIIIAGPPGVGKTTTILCLARILLGPNF 87
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNASN+RGID VR+KIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 88 REAVLELNASNERGIDVVRSKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLR++KL+DAQ+L+KV+EIC+ EN+S+ DGL
Sbjct: 148 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSDAQVLAKVVEICQHENLSYDEDGL 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST NGFGH++ VFKVCDEPHPL V++ML +CV+G++ +
Sbjct: 208 EAIVFTAQGDMRQALNNLQSTANGFGHISGANVFKVCDEPHPLLVQDMLQHCVKGDIHKA 267
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGYA EDIIGN+FRV + +D+ E LKL I+EIG H++I +G+NSLLQ+S
Sbjct: 268 YKIMSKLWKLGYAAEDIIGNVFRVCRRMDMNEKLKLYFIREIGETHMKIVDGLNSLLQMS 327
Query: 301 GLLARLC 307
GLLAR+C
Sbjct: 328 GLLARMC 334
>gi|449282866|gb|EMC89612.1| Replication factor C subunit 2, partial [Columba livia]
Length = 316
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/307 (75%), Positives = 273/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 1 VEKYRPMKLCEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 60
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 61 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD+Q+L+++++I EKE++ +T+DGL
Sbjct: 121 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 181 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL++LGYAPED+IGNIFRV KT +PE LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 241 YKILAHLWRLGYAPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 300
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 301 GLLARLC 307
>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
Length = 362
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/308 (75%), Positives = 272/308 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGNEDTV RL+VFS GN+PNIII+G PG+GKTT+ILCLAR LLGP++
Sbjct: 45 VEKYRPAKLCDVVGNEDTVSRLEVFSQQGNMPNIIIAGSPGIGKTTSILCLARTLLGPAY 104
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 105 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 164
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIE IQSRCA+LRY+KLTD Q+L +++ +CEKEN+ HT+DGL
Sbjct: 165 EIYSKTTRFALACNASDKIIEAIQSRCAVLRYSKLTDNQILERLLYVCEKENVEHTDDGL 224
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNNLQST +GFG+V +E VFKVCDEPHPL VKEML +CV+ N+ ++
Sbjct: 225 EAVIFTAQGDMRQALNNLQSTWSGFGYVNSENVFKVCDEPHPLLVKEMLGHCVDANIDEA 284
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+K+GY+PEDIIGNIFRV KT + E LKL I+EIG H+RI +GV+SLLQLS
Sbjct: 285 YKILKHLWKMGYSPEDIIGNIFRVCKTYQMHEYLKLEFIKEIGYTHMRIVQGVDSLLQLS 344
Query: 301 GLLARLCI 308
GLLARLC+
Sbjct: 345 GLLARLCL 352
>gi|156537616|ref|XP_001607747.1| PREDICTED: replication factor C subunit 2-like [Nasonia
vitripennis]
Length = 351
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/312 (75%), Positives = 270/312 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ F+DIVGNEDTVERL +F+ GN PN+II+GPPGVGKTTTILC ARILLGPSF
Sbjct: 37 IEKYRPQVFTDIVGNEDTVERLSIFAQHGNAPNLIIAGPPGVGKTTTILCFARILLGPSF 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASN+RGID VRNKIKMFAQ+KV L PG+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNERGIDVVRNKIKMFAQKKVNLAPGKHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACNNSEKIIEPIQSRCAM+RY KL+DAQ+L+KVI++C+KEN+S+T+DGL
Sbjct: 157 EIYSSTTRFALACNNSEKIIEPIQSRCAMIRYGKLSDAQVLAKVIDVCQKENVSYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST NGF HV + VFKVCDEPHPL VK ML C +G + +
Sbjct: 217 EAIVFTAQGDMRQALNNLQSTVNGFNHVNGKNVFKVCDEPHPLLVKNMLEICTQGEISKA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y+I+ HL+ +GY+PED+I IFRVAK L I E LKL I+EIG H+ I GV+SLLQL+
Sbjct: 277 YEILKHLWHMGYSPEDLISTIFRVAKNLTIDEYLKLEFIKEIGLTHMGIVNGVSSLLQLN 336
Query: 301 GLLARLCIVGSK 312
L+ARLC V K
Sbjct: 337 SLIARLCRVSYK 348
>gi|345311289|ref|XP_001516769.2| PREDICTED: replication factor C subunit 2-like [Ornithorhynchus
anatinus]
Length = 329
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 273/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 14 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI++LDEADSMTDGAQQALRRTM
Sbjct: 74 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIVLDEADSMTDGAQQALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++++ EKE++ H++DGL
Sbjct: 134 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLKVIEKEDVPHSDDGL 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 194 EAIVFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVHANIDEA 253
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL++LGY+PEDIIGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 254 YKILAHLWRLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 313
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 314 GLLARLC 320
>gi|395536548|ref|XP_003770276.1| PREDICTED: replication factor C subunit 2 [Sarcophilus harrisii]
Length = 406
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 231/307 (75%), Positives = 272/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIIISGPPG GKTT+ILCLAR LLGPS
Sbjct: 91 VEKYRPTKLTEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTTSILCLARALLGPSL 150
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 151 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 210
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 211 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMAVIEKEKVEYTDDGL 270
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEML +CV N+ ++
Sbjct: 271 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMLQHCVSANIDEA 330
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL++LGY+PED+IGNIFRV KT +PE LKL I+EIG H++I++GVNSLLQ++
Sbjct: 331 YKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIADGVNSLLQMA 390
Query: 301 GLLARLC 307
GLLA+LC
Sbjct: 391 GLLAKLC 397
>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
Length = 344
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/309 (75%), Positives = 275/309 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTILCLARILLG +F
Sbjct: 31 IEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILCLARILLGENF 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 91 REAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLRY+KL+D+Q+L+K+IEIC+KE +S+ DGL
Sbjct: 151 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRYSKLSDSQVLAKLIEICQKEALSYDEDGL 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST NGFGH++ VFKVCDEPHP+ V++ML +CV+G++ +
Sbjct: 211 EAIVFTAQGDMRQALNNLQSTANGFGHISGANVFKVCDEPHPMLVQDMLEHCVKGDVHKA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L++LGYA EDIIGNIFRV K +++ E LKL I+EIG H++I +G+NSLLQ+S
Sbjct: 271 YKIMAKLWRLGYAAEDIIGNIFRVCKRMNMNEKLKLCFIREIGETHMKIVDGLNSLLQMS 330
Query: 301 GLLARLCIV 309
GLLA+LC V
Sbjct: 331 GLLAKLCEV 339
>gi|45382983|ref|NP_990861.1| replication factor C subunit 2 [Gallus gallus]
gi|1703053|sp|P53033.1|RFC2_CHICK RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|527669|gb|AAA20552.1| replication factor C/activator 1 subunit [Gallus gallus]
Length = 359
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 273/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++VGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 44 VEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 103
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 104 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 163
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD+Q+L+++++I EKE++ +T+DGL
Sbjct: 164 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGL 223
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +C+ N+ ++
Sbjct: 224 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEA 283
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL++LGY+PED+IGNIFRV KT +PE LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 284 YKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 343
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 344 GLLARLC 350
>gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori]
gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori]
Length = 340
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/311 (74%), Positives = 275/311 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF DIVGNEDTV RL VF+ +GN PNIII+GPPGVGKTTTILCLAR+LLG SF
Sbjct: 24 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARVLLGVSF 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM
Sbjct: 84 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALA NNSEKIIEPIQSRCA+LRY++L+DAQ+L+KVIEIC KEN+S+T +G+
Sbjct: 144 ELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VFTAQGD+R ALNNLQST GFGH++ + VFKVCDEPHP+ V++ML C + ++ ++
Sbjct: 204 SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEACTKQDIHEA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK+I L K+GYA EDI+ NIFRV KTLDI E LKL+ I+EIG H+R+++G++S LQL+
Sbjct: 264 YKVIAKLCKIGYAAEDIVSNIFRVCKTLDISEELKLAFIREIGLTHMRVADGLSSPLQLA 323
Query: 301 GLLARLCIVGS 311
GLLAR+C V +
Sbjct: 324 GLLARMCRVAA 334
>gi|326931171|ref|XP_003211707.1| PREDICTED: replication factor C subunit 2-like [Meleagris
gallopavo]
Length = 360
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 273/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++VGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 45 VEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 104
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 105 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 164
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD+Q+L+++++I EKE++ +T+DGL
Sbjct: 165 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGL 224
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +C+ N+ ++
Sbjct: 225 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEA 284
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL++LGY+PED+IGNIFRV KT +PE LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 285 YKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 344
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 345 GLLARLC 351
>gi|322795578|gb|EFZ18260.1| hypothetical protein SINV_11151 [Solenopsis invicta]
Length = 354
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/308 (75%), Positives = 269/308 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLAR LLGP+F
Sbjct: 42 IEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLARTLLGPAF 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQ+KV LP G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 102 KEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQALRRTM 161
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACNN+E+IIEPIQSRCAMLRY KLTDAQ+L+KV+E+CEKENIS+T+DG+
Sbjct: 162 EIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQVLAKVLEVCEKENISYTDDGM 221
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST NGF HV AE VFKVCDEPHPL VK+ML NCV+G++ +
Sbjct: 222 EAIVFTAQGDMRQALNNLQSTRNGFNHVNAENVFKVCDEPHPLIVKDMLDNCVQGDVSKA 281
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ H +K+GY+ EDII N+F+V K + E LK+ I+EIG H+ I EG+NSLLQL
Sbjct: 282 CTVMDHFWKMGYSAEDIISNVFKVCKNHAMDEKLKIKFIKEIGITHMGIVEGINSLLQLH 341
Query: 301 GLLARLCI 308
L+ARLC+
Sbjct: 342 ALVARLCL 349
>gi|147904320|ref|NP_001084837.1| replication factor C (activator 1) 2, 40kDa [Xenopus laevis]
gi|47124709|gb|AAH70622.1| MGC81391 protein [Xenopus laevis]
Length = 348
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/307 (75%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPTM 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++++ EKE + T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKEKVQCTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNN+QST GFG V + VFKVCDEPHPL VKEML +CV N+ ++
Sbjct: 214 EAIVFTAQGDMRQALNNVQSTCAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVNANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+KLGY+PEDIIGNIFRV KT +PE LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 274 YKIVAHLWKLGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 333
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 334 GLLARLC 340
>gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis]
Length = 325
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/312 (74%), Positives = 272/312 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+TF DIVGN +TV RL F+ GN PNIIISGPPGVGKTTTILCLAR LLG SF
Sbjct: 13 IEKYRPKTFDDIVGNSETVSRLTTFAHDGNAPNIIISGPPGVGKTTTILCLARALLGSSF 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+ GID VRNKIKMFAQQKVTLPPGRHKI++LDEADSMT+ AQQALRRTM
Sbjct: 73 KEAVLELNASNEGGIDVVRNKIKMFAQQKVTLPPGRHKIIVLDEADSMTEAAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRF LACN SEK+IEPIQSRCAMLRY+KL+DA++L++V+++CEKE+IS+T+DGL
Sbjct: 133 EIYSDTTRFCLACNASEKVIEPIQSRCAMLRYSKLSDAEILAQVLKVCEKEDISYTSDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQSTH+GFG + ++ VFKVCDEPHPL VK+ML NC EG + ++
Sbjct: 193 EAIVFTAQGDMRQALNNLQSTHDGFGQIDSKNVFKVCDEPHPLLVKDMLSNCTEGKIDEA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK++ HL++LGY+PEDII NIFRV KT + E LKL I+EIG H++I G NSLLQLS
Sbjct: 253 YKVLSHLWRLGYSPEDIISNIFRVCKTHPMAEYLKLEFIKEIGQAHMKIVHGSNSLLQLS 312
Query: 301 GLLARLCIVGSK 312
GLLA+LC V K
Sbjct: 313 GLLAKLCNVTVK 324
>gi|410984622|ref|XP_003998626.1| PREDICTED: replication factor C subunit 2 isoform 1 [Felis catus]
Length = 352
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/307 (74%), Positives = 270/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP S+IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+F
Sbjct: 37 VEKYRPVKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAF 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIMILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLMTVLEQEKVQYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|348568402|ref|XP_003469987.1| PREDICTED: replication factor C subunit 2-like [Cavia porcellus]
Length = 352
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPIKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAM 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLSVIEKEAVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ D+
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDDA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGN+FRV KT + E LKL I+EIG H+R++EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNVFRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|351705383|gb|EHB08302.1| Replication factor C subunit 2 [Heterocephalus glaber]
Length = 352
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VFS GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPIKLNEIVGNEDTVSRLEVFSREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLSVIEKEAVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEML +CV N+ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMLQHCVSANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PED+IGN+FRV KT + E LKL I+EIG H+R++EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDVIGNVFRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|55926133|ref|NP_446238.1| replication factor C subunit 2 [Rattus norvegicus]
gi|81884071|sp|Q641W4.1|RFC2_RAT RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit C2
gi|51980598|gb|AAH82110.1| Replication factor C (activator 1) 2 [Rattus norvegicus]
gi|149063102|gb|EDM13425.1| replication factor C (activator 1) 2, isoform CRA_b [Rattus
norvegicus]
Length = 349
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 271/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+LS+++ + EKE + +T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 274 YKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 333
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 334 GLLARLC 340
>gi|332016496|gb|EGI57389.1| Replication factor C subunit 2 [Acromyrmex echinatior]
Length = 355
Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 270/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP+F
Sbjct: 43 IEKYRPQVFSDIVGNEDTVSRLSVFAQHGNTPNIIIAGPPGVGKTTTILCLARILLGPAF 102
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQ+KV LP G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 103 KEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQALRRTM 162
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACNN+E+IIEPIQSRCAMLRY KLTDA++L+KV+E+CEKEN+S+T+DG+
Sbjct: 163 EIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAEVLAKVLEVCEKENVSYTDDGM 222
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST+NGF HV AE VFKVCDEPHPL VK+ML +C++G++ +
Sbjct: 223 EAIIFTAQGDMRQALNNLQSTYNGFNHVNAENVFKVCDEPHPLIVKDMLDDCIKGDVSKA 282
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ H +K+GY+ EDII N+F+V K I E LKL ++EIG H+ I EG+NSLLQL
Sbjct: 283 CSVMDHFWKMGYSAEDIISNVFKVCKNHTIDERLKLKFVKEIGITHMGIVEGINSLLQLH 342
Query: 301 GLLARLC 307
L+ARLC
Sbjct: 343 ALVARLC 349
>gi|384475811|ref|NP_001245051.1| replication factor C subunit 2 [Macaca mulatta]
gi|402863243|ref|XP_003895940.1| PREDICTED: replication factor C subunit 2 isoform 1 [Papio anubis]
gi|355560573|gb|EHH17259.1| hypothetical protein EGK_13612 [Macaca mulatta]
gi|355761341|gb|EHH61789.1| hypothetical protein EGM_19875 [Macaca fascicularis]
gi|383420507|gb|AFH33467.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|384948612|gb|AFI37911.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|387542032|gb|AFJ71643.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
Length = 352
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMNVIEKERVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|11177922|ref|NP_064406.1| replication factor C subunit 2 [Mus musculus]
gi|23813636|sp|Q9WUK4.1|RFC2_MOUSE RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|4972952|gb|AAD34861.1|AF139987_4 replication factor C, 40kDa subunit [Mus musculus]
gi|9800515|gb|AAF99332.1|AF289664_3 RFC2 [Mus musculus]
gi|18606185|gb|AAH23028.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|26344918|dbj|BAC36108.1| unnamed protein product [Mus musculus]
gi|68534875|gb|AAH99370.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|74185767|dbj|BAE32762.1| unnamed protein product [Mus musculus]
gi|148687476|gb|EDL19423.1| replication factor C (activator 1) 2, isoform CRA_a [Mus musculus]
Length = 349
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 271/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 274 YKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 333
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 334 GLLARLC 340
>gi|307209915|gb|EFN86693.1| Replication factor C subunit 2 [Harpegnathos saltator]
Length = 351
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 268/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ F DIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP+F
Sbjct: 39 IEKYRPQVFPDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLARILLGPAF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQ+KV LP G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACNN+E+IIEPIQSRCAMLRY KLTDAQ+L+KV+E+CEKEN+S+T+DG+
Sbjct: 159 EIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQILAKVLEVCEKENVSYTDDGM 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST+NGF HV E VFKVCDEPHPL VKEML +C++G++ +
Sbjct: 219 EAIVFTAQGDMRQALNNLQSTYNGFNHVNGENVFKVCDEPHPLIVKEMLDDCIKGDVSKA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ H +K+GY+ EDII N+F+V K + E LKL ++EIG H+ I EG+NSLLQL
Sbjct: 279 CTVMDHFWKMGYSAEDIISNVFKVCKIHAMDEKLKLMFVKEIGITHMGIVEGINSLLQLH 338
Query: 301 GLLARLC 307
L+ARLC
Sbjct: 339 ALVARLC 345
>gi|449479599|ref|XP_002192072.2| PREDICTED: replication factor C subunit 2-like [Taeniopygia
guttata]
Length = 310
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 226/299 (75%), Positives = 269/299 (89%)
Query: 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68
S+IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+ KDAVLELN
Sbjct: 3 LSEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELN 62
Query: 69 ASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTR 128
ASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTMEIYS TTR
Sbjct: 63 ASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTR 122
Query: 129 FALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQ 188
FALACN S+KIIEPIQSRCA+LRY KLTDAQ+L+++++I EKE++++T+DGLEAI+FTAQ
Sbjct: 123 FALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFTAQ 182
Query: 189 GDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY 248
GDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +C+ N+ ++YKI+ HL+
Sbjct: 183 GDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLW 242
Query: 249 KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
+LGY+PED+IGNIFRV KT +PE LKL I+EIG H++I+EGVNSLLQ++GLLARLC
Sbjct: 243 RLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLC 301
>gi|296192221|ref|XP_002743970.1| PREDICTED: replication factor C subunit 2 isoform 1 [Callithrix
jacchus]
Length = 352
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 268/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNK+KMFAQ KVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKVKMFAQHKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + HT+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMSVIEKERVPHTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
Length = 325
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/309 (74%), Positives = 272/309 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+TF DIVGN +TV RLKVFS GN PNIII+GPPGVGKTTTILCLAR LLG SF
Sbjct: 13 IEKYRPKTFDDIVGNSETVSRLKVFSEDGNPPNIIIAGPPGVGKTTTILCLARALLGGSF 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASN+RGID VRNKIKMFAQQKVTLP RHKI++LDEADSMT+ AQQALRRTM
Sbjct: 73 KDAVLELNASNERGIDVVRNKIKMFAQQKVTLPQSRHKIIVLDEADSMTEAAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRF LACN+SEK+IEPIQSRCAMLRY++ +DA++L++VI++C+KE +S+T++GL
Sbjct: 133 EIYSDTTRFCLACNSSEKVIEPIQSRCAMLRYSRPSDAEVLAQVIKVCDKEGVSYTSEGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQSTH+GFG V +E VF+VCDEPHPL VK+ML +C EG M+++
Sbjct: 193 EAIVFTAQGDMRQALNNLQSTHDGFGKVISENVFRVCDEPHPLLVKDMLSHCAEGKMEEA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK++ HL+K+GY+PEDII N+FRV KT + E LKL I+EIG H+R+ G NSLLQLS
Sbjct: 253 YKVLSHLWKMGYSPEDIITNVFRVCKTHPMAEYLKLEFIKEIGQTHMRVVHGSNSLLQLS 312
Query: 301 GLLARLCIV 309
GLLA+LC V
Sbjct: 313 GLLAKLCHV 321
>gi|354484828|ref|XP_003504588.1| PREDICTED: replication factor C subunit 2-like [Cricetulus griseus]
Length = 325
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 10 VEKYRPIKLDEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 70 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 130 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 190 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDII NIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 250 YKILAHLWHLGYSPEDIISNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 309
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 310 GLLARLC 316
>gi|395843019|ref|XP_003794301.1| PREDICTED: replication factor C subunit 2 [Otolemur garnettii]
Length = 352
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 227/307 (73%), Positives = 270/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +++VGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPIKLNEVVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAM 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDVIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|31563534|ref|NP_852136.1| replication factor C subunit 2 isoform 1 [Homo sapiens]
gi|2507300|sp|P35250.3|RFC2_HUMAN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|1590811|gb|AAB09786.1| replication factor C, 40-kDa subunit [Homo sapiens]
gi|2914760|gb|AAC04860.1| replication factor C subunit 2 [Homo sapiens]
gi|30172692|gb|AAP22334.1| unknown [Homo sapiens]
gi|119590013|gb|EAW69607.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|119590014|gb|EAW69608.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|197692187|dbj|BAG70057.1| replication factor C 2 isoform 1 [Homo sapiens]
gi|208967280|dbj|BAG73654.1| replication factor C (activator 1) 2 [synthetic construct]
Length = 354
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 159 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 219 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 279 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 338
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 339 GLLARLC 345
>gi|197692437|dbj|BAG70182.1| replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 159 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 219 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 279 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 338
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 339 GLLARLC 345
>gi|124249278|ref|NP_001074372.1| replication factor C subunit 2 [Bos taurus]
gi|122131746|sp|Q05B83.1|RFC2_BOVIN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|115545402|gb|AAI22636.1| Replication factor C (activator 1) 2, 40kDa [Bos taurus]
gi|296472929|tpg|DAA15044.1| TPA: replication factor C subunit 2 [Bos taurus]
Length = 352
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD Q+L++++ + EKE + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +CV ++ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|114613995|ref|XP_001149874.1| PREDICTED: replication factor C subunit 2 isoform 4 [Pan
troglodytes]
gi|410213960|gb|JAA04199.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410213962|gb|JAA04200.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250164|gb|JAA13049.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250166|gb|JAA13050.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250168|gb|JAA13051.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250170|gb|JAA13052.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250172|gb|JAA13053.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
Length = 354
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 159 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 219 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 279 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 338
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 339 GLLARLC 345
>gi|417399418|gb|JAA46724.1| Putative replication factor c subunit 2 [Desmodus rotundus]
Length = 350
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/307 (74%), Positives = 267/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLG +
Sbjct: 35 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSAL 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 95 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + HT+DGL
Sbjct: 155 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLTVIEKEKVQHTDDGL 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV ++ +
Sbjct: 215 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNADIDGA 274
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ+S
Sbjct: 275 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMS 334
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 335 GLLARLC 341
>gi|426255304|ref|XP_004021294.1| PREDICTED: replication factor C subunit 2 [Ovis aries]
Length = 403
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 88 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 147
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 148 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 207
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 208 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLSVIEKEKVQYTDDGL 267
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +CV ++ ++
Sbjct: 268 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADIDEA 327
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDII NIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 328 YKILAHLWHLGYSPEDIISNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 387
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 388 GLLARLC 394
>gi|348517074|ref|XP_003446060.1| PREDICTED: replication factor C subunit 2-like [Oreochromis
niloticus]
Length = 357
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 268/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLG S
Sbjct: 42 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGTSM 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRR M
Sbjct: 102 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIM 161
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KLTD Q+L ++ E+ EKE +S ++DGL
Sbjct: 162 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILVRLQEVVEKERLSVSDDGL 221
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQSTH+GFG++ +E VFKVCDEPHPL VK ML +CV+GN+ ++
Sbjct: 222 EAIIFTAQGDMRQALNNLQSTHSGFGYINSENVFKVCDEPHPLMVKSMLGHCVDGNIDEA 281
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK++ L+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H+RI+EGVNSLLQ++
Sbjct: 282 YKVVEQLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRIAEGVNSLLQMA 341
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 342 GLLARLC 348
>gi|301769425|ref|XP_002920130.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Ailuropoda melanoleuca]
Length = 352
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 227/307 (73%), Positives = 270/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+F
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAF 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNN+QST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 217 EAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMVQHCVNANVDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|307179094|gb|EFN67566.1| Replication factor C subunit 2 [Camponotus floridanus]
Length = 349
Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 268/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ GN PNIII+GPPGVGKTTTILCLARILLGP+F
Sbjct: 39 IEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLARILLGPAF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQ+KV LP G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACNN+E+IIEPIQSRCAMLRY KLTDAQ+L+KV+E+CEKE +S+T+DG+
Sbjct: 159 EIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQILAKVLEVCEKEKLSYTDDGM 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST+NGF HV E VFKVCDEPHPL VKEML +C++G++ +
Sbjct: 219 EAIVFTAQGDMRQALNNLQSTYNGFNHVNGENVFKVCDEPHPLIVKEMLDDCIKGDVSKA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ H +K+GY+ EDI+ NIF+V K + E LKL ++EIG H+ I EG+NSLLQL
Sbjct: 279 CTVMDHFWKMGYSAEDIVSNIFKVCKNHAMDEKLKLIFVKEIGITHMGIVEGINSLLQLH 338
Query: 301 GLLARLC 307
L+A+LC
Sbjct: 339 ALVAKLC 345
>gi|355716182|gb|AES05529.1| replication factor C 2, 40kDa [Mustela putorius furo]
Length = 351
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 270/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLG +F
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSAF 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLAVLEQEKVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNN+QST +GFG + +E VFKVCDEPHPL VKEML +CV N+ ++
Sbjct: 217 EAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMLQHCVNANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL II+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEIIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|12847419|dbj|BAB27561.1| unnamed protein product [Mus musculus]
Length = 349
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 226/307 (73%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAV LNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVWRLNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 274 YKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 333
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 334 GLLARLC 340
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 226/307 (73%), Positives = 267/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 38 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAM 97
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 98 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 157
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL D Q++ +++E+ E+EN+ +NDGL
Sbjct: 158 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLRDEQIMMRLLEVVERENLVTSNDGL 217
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG++ +E VFKVCDEPHPL VK ML +CV N+ ++
Sbjct: 218 EAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEA 277
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKII L+ LGY+PEDIIGNIFRV KT +PE LKL I+EIG H++++EGVNSLLQ++
Sbjct: 278 YKIIEQLWALGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 337
Query: 301 GLLARLC 307
GLL RLC
Sbjct: 338 GLLGRLC 344
>gi|405964852|gb|EKC30294.1| Replication factor C subunit 2 [Crassostrea gigas]
Length = 344
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 226/307 (73%), Positives = 268/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T+ RL+VF GNVPN+II+GPPG GKTT+ILCLAR +LGPS+
Sbjct: 28 VEKYRPVKLHDIVGNEETISRLEVFGRDGNVPNVIIAGPPGTGKTTSILCLARAMLGPSY 87
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+DAVLE+NASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 88 RDAVLEMNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KLTDAQ+L +++E+CE E +S+T+DGL
Sbjct: 148 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDAQVLKRLLEVCEAEAVSYTDDGL 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST GFGHV +E VFKVCDEPHP+ +++ML +CV GN++++
Sbjct: 208 EAIVFTAQGDMRQALNNLQSTFQGFGHVNSENVFKVCDEPHPMLIQDMLQHCVNGNVEEA 267
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK + HL+KLGY+ +DII IFRV K +IPE LKL I+EIG H+RI+EGV SLLQ+S
Sbjct: 268 YKTMAHLWKLGYSADDIITIIFRVCKNQNIPEFLKLEFIKEIGYTHMRIAEGVQSLLQMS 327
Query: 301 GLLARLC 307
LLARLC
Sbjct: 328 ALLARLC 334
>gi|73957665|ref|XP_546916.2| PREDICTED: replication factor C subunit 2 isoform 1 [Canis lupus
familiaris]
Length = 352
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 226/307 (73%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNN+QST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 217 EAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum]
Length = 512
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 224/308 (72%), Positives = 272/308 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF +IVGNEDT RL V + GN+PN+II+GPPGVGKTTTILCLARILLGP+F
Sbjct: 197 IEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGPAF 256
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLPPGRHKI+ILDE DSMT+GAQQALRRTM
Sbjct: 257 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEVDSMTEGAQQALRRTM 316
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEK+IE IQSRCA+LRY++LTDAQ+L++VI++C++E++ +T DGL
Sbjct: 317 EIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQESVEYTQDGL 376
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST NGFG V + V KVCDEPHP+ +K+ML +CV G+++ +
Sbjct: 377 EAIVFTAQGDMRQALNNLQSTFNGFGVVNSTNVLKVCDEPHPMLIKDMLNSCVTGDVRKA 436
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+KI+ HL+ LGYA EDII NIF+V K +D+ E LKL+ I++IG H+RI +G+ SL+Q+S
Sbjct: 437 FKIVDHLWSLGYAAEDIIKNIFKVCKNMDMEESLKLAFIKQIGVTHMRIVDGLCSLVQMS 496
Query: 301 GLLARLCI 308
GL++RLC+
Sbjct: 497 GLISRLCM 504
>gi|91095205|ref|XP_967947.1| PREDICTED: similar to replication factor C subunit 2 [Tribolium
castaneum]
Length = 344
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 224/308 (72%), Positives = 272/308 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF +IVGNEDT RL V + GN+PN+II+GPPGVGKTTTILCLARILLGP+F
Sbjct: 29 IEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGPAF 88
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLPPGRHKI+ILDE DSMT+GAQQALRRTM
Sbjct: 89 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEVDSMTEGAQQALRRTM 148
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEK+IE IQSRCA+LRY++LTDAQ+L++VI++C++E++ +T DGL
Sbjct: 149 EIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQESVEYTQDGL 208
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST NGFG V + V KVCDEPHP+ +K+ML +CV G+++ +
Sbjct: 209 EAIVFTAQGDMRQALNNLQSTFNGFGVVNSTNVLKVCDEPHPMLIKDMLNSCVTGDVRKA 268
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+KI+ HL+ LGYA EDII NIF+V K +D+ E LKL+ I++IG H+RI +G+ SL+Q+S
Sbjct: 269 FKIVDHLWSLGYAAEDIIKNIFKVCKNMDMEESLKLAFIKQIGVTHMRIVDGLCSLVQMS 328
Query: 301 GLLARLCI 308
GL++RLC+
Sbjct: 329 GLISRLCM 336
>gi|291237115|ref|XP_002738484.1| PREDICTED: replication factor C (activator 1) 2-like [Saccoglossus
kowalevskii]
Length = 320
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/307 (73%), Positives = 266/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ S++VGNEDTV RL VF+ GNVPNIII+GPPG+GKTT+ILCLAR LLG +F
Sbjct: 8 VEKYRPQVLSEVVGNEDTVSRLAVFAKEGNVPNIIIAGPPGIGKTTSILCLARCLLGTAF 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 68 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KL+DAQ+L +++EI E+EN+++ + GL
Sbjct: 128 EIYSKTTRFALACNTSDKIIEPIQSRCAVLRYSKLSDAQVLKRLLEISERENVTYNDSGL 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FT+QGDMRQALNNLQST GFG VT E VFKVCDEPHPL +K ML CV+ N+ ++
Sbjct: 188 EAIIFTSQGDMRQALNNLQSTWQGFGDVTGENVFKVCDEPHPLVIKNMLEYCVDSNIDEA 247
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y+++ HL+ +GY+ EDII N+FRV KT I E LKL I+EIG HLRI+EGV +LLQ++
Sbjct: 248 YRLMRHLWMMGYSAEDIINNMFRVCKTAQIQEYLKLEYIKEIGYTHLRIAEGVQTLLQMA 307
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 308 GLLARLC 314
>gi|383858073|ref|XP_003704527.1| PREDICTED: replication factor C subunit 2-like [Megachile
rotundata]
Length = 351
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/307 (77%), Positives = 273/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ FSDIVGNEDTV RL VF+ +GN PNIII+GPPGVGKTTTILCLARILLGP+F
Sbjct: 39 IEKYRPQVFSDIVGNEDTVSRLSVFAKNGNCPNIIIAGPPGVGKTTTILCLARILLGPAF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASNDRGID VRNKIKMFAQ++V L G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KEAVLELNASNDRGIDVVRNKIKMFAQKRVNLDKGKHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACNNSEKIIEPIQSRCAMLRY KLTDAQ+L+K++E+C+KEN+S+T+DGL
Sbjct: 159 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYGKLTDAQVLAKILEVCQKENVSYTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST+NGFGHV +E VFKVCDEPHPL VKEML C + N+ +
Sbjct: 219 EAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLEFCTQSNIGKA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y+++ HL+K+GY+ ED+I NIFRV K L I E LKL ++EIG HL I +G++SLLQL+
Sbjct: 279 YQVLQHLWKMGYSAEDLISNIFRVCKNLPIDETLKLDFVREIGITHLGIVDGMSSLLQLN 338
Query: 301 GLLARLC 307
LLARLC
Sbjct: 339 SLLARLC 345
>gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 336
Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust.
Identities = 221/308 (71%), Positives = 273/308 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP F++IVGNE+T+ RL+VFS GNVPN+I+SGPPGVGKTTTILCL+RILLGPSF
Sbjct: 22 VEKYRPAKFNEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLSRILLGPSF 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+DAVLELNASNDRGID VRNKIKMFAQ+KVTLPPG+HK++ILDEADSMT+GAQQALRRTM
Sbjct: 82 RDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKHKVIILDEADSMTEGAQQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA++R+++L+DAQ+L+K+++IC++E++S+ DGL
Sbjct: 142 EIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLSDAQVLAKLLDICKQEDVSYAEDGL 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTAQGDMRQA+NNLQST GF HV +E VFKVCDEPHPL +K+ML +CVEG + +
Sbjct: 202 EALVFTAQGDMRQAINNLQSTFVGFSHVNSENVFKVCDEPHPLLIKDMLQHCVEGELDKA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+KLGYA EDII N+FRV K+ +PE LKL I+EIG +R +GV SLLQ++
Sbjct: 262 YKIMLHLWKLGYAAEDIISNVFRVCKSHTMPEYLKLEFIKEIGYTQMRTLQGVQSLLQMA 321
Query: 301 GLLARLCI 308
GLL+RLC+
Sbjct: 322 GLLSRLCM 329
>gi|440908469|gb|ELR58483.1| Replication factor C subunit 2 [Bos grunniens mutus]
Length = 354
Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/309 (73%), Positives = 269/309 (87%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKII--EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
EIYS TTRFALACN S+KII EPIQSRCA+LRY KLTD Q+L++++ + EKE + +T+D
Sbjct: 157 EIYSKTTRFALACNASDKIIGEEPIQSRCAVLRYTKLTDTQILARLLSVIEKEKVQYTDD 216
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +CV ++
Sbjct: 217 GLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADID 276
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
++YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ
Sbjct: 277 EAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQ 336
Query: 299 LSGLLARLC 307
++GLLARLC
Sbjct: 337 MAGLLARLC 345
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/307 (73%), Positives = 266/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAM 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KL D Q++ ++ E+ EKEN+ TNDGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG++ +E VFKVCDEPHPL VK ML +CV N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKII L+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 274 YKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNSLLQMA 333
Query: 301 GLLARLC 307
GLL RLC
Sbjct: 334 GLLGRLC 340
>gi|213983145|ref|NP_001135488.1| replication factor C (activator 1) 2, 40kDa [Xenopus (Silurana)
tropicalis]
gi|195539917|gb|AAI67884.1| Unknown (protein for MGC:135299) [Xenopus (Silurana) tropicalis]
Length = 345
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/301 (75%), Positives = 263/301 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP S+IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPTM 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++++ EKE + T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST GFG V + VFKVCDEPHPL VKEML +CV N+ ++
Sbjct: 214 EAIVFTAQGDMRQALNNLQSTFAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVNANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK++ HL+KLGY+PEDIIGNIFRV KT +PE LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 274 YKVVAHLWKLGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 333
Query: 301 G 301
G
Sbjct: 334 G 334
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/307 (73%), Positives = 266/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 38 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAM 97
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 98 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 157
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KL D Q++ ++ E+ EKEN+ TNDGL
Sbjct: 158 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGL 217
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG++ +E VFKVCDEPHPL VK ML +CV N+ ++
Sbjct: 218 EAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEA 277
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKII L+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 278 YKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNSLLQMA 337
Query: 301 GLLARLC 307
GLL RLC
Sbjct: 338 GLLGRLC 344
>gi|357614163|gb|EHJ68945.1| replication factor C subunit 2 [Danaus plexippus]
Length = 349
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/307 (72%), Positives = 268/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF+DIVGNEDTV RL VF+ +GN PNIII+GPPGVGKTTTILCLAR+LLGP+F
Sbjct: 35 IEKYRPQTFTDIVGNEDTVSRLAVFARTGNAPNIIIAGPPGVGKTTTILCLARVLLGPAF 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM
Sbjct: 95 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALA NNSEKIIEPIQSRCA+LRY KL+DAQ+L+KVIE+CEKE++S+T +G+
Sbjct: 155 ELYSSTTRFALAANNSEKIIEPIQSRCAVLRYTKLSDAQILAKVIEVCEKEDLSYTEEGV 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VFTAQGD+R ALNNLQST GF HV+ + VFKVCDEPHP+ VK ML C ++ ++
Sbjct: 215 NAVVFTAQGDLRAALNNLQSTAQGFAHVSPDNVFKVCDEPHPMLVKTMLEACTRKDIYEA 274
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK+I L +LGYA EDI+ N+FRV+KTL + E ++L +I++IG +R ++G+ S LQL+
Sbjct: 275 YKVIAKLCRLGYATEDILSNMFRVSKTLSVSEDVRLGLIKQIGLTQMRAADGLTSQLQLA 334
Query: 301 GLLARLC 307
LLAR+C
Sbjct: 335 ALLARMC 341
>gi|443732297|gb|ELU17070.1| hypothetical protein CAPTEDRAFT_192756 [Capitella teleta]
Length = 340
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/320 (70%), Positives = 275/320 (85%), Gaps = 7/320 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EK+RP D+VGNE+T+ RL+VF+ GNVPN+II+GPPG GKTT+ILCL+R LLG S+
Sbjct: 21 VEKFRPILLRDVVGNEETISRLQVFAEQGNVPNLIIAGPPGTGKTTSILCLSRALLGASY 80
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQ+KV+LP GRHK++ILDEADSMTDGAQQALRRTM
Sbjct: 81 KDAVLELNASNDRGIDVVRNKIKMFAQKKVSLPAGRHKVIILDEADSMTDGAQQALRRTM 140
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN+S+KIIEPIQSRCA+LRY+KL+DAQLL ++ E+C KE++S+T DG+
Sbjct: 141 EIYSKTTRFALACNSSDKIIEPIQSRCAVLRYSKLSDAQLLERLQEVCMKESVSYTEDGM 200
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FT+QGDMRQALNNLQST GFGHV +E VFKVCDEPHP+ VK+ML +C+ ++ +
Sbjct: 201 EAVIFTSQGDMRQALNNLQSTCQGFGHVNSENVFKVCDEPHPMLVKDMLQHCINSDIDAA 260
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGYAP+DI+G IFRVAKT D+PE LKL I+EIG H++I+EGV+SLLQ+S
Sbjct: 261 YKIMSHLWSLGYAPQDIVGIIFRVAKTHDMPEFLKLEFIKEIGFTHMKIAEGVDSLLQMS 320
Query: 301 GLLARLC-------IVGSKN 313
GLLARLC GSKN
Sbjct: 321 GLLARLCHKTVSPGTSGSKN 340
>gi|432959658|ref|XP_004086351.1| PREDICTED: replication factor C subunit 2-like [Oryzias latipes]
Length = 355
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/307 (73%), Positives = 268/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLG +
Sbjct: 40 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSAM 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRR M
Sbjct: 100 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIM 159
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD Q+LS++ E+ EKE +S ++DGL
Sbjct: 160 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEKERLSVSDDGL 219
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FT+QGDMRQALNNLQSTH+GFG++ +E VFKVCDEPHPL VK ML +CV+GN+ ++
Sbjct: 220 EAVIFTSQGDMRQALNNLQSTHSGFGYINSENVFKVCDEPHPLLVKSMLGHCVDGNIDEA 279
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK++ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG ++R++EGVNSLLQ++
Sbjct: 280 YKVVEHLWGLGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTNMRVAEGVNSLLQMA 339
Query: 301 GLLARLC 307
GLL RLC
Sbjct: 340 GLLGRLC 346
>gi|344289927|ref|XP_003416692.1| PREDICTED: replication factor C subunit 2-like [Loxodonta africana]
Length = 352
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 266/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++++ EKE + T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMDVIEKEKVQCTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ CV ++ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQRCVNADIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+ EDIIGNIFRV KT + E LKL I+EIG H++I EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSSEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIVEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>gi|346466437|gb|AEO33063.1| hypothetical protein [Amblyomma maculatum]
Length = 377
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 222/314 (70%), Positives = 277/314 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP FS+IVGNE+T+ RL++FS GNVPN+I+SGPPGVGKTTTILCLARILLGPSF
Sbjct: 62 VEKYRPAKFSEIVGNEETIARLEIFSREGNVPNVILSGPPGVGKTTTILCLARILLGPSF 121
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNASNDRGID VRNKIKMFAQ+KVTLPPG+HKI+ILDEADSMT+GAQQALRRTM
Sbjct: 122 REAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKHKIIILDEADSMTEGAQQALRRTM 181
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA++R+++LTDAQ+L+K+++IC++E+ S+ DGL
Sbjct: 182 EIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQILAKLLDICKREDASYVEDGL 241
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTAQGDMRQA+NNLQST GFGHV ++ VFKVCDEPHP +K+ML +CV+G + ++
Sbjct: 242 EALVFTAQGDMRQAINNLQSTVVGFGHVNSQNVFKVCDEPHPEQIKDMLQHCVDGQLDNA 301
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ H++KLGYA EDII NIFRV K+ D+ + +KL I+EIG +R +GV+SLLQ++
Sbjct: 302 YKIMLHMWKLGYAAEDIIVNIFRVCKSHDMRDDIKLEFIKEIGYTQMRTLQGVHSLLQMA 361
Query: 301 GLLARLCIVGSKNK 314
GLLARLC+ S+ K
Sbjct: 362 GLLARLCMKSSQCK 375
>gi|195012119|ref|XP_001983484.1| GH15919 [Drosophila grimshawi]
gi|193896966|gb|EDV95832.1| GH15919 [Drosophila grimshawi]
Length = 331
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/313 (73%), Positives = 266/313 (84%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VFS+ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFEEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQ+LRRTM
Sbjct: 79 KDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSLRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+C+ E + + DGL
Sbjct: 139 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVCQLEKLKYDEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +T VFKVCDEPHP+ +++ML +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITGTNVFKVCDEPHPMLLQDMLQHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L++LGYAPEDIIGNIFRV K L++ E LKL+ I+EIG H++I +G NSLLQL+
Sbjct: 259 YKILAKLWRLGYAPEDIIGNIFRVCKRLNVDEQLKLNFIREIGITHMKIVDGCNSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLARLCIV N
Sbjct: 319 SLLARLCIVAESN 331
>gi|427781667|gb|JAA56285.1| Putative replication factor c activator 1 2 [Rhipicephalus
pulchellus]
Length = 337
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/317 (70%), Positives = 279/317 (88%), Gaps = 1/317 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP F++IVGNE+T+ RL+VFS GNVPN+I+SGPPGVGKTTTILCLARILLGP+F
Sbjct: 22 VEKYRPVKFTEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLARILLGPAF 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNASNDRGID VRNKIKMFAQ+KVTLPPG+HKI+ILDEADSMT+GAQQALRRTM
Sbjct: 82 REAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKHKIIILDEADSMTEGAQQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA++R+++LTDAQ+L+K++++C++EN S++ DGL
Sbjct: 142 EIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQVLAKLLDVCQRENASYSEDGL 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTAQGDMRQA+NNLQST GFGHV ++ VFKVCDEPHP +K+ML CV+G + ++
Sbjct: 202 EALVFTAQGDMRQAINNLQSTVVGFGHVNSQNVFKVCDEPHPEQIKDMLQYCVDGQLDNA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ H++KLGYA EDII N+FRV K+ DI E +KL I+EIG +R +GV+SLLQ++
Sbjct: 262 YKIMLHMWKLGYAAEDIIVNVFRVCKSHDIREDIKLEFIKEIGYTQMRTLQGVHSLLQMA 321
Query: 301 GLLARLCIVGSKNKKTD 317
GLLARLC+ S+ K+D
Sbjct: 322 GLLARLCL-KSRQCKSD 337
>gi|338712627|ref|XP_001504577.3| PREDICTED: replication factor C subunit 2-like isoform 1 [Equus
caballus]
Length = 353
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/308 (74%), Positives = 267/308 (86%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKV-FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+EKYRP ++IVGNEDTV RL+V GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVSLCREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 96
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRT
Sbjct: 97 LKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRT 156
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ I EKEN+ +T+DG
Sbjct: 157 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTIIEKENVPYTDDG 216
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAIVFTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV ++
Sbjct: 217 LEAIVFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNADIDG 276
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I++GVNSLLQ+
Sbjct: 277 AYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHVKIADGVNSLLQM 336
Query: 300 SGLLARLC 307
+GLLARLC
Sbjct: 337 AGLLARLC 344
>gi|410898978|ref|XP_003962974.1| PREDICTED: replication factor C subunit 2-like [Takifugu rubripes]
Length = 350
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/307 (73%), Positives = 266/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +++VGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLG S
Sbjct: 35 VEKYRPLKLNEVVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGAST 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRR M
Sbjct: 95 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRIM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KLTD Q+L+++ E+ EKE +S ++DGL
Sbjct: 155 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQEVVEKEALSVSDDGL 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNNLQST+ GFG V +E VFKVCDEPHPL VK ML +CV+GN+ ++
Sbjct: 215 EAVIFTAQGDMRQALNNLQSTNAGFGFVNSENVFKVCDEPHPLLVKSMLGHCVDGNIDEA 274
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK++ L+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H+R++EGVNSLLQ++
Sbjct: 275 YKVVEQLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMA 334
Query: 301 GLLARLC 307
GLL RLC
Sbjct: 335 GLLGRLC 341
>gi|195135525|ref|XP_002012183.1| GI16571 [Drosophila mojavensis]
gi|193918447|gb|EDW17314.1| GI16571 [Drosophila mojavensis]
Length = 331
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/310 (73%), Positives = 266/310 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VFS+ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQ+LRRTM
Sbjct: 79 KDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSLRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLR++KL+DAQ+L+K+IE+C+ E + + DGL
Sbjct: 139 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSDAQVLAKLIEVCQLEQLKYDEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST GFG +T VFKVCDEPHP+ +++ML +C ++ +
Sbjct: 199 EAIVFTAQGDMRQALNNLQSTAQGFGEITGANVFKVCDEPHPMLLQDMLQHCASNDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L++LGYAPEDIIGNIFRV K L++ E LKL+ I+EIG H++I +G NSLLQL+
Sbjct: 259 YKILAKLWRLGYAPEDIIGNIFRVCKRLNVDEQLKLNFIREIGITHMKIVDGCNSLLQLT 318
Query: 301 GLLARLCIVG 310
LLARLC+
Sbjct: 319 SLLARLCMTA 328
>gi|195491632|ref|XP_002093645.1| GE20646 [Drosophila yakuba]
gi|194179746|gb|EDW93357.1| GE20646 [Drosophila yakuba]
Length = 331
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/313 (72%), Positives = 269/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E +++T DGL
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +TAE VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGY+PEDIIGNIFRV K ++I E +KL I+EIG H++I +G+NSLLQL+
Sbjct: 259 YKILAKLWKLGYSPEDIIGNIFRVCKRINIDEHMKLDFIREIGITHMKIVDGINSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLA+LCIV K+
Sbjct: 319 ALLAKLCIVAEKH 331
>gi|195375032|ref|XP_002046307.1| GJ12823 [Drosophila virilis]
gi|194153465|gb|EDW68649.1| GJ12823 [Drosophila virilis]
Length = 331
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/310 (73%), Positives = 265/310 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VFS+ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQ+LRRTM
Sbjct: 79 KDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSLRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+C+ E + + DGL
Sbjct: 139 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVCQLEKLKYDEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST GFG +T VFKVCDEPHP+ +++ML +C ++ +
Sbjct: 199 EAIVFTAQGDMRQALNNLQSTAQGFGDITGANVFKVCDEPHPMLLQDMLQHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L++LGYAPEDIIGNIFRV K L++ E LKL+ I+EIG H++I +G NSLLQL+
Sbjct: 259 YKILAKLWRLGYAPEDIIGNIFRVCKRLNVDEQLKLNFIREIGITHMKIVDGCNSLLQLT 318
Query: 301 GLLARLCIVG 310
LLARLC+
Sbjct: 319 SLLARLCMAA 328
>gi|47213597|emb|CAG07263.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/309 (72%), Positives = 267/309 (86%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLG S
Sbjct: 33 VEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGASM 92
Query: 61 KDAVLELNASNDR--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
KDAVLELNASNDR GID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRR
Sbjct: 93 KDAVLELNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRR 152
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIYS TTRFALACN S+KIIEPIQSRCA+LRY+KLTD Q+L+++ ++ EKE +S + D
Sbjct: 153 IMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQDVVEKEGLSVSED 212
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEA++FTAQGDMRQALNNLQST++GFG++ +E VFKVCDEPHPL VK ML +CV+GN+
Sbjct: 213 GLEAVIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLGHCVDGNVD 272
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
++YK++ HL+ LGY+PEDIIGNIFRV KT + E LKL ++EIG H+R++EGVNSLLQ
Sbjct: 273 EAYKVVEHLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFVKEIGYTHMRVAEGVNSLLQ 332
Query: 299 LSGLLARLC 307
++GLLARLC
Sbjct: 333 MAGLLARLC 341
>gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia]
gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia]
Length = 331
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/313 (72%), Positives = 268/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E +++T DGL
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +TAE VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGY+PEDII NIFRV K ++I E LKL I+EIG H++I +G+NSLLQL+
Sbjct: 259 YKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGMTHMKIIDGINSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLA+LCIV K+
Sbjct: 319 ALLAKLCIVAEKH 331
>gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans]
gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans]
Length = 331
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/313 (72%), Positives = 268/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E +++T DGL
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +TAE VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGY+PEDII NIFRV K ++I E LKL I+EIG H++I +G+NSLLQL+
Sbjct: 259 YKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGMTHMKIIDGINSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLA+LCIV K+
Sbjct: 319 ALLAKLCIVAEKH 331
>gi|195440776|ref|XP_002068216.1| GK10084 [Drosophila willistoni]
gi|194164301|gb|EDW79202.1| GK10084 [Drosophila willistoni]
Length = 333
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/313 (73%), Positives = 267/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 21 IEKYRPVKFDEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 80
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 81 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALRRTM 140
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLR+ KL+D+Q+++K+IE+ + EN+ + DGL
Sbjct: 141 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDSQVMAKLIEVSQLENLKYEEDGL 200
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST GFG +T VFKVCDEPHP+ +++ML +C ++ +
Sbjct: 201 EAIVFTAQGDMRQALNNLQSTAQGFGDITGPNVFKVCDEPHPMLLQDMLHHCAGNDIHKA 260
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGYAPEDIIGNIFRV K L+I E +KL+ I+EIG H++I +G NSLLQL+
Sbjct: 261 YKILAKLWKLGYAPEDIIGNIFRVCKRLNIDEQMKLNFIREIGITHMKIVDGNNSLLQLT 320
Query: 301 GLLARLCIVGSKN 313
GLLARLC V N
Sbjct: 321 GLLARLCQVAEAN 333
>gi|321454581|gb|EFX65746.1| hypothetical protein DAPPUDRAFT_303531 [Daphnia pulex]
Length = 343
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/307 (72%), Positives = 265/307 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP TF +IVGNED V RL+VF+ GN PNIII+GPPGVGKTTTILCLAR LLGP++
Sbjct: 26 VEKYRPTTFGEIVGNEDAVGRLEVFAREGNTPNIIIAGPPGVGKTTTILCLARTLLGPNY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GR KIVILDEADSMT+GAQQALRRTM
Sbjct: 86 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRQKIVILDEADSMTEGAQQALRRTM 145
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++S TTRFALACN S+KIIEPIQSRCAM+RY KLTDAQ+L K+IE+C+ E +SHT+DGL
Sbjct: 146 ELFSKTTRFALACNTSDKIIEPIQSRCAMIRYGKLTDAQILQKMIEVCKLEKVSHTDDGL 205
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGD+RQ LNNLQST GF HV +E VFKVCDEPHP+ +K+M+ +CV+G + ++
Sbjct: 206 EAIVFTAQGDLRQGLNNLQSTVQGFDHVNSENVFKVCDEPHPMLIKDMIDHCVKGKIDEA 265
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y I+ HLY+LGYA EDII ++FRV + IPE + L IQEIG H++I++G+ SLLQ+S
Sbjct: 266 YTIMSHLYELGYAAEDIISSVFRVCRNHTIPEYIMLEFIQEIGLTHMKIAQGMGSLLQMS 325
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 326 GLLARLC 332
>gi|194866271|ref|XP_001971841.1| GG14218 [Drosophila erecta]
gi|190653624|gb|EDV50867.1| GG14218 [Drosophila erecta]
Length = 331
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/313 (72%), Positives = 267/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E +++T DGL
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +TAE VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGY+PEDII NIFRV K ++I E LKL I+EIG H++I +G+NSLLQL+
Sbjct: 259 YKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLA+LCI K+
Sbjct: 319 ALLAKLCIAAEKH 331
>gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|1703054|sp|P53034.1|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40; AltName: Full=Replication
factor C subunit 4; Short=DmRfc4
gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster]
gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster]
gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct]
gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct]
Length = 331
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/313 (72%), Positives = 267/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E +++T DGL
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +TAE VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGY+PEDII NIFRV K ++I E LKL I+EIG H++I +G+NSLLQL+
Sbjct: 259 YKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLA+LCI K+
Sbjct: 319 ALLAKLCIAAEKH 331
>gi|194750805|ref|XP_001957720.1| GF23886 [Drosophila ananassae]
gi|190625002|gb|EDV40526.1| GF23886 [Drosophila ananassae]
Length = 331
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/313 (71%), Positives = 267/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLR+ KL+D+Q+L+K++E+ + E + +T+DGL
Sbjct: 139 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDSQVLAKLLEVSKWEKLHYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNLQST GFG +T E VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQALNNLQSTAQGFGDITMENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGY+PEDIIGNIFRV K ++I E LKL I+EIG H++I +G+NSLLQL+
Sbjct: 259 YKILSKLWKLGYSPEDIIGNIFRVCKRVNIDEQLKLDFIREIGITHMKIVDGINSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLA+LC+ +
Sbjct: 319 ALLAKLCMAAESH 331
>gi|340371349|ref|XP_003384208.1| PREDICTED: replication factor C subunit 2-like [Amphimedon
queenslandica]
Length = 346
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/311 (71%), Positives = 266/311 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ S+IVGNEDTV+RL+VFS GNVPNIII+GPPG GKTT+ILCLAR LLG S
Sbjct: 35 VEKYRPQKLSEIVGNEDTVKRLEVFSKEGNVPNIIIAGPPGTGKTTSILCLARTLLGASM 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRN+IKMFA QKVTLPPGRHKIVILDEADSM+DGAQQALRRTM
Sbjct: 95 KDAVLELNASNDRGIDVVRNRIKMFAHQKVTLPPGRHKIVILDEADSMSDGAQQALRRTM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN+SEKIIEPIQSRCAMLRY++L+DAQ+L +++E+C+KEN+ T+DGL
Sbjct: 155 EIYSKTTRFALACNDSEKIIEPIQSRCAMLRYSRLSDAQILERLLEVCDKENLIRTDDGL 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GF + +E VFKVCDEPHPL +KEML +C ++ +
Sbjct: 215 EAIIFTAQGDMRQALNNLQSTNDGFSFINSENVFKVCDEPHPLLIKEMLTHCNNSDIDSA 274
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ I+ L+ GY+ DII +IFRV KT + E LKL ++E+G H+RI +GV+SLLQLS
Sbjct: 275 FLILMTLWDKGYSAHDIITSIFRVCKTHSMSEYLKLEYLKEVGYTHMRIIKGVDSLLQLS 334
Query: 301 GLLARLCIVGS 311
GLLARLC+ S
Sbjct: 335 GLLARLCMKTS 345
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 213/307 (69%), Positives = 263/307 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + SD+VGNE+TV RL+VFS GNVPN+II+GPPG GKTT+ILCLAR +LG SF
Sbjct: 36 VEKYRPTSLSDVVGNEETVSRLEVFSREGNVPNVIIAGPPGTGKTTSILCLARTMLGASF 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLE+NASN+RGID VRNKIKMFAQ+KVTLP GRHKI+ILDEADSMT AQQA+RRTM
Sbjct: 96 KDAVLEMNASNERGIDVVRNKIKMFAQKKVTLPKGRHKIIILDEADSMTGAAQQAMRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++S TTRFALACN S+KIIEPIQSRCA+LRY++L+D+Q+L +++EIC EN+ H DGL
Sbjct: 156 EVFSKTTRFALACNASDKIIEPIQSRCAVLRYSRLSDSQILKRLLEICAAENVDHAEDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI++TAQGDMRQA+NNLQST+ GFG +T+E VFKVCDEPHP +K ML +CVE ++ +
Sbjct: 216 EAIIYTAQGDMRQAINNLQSTYAGFGSITSENVFKVCDEPHPQLIKSMLDHCVEADIDKA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y+I+HH+ +GY+ +DII NIFR KT + E +KL I+EIG H+RI+EGVNS+LQLS
Sbjct: 276 YEIMHHMSHMGYSADDIITNIFRSCKTHQMAEYVKLEFIKEIGMTHMRIAEGVNSILQLS 335
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 336 GLLARLC 342
>gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans]
Length = 333
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/307 (71%), Positives = 263/307 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNE+TV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG SF
Sbjct: 22 IEKYRPTKFDEIVGNEETVCRLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSF 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 82 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY NTTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+KVIE+C++E + + +GL
Sbjct: 142 EIYCNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKVIEVCQREELQYDEEGL 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQALNNL+ST GFG +++ VFKVCDEPHP+ +++ML C + ++ +
Sbjct: 202 EAIVFTAQGDMRQALNNLESTSKGFGKISSVNVFKVCDEPHPMLIQDMLQYCAQNDIHKA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+ LGYA EDIIGNIFRV K L I E +KL+ I+EIG H+++ EG+N+LLQL+
Sbjct: 262 YKILAKLWYLGYAAEDIIGNIFRVCKRLTIDENMKLNFIREIGVTHMKVIEGLNTLLQLT 321
Query: 301 GLLARLC 307
LLA+LC
Sbjct: 322 SLLAKLC 328
>gi|156379406|ref|XP_001631448.1| predicted protein [Nematostella vectensis]
gi|156218489|gb|EDO39385.1| predicted protein [Nematostella vectensis]
Length = 401
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/346 (65%), Positives = 266/346 (76%), Gaps = 34/346 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLG S
Sbjct: 56 VEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLARALLGVSL 115
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 116 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 175
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIE IQSRCA+LRY +LTDAQ+L++++EIC+KE + +DGL
Sbjct: 176 EIYSKTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGL 235
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST+ GFG V +E VFKVCDEPHPL +KEML +C G++ ++
Sbjct: 236 EAIIFTAEGDMRQAINNLQSTYYGFGMVNSENVFKVCDEPHPLLIKEMLKSCSVGDIDEA 295
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSII--------------------- 279
YK++ HL+ +GY+PEDII NIFRV KT I E LKL I
Sbjct: 296 YKVLSHLWNMGYSPEDIITNIFRVCKTAPIAEFLKLEFIKVQKDEHLMKDIFVCINSPFI 355
Query: 280 -------------QEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
+EIG H+RI EGVNSLLQLSGLLARLC +K
Sbjct: 356 VQCRALGAGRIGEEEIGYTHMRIVEGVNSLLQLSGLLARLCSKATK 401
>gi|335284257|ref|XP_003354558.1| PREDICTED: replication factor C subunit 2-like [Sus scrofa]
Length = 330
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/286 (75%), Positives = 251/286 (87%)
Query: 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81
L VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+ KDAVLELNASNDRGID VRNK
Sbjct: 36 LWVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNK 95
Query: 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141
IKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTMEIYS TTRFALACN S+KIIE
Sbjct: 96 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE 155
Query: 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201
PIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST
Sbjct: 156 PIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQST 215
Query: 202 HNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNI 261
+GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++YKI+ HL+ LGY+PEDIIGNI
Sbjct: 216 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDEAYKILAHLWHLGYSPEDIIGNI 275
Query: 262 FRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
FRV KT + E LKL I+EIG H+R++EGVNSLLQ++GLLARLC
Sbjct: 276 FRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMAGLLARLC 321
>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
[Ciona intestinalis]
Length = 336
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 212/316 (67%), Positives = 266/316 (84%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP SD+VGNE TV RL+VF++ GNVPNIII+GPPG GKTT+I+CLAR +LG S+
Sbjct: 20 VEKYRPTKLSDVVGNEATVSRLEVFANEGNVPNIIIAGPPGAGKTTSIMCLARTMLGASY 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNASNDRGID VRNKIKMFAQ+KVTLP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 80 DVAVLELNASNDRGIDVVRNKIKMFAQKKVTLPKGKHKIIILDEADSMTSGAQQALRRTM 139
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KL+D Q+LS+++E+ +KE + + + GL
Sbjct: 140 EIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEVIDKEGVRYDDSGL 199
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNNLQSTH GF + ++ VFKVCDEPHPL +K ML +CV+ ++ ++
Sbjct: 200 EALLFTAQGDMRQALNNLQSTHQGFSFINSDNVFKVCDEPHPLLLKTMLDHCVKADLDEA 259
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK I+HL+ +GY+P+DII NIFRV KT DIPE +KL I+ + H+RI +GVNSLLQLS
Sbjct: 260 YKTINHLWAMGYSPDDIITNIFRVLKTHDIPEYVKLEFIKLVAETHMRIVQGVNSLLQLS 319
Query: 301 GLLARLCIVGSKNKKT 316
L+AR+C + K +++
Sbjct: 320 ALVARMCKICMKEQES 335
>gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707, partial [Trichoplax
adhaerens]
Length = 315
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/313 (70%), Positives = 270/313 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VGNEDT+ RL+VF+ GN+PNI+I+GPPG GKTT+ILC+AR LLG S
Sbjct: 1 IEKYRPKQLDEVVGNEDTISRLEVFAKEGNLPNIVIAGPPGTGKTTSILCIARQLLGTSM 60
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQ+KVTLP G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 61 KDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPLGKHKIIILDEADSMTDGAQQALRRTM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN SEKIIEPIQSRCA+LR+ +L D+Q+L++++E+C +E++ TNDGL
Sbjct: 121 EIYSKTTRFALACNTSEKIIEPIQSRCAVLRFTRLNDSQILARLMEVCRQESVIATNDGL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNNLQST+ GFGHV +E VFKVCDEPHPL +K+M+ +E N+ ++
Sbjct: 181 EAVIFTAQGDMRQALNNLQSTYAGFGHVNSENVFKVCDEPHPLLIKQMIQASIECNIDEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YK++ HL++LGY+P DII NIFRV K D+PE LKL I+EIG H+RI EG++SLLQLS
Sbjct: 241 YKVLSHLWQLGYSPIDIITNIFRVCKNYDMPEYLKLEFIKEIGFTHMRIVEGIDSLLQLS 300
Query: 301 GLLARLCIVGSKN 313
GLL+R+CI KN
Sbjct: 301 GLLSRMCIKSLKN 313
>gi|334349834|ref|XP_003342265.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit
2-like, partial [Monodelphis domestica]
Length = 414
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/280 (76%), Positives = 246/280 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIIISGPPG GKTT+ILCLAR LLGPS
Sbjct: 79 VEKYRPMKLNEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTTSILCLARALLGPSL 138
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 139 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTM 198
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ I EKE + +T+DGL
Sbjct: 199 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTIIEKEKVEYTDDGL 258
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTA GDMRQALNNLQSTH+GFG + +E VFKVCDEPHPL VKEML +CV N+ ++
Sbjct: 259 EAIVFTAXGDMRQALNNLQSTHSGFGFINSENVFKVCDEPHPLLVKEMLQHCVSANIDEA 318
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQ 280
YKI+ HL++LGY+PED+IGNIFRV KT +PE LKL I+
Sbjct: 319 YKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIK 358
>gi|242010739|ref|XP_002426116.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510163|gb|EEB13378.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 338
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/313 (69%), Positives = 265/313 (84%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP TF D+VGN+D + RL F+ GNVPNI+I+GPPGVGKTTTILCLARILLGPSF
Sbjct: 22 IEKYRPVTFKDVVGNDDAIRRLAAFAEVGNVPNILIAGPPGVGKTTTILCLARILLGPSF 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASNDRGIDTVRNKIKMFAQQKVTLP G+HKI++LDEADSMTDGAQQALRRTM
Sbjct: 82 KEAVLELNASNDRGIDTVRNKIKMFAQQKVTLPKGKHKIIVLDEADSMTDGAQQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS TTRFA ACN+S KIIEP+QSRCA+LR+ KL D ++L K+++ICE E IS+TNDGL
Sbjct: 142 EMYSQTTRFAFACNDSSKIIEPLQSRCAVLRFTKLKDEEILKKLLQICESEQISYTNDGL 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++F+AQGD+RQALNNLQSTHNGF HV ++ VFKVCDEPHP+ + EML +C++ N +D+
Sbjct: 202 EAVIFSAQGDLRQALNNLQSTHNGFSHVNSDNVFKVCDEPHPVMIGEMLEHCMKANFQDA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI++HL+KLGY+ EDII IFR K + L L ++EI HLRI EG +SLLQLS
Sbjct: 262 YKILNHLWKLGYSAEDIISTIFRGTKLILGQVDLVLKFLKEISLTHLRIVEGTSSLLQLS 321
Query: 301 GLLARLCIVGSKN 313
LLA+LC + ++N
Sbjct: 322 SLLAKLCTIATEN 334
>gi|125977992|ref|XP_001353029.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|195172285|ref|XP_002026929.1| GL12737 [Drosophila persimilis]
gi|54641780|gb|EAL30530.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|194112697|gb|EDW34740.1| GL12737 [Drosophila persimilis]
Length = 331
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/309 (72%), Positives = 268/309 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F++IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPAKFNEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E++S+ +GL
Sbjct: 139 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVSKWESLSYDAEGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTAQGDMRQ LNNLQ+T G+G++T E VFKVCDEPHP ++EML +C ++ +
Sbjct: 199 EAVVFTAQGDMRQGLNNLQATAQGYGNITMENVFKVCDEPHPKLLEEMLQHCAVNDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+ LGY+PEDIIGNIFRV K L++ E +KL+ I+EIG H++I +G+N+LLQL+
Sbjct: 259 YKILAKLWSLGYSPEDIIGNIFRVCKRLNLDEQMKLNFIREIGITHMKIVDGINTLLQLT 318
Query: 301 GLLARLCIV 309
LLARLCIV
Sbjct: 319 ALLARLCIV 327
>gi|391337930|ref|XP_003743317.1| PREDICTED: replication factor C subunit 2-like [Metaseiulus
occidentalis]
Length = 322
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/308 (70%), Positives = 261/308 (84%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ F++IVGNE+TV RL+VFS GNVPNII+ GPPGVGKTTTILCLAR+LLG SF
Sbjct: 8 VEKYRPEKFTEIVGNEETVARLEVFSRQGNVPNIILCGPPGVGKTTTILCLARLLLGSSF 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNASNDRGID VRNKIKMFAQ KVTLPPGRHKI+ILDEADSMT+GAQQALRRTM
Sbjct: 68 REAVLELNASNDRGIDVVRNKIKMFAQTKVTLPPGRHKIIILDEADSMTEGAQQALRRTM 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S TTRFALACN S+KIIEPIQSRCA++R+ KL+DAQ+L+K+I+IC KEN+S+ DGL
Sbjct: 128 ENFSKTTRFALACNTSDKIIEPIQSRCAVIRFGKLSDAQVLAKIIDICRKENVSYAEDGL 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+V+TAQGDMRQA+ NLQSTH GFGHV + VFKVCDEPHPL +KEM+ C +G++ ++
Sbjct: 188 EALVYTAQGDMRQAIGNLQSTHVGFGHVNGKNVFKVCDEPHPLIIKEMIEYCAKGDIDEA 247
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKT-LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y + LY LGYA EDI+ N+FRV KT +PE LKL I+ IG H+ + +G+ SLLQL
Sbjct: 248 YARMQTLYSLGYAAEDIVSNMFRVTKTNQTLPEYLKLEFIKHIGLTHMTVLQGLGSLLQL 307
Query: 300 SGLLARLC 307
+ LLA LC
Sbjct: 308 TALLADLC 315
>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
Length = 335
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/312 (65%), Positives = 256/312 (82%), Gaps = 3/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +IVGN D VERL +++GNVPN+I SGPPG+GKTT+ILCLA LLGP++
Sbjct: 14 VEKYRPTKIDEIVGNADAVERLAAMAATGNVPNLIFSGPPGIGKTTSILCLAHTLLGPAY 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHKIV+LDEADSMT AQQA+RRTM
Sbjct: 74 KDAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVLLDEADSMTSAAQQAMRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN SEKIIEPIQSRCA++R+ +L+D ++L +V+++ EKE + + DGL
Sbjct: 134 EIYSNTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERVMKVVEKEEVPYVPDGL 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTA GDMRQALNNLQ+TH+GFG+V E VFKVCD+PHP + +ML +C+ GN+ D+
Sbjct: 194 EAVVFTADGDMRQALNNLQATHSGFGYVNQENVFKVCDQPHPQVISDMLTHCLRGNVDDA 253
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD---IPEPLKLSIIQEIGNVHLRISEGVNSLL 297
Y I LY G++ DIIG ++RV K + +PE +KL I+EIG +H+R+ +GVNSLL
Sbjct: 254 YDRIKFLYAAGFSAMDIIGTVYRVTKNFNSEAMPEFVKLEFIREIGFMHMRVGDGVNSLL 313
Query: 298 QLSGLLARLCIV 309
Q++GL A+LC V
Sbjct: 314 QMAGLCAKLCKV 325
>gi|167518313|ref|XP_001743497.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778596|gb|EDQ92211.1| predicted protein [Monosiga brevicollis MX1]
Length = 384
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 205/310 (66%), Positives = 256/310 (82%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVGNE TV RLKV + GN+PNIII+GPPG+GKTT+ILCLAR LLG S+
Sbjct: 68 VEKYRPQVLDDIVGNEATVSRLKVIAKDGNMPNIIIAGPPGIGKTTSILCLARTLLGKSY 127
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AV+E NAS+DRGID VRNKIKMFA++KV+LPPGRHKIVILDE DSMT AQQALRRT+
Sbjct: 128 KEAVMETNASDDRGIDVVRNKIKMFAKKKVSLPPGRHKIVILDEVDSMTPTAQQALRRTI 187
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFALACN SEKII+PIQSRC +LRY +LTDAQ+L ++I++C+ E I + GL
Sbjct: 188 ELYSNTTRFALACNTSEKIIDPIQSRCTILRYTRLTDAQVLKRLIDVCQAEKIVQLDSGL 247
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA+GDMRQA+NNLQSTH FG ++A+ VFKVCD+PHPL VK ++ C+EG++ +
Sbjct: 248 EALIFTAEGDMRQAINNLQSTHQSFGEISADKVFKVCDQPHPLLVKNVVKACLEGSIDVA 307
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y + L++LGYA DII IFRV K+ ++PE +KL I+EIG HLRI EG++S +QLS
Sbjct: 308 YDGLAELWRLGYAAIDIINVIFRVTKSYEMPEGIKLEYIKEIGRSHLRILEGLDSFMQLS 367
Query: 301 GLLARLCIVG 310
GL+ARLC G
Sbjct: 368 GLVARLCRYG 377
>gi|312379835|gb|EFR25995.1| hypothetical protein AND_08190 [Anopheles darlingi]
Length = 296
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/270 (75%), Positives = 243/270 (90%)
Query: 38 GPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH 97
GPPGVGKTTTILCLARILLGP+F++AVLELNASN+RGID VRNKIKMFAQQKVTLP GRH
Sbjct: 20 GPPGVGKTTTILCLARILLGPNFREAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 79
Query: 98 KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTD 157
KIVILDEADSMT+GAQQALRRTMEIYSNTTRFALACN SEKIIEPIQSRCAMLR++KL+D
Sbjct: 80 KIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSD 139
Query: 158 AQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVC 217
AQ+L+KV+E+C+KE +++ DGLEAIVFTAQGDMRQALNNLQST NGFGH+ VFKVC
Sbjct: 140 AQILAKVVEVCQKEVLTYDEDGLEAIVFTAQGDMRQALNNLQSTANGFGHINGANVFKVC 199
Query: 218 DEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLS 277
DEPHPL V++ML +CV+G++ +YKI+ L++LGYA EDIIGN+FRV + +D+ E LKL
Sbjct: 200 DEPHPLLVQDMLQHCVKGDIHKAYKIMSKLWRLGYAAEDIIGNVFRVCRRMDMNEKLKLY 259
Query: 278 IIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
I+EIG H++I +G+NSLLQ++GLLAR+C
Sbjct: 260 FIREIGETHMKIVDGLNSLLQMTGLLARMC 289
>gi|386783685|gb|AFJ24737.1| replication factor C subunit 2, partial [Schmidtea mediterranea]
Length = 341
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/308 (66%), Positives = 258/308 (83%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP SDIVGNE T++RL++FS GN+PN+II+GPPG GKTT+ILCLAR +LG ++
Sbjct: 25 LEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGETY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASNDRGI+ VRNKIK FA+ KV LP G HKI+ILDE DSMT+GAQQALRRTM
Sbjct: 85 KNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFA ACN+S KIIEPIQSRCAMLRY KL+D+++L++++EI + E++ +T+DGL
Sbjct: 145 EMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGL 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQA+NN++ TH GFG VT+E VFKVCDEPHPL +K ML NCVE ++
Sbjct: 205 EAIIFTAQGDMRQAINNVELTHKGFGSVTSENVFKVCDEPHPLLIKSMLENCVESKFNEA 264
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+K +++L GY+PEDIIG IFRV K D IPE LKL I+EIG VH+RI +G+ + LQL
Sbjct: 265 FKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLTTHLQL 324
Query: 300 SGLLARLC 307
+GL+ RLC
Sbjct: 325 AGLIGRLC 332
>gi|326427125|gb|EGD72695.1| replication factor C subunit 2 [Salpingoeca sp. ATCC 50818]
Length = 324
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/307 (64%), Positives = 253/307 (82%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ DIVGNE+TV+RLKV + +GN+PN+II+GPPG GKTT+ILCLAR LLG
Sbjct: 6 VEKYRPKVLKDIVGNEETVDRLKVIAEAGNMPNLIIAGPPGTGKTTSILCLARALLGEDV 65
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+K+AV+E NAS+DRGI+ VRN IKMF+++KVTLPPGRHKIVILDE DSMT AQQALRRT
Sbjct: 66 YKEAVMETNASDDRGIEVVRNNIKMFSRKKVTLPPGRHKIVILDEVDSMTSAAQQALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+NTTRFALACN SEKIIEPIQSRCA+LRY +L+DAQLL +++EIC++E + +G
Sbjct: 126 MEMYANTTRFALACNTSEKIIEPIQSRCAVLRYTRLSDAQLLKRLLEICDQEMVPKVEEG 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI+FTAQGDMRQA+NNLQST+ GFG V AE VFKVCD+PHPL V+ ++ C+EG++
Sbjct: 186 LEAIIFTAQGDMRQAINNLQSTYAGFGMVNAENVFKVCDQPHPLLVQAIVAACIEGDIDK 245
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+Y + L+ +GYAP DII FR+ K D+PE L L ++EIG H+R+ +GV+S +QL
Sbjct: 246 AYGGMQELWGMGYAPVDIITVFFRIVKQYDMPEYLTLEFVKEIGRTHIRVLDGVDSFMQL 305
Query: 300 SGLLARL 306
+GLLARL
Sbjct: 306 TGLLARL 312
>gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC
30864]
Length = 366
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/307 (64%), Positives = 251/307 (81%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGNEDTV RL++ + GN+PNIII+G PG GKTT+ILCLA LLGP++
Sbjct: 54 VEKYRPILLKDVVGNEDTVARLQIIAEEGNMPNIIIAGQPGTGKTTSILCLAHQLLGPAY 113
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRN IKMFAQ+KVTLPPGR K++ILDEADSMT+ AQQALRRTM
Sbjct: 114 KNAVLELNASDDRGIDVVRNDIKMFAQKKVTLPPGRQKVIILDEADSMTEAAQQALRRTM 173
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY +LTD Q+L +++EIC+ E + T +GL
Sbjct: 174 EIYSATTRFALACNMSDKIIEPIQSRCAILRYTRLTDEQILKRLLEICDAEKVPRTEEGL 233
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTAQGDMRQA+NNLQST +GFG V + VFK+CD+PHPL V+++L C GN+ ++
Sbjct: 234 TALIFTAQGDMRQAVNNLQSTFSGFGFVNLDNVFKICDQPHPLIVQKILEACKVGNIDEA 293
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y + L+ LGY+P DII IFRV K +PE L+L I+EIG H+RI++G+ +L+QL+
Sbjct: 294 YAQLESLWALGYSPLDIISTIFRVTKNFPLPEALQLGFIKEIGYTHMRIADGLGTLMQLT 353
Query: 301 GLLARLC 307
GL+AR+C
Sbjct: 354 GLIARMC 360
>gi|313217116|emb|CBY38291.1| unnamed protein product [Oikopleura dioica]
gi|313225063|emb|CBY20856.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/315 (65%), Positives = 253/315 (80%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP SDI GN++TVERL VF+ GN+PNIII+GPPG GKTT+ILCLAR +LG F
Sbjct: 12 VEKYRPTFMSDIAGNQETVERLAVFAKEGNLPNIIIAGPPGCGKTTSILCLARTMLGEHF 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+AVLELNASNDRGID VRNKIKMFAQ+K TLP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 72 NEAVLELNASNDRGIDVVRNKIKMFAQKKCTLPAGKHKIIILDEADSMTSGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACNNSEKIIEPIQSRCA+LR++KL+D Q+L+++ E+ + EN+ + GL
Sbjct: 132 EIYSKTTRFALACNNSEKIIEPIQSRCAVLRFSKLSDVQVLARITEVIKHENVDYDQKGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQ+TH+G G V ++ VFKVCDEPHPL + +ML C+E ++
Sbjct: 192 EAILFTAQGDMRQALNNLQATHSGLGVVNSDNVFKVCDEPHPLMISKMLDFCLERKTNEA 251
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
II LY GYA EDII +FRV+KT PE +KL I++IG H+RI EG +L+QL
Sbjct: 252 TGIIRQLYNYGYACEDIITTVFRVSKTHKSPELIKLEWIKQIGLAHMRIIEGTTTLVQLI 311
Query: 301 GLLARLCIVGSKNKK 315
GL+++L ++ K KK
Sbjct: 312 GLVSKLILICHKAKK 326
>gi|262401171|gb|ACY66488.1| replication factor C 2 (40kD) isoform 2 [Scylla paramamosain]
Length = 332
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/309 (68%), Positives = 250/309 (80%), Gaps = 17/309 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP TF DIVGNE+TV RL+VF+ GNVPNIII+GP GVGKTTTILCLAR LLGPSF
Sbjct: 33 IEKYRPTTFPDIVGNEETVARLEVFAKQGNVPNIIIAGPLGVGKTTTILCLARALLGPSF 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AV+ELNASNDRGID VRNKIKMFAQQKVTLP G+HKI+ILDEADSMTDGAQQALRRTM
Sbjct: 93 REAVMELNASNDRGIDVVRNKIKMFAQQKVTLPKGKHKIIILDEADSMTDGAQQALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN+SEKIIEPIQSRCAMLRY+KLTDAQ+L+K+ +C KE++S+T+DGL
Sbjct: 153 EIYSNTTRFALACNSSEKIIEPIQSRCAMLRYSKLTDAQILNKLQHVCSKEDLSYTDDGL 212
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST GFGHV++E VFKVCDEPHP+ VKEM+ +C + +
Sbjct: 213 EAILFTAQGDMRQALNNLQSTAQGFGHVSSENVFKVCDEPHPVMVKEMIQHCTKATL--- 269
Query: 241 YKIIHHLYKLG--------YAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
K+I + G +P + +R + LKL I+EIG H+RI +G
Sbjct: 270 MKLIRYWLIFGSWVMPLRTSSPLSLEYARYRYGRF------LKLEFIKEIGYTHMRIVQG 323
Query: 293 VNSLLQLSG 301
+SLLQLSG
Sbjct: 324 TSSLLQLSG 332
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 253/307 (82%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ +IVGN + V RL+V + GN+PN+I++GPPG GKTT+ILCLA LLGP++
Sbjct: 22 LEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLGPTY 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 82 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++RY++++D +LS++ +CEKE +++ ++G+
Sbjct: 142 EIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEKEGVTYNDEGM 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA GDMRQALNNLQ+TH+GFG ++ E VFKVCD+PHP V ++ NC + ++ +
Sbjct: 202 EALIFTADGDMRQALNNLQATHSGFGFISQENVFKVCDQPHPKLVMSIIENCSKADLDAA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y + L LGY+ DII +FRV + DIPE LKL ++E+G H+RI+EGVNS LQLS
Sbjct: 262 YAGLKGLVDLGYSSHDIITTVFRVVRNADIPEFLKLEYLREVGFCHMRIAEGVNSRLQLS 321
Query: 301 GLLARLC 307
G+LA+LC
Sbjct: 322 GMLAKLC 328
>gi|256077102|ref|XP_002574847.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|353229166|emb|CCD75337.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 468
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/307 (65%), Positives = 253/307 (82%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T+ RL VF+ GN+PNIII+GPPG GKTT+ILCLAR LL ++
Sbjct: 156 VEKYRPIELEDIVGNENTICRLSVFARDGNLPNIIIAGPPGCGKTTSILCLARTLLKSAY 215
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGI+ VR KIKMFAQ+KV+LP GR KI+ILDEADSMT+GAQQALRR M
Sbjct: 216 KEAVLELNASNERGIEVVRTKIKMFAQKKVSLPEGRQKIIILDEADSMTEGAQQALRRIM 275
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS TTRFALACN+S K+IEPIQSRCA+LRY +LT AQ++++++E+ E +S+T +GL
Sbjct: 276 ELYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTSAQVMARLLEVSRFEGVSYTEEGL 335
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTA GDMRQALNNLQSTH GFG V+++ VFKVCDEPHP+ +K+++ +C +G + +
Sbjct: 336 EAIVFTADGDMRQALNNLQSTHEGFGMVSSDNVFKVCDEPHPMLIKQLIDHCSKGELSAA 395
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+KI+ HL+ LGY+ EDII FRV K + E LKL I+E+G HLRISEG+ + LQL+
Sbjct: 396 HKILRHLWTLGYSAEDIITITFRVIKNHPMEEYLKLGFIKEVGLTHLRISEGLGTYLQLA 455
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 456 GLLARLC 462
>gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum]
Length = 364
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/308 (63%), Positives = 251/308 (81%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ D+VGN+ ++RL +F+ GN+PNI+ISGPPG GKTT+I LAR LLG
Sbjct: 49 LEKYRPQKLQDVVGNKLAIQRLGMFAKQGNLPNIVISGPPGCGKTTSIWALARELLGTQI 108
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++A LELNAS+DRGID VRNKIK FAQ KV+LP GRHKI+ILDEADSMT+GAQQALRRTM
Sbjct: 109 REACLELNASDDRGIDVVRNKIKSFAQTKVSLPEGRHKIIILDEADSMTEGAQQALRRTM 168
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFAL+CN S+KIIEPIQSRCA+LR++KL D ++ ++++++C E + + G+
Sbjct: 169 EIYSKTTRFALSCNQSDKIIEPIQSRCAILRFSKLKDEEIATRLLQVCTYEQVVYDESGI 228
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++FTAQGDMRQALNNLQ T GF VTA+ VFKVCDEPHP +K+ML CV + ++
Sbjct: 229 DALIFTAQGDMRQALNNLQCTVAGFKQVTADNVFKVCDEPHPEMIKKMLELCVREKVNEA 288
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I+ HLYK+GY+PEDI+ N+FRV K+ +IPE LK+ I+EIGN H+R+ EGV SLLQLS
Sbjct: 289 TEIMQHLYKMGYSPEDILSNMFRVCKSANIPEYLKMEYIKEIGNCHVRVVEGVASLLQLS 348
Query: 301 GLLARLCI 308
GL+ARLC+
Sbjct: 349 GLIARLCL 356
>gi|56754473|gb|AAW25424.1| SJCHGC05804 protein [Schistosoma japonicum]
Length = 335
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/307 (64%), Positives = 252/307 (82%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T+ RL VFS GN+PNIII+GPPG GKTT+ILCLAR +L ++
Sbjct: 23 VEKYRPIELKDIVGNENTISRLSVFSREGNLPNIIIAGPPGCGKTTSILCLARTMLKDAY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLE+NASN+RGI+ VR KIKMFAQ+KV+LP GR K++ILDEADSMT+GAQQALRR M
Sbjct: 83 KDAVLEMNASNERGIEVVRTKIKMFAQKKVSLPEGRQKMIILDEADSMTEGAQQALRRIM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS TTRFALACN+S K+IEPIQSRCA+LRY +LT AQ++++++E+ E +S+T +GL
Sbjct: 143 ELYSRTTRFALACNDSSKLIEPIQSRCAVLRYTRLTSAQIMARLLEVSHSEGVSYTEEGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTA GDMRQALNNLQST+ GFG V+++ VFKVCDEPHP+ +K+++ +C G + +
Sbjct: 203 EAIVFTADGDMRQALNNLQSTYQGFGMVSSDNVFKVCDEPHPMLIKQLIDHCSNGELSAA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+KI+ HL+ LGY+ EDII FRV K + E LKL I+E+G HLRISEG+ + +QL+
Sbjct: 263 HKILRHLWTLGYSAEDIITITFRVIKNHPMEEYLKLGFIKEVGLTHLRISEGLGTYVQLA 322
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 323 GLLARLC 329
>gi|440797689|gb|ELR18770.1| DNA replication factor C complex subunit 2, putative [Acanthamoeba
castellanii str. Neff]
Length = 346
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/313 (64%), Positives = 250/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGN +TV RL++ +S GN+PN+I++GPPG GKTT+ILCLA LLGP++
Sbjct: 25 VEKYRPKDIKDIVGNVETVSRLQIIASEGNMPNLILAGPPGTGKTTSILCLAHALLGPNY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRGID VRNKIKMFAQ+KV L PGR K+VILDEADSMT AQQALRRTM
Sbjct: 85 REGVLELNASDDRGIDVVRNKIKMFAQKKVNLAPGRQKVVILDEADSMTSAAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE-NISHTNDG 179
EIYSNTTRFALACN S KIIEPIQSRCA+LRY +L D Q+L +++E+ + E NI HT+DG
Sbjct: 145 EIYSNTTRFALACNVSSKIIEPIQSRCAILRYTRLGDEQVLKRLMEVIKAEGNIPHTDDG 204
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEA++FTA+GDMRQALNNLQSTH G+G V E VFKVCD+PHPL +K ++ C G +
Sbjct: 205 LEAVLFTAEGDMRQALNNLQSTHAGYGFVNRENVFKVCDQPHPLLIKSIMNECEAGELDT 264
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + + L+ LGY+ DIIG +FRV KT+ I E LKL I+EIG H+R +G+NSLLQL
Sbjct: 265 ALQQLSSLWGLGYSAVDIIGTMFRVLKTMSIQEYLKLEFIREIGFAHMRAVKGMNSLLQL 324
Query: 300 SGLLARLCIVGSK 312
L+ARLC V +K
Sbjct: 325 KALIARLCAVKTK 337
>gi|13435948|gb|AAH04812.1| Rfc2 protein, partial [Mus musculus]
Length = 272
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/263 (74%), Positives = 234/263 (88%)
Query: 45 TTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDE 104
TT+ILCLAR LLGP+ KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDE
Sbjct: 1 TTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDE 60
Query: 105 ADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164
ADSMTDGAQQALRRTMEIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L+++
Sbjct: 61 ADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRL 120
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA 224
+ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL
Sbjct: 121 MNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLL 180
Query: 225 VKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
VKEM+ +CV+ N+ ++YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG
Sbjct: 181 VKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGY 240
Query: 285 VHLRISEGVNSLLQLSGLLARLC 307
H++++EGVNSLLQ++GLLARLC
Sbjct: 241 THMKVAEGVNSLLQMAGLLARLC 263
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/314 (62%), Positives = 254/314 (80%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DIVGN+D V RL+V + GN+PN+I SGPPG GKTT+IL LA LLGP+F
Sbjct: 19 VEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTSILALAHELLGPNF 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+V+LDEADSMT GAQQALRRTM
Sbjct: 79 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVLLDEADSMTAGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D+++L +++ + E E + + +GL
Sbjct: 139 EIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRVVEAEKVPYVPEGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTA GDMRQALNNLQ+T +GF V + VF+VCD+PHPL ++++ +C+ GN+ D+
Sbjct: 199 EAVVFTADGDMRQALNNLQATFSGFQFVNQDNVFRVCDQPHPLLAQQIIKHCIAGNIDDA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y + LY +GY+ DII +FRV K ++ E LKL I+E+G H+RI++GV +LLQLS
Sbjct: 259 YTGLKQLYDMGYSATDIITTLFRVVKNYEMVEFLKLEFIREVGFAHMRIADGVGTLLQLS 318
Query: 301 GLLARLCIVGSKNK 314
GLLA+LC V + K
Sbjct: 319 GLLAKLCKVRERCK 332
>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
Length = 340
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/307 (64%), Positives = 249/307 (81%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ ++IVGN + V RL+V + GN+PN+I+SGPPG GKTT+ILCLA LLGP++
Sbjct: 26 LEKYRPQFINEIVGNTEAVARLQVIAEEGNMPNVILSGPPGTGKTTSILCLAHQLLGPNY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 86 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTM 145
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S KIIEPIQSRCA++RY ++ D +L+++ + EKE +++ + G+
Sbjct: 146 EIYSGTTRFALACNMSSKIIEPIQSRCAIVRYTRIPDEDILARMRLVAEKEGVTYNDAGM 205
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA GDMRQALNN+Q+TH+GFG ++ E VFKVCD+PHP V ++ C G++ +
Sbjct: 206 EAVIFTADGDMRQALNNMQATHSGFGFISQENVFKVCDQPHPKLVMGIIAKCKAGDLDAA 265
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y + L +GY+P DII +FRV + DIPE LKL ++EIG H+R+SEGVNS LQLS
Sbjct: 266 YAGMKELQDMGYSPMDIITTVFRVVRNADIPEFLKLEYLREIGFCHMRVSEGVNSRLQLS 325
Query: 301 GLLARLC 307
GLLA+LC
Sbjct: 326 GLLAKLC 332
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/308 (64%), Positives = 250/308 (81%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P+IIISG PG+GKTT++LCLAR LLG ++
Sbjct: 37 VEKYRPAFLDDIVGNTETIERLKIIAKDGNMPHIIISGMPGIGKTTSVLCLARQLLGDAY 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHKIVILDEADSMT GAQQALRRTM
Sbjct: 97 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKIVILDEADSMTSGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E + +++DGL
Sbjct: 157 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEQVRYSDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 217 AALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDAPHPIKVQAMLKACHEGNVDAA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I+H L++LGY+ DII +FRV KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 277 LDILHELWRLGYSSHDIISTMFRVTKTMPGLSEHAKLEFIREIGFTHMKILEGVQTLLQL 336
Query: 300 SGLLARLC 307
SG LARLC
Sbjct: 337 SGCLARLC 344
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/310 (64%), Positives = 250/310 (80%), Gaps = 1/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN DTVERLKV + GNVP+IIISG PG+GKTT+I CLA LLG S+
Sbjct: 28 VEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGESY 87
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 88 KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY+KL DA++L ++ E+CE E++ H + GL
Sbjct: 148 EIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLKDAEVLKRLKELCEMEDVKHNDAGL 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQSTH+GFG V+ + VFK+CD+PHP+ V+ M+ C +G + D+
Sbjct: 208 SALIFTAEGDMRQAINNLQSTHSGFGFVSQDNVFKICDQPHPIVVRHMIKACQKGEIDDA 267
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I+ L+ GY+ DI+ +FRV K + ++PE LKL I+EIG H+RI EGV +L+QL
Sbjct: 268 LARINELWDQGYSAVDIVTTVFRVTKGMEELPEVLKLDYIREIGWTHMRILEGVGTLVQL 327
Query: 300 SGLLARLCIV 309
++ARLC V
Sbjct: 328 GAMVARLCRV 337
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/313 (63%), Positives = 252/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ D+VGN DT+ERLK+ + GN P+IIISG PG+GKTT+I CLA LLG +
Sbjct: 27 VEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDGY 86
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 87 KEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTM 146
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+NTTRFALACN S KIIEPIQSRCA+LRY+KL D ++L +++EICE E + ++N+GL
Sbjct: 147 EIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEMEKVEYSNEGL 206
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA+GDMRQA+NNLQST +GFG V+ + VFKVCD+PHP+ V+ M+ C++G+++ +
Sbjct: 207 EALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITVQAMIRACLKGDIEGA 266
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DI+ +FRV KT D IPE KL I+EIG H+RI EGV +L+QL
Sbjct: 267 MDKLDELWDQGYSAVDIVVTVFRVVKTFDEIPEYTKLEYIKEIGWTHMRILEGVGTLIQL 326
Query: 300 SGLLARLCIVGSK 312
GL+ARLC + K
Sbjct: 327 GGLMARLCKMNHK 339
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/308 (64%), Positives = 249/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT D+VGN +T+ERLKV + GN P+IIISG PG+GKTT+I CLA +LG ++
Sbjct: 20 VEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQMLGEAY 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KD VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 80 KDGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 139
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY KL D ++L +++EICE E + + +DGL
Sbjct: 140 EIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEMEQVQYNDDGL 199
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQSTH+GFG V+ + VFKVCD+PHP+ V+ M+ C++G++ +
Sbjct: 200 TALIFTSEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPILVQAMIRACMKGDINTT 259
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ GY+ DI+ IFRV KT D +PE KL I+EIG H+RI EGV +L+QL
Sbjct: 260 MEKLTELWDQGYSAVDIVVTIFRVVKTFDELPEYTKLEYIKEIGFTHMRILEGVGTLVQL 319
Query: 300 SGLLARLC 307
GL ARLC
Sbjct: 320 GGLAARLC 327
>gi|299756140|ref|XP_001829123.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
gi|298411540|gb|EAU92758.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
Length = 323
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/308 (64%), Positives = 250/308 (81%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVGN DT+ERLKV + GN P++IISG PG+GKTT+I CLA LLG ++
Sbjct: 5 VEKYRPQVLDDIVGNTDTIERLKVIARDGNCPHLIISGMPGIGKTTSIHCLAHQLLGDAY 64
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 65 KEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIIILDEADSMTPGAQQALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRF LACN S KIIEPIQSRCA+LRY KL D ++L +++EICE E + + +DGL
Sbjct: 125 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEVLKRLLEICEMEKVQYNDDGL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQSTH+GFG V+A+ VFKVCD+PHP+ V+ M+ C++G + +
Sbjct: 185 TALIFTAEGDMRQAINNLQSTHSGFGFVSADNVFKVCDQPHPIVVQSMIRACLKGEIDPA 244
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +H L+ GY+ DI+ +FRV KT D+PE KL I+EIG H+RI EGV +L+QL
Sbjct: 245 LEKLHELWDQGYSAVDIVVTLFRVVKTFDDMPEYTKLEYIKEIGFTHMRILEGVGTLIQL 304
Query: 300 SGLLARLC 307
+GL+ARLC
Sbjct: 305 AGLVARLC 312
>gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
Length = 334
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/317 (60%), Positives = 254/317 (80%), Gaps = 3/317 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN+D V+RL +S+GN+PN+I +GPPG+GKTT++LCLA LLGPS+
Sbjct: 13 VEKYRPTKIDDIVGNKDAVDRLTAIASTGNMPNLIFTGPPGIGKTTSVLCLAHTLLGPSY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHKI++LDEADSMT AQQALRRTM
Sbjct: 73 KDAVLELNASDDRGIDAVRNKIKMFAQKKVTLPPGRHKIILLDEADSMTSAAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKIIEPIQSRCA++R+ +L+D ++L +++++ E+E + + DGL
Sbjct: 133 ELYSSTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERIVKVVEREEVPYVPDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTA GDMRQALNN+Q+TH+GFG V E VFKVCD+PHP V + + C+ G++ +
Sbjct: 193 EAVVFTADGDMRQALNNVQATHSGFGFVNQENVFKVCDQPHPQIVVDCVACCLRGDVDHA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD---IPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + L+ G++ D+IG ++RV K D +PE +KL +I+E+G H+RI +GVNSLL
Sbjct: 253 HDKMKSLHDAGFSAADVIGTVYRVVKNFDAESMPEFVKLEMIREVGFTHMRIGDGVNSLL 312
Query: 298 QLSGLLARLCIVGSKNK 314
QL G+ A++C V + K
Sbjct: 313 QLGGMCAKMCQVVERAK 329
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/308 (64%), Positives = 250/308 (81%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ D+VGN DT+ERLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 26 VEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDAY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLP GRHKIVILDEADSMT GAQQALRRTM
Sbjct: 86 KEGVLELNASDERGIDVVRNKIKAFAQKKVTLPSGRHKIVILDEADSMTAGAQQALRRTM 145
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+NTTRFALACN S KIIEPIQSRCA+LRY+KL D ++L +++EICE E + + ++GL
Sbjct: 146 EIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDTEVLKRLLEICEMEKVQYNDEGL 205
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA+GDMRQA+NNLQST +GFG V+ + VFKVCD+PHP+ V+ M+ +C++G++ +
Sbjct: 206 EALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITVQAMIRSCLKGDIDAA 265
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ GY+ DI+ IFRV KT D IPE KL I+EIG H+RI EGV +L+QL
Sbjct: 266 MDRLNELWDQGYSAVDIVVTIFRVVKTFDEIPEYTKLEFIKEIGWTHMRILEGVGTLVQL 325
Query: 300 SGLLARLC 307
GL+ARLC
Sbjct: 326 GGLMARLC 333
>gi|384248690|gb|EIE22173.1| DNA replication factor C complex subunit 2 [Coccomyxa
subellipsoidea C-169]
Length = 366
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EK+RP DIVGN D V+RL+V S GN+PNII++GPPG GKTT+ILCLAR LLG ++
Sbjct: 46 VEKFRPLYVKDIVGNTDAVDRLQVISEEGNMPNIILAGPPGTGKTTSILCLARALLGQNY 105
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 106 KEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTM 165
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++RY KL+D ++L +++ +C E++ + ++GL
Sbjct: 166 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRYTKLSDKEVLERLLVVCRSESVPYVDEGL 225
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA GDMRQALNNLQ+T+ GFG +T E+VFKVCD+PHPL + E++ NC N+ +
Sbjct: 226 GAVIFTADGDMRQALNNLQATYYGFGMITPEHVFKVCDQPHPLLISEIVKNCTAANIDGA 285
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKT-LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y + + +GY+ DII +FRV K +PE LKL I+E+G H+RI +GVNS LQL
Sbjct: 286 YDGMKKICDMGYSSMDIIQTLFRVVKNDPKLPEFLKLEFIREVGFCHMRIEDGVNSRLQL 345
Query: 300 SGLLARLC 307
SGLLA+LC
Sbjct: 346 SGLLAKLC 353
>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
dendrobatidis JAM81]
Length = 340
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/309 (64%), Positives = 248/309 (80%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP SDIVGNE+TV RL++ + GN+PNIII+G PG+GKTT+ILCLA LLG ++
Sbjct: 23 IEKYRPLVLSDIVGNEETVARLQIIAQEGNMPNIIIAGSPGIGKTTSILCLAHELLGSAY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS+DRGI+ VRN+IKMFAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 83 KEGVLELNASDDRGIEVVRNRIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY +LTD QLL +++EICE EN+ HT +GL
Sbjct: 143 EIYSNTTRFALACNLSSKIIEPIQSRCAILRYTRLTDLQLLRRLLEICEMENVKHTPEGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FTA GDMRQA+NNLQST++GFG V E VFKVCD+PHP+ V++++ CV ++
Sbjct: 203 SAIIFTADGDMRQAVNNLQSTNSGFGFVNPENVFKVCDQPHPVLVQKIVDACVRTEVEIG 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ + L+ GY+ DII +FRV K+ + E +KL ++EIG H+R+ EG SLLQL
Sbjct: 263 IQGMTELWDKGYSALDIITTLFRVVKSFSMAEYIKLEFVKEIGFAHMRLLEGCQSLLQLH 322
Query: 301 GLLARLCIV 309
GL+ +LC V
Sbjct: 323 GLIGKLCKV 331
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 256/308 (83%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+VGN +T+ERLKV + GN P+II+SG PG+GKTT+I CLA LLG ++
Sbjct: 24 VEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSGLPGIGKTTSIHCLAHQLLGDAY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNK+K FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 84 KEGVLELNASDERGIDVVRNKVKAFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI++NTTRFALACN S KIIEPIQSRCA+LRY KL DA++L +++EICE E + + +DGL
Sbjct: 144 EIFANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDAEVLRRLLEICEMEGVKYNDDGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQST +GFG V+A+ VFKVCD+PHP+ V+ M+ +C++G+++++
Sbjct: 204 TALIFTAEGDMRQAINNLQSTFSGFGFVSADNVFKVCDQPHPVVVQAMIRSCLKGDVENA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ GY+ DI+ IFRV KT D IPE KL I+EIG H+RI EGV++L+QL
Sbjct: 264 MEKLNELWNHGYSAVDIVVTIFRVVKTFDEIPEYTKLEYIKEIGFTHMRILEGVSTLIQL 323
Query: 300 SGLLARLC 307
GL+ARLC
Sbjct: 324 GGLMARLC 331
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/308 (63%), Positives = 250/308 (81%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T+ERLKV + GN P+IIISG PG+GKTT+IL LA LLG ++
Sbjct: 64 VEKYRPAVLDDIVGNEETIERLKVIARDGNCPHIIISGQPGIGKTTSILALAHALLGKAY 123
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRN+IK FAQ+KVTLP GRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 124 KEGVLELNASDERGIDVVRNRIKTFAQKKVTLPAGRHKIIILDEADSMTPGAQQALRRTM 183
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY +L+D QLL +++EIC+ E + +++D L
Sbjct: 184 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYARLSDKQLLKRIVEICDMEQVKYSDDAL 243
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+++FT+ GDMRQA+NNLQST++GFG V++E VFKVCD+PHP+ V +M+ C +G++ S
Sbjct: 244 ASLIFTSDGDMRQAINNLQSTYSGFGFVSSEAVFKVCDQPHPVTVNKMIEACAKGDIDVS 303
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+++ L+ GY+ DI+ IFRV K+ D+ PE KL I+EIG H+RI EGV++L QL
Sbjct: 304 MEMLEKLWHQGYSAVDIVTTIFRVTKSTDVLPEYTKLEFIKEIGFSHMRILEGVSTLTQL 363
Query: 300 SGLLARLC 307
SGLLARLC
Sbjct: 364 SGLLARLC 371
>gi|393244589|gb|EJD52101.1| replication factor C subunit 4 [Auricularia delicata TFB-10046 SS5]
Length = 340
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/313 (63%), Positives = 253/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN+DT++RLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 22 VEKYRPLKLDDVVGNKDTIDRLKVIAREGNCPHIIISGLPGIGKTTSIHCLAHELLGDAY 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIKMFAQ+KVTLP GRHK VILDEADSMT GAQQALRRTM
Sbjct: 82 KEGVLELNASDERGIDVVRNKIKMFAQKKVTLPKGRHKFVILDEADSMTSGAQQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY KL + +++++++EIC++E++++ DG+
Sbjct: 142 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYAKLRNEEIVARLLEICKEESVTYNQDGI 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTA+GDMRQA+NNLQST +GFG V A VFKVCD+PHP V++M+ +C EGN+ D+
Sbjct: 202 EALVFTAEGDMRQAINNLQSTFSGFGFVNAANVFKVCDQPHPTMVQKMMRSCKEGNINDA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L++ GY+ DI+ IFRV K D +PE LKL I+EIG H++I EGV +L+QL
Sbjct: 262 MDHLTALWRQGYSAVDIVVTIFRVVKVFDELPEYLKLEFIKEIGFTHMKILEGVGTLVQL 321
Query: 300 SGLLARLCIVGSK 312
GLLARLC + K
Sbjct: 322 GGLLARLCKISMK 334
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/308 (63%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DI GN DT+ERLKV + GN P+IIISG PG+GKTT+ILCLA LLG ++
Sbjct: 24 VEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLGDAY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FA KVTLP GRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 84 KEGVLELNASDERGIDVVRNKIKTFANTKVTLPAGRHKIIILDEADSMTAGAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACNNS KIIEPIQSRCA+LRY KL D ++L +++EI EN+ + DGL
Sbjct: 144 EIYSNTTRFALACNNSSKIIEPIQSRCAILRYGKLKDQEVLKRLVEIATAENVKYAEDGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQST +GFG V+AE VFKVCD+PHP+ ++++L C +G++ D+
Sbjct: 204 AALIFTSEGDMRQAINNLQSTVSGFGFVSAESVFKVCDQPHPVVIQKLLSACEKGDLSDA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ HL++ GY+ DI+G + +V K++D + E LKL I+EIG H+RI EGV++L+QL
Sbjct: 264 LDQLEHLWEQGYSALDIVGTLLKVVKSMDRMSEFLKLEFIKEIGFTHMRILEGVSTLVQL 323
Query: 300 SGLLARLC 307
GLL+RLC
Sbjct: 324 GGLLSRLC 331
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/308 (63%), Positives = 251/308 (81%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN + V RL++ + GN+PNII++GPPG GKTT+ILCLA LLGP+F
Sbjct: 25 VEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELLGPNF 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNAS+DRGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT GAQQALRRTM
Sbjct: 85 REAVLELNASDDRGIDVVRNKIKMFAQQKVTLPLGRHKIVILDEADSMTSGAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN S KIIEPIQSRCA++RY+KL+D +LL +++ +C++E ++HT DGL
Sbjct: 145 EIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLHVCQEEGVAHTPDGL 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTA GDMRQALNN+Q+T NGFG V+ ++VF+VCD+PHP+ V ++ +C++ + D+
Sbjct: 205 EAVVFTADGDMRQALNNVQATANGFGLVSQDHVFRVCDQPHPVLVSSVVRHCLDARIDDA 264
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y+ + L +GY+ DII +FRV + + E LKL I++IG H+R+ +GVNS LQL
Sbjct: 265 YEGLRALCDMGYSASDIITILFRVVRNFTGMNEYLKLEYIKQIGFCHMRVGDGVNSRLQL 324
Query: 300 SGLLARLC 307
SGLLA LC
Sbjct: 325 SGLLAELC 332
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/308 (63%), Positives = 249/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ D+VGN +T+ERLK+ + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 27 VEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDAY 86
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGR KIVILDEADSMT GAQQALRRTM
Sbjct: 87 KEGVLELNASDERGIDVVRNKIKTFAQKKVTLPPGRQKIVILDEADSMTSGAQQALRRTM 146
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+NTTRFALACN S KIIEPIQSRCA+LRY KL D ++L +++EIC+ E + + +DGL
Sbjct: 147 EIYANTTRFALACNMSNKIIEPIQSRCAILRYTKLRDTEVLQRLLEICQAEQVKYNDDGL 206
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQSTH+GFG V+ + VFKVCD+PHP+ V+ M+ C++GN+ +
Sbjct: 207 TALIFTAEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPIVVQAMIGACLKGNIDGA 266
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ GY+ DI+ IFRV KT D IPE KL I+EIG H+RI EGV +L+QL
Sbjct: 267 MEKLNELWDQGYSAVDIVVTIFRVVKTYDEIPEYTKLEYIKEIGFTHMRILEGVGTLVQL 326
Query: 300 SGLLARLC 307
GL++RLC
Sbjct: 327 GGLMSRLC 334
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 246/309 (79%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGP++
Sbjct: 16 VEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 76 KEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++LTD ++L +++ + + E + + +GL
Sbjct: 136 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+TH+GF V + VFKVCD+PHPL VK ++ N +EG D+
Sbjct: 196 EAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDA 255
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S LQL
Sbjct: 256 CTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLC 315
Query: 301 GLLARLCIV 309
GLLA+L +V
Sbjct: 316 GLLAKLSMV 324
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 246/309 (79%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGP++
Sbjct: 18 VEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 78 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFALACN S KIIEPIQSRCA++R+++L+D ++L ++I + + E + + +GL
Sbjct: 138 EIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKVPYVPEGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T++GF V E VFKVCD+PHPL VK M+ + +EG D+
Sbjct: 198 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRHVMEGKYDDA 257
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S LQL
Sbjct: 258 CSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLC 317
Query: 301 GLLARLCIV 309
GLLA+L +V
Sbjct: 318 GLLAKLALV 326
>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/309 (63%), Positives = 245/309 (79%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN D V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGPS+
Sbjct: 18 VEKYRPNRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPSY 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNAS+DRG+D VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 78 REAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTTGAQQALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 138 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYVPEGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK M+ N ++G ++
Sbjct: 198 EAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDGKFDEA 257
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FRV K D+PE LKL +++E G H+RI +GV S LQLS
Sbjct: 258 CAALKQLYDLGYSPTDIITTLFRVVKNYDMPEYLKLEMLKETGFAHMRICDGVGSFLQLS 317
Query: 301 GLLARLCIV 309
GLLA+ +V
Sbjct: 318 GLLAKFALV 326
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/309 (62%), Positives = 244/309 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN D V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGPS+
Sbjct: 16 VEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPSY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+DAVLELNAS+DRG+D VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 76 RDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 136 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYAPEGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF + E VFKVCD+PHPL VK M+ N ++G ++
Sbjct: 196 EAIIFTADGDMRQALNNLQATFSGFRFINQENVFKVCDQPHPLHVKNMVKNVLDGKFDEA 255
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FRV K D+ E LKL +++E G H+RI +GV S LQLS
Sbjct: 256 CSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKETGFAHMRICDGVGSFLQLS 315
Query: 301 GLLARLCIV 309
GLLA+ +V
Sbjct: 316 GLLAKFALV 324
>gi|226294707|gb|EEH50127.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb18]
Length = 352
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/313 (61%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG S+
Sbjct: 31 VEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDSY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ+L ++ +IC+ EN+ H+ DG+
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQILKRLTQICQAENVKHSEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++F+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EGN+ +
Sbjct: 211 AALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGNIDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI EGV +L+QL
Sbjct: 271 LDTLNELWDLGYSSHDIISTMFRVTKTIPTLSEHAKLEFIKEIGFAHMRILEGVQTLVQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCRINMK 343
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/315 (62%), Positives = 249/315 (79%), Gaps = 4/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ +DIVGNE+ VERLKV + GNVPNII+SGPPG GKTT++ LAR LLG
Sbjct: 13 VEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVWALARELLGDKV 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS++RGID VRN+IK FAQ +VTLP GRHKI+ILDEADSMT+GAQQALRRTM
Sbjct: 73 KDAVLELNASDERGIDVVRNRIKTFAQTRVTLPEGRHKIIILDEADSMTEGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN SEKIIEPIQSRCA+LRY KLT A+L+S+V+E+ + E+++H + GL
Sbjct: 133 EIYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLTAAELMSRVVEVAKAEDVNHDDGGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQ+T N + V E V KVCDEPHP + +ML CV+G ++
Sbjct: 193 EAILFTAQGDMRQALNNLQATVNAYEQVNKENVLKVCDEPHPDLMIKMLAYCVDGKFFEA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIP----EPLKLSIIQEIGNVHLRISEGVNSL 296
KI+H ++LG++ +DI+ +FRV KT+++ E L+ I+EI H+RI +G++S
Sbjct: 253 SKIVHEFHRLGFSSDDIVSTLFRVVKTVELSKRVNEQLRQEFIREIAMCHMRIIQGLSSK 312
Query: 297 LQLSGLLARLCIVGS 311
LQLS L+A LC V +
Sbjct: 313 LQLSRLVADLCRVSA 327
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN+DT++RLKV + GN P+++ISG PG+GKTT++LCLAR LLG ++
Sbjct: 23 VEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGDAY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RG+D VRNKIK FAQ+KV+LPPGRHKI+ILDEADSMT AQQALRRTM
Sbjct: 83 KEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRHKIIILDEADSMTPAAQQALRRTM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRF ACN S KIIEPIQSRCA+LRY K+ D Q+L +++EICE E + ++++GL
Sbjct: 143 EIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVRDEQILKRLLEICEMEAVEYSDEGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FT +GDMRQA+NNLQST G G V+ + VFKVCD+PHP ++ +LL+C +G++ D+
Sbjct: 203 AAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPFLIRALLLSCKKGDIDDA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + ++ GYA DI+ +FRV KTLD IPE KL I+EIG H+RI EGV +++QL
Sbjct: 263 MEKLDEIWSKGYAAVDIVTTLFRVVKTLDGIPEATKLKFIKEIGWTHMRILEGVATVVQL 322
Query: 300 SGLLARLC 307
GL+ARLC
Sbjct: 323 GGLIARLC 330
>gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi]
gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi]
Length = 326
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/319 (61%), Positives = 253/319 (79%), Gaps = 7/319 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ S++VGNE ++RL F+ GN PNIIISGPPG GKTT++ LAR +LG
Sbjct: 8 VEKYRPKMLSEVVGNEFVIQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGDRL 67
Query: 61 KDAVLELNASNDR-------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 113
K+A LELNAS+DR GID VRNKIK FAQ KVTLPPGRHKI+ILDE DSMT+GAQ
Sbjct: 68 KNACLELNASDDREIFFKFSGIDVVRNKIKTFAQSKVTLPPGRHKIIILDEVDSMTEGAQ 127
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
QALRRTMEIYS TTRF LACN S K+IEPIQSRCA+LR++KL++ Q++ ++++ICE E +
Sbjct: 128 QALRRTMEIYSKTTRFTLACNQSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQICEAEKV 187
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
++ + G++A+VFTAQGDMRQALNNLQ T GF +VTA+ VF+VCDEPHP V +++ +CV
Sbjct: 188 TYDDSGIDALVFTAQGDMRQALNNLQCTVVGFNNVTADNVFRVCDEPHPQMVMQIIEHCV 247
Query: 234 EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
G + ++ +I+H LY++GY+ EDI+ N+ RV KTL IPE LKL ++EIG H+RI EGV
Sbjct: 248 HGKVIEAGEIVHSLYRMGYSAEDILNNMVRVCKTLSIPEYLKLEYVKEIGLCHVRIVEGV 307
Query: 294 NSLLQLSGLLARLCIVGSK 312
+SLLQLS L+AR+C+ S+
Sbjct: 308 SSLLQLSALVARMCLKQSQ 326
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/313 (62%), Positives = 250/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ D+VGN DT++RLKV + GN P+IIISG PG+GKTT+I CLA LLGP++
Sbjct: 22 VEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGPAY 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 82 KEGVLELNASDERGIDVVRNKIKNFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRF LACN S KIIEPIQSRCA+LRY KL D ++L +++EICE E + + +DGL
Sbjct: 142 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYGKLKDQEILKRLLEICEAEKVEYNDDGL 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQST +GFG V+ + VFKVCD+PHP+ ++ ++ C++G++ +
Sbjct: 202 TALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITIQTIIRCCLKGDIDGA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DI+ +FRV K D IPE KL I+EIG H+RI EGV +++QL
Sbjct: 262 MVKLTELWDQGYSAVDIVVTLFRVVKNFDEIPEYTKLEYIKEIGFTHMRILEGVGTIIQL 321
Query: 300 SGLLARLCIVGSK 312
SGLLARLC + +K
Sbjct: 322 SGLLARLCKMNTK 334
>gi|378730119|gb|EHY56578.1| replication factor C subunit 4 [Exophiala dermatitidis NIH/UT8656]
Length = 352
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/313 (62%), Positives = 247/313 (78%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 32 VEKYRPVYLDDIVGNSETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARTLLGDAY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 92 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++I E E + ++ DGL
Sbjct: 152 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVQRLLQIIEAEKVQYSEDGL 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 212 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKIDSA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI EGV S LQL
Sbjct: 272 VDTLKELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGFTHMRILEGVQSFLQL 331
Query: 300 SGLLARLCIVGSK 312
SG LA+LC + K
Sbjct: 332 SGCLAKLCRINMK 344
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/308 (63%), Positives = 249/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 16 VEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLGDAY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 76 KEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIVILDEADSMTGGAQQALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRF LACN S KIIEPIQSRCA+LRY KL D ++L++++EIC++EN+ + +DGL
Sbjct: 136 EIYSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEVLARLLEICKEENVQYNDDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT +GDMRQA+NNLQSTH+GFG V+ E VFKVCD+PHP+ V+ ++ C + + +
Sbjct: 196 TALIFTCEGDMRQAINNLQSTHSGFGFVSGENVFKVCDQPHPVIVQAIIRACHKCEVDSA 255
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +H L+ GY+ DI+ +FRVAKT D +PE KL I+EIG H+R+ EGV +L+QL
Sbjct: 256 LEKLHELWDQGYSAVDIVVTLFRVAKTFDELPEYTKLEYIKEIGFTHMRVLEGVGTLMQL 315
Query: 300 SGLLARLC 307
+GL+ARLC
Sbjct: 316 AGLVARLC 323
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/309 (62%), Positives = 243/309 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN D V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGPS+
Sbjct: 16 VEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPSY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+DAVLELNAS+DRG+D VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 76 RDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 136 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYAPEGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF + E VFKVCD+PHPL VK M+ N ++G +
Sbjct: 196 EAIIFTADGDMRQALNNLQATFSGFRFINQENVFKVCDQPHPLHVKNMVKNVLDGKFDEP 255
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FRV K D+ E LKL +++E G H+RI +GV S LQLS
Sbjct: 256 CSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKETGFAHMRICDGVGSFLQLS 315
Query: 301 GLLARLCIV 309
GLLA+ +V
Sbjct: 316 GLLAKFALV 324
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 244/308 (79%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGP++
Sbjct: 19 VEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRT+
Sbjct: 79 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTI 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFALACN S KIIEPIQSRCA++R+++L+D Q+L +++ + E EN+ + +GL
Sbjct: 139 EIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVVEAENVPYVPEGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK ++ N +E D+
Sbjct: 199 EAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNIVRNVLESKFDDA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S LQL
Sbjct: 259 CHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLC 318
Query: 301 GLLARLCI 308
GLLA+L I
Sbjct: 319 GLLAKLSI 326
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/309 (62%), Positives = 244/309 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN D V RL+V + GN+PN+I+SGPPG GKTT+IL LA +LGPS+
Sbjct: 19 VEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGPSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRG+D VRNKIKMFAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 79 REGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 139 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAAEKVPYVPEGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK M+ N ++G ++
Sbjct: 199 EAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDGKFDEA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FRV K D+ E LKL +++E G H+RI +GV S LQLS
Sbjct: 259 CSGLKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLELLKETGFAHMRICDGVGSFLQLS 318
Query: 301 GLLARLCIV 309
GLLA+ IV
Sbjct: 319 GLLAKFAIV 327
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/309 (62%), Positives = 245/309 (79%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DIVGN+D V RL+V + GN+PN+I++GPPG GKTT+IL LA LLGP+
Sbjct: 15 VEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNS 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 75 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGQHKIVILDEADSMTSGAQQALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 135 EIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVGAEQVPYVPEGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+TH+GF V E VFKVCD+PHPL VK M+ +EG D+
Sbjct: 195 EAIIFTADGDMRQALNNLQATHSGFHFVNQENVFKVCDQPHPLHVKNMVRQVLEGKFDDA 254
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ HLY +GY+P DII +FR+ K D+ E +KL ++E G H+RI +GV S LQL
Sbjct: 255 CSGLKHLYDMGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICDGVGSYLQLC 314
Query: 301 GLLARLCIV 309
GLLA+L +V
Sbjct: 315 GLLAKLALV 323
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/313 (62%), Positives = 251/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN DT+ERLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 23 VEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQLLGDAY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS+DRGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 83 KEGVLELNASDDRGIDVVRNKIKTFAQKKVTLPPGRHKIIILDEADSMTPGAQQALRRTM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRF LACN S KIIEPIQSRCA+LRY KL D ++L +++EICE E + + +DGL
Sbjct: 143 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEMEKVEYNDDGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQST++GFG V+ + VFKVCD+PHP+ V+ + C++G++ +
Sbjct: 203 TALIFTSEGDMRQAINNLQSTYSGFGFVSGDNVFKVCDQPHPIIVQATIRACLKGDIDGA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L++ GY+ DI+ IFRV K D +PE KL I+EIG H+RI EGV +L+QL
Sbjct: 263 IEKVNQLWEQGYSAVDIVVTIFRVVKIFDEMPEYTKLEYIKEIGFTHMRILEGVGTLIQL 322
Query: 300 SGLLARLCIVGSK 312
+GL+ARLC + SK
Sbjct: 323 AGLVARLCKMNSK 335
>gi|400600989|gb|EJP68657.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 355
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 251/316 (79%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARELLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK++ILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLIILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNMSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNIDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEYSKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + K+
Sbjct: 336 SGCVARLCKINMDPKR 351
>gi|389627572|ref|XP_003711439.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|351643771|gb|EHA51632.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|440468926|gb|ELQ38053.1| replication factor C subunit 4 [Magnaporthe oryzae Y34]
gi|440480570|gb|ELQ61229.1| replication factor C subunit 4 [Magnaporthe oryzae P131]
Length = 358
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 251/316 (79%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 37 VEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 97 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E + +++DGL
Sbjct: 157 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEKVEYSDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST++GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 217 AALVFSAEGDMRQAINNLQSTYSGFGFVSGDNVFKVVDSPHPIKVQAMLKACHEGNVDSA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 277 LDALRELWGLGYSSHDIISTMFKVTKTIQTLSEHTKLEFIKEIGFAHMKILEGVQTLLQL 336
Query: 300 SGLLARLCIVGSKNKK 315
SG + RLC + KK
Sbjct: 337 SGCVVRLCKLNMDPKK 352
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/307 (62%), Positives = 248/307 (80%), Gaps = 2/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVGN +T++RLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 26 VEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDAY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 86 KEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 145
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+NTTRFALACN S KIIEPIQSRCA+LRY KL D ++L +++EICE E + + +DGL
Sbjct: 146 EIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVQYNDDGL 205
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQSTH+GFG ++ + VFKVCD+PHP+ V+ ++ C++ ++ +
Sbjct: 206 TALIFTSEGDMRQAINNLQSTHSGFGFISGDNVFKVCDQPHPIIVQSIIRACIKSDIDGA 265
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ ++ L+ GY+ DI+ +FRV KT IPE KL I+EIG H+RI EGV +L+QL
Sbjct: 266 MEKLNELWDQGYSAVDIVVTVFRVVKT--IPEYTKLEYIKEIGWTHMRILEGVGTLIQLG 323
Query: 301 GLLARLC 307
GL+ARLC
Sbjct: 324 GLMARLC 330
>gi|410984624|ref|XP_003998627.1| PREDICTED: replication factor C subunit 2 isoform 2 [Felis catus]
Length = 318
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/307 (64%), Positives = 238/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP S+IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+F
Sbjct: 37 VEKYRPVKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAF 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASND SMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASND----------------------------------SMTDGAQQALRRTM 122
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 123 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLMTVLEQEKVQYTDDGL 182
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 183 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 242
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 243 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 302
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 303 GLLARLC 309
>gi|353227396|emb|CCA77906.1| probable RFC4-DNA replication factor C, 37 kDa subunit
[Piriformospora indica DSM 11827]
Length = 334
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/308 (62%), Positives = 253/308 (82%), Gaps = 2/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ D+VGNE+T++RLKV + GN P+IIISG PG+GKTT+I CLA LLGP++
Sbjct: 17 VEKYRPQVLDDVVGNEETIDRLKVIAKEGNCPHIIISGLPGIGKTTSIHCLAHQLLGPAY 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VR+KIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 77 KEGVLELNASDERGIDVVRSKIKSFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 136
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRFALACN S KIIEPIQSRCA+LR+ KL+DAQL+ +++EI + + + DGL
Sbjct: 137 EIFSNTTRFALACNQSNKIIEPIQSRCAILRFTKLSDAQLMKRLLEILGLQ-VQYNEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++FT++GDMRQA+NNLQSTH+GFG V + VFKVCD+PHPL V++++ CV+GN+ +
Sbjct: 196 KALIFTSEGDMRQAINNLQSTHSGFGFVNGDNVFKVCDQPHPLIVQDLIRYCVKGNIDRA 255
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ GYA DI+ +FRV K+ D +PE KL I+E+G VH+R+ EGV +L+QL
Sbjct: 256 MTQLNKLWDDGYAAVDIVVTVFRVVKSFDELPEYTKLEYIKEVGFVHMRVLEGVGTLVQL 315
Query: 300 SGLLARLC 307
+GL+ARLC
Sbjct: 316 AGLVARLC 323
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/309 (62%), Positives = 244/309 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGP++
Sbjct: 18 VEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 78 REAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + + E + + +GL
Sbjct: 138 EIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQ LNNLQ+T +GF V VFKVCD+PHPL VK M+ N +EGN ++
Sbjct: 198 EAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEA 257
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FR+ K+ D+ E LKL ++E G H+RI +GV S LQ+
Sbjct: 258 CSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMC 317
Query: 301 GLLARLCIV 309
GLLA+ +V
Sbjct: 318 GLLAKFALV 326
>gi|340522843|gb|EGR53076.1| replication factor C subunit 4 [Trichoderma reesei QM6a]
Length = 357
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/308 (62%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTD Q++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDTLRELWDLGYSSHDIISTMFKVTKTMPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 336 SGCVARLC 343
>gi|295669055|ref|XP_002795076.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285769|gb|EEH41335.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 352
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG S+
Sbjct: 31 VEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDSY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ+L ++ +IC+ EN+ H+ DG+
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQILKRLTQICKTENVKHSEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++F+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG++ +
Sbjct: 211 AALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGDIDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI EGV +L+QL
Sbjct: 271 LDTLNELWDLGYSSHDIISTMFRVTKTIPMLSEHAKLEFIKEIGFAHMRILEGVQTLVQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCRINMK 343
>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
Length = 335
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/316 (61%), Positives = 246/316 (77%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN D V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGPS+
Sbjct: 20 VEKYRPTRVADVVGNSDAVARLQVIARDGNMPNLILSGPPGTGKTTSILSLAHELLGPSY 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNAS+DRG+D VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 80 REAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTM 139
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 140 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYVPEGL 199
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK M+ N ++G ++
Sbjct: 200 EAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDGKFDEA 259
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FRV K D+ E LKL +++E G H+RI +GV S LQLS
Sbjct: 260 CSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFAHMRICDGVGSFLQLS 319
Query: 301 GLLARLCIVGSKNKKT 316
GLLA+ +V K +
Sbjct: 320 GLLAKFALVRETAKAS 335
>gi|336266754|ref|XP_003348144.1| hypothetical protein SMAC_03989 [Sordaria macrospora k-hell]
gi|380091080|emb|CCC11286.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 357
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/316 (61%), Positives = 250/316 (79%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDAY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI+ VR +IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDAA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDGLRELWNLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 336 SGCVARLCKLNMDPKK 351
>gi|348679159|gb|EGZ18976.1| hypothetical protein PHYSODRAFT_332696 [Phytophthora sojae]
Length = 326
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/308 (63%), Positives = 244/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +D+VGN DTV L+ + +GN+ N+I+SGPPG GKTT+ILCLAR LLG S
Sbjct: 10 VEKYRPRVLADVVGNRDTVASLQAMAQAGNMTNLILSGPPGTGKTTSILCLARELLGASM 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGIDTVR+KIKMFAQQKVTLPPGRHKIVILDEADSMT AQQALRRTM
Sbjct: 70 KQAVLELNASDDRGIDTVRSKIKMFAQQKVTLPPGRHKIVILDEADSMTAAAQQALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRFALACNNS KIIEPIQSRCA+LRY +L D LL +++ +C++E + + +GL
Sbjct: 130 EIFSATTRFALACNNSTKIIEPIQSRCAILRYTRLPDEMLLRRLLTVCQEEKVGYKEEGL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMR ALNNLQ+T +GFG V+ E VFKVCD+PHP V+E+L C +G + +
Sbjct: 190 AALIFTAEGDMRNALNNLQATASGFGFVSDENVFKVCDQPHPAVVREILNQCAKGELDGA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K L+K GY+ DIIG IFRV K L + E LKL I+ IG H+ I++GV++LLQ+
Sbjct: 250 EKQAVELWKSGYSSLDIIGTIFRVCKALPMEDEKLKLEFIKLIGATHMCIADGVSTLLQI 309
Query: 300 SGLLARLC 307
GL+ARLC
Sbjct: 310 HGLVARLC 317
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/309 (62%), Positives = 244/309 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN D V RL+V + GN+PN+I+SGPPG GKTT+IL LA +LGPS+
Sbjct: 21 VEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGPSY 80
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRG+D VRNKIKMFAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 81 REGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTM 140
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 141 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAAEKVPYVPEGL 200
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK M+ N ++G ++
Sbjct: 201 EAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKSMVKNVLDGKFDEA 260
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FRV K D+ E LKL +++E G H+RI +GV S LQLS
Sbjct: 261 CSGLKQLYDLGYSPTDIITTLFRVIKNYDMAEFLKLELLKETGFAHMRICDGVGSFLQLS 320
Query: 301 GLLARLCIV 309
GLLA+ +V
Sbjct: 321 GLLAKFALV 329
>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 354
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPIFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+++ EGV +LLQL
Sbjct: 276 LDTLRELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGFTHMKVLEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + K+
Sbjct: 336 SGCVARLCKINMDPKR 351
>gi|367024189|ref|XP_003661379.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
gi|347008647|gb|AEO56134.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/316 (62%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 35 VEKYRPVFLDDIVGNTETVERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGDAY 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI+ VR +IK FAQ+KVTLP GRHKIVILDEADSMT GAQQALRRTM
Sbjct: 95 KEAVLELNASDERGIEVVRQRIKGFAQKKVTLPQGRHKIVILDEADSMTSGAQQALRRTM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ++ ++++I E E + +++DGL
Sbjct: 155 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYSDDGL 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VFTA+GDMRQA+NNLQSTH GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 215 AALVFTAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNIDSA 274
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 275 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 334
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 335 SGCVARLCKLNMDPKK 350
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/308 (62%), Positives = 247/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ D+VGN DT+ERLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 25 VEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLGDAY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPP RHKIVILDEADSMT GAQQALRRTM
Sbjct: 85 KEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPARHKIVILDEADSMTPGAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRF LACN S KIIEPIQSRCA+LRY KL D ++L +++EICE E + + +DGL
Sbjct: 145 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVEYNDDGL 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT +GDMRQA+NNLQSTH+GFG V+ E VFKVCD+PHP+ V+ ++ C++G++ +
Sbjct: 205 TALIFTCEGDMRQAINNLQSTHSGFGFVSGENVFKVCDQPHPVIVQSIIRACLKGDIDGA 264
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L++ GY+ DI+ +FRV KT D +PE KL I+EIG H+RI EGV +++QL
Sbjct: 265 MGKLNELWEQGYSAVDIVVTVFRVVKTFDELPEYTKLEYIKEIGFTHMRILEGVGTIIQL 324
Query: 300 SGLLARLC 307
GL+ARLC
Sbjct: 325 GGLVARLC 332
>gi|396478172|ref|XP_003840471.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
gi|312217043|emb|CBX96992.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
Length = 350
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/308 (62%), Positives = 249/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 32 VEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDAY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGR K+VILDEADSMT GAQQALRRTM
Sbjct: 92 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ +V++ICE E++ +++DG+
Sbjct: 152 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRVMQICEAEDVQYSDDGI 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V + VF+V D PHP+ V+ M+ +C E + D+
Sbjct: 212 AALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQAMIKSCHEQRIDDA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+D + E KL I+EIG H+RI EGV +LLQL
Sbjct: 272 LTALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILEGVQTLLQL 331
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 332 SGCIARLC 339
>gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 361
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/316 (60%), Positives = 251/316 (79%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 40 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 100 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 159
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E++ +++DGL
Sbjct: 160 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLMQIIEAESVQYSDDGL 219
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VFK+ D PHP+ V+ ML C EGN+ +
Sbjct: 220 AALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKIVDSPHPVKVQAMLKACYEGNVNSA 279
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H+++ EGV +LLQL
Sbjct: 280 LDILRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKVLEGVQTLLQL 339
Query: 300 SGLLARLCIVGSKNKK 315
SG + RLC + K+
Sbjct: 340 SGCVVRLCKINMDPKR 355
>gi|296192223|ref|XP_002743971.1| PREDICTED: replication factor C subunit 2 isoform 2 [Callithrix
jacchus]
Length = 318
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/307 (65%), Positives = 237/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASND SMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASND----------------------------------SMTDGAQQALRRTM 122
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + HT+DGL
Sbjct: 123 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMSVIEKERVPHTDDGL 182
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 183 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 242
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 243 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 302
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 303 GLLARLC 309
>gi|169776925|ref|XP_001822928.1| replication factor C subunit 4 [Aspergillus oryzae RIB40]
gi|83771665|dbj|BAE61795.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874280|gb|EIT83190.1| replication factor C, subunit RFC2 [Aspergillus oryzae 3.042]
Length = 352
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEPIQSRCA+LRY +LTD Q++ ++ ++C+ E + HT DG+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQVVKRLKQVCDAEKVEHTEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 271 LETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCIAKLCKINMK 343
>gi|425773728|gb|EKV12062.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum PHI26]
gi|425782289|gb|EKV20208.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum Pd1]
Length = 352
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/313 (61%), Positives = 251/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 31 VEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTAGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++ICE EN+ H+ DG+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLMQICEAENVEHSEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDVA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 271 LEGLNELWTLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCKINMK 343
>gi|346974683|gb|EGY18135.1| replication factor C subunit 4 [Verticillium dahliae VdLs.17]
Length = 361
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/316 (60%), Positives = 251/316 (79%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 40 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 100 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 159
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E++ +++DGL
Sbjct: 160 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLMQIIEAESVQYSDDGL 219
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VFK+ D PHP+ V+ ML C EGN+ +
Sbjct: 220 AALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKIVDSPHPVKVQAMLKACYEGNVNSA 279
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H+++ EGV +LLQL
Sbjct: 280 LDILRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKVLEGVQTLLQL 339
Query: 300 SGLLARLCIVGSKNKK 315
SG + RLC + K+
Sbjct: 340 SGCVVRLCKINMDPKR 355
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/307 (62%), Positives = 248/307 (80%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN DTV+RLKV + GNVP+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 29 VEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGEAY 88
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 89 KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 148
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY+KL DA++L ++ EIC+ E+I H ++GL
Sbjct: 149 EIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDMESIKHNDEGL 208
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQST +GFG V + VFK+CD+PHP+ +++M+ +C G + ++
Sbjct: 209 AALIFTAEGDMRQAINNLQSTWSGFGFVNQDNVFKICDQPHPIVIRQMIKDCQHGKIDEA 268
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ GY+ DI+ +FRV K + ++PE LKL I+EIG H+R+ EGV +L+QL
Sbjct: 269 LARVNALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMRVLEGVGTLVQL 328
Query: 300 SGLLARL 306
++ARL
Sbjct: 329 GAMIARL 335
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/309 (63%), Positives = 244/309 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DIVGNEDTV RL+V + GN+PN+I+SGPPG GKTT++L LA LLG ++
Sbjct: 15 VEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGANY 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNAS+DRGID VRNKIKMFAQ+KVTLP G HKIVILDEADSMT GAQQALRRTM
Sbjct: 75 REAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEADSMTTGAQQALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E E + +GL
Sbjct: 135 EIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPFVPEGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T++GF V E VFKVCD+PHPL VK M+ N +EG D+
Sbjct: 195 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 254
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S LQL
Sbjct: 255 CYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLC 314
Query: 301 GLLARLCIV 309
GLLA+L +V
Sbjct: 315 GLLAKLAVV 323
>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
Length = 326
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/314 (60%), Positives = 248/314 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ +D+VGN+D + RL+V + GN+PN+I SGPPG+GKTT I+ +A +LG
Sbjct: 12 VEKYRPQKLADVVGNQDAIGRLQVIARDGNMPNLIFSGPPGIGKTTCIMAMAHEMLGALA 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+K+TLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 72 KEAVLELNASDDRGIDVVRNKIKMFAQKKLTLPRGRHKVVILDEADSMTSGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS++TRF LACN S +IIEPIQSRCA++R+ +L++ +L++++++ E + + +GL
Sbjct: 132 EIYSSSTRFGLACNLSSQIIEPIQSRCAIVRFTRLSEQDILARLLKVAAAEKVPYVPEGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTA GDMRQALNNLQ+T++GF V E VFKVCD+PHPL V M+ N + G + ++
Sbjct: 192 EAVVFTADGDMRQALNNLQATYSGFQFVNRENVFKVCDQPHPLLVSTMIQNTLAGKIDEA 251
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
Y + LY LGY+ DII +FRV K D+PE LKL I+E+G H+RI+EGV SLLQL+
Sbjct: 252 YLGMKQLYDLGYSASDIITTLFRVVKNFDMPEFLKLEYIKEVGFAHMRIAEGVGSLLQLT 311
Query: 301 GLLARLCIVGSKNK 314
GLLA+LC++ K K
Sbjct: 312 GLLAKLCLLREKAK 325
>gi|340904964|gb|EGS17332.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 803
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/308 (62%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 482 VEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGDAY 541
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VR +IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 542 KEAVLELNASDERGIDVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 601
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY+KLTDAQ++ ++++I E E + +++DGL
Sbjct: 602 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDAQIVKRLMQIIEAEKVEYSDDGL 661
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VFTA+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ M+ C EG + +
Sbjct: 662 AALVFTAEGDMRQAINNLQSTVAGFGFVSGDNVFKVVDSPHPIKVQAMIKACYEGKIDQA 721
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 722 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 781
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 782 SGCVARLC 789
>gi|389751171|gb|EIM92244.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 343
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/308 (62%), Positives = 249/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN DT++RLKV + GNVP++IISG PG+GKTT+I CLA LLG ++
Sbjct: 25 VEKYRPNILDDVVGNSDTIDRLKVIARDGNVPHLIISGMPGIGKTTSIHCLAHQLLGDAY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 85 KEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRF LACN S KIIEPIQSRCA+LRY KL DA++L +++EIC+ E + + +DGL
Sbjct: 145 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDAEILKRLLEICDIEKVEYNDDGL 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQST +GFG V+++ VFKVCD+PHP+ V+ ++ C++ N+ +
Sbjct: 205 TALIFTSEGDMRQAINNLQSTWSGFGFVSSDNVFKVCDQPHPIIVQTIIRACMKSNVDLA 264
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ GY+ DII IFRV KT D +PE KL I+EIG H+RI EGV +L+QL
Sbjct: 265 MEKLSELWGQGYSAVDIIVTIFRVVKTFDELPEYTKLEYIKEIGFTHMRILEGVGTLIQL 324
Query: 300 SGLLARLC 307
+GL+ARLC
Sbjct: 325 AGLIARLC 332
>gi|322703485|gb|EFY95093.1| putative replication factor C [Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KL+DAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLMQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDTLRELWNLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARL + KK
Sbjct: 336 SGCVARLSKINMDPKK 351
>gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143]
gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88]
Length = 354
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 247/313 (78%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + +GN+P++IISG PG+GKTT+ILCLAR +LG S+
Sbjct: 31 VEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTSILCLARQMLGDSY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTD Q+L ++ +ICE E + ++ DGL
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKRLTQICEAEKVKYSEDGL 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++F+A+GDMRQA+NNLQST GFG V+ E VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 EALIFSAEGDMRQAINNLQSTWAGFGFVSGENVFRVVDSPHPVKVQAMIKACWEGKIDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ + E +L I+EIG H+RI EGV +L+QL
Sbjct: 271 LDSLNELWDLGYSSHDIISTMFRVTKTMPTLSEHTRLEFIKEIGFTHMRILEGVQTLVQL 330
Query: 300 SGLLARLCIVGSK 312
SG LA+LC + K
Sbjct: 331 SGCLAKLCRINMK 343
>gi|336472626|gb|EGO60786.1| hypothetical protein NEUTE1DRAFT_144139 [Neurospora tetrasperma
FGSC 2508]
gi|350294141|gb|EGZ75226.1| putative replication factor C [Neurospora tetrasperma FGSC 2509]
Length = 357
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P+ IISG PG+GKTT++LCLAR LLG ++
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGDAY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI+ VR +IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LR+ KLTDAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDAA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 336 SGCVARLCKLNMDPKK 351
>gi|28950096|emb|CAD70859.1| probable REPLICATION FACTOR C (40 KDA SUBUNIT) [Neurospora crassa]
Length = 357
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P+ IISG PG+GKTT++LCLAR LLG ++
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGDAY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI+ VR +IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LR+ KLTDAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDAA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 336 SGCVARLCKLNMDPKK 351
>gi|115398522|ref|XP_001214850.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
gi|114191733|gb|EAU33433.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/313 (61%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 91 KDAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIIILDEADSMTPGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTD Q++ ++ ++C+ E + HT DGL
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLKQVCDAEKVEHTEDGL 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 271 LETLNELWTLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +++LC + K
Sbjct: 331 SGCVSKLCKINMK 343
>gi|261187582|ref|XP_002620210.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239594101|gb|EEQ76682.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239608919|gb|EEQ85906.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis ER-3]
gi|327354067|gb|EGE82924.1| replication factor C subunit 4 [Ajellomyces dermatitidis ATCC
18188]
Length = 354
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/313 (61%), Positives = 247/313 (78%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG ++
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ+L ++ +ICE EN+ H+ DGL
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVLKRLTQICEAENVKHSEDGL 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++F+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGRIDVA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI EGV +L+QL
Sbjct: 271 LDTLNELWDLGYSSHDIISTMFRVTKTIPTLSEHAKLEFIKEIGFTHMRILEGVQTLVQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCRINMK 343
>gi|145250105|ref|XP_001396566.1| replication factor C subunit 4 [Aspergillus niger CBS 513.88]
gi|134082079|emb|CAK42196.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 250/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEPIQSRCA+LRY +LTDAQ++ ++ ++C+ E + H +G+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQVCDAEKVEHNEEGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L++LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 271 LETLNELWELGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCRINMK 343
>gi|367037019|ref|XP_003648890.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
gi|346996151|gb|AEO62554.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
Length = 358
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 37 VEKYRPVFLDDVVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGDSY 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI+ VR +IK FAQ+KVTLP GRHKIVILDEADSMT GAQQALRRTM
Sbjct: 97 KEAVLELNASDERGIEVVRQRIKGFAQKKVTLPAGRHKIVILDEADSMTSGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LR+ KLTDAQ++ ++++I E E + +++DGL
Sbjct: 157 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEYSDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 217 AALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNIDAA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 277 LDSLRELWNLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 336
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 337 SGCVARLCKLNMDPKK 352
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/308 (62%), Positives = 245/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTD Q++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDTLRELWDLGYSSHDIISTMFKVTKTMPTLSEHSKLEFIREIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 336 SGCVARLC 343
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/309 (63%), Positives = 249/309 (80%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ SDIVGN+DTV+RL+V + GN+P++I+SG PG+GKTT +L LA LLGP
Sbjct: 12 VEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLALAHTLLGPDV 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK+AVLELNAS++RGID VRN+IK FAQ+K+ LPPGRHKIVILDEADSMT GAQQALRRT
Sbjct: 72 FKEAVLELNASDERGIDVVRNRIKSFAQKKIALPPGRHKIVILDEADSMTSGAQQALRRT 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEPIQSRCA+LR++KL D +LL ++ +I EKEN T++G
Sbjct: 132 MEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQRLRQIAEKENADVTDEG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
EA++FT++GDMRQA+NNLQSTH G G VT + VFKVCD+PHPL V+ +L +C + +++D
Sbjct: 192 YEALIFTSEGDMRQAVNNLQSTHTGLGLVTPDAVFKVCDQPHPLLVQNLLESCHKADIED 251
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAK-TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L+ GYA DII +FRVA+ T + E LKL I+EIG H+RI EGV +++Q
Sbjct: 252 ALSKLDELWTHGYAAIDIIQTLFRVARNTQSLEESLKLEYIKEIGWTHMRILEGVATIVQ 311
Query: 299 LSGLLARLC 307
LSGL+ARLC
Sbjct: 312 LSGLVARLC 320
>gi|402863245|ref|XP_003895941.1| PREDICTED: replication factor C subunit 2 isoform 2 [Papio anubis]
gi|384948614|gb|AFI37912.1| replication factor C subunit 2 isoform 2 [Macaca mulatta]
gi|387542034|gb|AFJ71644.1| replication factor C subunit 2 isoform 2 [Macaca mulatta]
Length = 318
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/307 (64%), Positives = 237/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASND SMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASND----------------------------------SMTDGAQQALRRTM 122
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 123 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMNVIEKERVPYTDDGL 182
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 183 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 242
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 243 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 302
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 303 GLLARLC 309
>gi|356563210|ref|XP_003549857.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 332
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/310 (63%), Positives = 245/310 (79%), Gaps = 1/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG-PS 59
+EKYRP +DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLG P+
Sbjct: 16 VEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPN 75
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRT
Sbjct: 76 CKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + + E + + +G
Sbjct: 136 MEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI+FTA GDMRQALNNLQ+T++GF V VFKVCD+PHPL VK M+ N +EGN +
Sbjct: 196 LEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVCNVIEGNFDE 255
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S LQL
Sbjct: 256 ACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQL 315
Query: 300 SGLLARLCIV 309
GLLA+L +V
Sbjct: 316 CGLLAKLSLV 325
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/313 (61%), Positives = 251/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN DT+ERLKV + GN P++IISG PG+GKTT+I CLA LLG ++
Sbjct: 23 VEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLGDAY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGI+ VR KIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 83 KEGVLELNASDERGIEVVRTKIKQFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRF LACN S KIIEPIQSRCA+LRY KL D ++L +++EICE+E++ + +DGL
Sbjct: 143 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEEEDVKYNDDGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQST +GFG V+ + VFK+CD+PHP+ V+ + +C++G++ ++
Sbjct: 203 TALIFTSEGDMRQAINNLQSTFSGFGFVSGDNVFKICDQPHPIVVQAAIRSCLKGDVDEA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I L+ GY+ DI+ +FRV KT D +PE KL I+EIG H+RI EGV +L+QL
Sbjct: 263 LGKIKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFTHMRILEGVGTLVQL 322
Query: 300 SGLLARLCIVGSK 312
+GL+ARLC + K
Sbjct: 323 AGLVARLCKMNHK 335
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/307 (62%), Positives = 249/307 (81%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN DTVERLKV + GN+P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 29 VEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLGEAY 88
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 89 KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 148
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY+KL DA++L ++ EIC+ E++ + ++GL
Sbjct: 149 EIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDMESVKYNDEGL 208
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQST +GFG V+ + VFK+CD+PHP+ +++M+ +C G + ++
Sbjct: 209 AALIFTAEGDMRQAINNLQSTWSGFGFVSQDNVFKICDQPHPIVIRQMIKDCQYGKIDEA 268
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ GY+ DI+ +FRV K + ++PE LKL I+EIG H+RI EGV +L+QL
Sbjct: 269 LARVNALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMRILEGVGTLVQL 328
Query: 300 SGLLARL 306
++ARL
Sbjct: 329 GAMIARL 335
>gi|356514052|ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 331
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/310 (63%), Positives = 245/310 (79%), Gaps = 1/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG-PS 59
+EKYRP +DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLG P+
Sbjct: 15 VEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPN 74
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRT
Sbjct: 75 CKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQALRRT 134
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + + E + + +G
Sbjct: 135 MEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEG 194
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI+FTA GDMRQALNNLQ+T++GF V VFKVCD+PHPL VK M+ N +EGN +
Sbjct: 195 LEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDE 254
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S LQL
Sbjct: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQL 314
Query: 300 SGLLARLCIV 309
GLLA+L +V
Sbjct: 315 CGLLAKLSLV 324
>gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 354
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 247/313 (78%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + +GN+P++IISG PG+GKTT+ILCLAR +LG S+
Sbjct: 31 VEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTSILCLARQMLGNSY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTD Q+L ++ +ICE E + ++ DGL
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKRLTQICEAEKVKYSEDGL 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++F+A+GDMRQA+NNLQST GFG V+ E VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 EALIFSAEGDMRQAINNLQSTWAGFGFVSGENVFRVVDSPHPVKVQAMIKACWEGKIDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ + E +L I+EIG H+RI EGV +L+QL
Sbjct: 271 LDSLNELWDLGYSSHDIISTMFRVTKTMPTLSEHTRLEFIKEIGFTHMRILEGVQTLVQL 330
Query: 300 SGLLARLCIVGSK 312
SG LA+LC + K
Sbjct: 331 SGCLAKLCRINMK 343
>gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 250/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTAGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++ICE E + H+ DG+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLMQICEAEKVQHSEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDVA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 271 LEGLNELWTLGYSAHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCKINMK 343
>gi|322701219|gb|EFY92969.1| putative replication factor C [Metarhizium acridum CQMa 102]
Length = 357
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/316 (61%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 REAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KL+DAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLLQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARL + KK
Sbjct: 336 SGCVARLSKINMDPKK 351
>gi|358375659|dbj|GAA92238.1| activator 1 37 kDa subunit [Aspergillus kawachii IFO 4308]
Length = 352
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPVFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEPIQSRCA+LRY +LTDAQ++ ++ ++C+ E + H +G+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQVCDAEKVEHNEEGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKIDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 271 LETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCKINMK 343
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/307 (62%), Positives = 248/307 (80%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN DT++RLKV + GNVP+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 29 VEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGEAY 88
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 89 KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 148
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY+KL DA++L ++ EIC+ E+I + ++GL
Sbjct: 149 EIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDMESIKYNDEGL 208
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQST +GFG V + VFK+CD+PHP+ +++M+ +C G + ++
Sbjct: 209 AALIFTAEGDMRQAINNLQSTWSGFGFVNQDNVFKICDQPHPIVIRQMIKDCQHGKIDEA 268
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I+ L+ GY+ DI+ +FRV K + ++PE LKL I+EIG H+R+ EGV +L+QL
Sbjct: 269 LARINALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMRVLEGVGTLVQL 328
Query: 300 SGLLARL 306
++ARL
Sbjct: 329 GAMIARL 335
>gi|402074193|gb|EJT69722.1| replication factor C subunit 4 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 360
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 248/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 37 VEKYRPIFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 97 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E + H+ DGL
Sbjct: 157 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRLLQIIEAEGVRHSEDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V+ + VF+V D PHP+ V+ ML C EGN+ +
Sbjct: 217 AALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFRVVDSPHPIKVQAMLKACHEGNVGSA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 277 LDGLRELWDLGYSSHDIISTMFKVIKTIPTLSEHAKLEFIKEIGFAHMKILEGVQTLLQL 336
Query: 300 SGLLARLCIVGSKNKK 315
SG + RLC + KK
Sbjct: 337 SGCVVRLCKLNMDPKK 352
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 184/300 (61%), Positives = 246/300 (82%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT ++VGNED V RL+ + GN+P+++++G PG+GKTT +L LAR LLG SF
Sbjct: 15 VEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALARELLGDSF 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIKMFAQQKVTLPPGRHKI+ILDEADSMT +QQA+RRTM
Sbjct: 75 KEGVLELNASDERGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTSASQQAMRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFALACNNS +IIEPIQSRCA+LR+ KL+D +LLS++ +ICEKE + + DGL
Sbjct: 135 ELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDICEKEEVLASTDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA GDMRQA+N+LQST NGFG V E VFKVCD+PHP +++ +C+ G++K++
Sbjct: 195 EALIFTADGDMRQAVNSLQSTANGFGIVNQESVFKVCDQPHPKTAIQIVKSCLTGDIKNA 254
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ + L++ GY+ +DI+ IF+V + +D+PE KL ++EIG H+R+ EGV+SL+Q+S
Sbjct: 255 HSKLEDLWQRGYSAQDIVQTIFKVTRNMDMPEKSKLDFLKEIGIYHMRVLEGVDSLVQVS 314
>gi|320040647|gb|EFW22580.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 352
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/313 (60%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG +
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDVY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPG+HK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E++ H++DG+
Sbjct: 151 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQIVKRLMQICEAEDVKHSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACYEGKVDSA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +FRV KT+ +PE KL I+EIG H+RI EG+ + +QL
Sbjct: 271 LDTLTELWDLGYSSHDIISTMFRVTKTIPSLPEHSKLEFIKEIGFTHMRILEGLQTFVQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCKINMK 343
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/313 (61%), Positives = 251/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN DT+ERLKV + GN P++IISG PG+GKTT+I CLA LLG ++
Sbjct: 23 VEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLGDAY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGI+ VR KIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 83 KEGVLELNASDERGIEVVRTKIKQFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SNTTRF LACN S KIIEPIQSRCA+LRY KL D ++L +++EICE+E++ + +DGL
Sbjct: 143 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEEEDVKYNDDGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQST +GFG V+ + VFK+CD+PHP+ V+ + +C++G++ ++
Sbjct: 203 TALIFTSEGDMRQAINNLQSTFSGFGFVSGDNVFKICDQPHPIVVQAAIRSCLKGDVDEA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I L+ GY+ DI+ +FRV KT D +PE KL I+EIG H+RI EGV +L+QL
Sbjct: 263 LGKIKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFTHMRILEGVGTLVQL 322
Query: 300 SGLLARLCIVGSK 312
+GL+ARLC + K
Sbjct: 323 AGLVARLCKMNHK 335
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DI GN +T+ERLKV + GN P+IIISG PG+GKTT+ILCLA LLG S+
Sbjct: 30 VEKYRPIILDDITGNVETIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLGDSY 89
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FA KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 90 KEGVLELNASDERGIDVVRNKIKTFANTKVTLPPGRHKIIILDEADSMTSGAQQALRRTM 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+N+TRFALACN S KIIEPIQSRCA+LRY KL+D ++L +++EIC+ EN+ + N+GL
Sbjct: 150 EIYANSTRFALACNFSSKIIEPIQSRCAILRYGKLSDQEILKRLVEICDAENVKYANEGL 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FTA+GDMRQA+NNLQST +GF V++E VFKVCD+PHP+ +K++L C +G ++ +
Sbjct: 210 AAIIFTAEGDMRQAINNLQSTVSGFEFVSSEAVFKVCDQPHPIVIKQLLAACEKGEVQTA 269
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ GY+ DI+ + +V K++D + E +KL I+EIG H+RI EGV++++QL
Sbjct: 270 LESLDELWTQGYSAIDIVTTLSKVVKSMDKMAEYIKLEFIKEIGYTHMRILEGVSTIVQL 329
Query: 300 SGLLARLC 307
GL++RLC
Sbjct: 330 GGLISRLC 337
>gi|451846118|gb|EMD59429.1| hypothetical protein COCSADRAFT_41279 [Cochliobolus sativus ND90Pr]
Length = 353
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 32 VEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDAY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGR K+VILDEADSMT GAQQALRRTM
Sbjct: 92 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++ICE E++ +++DG+
Sbjct: 152 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQICEAEDVKYSDDGI 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V + VFKV D PHP+ V+ M+ C E + D+
Sbjct: 212 AALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQSMIKACHEQRVDDA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+D + E KL I+EIG H+RI EGV +LLQL
Sbjct: 272 LAALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILEGVQTLLQL 331
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 332 SGCVARLC 339
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T++RLKV + GN+P+++ISG PG+GKTT+ILCLA LLGP++
Sbjct: 24 VEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRN+IK FAQ+KV LPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 84 KEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY++LTD Q+L +++ IC+ E +++T+DGL
Sbjct: 144 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ TA+GDMRQA+NNLQST GFG V E VF+V D+P P+A+ ML C GN+ +
Sbjct: 204 AALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDVA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + ++ LG++ DI+ N+FRV KT+D IPE +L +++EIG H+ I EGV +LLQL
Sbjct: 264 LEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQL 323
Query: 300 SGLLARLC 307
SGL+ RL
Sbjct: 324 SGLVCRLA 331
>gi|30584413|gb|AAP36459.1| Homo sapiens replication factor C (activator 1) 2, 40kDa [synthetic
construct]
gi|60652727|gb|AAX29058.1| replication factor C 2 [synthetic construct]
Length = 321
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 237/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASND SMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASND----------------------------------SMTDGAQQALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 125 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 185 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 244
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 245 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 304
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 305 GLLARLC 311
>gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/313 (61%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++ +IC+ E + HT DG+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVQRLKQICDAEKVEHTEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGLVNGDNVFRVVDSPHPIKVQAMIKACWEGKIDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 271 LETLNELWNLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +++LC + K
Sbjct: 331 SGCVSKLCKINMK 343
>gi|28882049|ref|NP_002905.2| replication factor C subunit 2 isoform 2 [Homo sapiens]
gi|18921085|gb|AAL82503.1|AF483622_1 replication factor C (activator 1) 2 (40kD) [Homo sapiens]
gi|12803933|gb|AAH02813.1| Replication factor C (activator 1) 2, 40kDa [Homo sapiens]
gi|30172693|gb|AAP22335.1| unknown [Homo sapiens]
gi|30582955|gb|AAP35707.1| replication factor C (activator 1) 2, 40kDa [Homo sapiens]
gi|60655817|gb|AAX32472.1| replication factor C 2 [synthetic construct]
gi|60655819|gb|AAX32473.1| replication factor C 2 [synthetic construct]
gi|119590011|gb|EAW69605.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_a [Homo
sapiens]
gi|119590012|gb|EAW69606.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_a [Homo
sapiens]
Length = 320
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 237/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASND SMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASND----------------------------------SMTDGAQQALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 125 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 185 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 244
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 245 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 304
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 305 GLLARLC 311
>gi|301094042|ref|XP_002997865.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
gi|262109788|gb|EEY67840.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
Length = 327
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/315 (61%), Positives = 247/315 (78%), Gaps = 1/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +D+VGN DT+ L+ + +GN+ N+I+SGPPG GKTT+ILCLAR LLG S
Sbjct: 10 VEKYRPRVLADVVGNRDTIASLQAMAKAGNMTNLILSGPPGTGKTTSILCLARELLGTSL 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+TVR+KIKMFAQQKVTLPPGRHKIVILDEADSMT AQQALRRTM
Sbjct: 70 KQAVLELNASDDRGINTVRSKIKMFAQQKVTLPPGRHKIVILDEADSMTAAAQQALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRFALACNNS KIIEPIQSRCA+LR+ +L D LL +++ +C++EN+ + +GL
Sbjct: 130 EIFSATTRFALACNNSTKIIEPIQSRCAILRFTRLPDEMLLRRLLTVCQEENVGYKEEGL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMR ALNNLQ+T +GF V+ E VFKVCD+PHP V+E+L +C +G + +
Sbjct: 190 AALIFTAEGDMRNALNNLQATASGFSFVSDENVFKVCDQPHPAVVREILNHCAKGELDGA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K L+K GY+ DIIG IFRV K L + E LKL I+ IG H+ I++GV++LLQ+
Sbjct: 250 EKQAVDLWKSGYSSLDIIGTIFRVCKALPMDDEKLKLEFIKLIGATHMCIADGVSTLLQI 309
Query: 300 SGLLARLCIVGSKNK 314
GL+ARLC V K
Sbjct: 310 HGLVARLCSVALAAK 324
>gi|327297458|ref|XP_003233423.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326464729|gb|EGD90182.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/313 (60%), Positives = 252/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDTY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E + +++DG+
Sbjct: 151 EIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEAEKVKYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDIA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L++LGY+ DII +FRV KT+ ++ E KL I+EIG H+RI EG+ +L+QL
Sbjct: 271 LDTLNELWELGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMRILEGLQTLVQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCIAKLCKINMK 343
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 244/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN+DT++RLKV GN P+++ISG PG+GKTT++LCLAR LLG ++
Sbjct: 25 VEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCLARALLGEAY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RG+D VRNKIK FAQ+KV+LPPGRHKI+ILDEADSMT AQQALRRTM
Sbjct: 85 KEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRHKIIILDEADSMTPAAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRF ACN S KIIEPIQSRCA+LRY K+ D +L +++EICE EN+ ++++GL
Sbjct: 145 EIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKVRDEHILKRLLEICEMENVEYSDEGL 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FT +GDMRQA+NNLQST G G V+ + VFKVCD+PHP ++ +LL C +G++ ++
Sbjct: 205 AAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPFLIRSILLACKDGHVDEA 264
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + + GYA DI+ +FRV KTLD IPE KL I+EIG H++I EGV +L+QL
Sbjct: 265 LEKLDEISSKGYAAVDIVTTLFRVVKTLDAIPEATKLDFIKEIGWTHIKILEGVATLVQL 324
Query: 300 SGLLARLC 307
GLLARLC
Sbjct: 325 GGLLARLC 332
>gi|299471716|emb|CBN76937.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 332
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/317 (59%), Positives = 249/317 (78%), Gaps = 1/317 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGNE T++RLKV + GN+PN+II GPPG GKTT++ LA +LG ++
Sbjct: 13 VEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+AVLELNAS+ RGI+ VRN IKMF Q+KVTLPPG+HK++ILDEADSMT AQQALRRTM
Sbjct: 73 ANAVLELNASDSRGIEVVRNTIKMFTQKKVTLPPGQHKVIILDEADSMTASAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN S KIIEPIQSRCA+LR+++L++ ++L ++ ++CE E +S++ DGL
Sbjct: 133 EIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLRLQQVCEAEQVSYSPDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMR ALNNLQ+TH+GFGHV VFKVCD+PHP V E+L +CVEG+ +
Sbjct: 193 EAIIFTAEGDMRNALNNLQATHSGFGHVDQANVFKVCDQPHPGVVLEILKSCVEGDCAKA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKT-LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + LY GY+ DIIG +FRV K L++ E KL +I+E+G H+R+++GVNSLLQL
Sbjct: 253 SRRMKALYDTGYSSNDIIGTVFRVCKNQLEVNEGAKLEMIKEVGFTHVRVADGVNSLLQL 312
Query: 300 SGLLARLCIVGSKNKKT 316
G+ ARLC V + T
Sbjct: 313 MGMCARLCRVAQQQSTT 329
>gi|114613997|ref|XP_001149670.1| PREDICTED: replication factor C subunit 2 isoform 1 [Pan
troglodytes]
gi|397489163|ref|XP_003815602.1| PREDICTED: replication factor C subunit 2 [Pan paniscus]
gi|410250174|gb|JAA13054.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
Length = 320
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 237/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASND SMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASND----------------------------------SMTDGAQQALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 125 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 185 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 244
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 245 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 304
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 305 GLLARLC 311
>gi|426356547|ref|XP_004045626.1| PREDICTED: replication factor C subunit 2 [Gorilla gorilla gorilla]
Length = 320
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 237/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASND SMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASND----------------------------------SMTDGAQQALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 125 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 185 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 244
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 245 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 304
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 305 GLLARLC 311
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 244/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTD Q++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LDTLRELWDKGYSSHDIISTMFKVTKTMPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 336 SGCVARLC 343
>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
Length = 335
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/316 (61%), Positives = 244/316 (77%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+ GN D V RL+ + GN+PN+I+SGPPG GKTT+IL LA LLGPS+
Sbjct: 20 VEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKTTSILSLAHELLGPSY 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++AVLELNAS+DRG+D VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 80 REAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTM 139
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E + + +GL
Sbjct: 140 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYVPEGL 199
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK M+ N ++G ++
Sbjct: 200 EAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDGKFDEA 259
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FRV K D+ E LKL +++E G H+RI +GV S LQLS
Sbjct: 260 CSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFAHMRICDGVGSFLQLS 319
Query: 301 GLLARLCIVGSKNKKT 316
GLLA+ +V K +
Sbjct: 320 GLLAKFALVRETAKAS 335
>gi|301769427|ref|XP_002920131.1| PREDICTED: replication factor C subunit 2-like isoform 2
[Ailuropoda melanoleuca]
Length = 318
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/307 (63%), Positives = 238/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+F
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAF 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASND SMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASND----------------------------------SMTDGAQQALRRTM 122
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 123 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGL 182
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNN+QST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 183 EAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMVQHCVNANVDEA 242
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 243 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 302
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 303 GLLARLC 309
>gi|380470252|emb|CCF47823.1| replication factor C subunit 4 [Colletotrichum higginsianum]
Length = 361
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/316 (60%), Positives = 248/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T++RLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 40 VEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 100 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 159
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTD Q++ ++++I E E + +++DGL
Sbjct: 160 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLMQIIEAEKVEYSDDGL 219
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 220 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 279
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 280 LDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 339
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 340 SGCVARLCKINMDPKK 355
>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
Length = 354
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/316 (61%), Positives = 246/316 (77%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +TVERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPVGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ+L ++++I E E + ++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLMQIIEAEKVEFSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EG + +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGKVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H+++ EGV +LLQL
Sbjct: 276 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKVLEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG + RLC + K+
Sbjct: 336 SGCVVRLCKINMDPKR 351
>gi|407926292|gb|EKG19259.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 352
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/313 (61%), Positives = 245/313 (78%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 30 VEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDAY 89
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGR KIVILDEADSMT GAQQALRRTM
Sbjct: 90 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKIVILDEADSMTSGAQQALRRTM 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQL+ ++++IC E + ++ DGL
Sbjct: 150 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQLVKRLMQICGAEQVEYSEDGL 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V + VFKV D PHP+ V+ M+ C E + +
Sbjct: 210 AALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFKVVDSPHPIKVQAMIQACHEQKVDAA 269
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H+RI EGV + LQL
Sbjct: 270 LDTLRELWDLGYSCHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMRILEGVQTFLQL 329
Query: 300 SGLLARLCIVGSK 312
SG +ARLC + K
Sbjct: 330 SGCVARLCKINMK 342
>gi|429859273|gb|ELA34061.1| activator 1 37 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 361
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/316 (60%), Positives = 248/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T++RLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 40 VEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 100 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 159
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTD Q++ ++++I E E + +++DGL
Sbjct: 160 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLLQIIEAEKVEYSDDGL 219
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 220 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 279
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 280 LDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 339
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 340 SGCVARLCKINMDPKK 355
>gi|326481689|gb|EGE05699.1| replication factor C subunit 4 [Trichophyton equinum CBS 127.97]
Length = 352
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/308 (60%), Positives = 249/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDTY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E + +++DG+
Sbjct: 151 EIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEAEKVKYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDIA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ ++ E KL I+EIG H+RI EG+ +L+QL
Sbjct: 271 LDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMRILEGLQTLVQL 330
Query: 300 SGLLARLC 307
SG +A+LC
Sbjct: 331 SGCIAKLC 338
>gi|326472467|gb|EGD96476.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/308 (60%), Positives = 249/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDTY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E + +++DG+
Sbjct: 151 EIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEAEKVKYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDIA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ ++ E KL I+EIG H+RI EG+ +L+QL
Sbjct: 271 LDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMRILEGLQTLVQL 330
Query: 300 SGLLARLC 307
SG +A+LC
Sbjct: 331 SGCIAKLC 338
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 247/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN DT++RLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 25 VEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHALLGDAY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 85 KEGVLELNASDERGIDVVRNKIKTFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY+KL D ++L +++EICE E + + ++GL
Sbjct: 145 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEAEKVKYNDEGL 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NN+QST +GFG V + VFKVCD+PHP+ ++ ML +C +G+++ +
Sbjct: 205 TALIFTAEGDMRQAINNIQSTWSGFGFVNGDNVFKVCDQPHPVLIQAMLRSCHKGDVQGT 264
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DI+ +FRV KT ++ E KL I+EIG H+R+ EGV + +QL
Sbjct: 265 MDKLDELWGQGYSAVDIVVTLFRVTKTFNELQEYSKLEYIREIGWTHMRVLEGVGTKMQL 324
Query: 300 SGLLARLC 307
+GL+ARLC
Sbjct: 325 AGLVARLC 332
>gi|408397489|gb|EKJ76631.1| hypothetical protein FPSE_03181 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/316 (61%), Positives = 246/316 (77%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +TVERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPVGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ+L ++++I E E + ++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLMQIIEAEKVEFSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EG + +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGKVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H+++ EGV +LLQL
Sbjct: 276 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKVLEGVQTLLQL 335
Query: 300 SGLLARLCIVGSKNKK 315
SG + RLC + K+
Sbjct: 336 SGCVVRLCKINMDPKR 351
>gi|310792410|gb|EFQ27937.1| replication factor C [Glomerella graminicola M1.001]
Length = 361
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/316 (60%), Positives = 248/316 (78%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T++RLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 40 VEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 100 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 159
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY +LTD Q++ ++++I E E + +++DGL
Sbjct: 160 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLLQIIEAEKVEYSDDGL 219
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 220 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNIDSA 279
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 280 LDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 339
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 340 SGCVARLCKINMDPKK 355
>gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 356
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/308 (62%), Positives = 245/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCL+R LLG S+
Sbjct: 35 VEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLSRQLLGDSY 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI+ VR +IK FAQ+KVTLP GRHKIVILDEADSMT GAQQALRRTM
Sbjct: 95 KEAVLELNASDERGIEVVRQRIKGFAQKKVTLPQGRHKIVILDEADSMTSGAQQALRRTM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ++ ++++I E E + + ++GL
Sbjct: 155 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYNDEGL 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+A+ VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 215 AALVFSAEGDMRQAINNLQSTFAGFGFVSADNVFKVVDSPHPIKVQAMLKACYEGNIDSA 274
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 275 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 334
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 335 SGCVARLC 342
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/308 (61%), Positives = 241/308 (78%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN+DT++RLKV + GN P+++ISG PG+GKTT++LCLAR LLG ++
Sbjct: 24 VEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGDAY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RG+D VRNKIK FAQ+KV+LP GRHKIVILDEADSMT AQQALRRTM
Sbjct: 84 KEGVLELNASDERGVDVVRNKIKTFAQKKVSLPAGRHKIVILDEADSMTPAAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRF ACN S KIIEPIQSRCA+LRY K+ D Q+L +++EICE E + +T++GL
Sbjct: 144 EIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVKDEQILKRLLEICEMEKVEYTDEGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FT +GDMRQA+NNLQST G G V E VFKVCD+PHP ++ +L C EG++ +
Sbjct: 204 AAIIFTTEGDMRQAINNLQSTWTGLGFVNPENVFKVCDQPHPFLIRALLTACQEGDVDLA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ GYA DI+ +FRV KT+D IPE KL I+EIG H++I EGV +++QL
Sbjct: 264 MDKLDEIWAKGYAAVDIVTTLFRVVKTMDRIPEATKLEFIKEIGWTHMKILEGVATVVQL 323
Query: 300 SGLLARLC 307
GL+ARLC
Sbjct: 324 GGLIARLC 331
>gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
Length = 350
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 247/313 (78%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG ++
Sbjct: 31 VEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQMLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTPGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTD Q++ ++ +ICE E + + DG+
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKRLSQICEAEKVDFSEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV +LLQL
Sbjct: 271 LDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHAKLEFIKEIGFTHMRILDGVGTLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCKINMK 343
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/308 (61%), Positives = 245/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLA LLG ++
Sbjct: 32 VEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLAHQLLGDAY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGR K+VILDEADSMT GAQQALRRTM
Sbjct: 92 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++ICE E++ +++DG+
Sbjct: 152 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQICEAEDVKYSDDGI 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V + VFKV D PHP+ V+ M+ C E + D+
Sbjct: 212 AALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQSMIKACHEQRIDDA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+D + E KL I+EIG H+RI EGV +LLQL
Sbjct: 272 LAALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILEGVQTLLQL 331
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 332 SGCVARLC 339
>gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392861939|gb|EAS37458.2| replication factor C subunit 4 [Coccidioides immitis RS]
Length = 352
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/313 (59%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG +
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDVY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPG+HK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E++ +++DG+
Sbjct: 151 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEAEDVKYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACYEGKVDSA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +FRV KT+ +PE KL I+EIG H+RI EG+ + +QL
Sbjct: 271 LDTLTELWDLGYSSHDIISTMFRVTKTIPSLPEHSKLEFIKEIGFTHMRILEGLQTFVQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCKINMK 343
>gi|296810064|ref|XP_002845370.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
gi|238842758|gb|EEQ32420.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
Length = 352
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/313 (59%), Positives = 251/313 (80%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDTY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E + +++DG+
Sbjct: 151 EIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEAEKVKYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDIA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L+ LGY+ DII +FRV KT+ ++ E KL I+EIG H+RI EG+ +++QL
Sbjct: 271 LDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMRILEGLQTIVQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCIAKLCKINMK 343
>gi|453087153|gb|EMF15194.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 349
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 247/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 28 VEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGEAY 87
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGR KIVILDEADSMT GAQQALRRTM
Sbjct: 88 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKIVILDEADSMTSGAQQALRRTM 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++ +IC+ EN+ ++DGL
Sbjct: 148 EIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRINQICKAENVQFSDDGL 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V ++ VF+V D PHP+ V+ M+ +C E N+ ++
Sbjct: 208 AALVFSAEGDMRQAINNLQSTHAGFGFVNSDNVFRVVDSPHPIKVQAMIKSCHERNVDEA 267
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII ++F+V KT+ + E KL I+EIG H+RI EGV + LQL
Sbjct: 268 LDALKELWGLGYSSHDIISSMFKVTKTIPSLAEHTKLEFIREIGFTHMRILEGVQTYLQL 327
Query: 300 SGLLARLC 307
+G +A+LC
Sbjct: 328 AGCIAKLC 335
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTD Q++ ++++I E E + +++DGL
Sbjct: 156 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDQQVVKRLLQIIETEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V + VFKV D PHP+ V+ M+ C EG + +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGLVNGDNVFKVVDSPHPIKVQAMIKACYEGKIDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT++ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LETLNELWGLGYSSHDIISTMFRVTKTVNTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 336 SGCIARLC 343
>gi|15221697|ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana]
gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana]
gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana]
gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana]
Length = 333
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/309 (62%), Positives = 241/309 (77%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLG ++
Sbjct: 18 VEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTNY 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRT+
Sbjct: 78 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTI 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFALACN S KIIEPIQSRCA++R+++L+D Q+L +++ + E + + +GL
Sbjct: 138 EIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK ++ N +E +
Sbjct: 198 EAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLESKFDIA 257
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S LQL
Sbjct: 258 CDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLC 317
Query: 301 GLLARLCIV 309
GLLA+L IV
Sbjct: 318 GLLAKLSIV 326
>gi|332255015|ref|XP_003276631.1| PREDICTED: replication factor C subunit 2 [Nomascus leucogenys]
Length = 322
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/307 (64%), Positives = 235/307 (76%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 41 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 100
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASND SMTDGAQQALRRTM
Sbjct: 101 KDAVLELNASND----------------------------------SMTDGAQQALRRTM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD Q+L++++ + EKE + +T+DGL
Sbjct: 127 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDTQILTRLMNVIEKERVPYTDDGL 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 187 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 246
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGN+FRV KT + E LKL I+EIG H++I EGVNSLLQ++
Sbjct: 247 YKILAHLWHLGYSPEDIIGNVFRVCKTFQMAEYLKLEFIKEIGYTHMKIVEGVNSLLQMA 306
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 307 GLLARLC 313
>gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei]
gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei]
Length = 329
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/314 (62%), Positives = 245/314 (78%), Gaps = 4/314 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGNE+ V RL+V + GNVPNII+SGPPG+GKTT++ LAR LLG
Sbjct: 13 VEKYRPQVLSDIVGNENMVSRLEVIAKEGNVPNIILSGPPGIGKTTSVWALARELLGDKV 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ KVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 73 KEAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS TTRFALACN SEKIIEPIQSRCA+LRY KL+ +LL +V E+ + E++++ + GL
Sbjct: 133 ELYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVELLYRVKEVAKAESVNYDDGGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQ+T N + V E V KVCDEPHP + +MLL C E ++
Sbjct: 193 EAILFTAQGDMRQALNNLQATVNAYERVNKENVLKVCDEPHPDLMIKMLLYCTEKKFFEA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD----IPEPLKLSIIQEIGNVHLRISEGVNSL 296
KIIH ++LG++ +DI+ +FRV KT++ + E L++ I+EIG H+R+ +G+ S
Sbjct: 253 AKIIHEFHRLGFSSDDILSTLFRVVKTVELSKNVSEQLRMQYIKEIGVCHMRVVQGLTSK 312
Query: 297 LQLSGLLARLCIVG 310
LQLS L+A LC V
Sbjct: 313 LQLSRLVADLCRVS 326
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/308 (60%), Positives = 245/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN DT++RLKV + GN P+++ISG PG+GKTT++LCLAR LLG ++
Sbjct: 25 VEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGDAY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RG+D VRNKIK FAQ+KV+LPPGRHKIVILDEADSMT AQQALRRTM
Sbjct: 85 KEGVLELNASDERGVDIVRNKIKNFAQKKVSLPPGRHKIVILDEADSMTPAAQQALRRTM 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRF ACN S KIIEPIQSRCA+LRY K+ D Q+L +++EIC+ E + ++++GL
Sbjct: 145 EIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKRLLEICKMEGVEYSDEGL 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FT++GDMRQA+NNLQST+ G G V E VFKVCD+PHP ++ +L+ C +G + ++
Sbjct: 205 GAIIFTSEGDMRQAINNLQSTYTGLGFVNPENVFKVCDQPHPFLIRSLLMACKKGVVDEA 264
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + ++ GYA DI+ +FRV KTLD +PE KL I+EIG H++I EGV +++QL
Sbjct: 265 MEKLDEIWSKGYAAVDIVTTLFRVVKTLDGVPEATKLEFIKEIGWTHMKILEGVATVVQL 324
Query: 300 SGLLARLC 307
GL+ARLC
Sbjct: 325 GGLIARLC 332
>gi|73957663|ref|XP_857196.1| PREDICTED: replication factor C subunit 2 isoform 3 [Canis lupus
familiaris]
Length = 318
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/307 (63%), Positives = 237/307 (77%), Gaps = 34/307 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASND SMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASND----------------------------------SMTDGAQQALRRTM 122
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 123 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGL 182
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNN+QST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 183 EAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 242
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 243 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 302
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 303 GLLARLC 309
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/314 (63%), Positives = 253/314 (80%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP SDIVGN+D + RL+V + GN+PN+I++GPPG GKTT+IL LA LLG ++
Sbjct: 20 VEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGSNY 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ V+ELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 80 KEGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQQALRRTM 139
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+SN+TRFALACN S KIIEPIQSRCA++R++KL+D ++L +++ + E E +++ +GL
Sbjct: 140 EIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMRVVEAEKVAYVPEGL 199
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T++GF V E VFKVCD+PHPL VK M+ N +EGN ++
Sbjct: 200 EAIIFTADGDMRQALNNLQATYSGFQFVNQENVFKVCDQPHPLHVKSMVQNVLEGNFDEA 259
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ +LY LGY+ DII +FRV K D+PE LKL I+E G H+RIS+GV SLLQLS
Sbjct: 260 CSRLKNLYDLGYSATDIITTLFRVIKNYDMPEYLKLEFIRETGFAHMRISDGVGSLLQLS 319
Query: 301 GLLARLCIVGSKNK 314
GLLA+L IV +K
Sbjct: 320 GLLAKLSIVRDTSK 333
>gi|242823966|ref|XP_002488166.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713087|gb|EED12512.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 815
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 247/313 (78%), Gaps = 1/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG ++
Sbjct: 31 VEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQMLGNAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTPGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTD Q++ ++ +ICE E + + DG+
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKRLSQICEAEKVEFSEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDSA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV +LLQL
Sbjct: 271 LDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHAKLEFIKEIGFTHMRILDGVGTLLQL 330
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 331 SGCVAKLCKINMK 343
>gi|406861841|gb|EKD14894.1| replication factor C [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 363
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/316 (60%), Positives = 246/316 (77%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 43 VEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 102
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GR K+VILDEADSMT GAQQALRRTM
Sbjct: 103 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRQKLVILDEADSMTSGAQQALRRTM 162
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++I E E + + DGL
Sbjct: 163 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLLQIIEAEKVEYAEDGL 222
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EG + +
Sbjct: 223 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGKVDAA 282
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ LGY+ DII +FRV KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 283 LETLKELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 342
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARL + +KK
Sbjct: 343 SGCVARLAKLNMDSKK 358
>gi|169598013|ref|XP_001792430.1| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
gi|160707641|gb|EAT91453.2| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
Length = 376
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 53 VEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDAY 112
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGR K+VILDEADSMT GAQQALRRTM
Sbjct: 113 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSMTSGAQQALRRTM 172
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ +++++ E E++ +++DGL
Sbjct: 173 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQVIEAEDVKYSDDGL 232
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST+ GFG V + VFKV D PHP+ V+ M+ C E + D+
Sbjct: 233 AALVFSAEGDMRQAINNLQSTNAGFGFVNGDNVFKVVDSPHPIKVQVMIKACHETRINDA 292
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +FRV KT+D + E KL I+EIG H+RI EGV +LLQL
Sbjct: 293 MVSLKELWDLGYSCHDIISTMFRVTKTIDTLSEHAKLEFIKEIGFTHMRILEGVQTLLQL 352
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 353 SGCIARLC 360
>gi|449300715|gb|EMC96727.1| hypothetical protein BAUCODRAFT_34119 [Baudoinia compniacensis UAMH
10762]
Length = 350
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/308 (61%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 30 VEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHLIISGMPGIGKTTSILCLARQLLGDAY 89
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHKIVILDEADSMT GAQQALRRTM
Sbjct: 90 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKIVILDEADSMTSGAQQALRRTM 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++ +IC+ EN+ +++DG+
Sbjct: 150 EIYSGTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLYQICKAENVEYSDDGI 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ ML +C E + ++
Sbjct: 210 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFRVVDSPHPVKVQAMLKSCQEQKVDEA 269
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +FRV KTL + E KL I+EIG H+RI EGV + LQL
Sbjct: 270 LDSLQELWGLGYSSHDIITTMFRVTKTLPSLSEHSKLEFIREIGFTHMRILEGVQTYLQL 329
Query: 300 SGLLARLC 307
+G +A+LC
Sbjct: 330 AGCVAKLC 337
>gi|315044711|ref|XP_003171731.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
gi|311344074|gb|EFR03277.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
Length = 354
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/315 (59%), Positives = 252/315 (80%), Gaps = 3/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDTY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E + +++DG+
Sbjct: 151 EIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEAEKVKYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEGKVDIA 270
Query: 241 YKIIHHLY--KLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ L+ +LGY+ DII +FRV KT+ ++ E KL I+EIG H+RI EG+ +L+
Sbjct: 271 LDTLNELWYVELGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMRILEGLQTLV 330
Query: 298 QLSGLLARLCIVGSK 312
QLSG +A+LC + K
Sbjct: 331 QLSGCIAKLCKINMK 345
>gi|341889869|gb|EGT45804.1| hypothetical protein CAEBREN_18241 [Caenorhabditis brenneri]
Length = 326
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/311 (62%), Positives = 241/311 (77%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGNE+ V+RLKV + GN+PN+I+SGPPG GKTT++ +AR LLG
Sbjct: 13 VEKYRPQLLSDIVGNENNVDRLKVIAKEGNLPNVILSGPPGCGKTTSVWAVARELLGDKV 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS++RGID VRN+IK FAQ KVTLP GRHKI+ILDEADSMT+GAQQALRRTM
Sbjct: 73 KDAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRHKIIILDEADSMTEGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS TTRFALACN SEK+IEPIQSRC +LRY KL+ +LL +V EI + EN+++ + GL
Sbjct: 133 ELYSKTTRFALACNQSEKVIEPIQSRCCLLRYQKLSPVELLVRVKEIAKAENVNYDDGGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQ+T N + V E V KVCDEPHP + +ML+ C E ++
Sbjct: 193 EAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMVKMLMYCTEKKFFEA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD----IPEPLKLSIIQEIGNVHLRISEGVNSL 296
KIIH Y+LG++ +DII +FRV KT+D + E L+ I+EI H+RI +G+ S
Sbjct: 253 CKIIHEFYRLGFSADDIISTLFRVVKTIDLSKKVTEALRAEYIREIACCHMRICQGLTSK 312
Query: 297 LQLSGLLARLC 307
LQLS L+A LC
Sbjct: 313 LQLSRLVAGLC 323
>gi|452986023|gb|EME85779.1| hypothetical protein MYCFIDRAFT_41166 [Pseudocercospora fijiensis
CIRAD86]
Length = 353
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/308 (60%), Positives = 245/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 32 VEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDAY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GR KIVILDEADSMT GAQQALRRTM
Sbjct: 92 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQKIVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++ +ICE E + +++DG+
Sbjct: 152 EIYSGTTRFAFACNLSNKIIEPLQSRCAILRYSRLTDAQVVKRLYQICEAEKVEYSDDGI 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V + VF+V D PHP+ V+ M+ +C EG + ++
Sbjct: 212 AALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQAMIKSCQEGKIDEA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H+RI EGV + LQL
Sbjct: 272 LDDLKELWNLGYSSHDIISTMFKVTKTIPSLSEHTKLEFIREIGFTHMRILEGVQTYLQL 331
Query: 300 SGLLARLC 307
+G +A+LC
Sbjct: 332 AGCVAKLC 339
>gi|346319917|gb|EGX89518.1| activator 1 37 kDa subunit [Cordyceps militaris CM01]
Length = 361
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/309 (61%), Positives = 247/309 (79%), Gaps = 2/309 (0%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKD 62
+YRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+K+
Sbjct: 36 QYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARELLGESYKE 95
Query: 63 AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI 122
AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHK++ILDEADSMT GAQQALRRTMEI
Sbjct: 96 AVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLIILDEADSMTSGAQQALRRTMEI 155
Query: 123 YSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEA 182
YSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ++ ++++I E E + +++DGL A
Sbjct: 156 YSNTTRFAFACNMSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEYSDDGLAA 215
Query: 183 IVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYK 242
+VF+A+GDMRQA+NNLQST++GFG V+ + VFKV D PHP+ V+ M+ C EGN+ +
Sbjct: 216 LVFSAEGDMRQAINNLQSTYSGFGFVSGDNVFKVVDSPHPIKVQAMIKACYEGNVDSALD 275
Query: 243 IIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSG 301
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQLSG
Sbjct: 276 ALRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQLSG 335
Query: 302 LLARLCIVG 310
+A +VG
Sbjct: 336 CVAE-AVVG 343
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/308 (61%), Positives = 242/308 (78%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 38 VEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSVLCLARQLLGDAY 97
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VR +IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 98 KEAVLELNASDERGIDVVRQRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTM 157
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTD Q++ ++++I + E + + DGL
Sbjct: 158 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQIIDAEGVKFSEDGL 217
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 218 AALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 277
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +FRV KT++ + E KL I+EIG H+++ EGV +LLQL
Sbjct: 278 LDTLRELWDLGYSSHDIISTMFRVTKTIETLSEHSKLEFIKEIGFTHMKVLEGVQTLLQL 337
Query: 300 SGLLARLC 307
SG + RLC
Sbjct: 338 SGCVVRLC 345
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 248/307 (80%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN +T+ERLKV + GN P+IIISG PG+GKTT+I CLA LLG ++
Sbjct: 24 VEKYRPKVLDDVVGNIETIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGNAY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGI+ VRNKIK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 84 KEGVLELNASDERGIEVVRNKIKTFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+NTTRF LACN S KIIEPIQSRCA+LRY+KL D +LL +++EICE E + + +DGL
Sbjct: 144 EIYANTTRFCLACNMSNKIIEPIQSRCAILRYSKLRDTELLKRLLEICELEKVKYNDDGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FT++GDMRQA+NNLQST +GFG V+ + VFKVCD+PHP+ V+ ++ C + ++ +
Sbjct: 204 TALIFTSEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITVQTIIRACQKSDLDTA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L++ GY+ DI+ IFRV KT+ D+PE +L I+EIG H+RI EGV +++QL
Sbjct: 264 MEKLNDLWEQGYSAVDIVVTIFRVVKTMDDLPEYTELEYIKEIGFTHMRILEGVGTIIQL 323
Query: 300 SGLLARL 306
GL+ARL
Sbjct: 324 GGLIARL 330
>gi|403411420|emb|CCL98120.1| predicted protein [Fibroporia radiculosa]
Length = 361
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 249/330 (75%), Gaps = 18/330 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIIS-----------------GPPGVG 43
+EKYRP DIVGN +T+ERLKV + GN P+IIIS G PG+G
Sbjct: 26 VEKYRPHALDDIVGNTETIERLKVIAKDGNCPHIIISVGPPKHPFFARLMARPKGMPGIG 85
Query: 44 KTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILD 103
KTT+I CLA LLG ++K+ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHKIVILD
Sbjct: 86 KTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVILD 145
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT GAQQALRRTMEIY+NTTRFALACN S KIIEPIQSRCA+LRY KL D ++L +
Sbjct: 146 EADSMTPGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDTEILKR 205
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
++EICE E + + +DGL A++FT++GDMRQA+NNLQST++GF V+ + VFKVCD+PHP+
Sbjct: 206 LLEICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQSTNSGFSFVSGDNVFKVCDQPHPI 265
Query: 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEI 282
V+ ++ C++ N+ D+ ++ L+ GY+ DII IFRV KT D +PE KL I+EI
Sbjct: 266 IVQSIIRACLKSNIDDAMDKLNELWDQGYSAVDIIVTIFRVVKTFDEMPEYTKLEYIKEI 325
Query: 283 GNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
G H+RI EGV +L+QL GL+ARLC + K
Sbjct: 326 GWTHMRILEGVGTLIQLGGLMARLCKMNMK 355
>gi|189195266|ref|XP_001933971.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979850|gb|EDU46476.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 353
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 244/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 32 VEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDAY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTL PGR K+VILDEADSMT GAQQALRRTM
Sbjct: 92 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E++ +++DG+
Sbjct: 152 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIVEAEDVKYSDDGI 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V + VFKV D PHP+ V+ M+ C E + D+
Sbjct: 212 AALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAMIKACHEQRIDDA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+D + E KL I+EIG H+RI EGV +LLQL
Sbjct: 272 LASLKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILEGVQTLLQL 331
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 332 SGCIARLC 339
>gi|401881925|gb|EJT46203.1| subunit of heteropentameric Replication factor C (RF-C), Rfc3p
[Trichosporon asahii var. asahii CBS 2479]
gi|406701041|gb|EKD04197.1| subunit of heteropentameric Replication factor C (RF-C), Rfc3p
[Trichosporon asahii var. asahii CBS 8904]
Length = 335
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 245/308 (79%), Gaps = 8/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN +TVERLKV + GN+P+IIIS TT+I CLA LLG ++
Sbjct: 24 VEKYRPQYLSDIVGNTETVERLKVIAEDGNMPHIIIS-------TTSIHCLAHALLGDAY 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS++RGID VRNKIK FAQ+KVTLPPGRHK++ILDEADSMT GAQQALRRTM
Sbjct: 77 REGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKMIILDEADSMTAGAQQALRRTM 136
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY+KL DA++L ++ EICE E + + ++GL
Sbjct: 137 EIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLRDAEVLKRLKEICEAERVKYNDEGL 196
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++FTA+GDMRQA+NNLQST +GFG V+ + VFK+CD+PHP+ ++ M+L C +GN+ +
Sbjct: 197 AALIFTAEGDMRQAINNLQSTWSGFGFVSNDNVFKICDQPHPIILRNMILECSKGNVDTA 256
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ IH L+ GY+ DI+ +IFRV K + D+PE KL I+EIG H+R+ EGV +L QL
Sbjct: 257 LETIHSLWDKGYSAVDIVVSIFRVVKGMDDLPEYTKLEFIREIGWTHMRVLEGVGTLTQL 316
Query: 300 SGLLARLC 307
++ARLC
Sbjct: 317 GAMIARLC 324
>gi|330945949|ref|XP_003306663.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
gi|311315764|gb|EFQ85258.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
Length = 353
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 244/308 (79%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 32 VEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDAY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTL PGR K+VILDEADSMT GAQQALRRTM
Sbjct: 92 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E++ +++DG+
Sbjct: 152 EIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIVEAEDVKYSDDGI 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V + VFKV D PHP+ V+ M+ C E + D+
Sbjct: 212 AALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAMIKACHEQRVDDA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+D + E KL I+EIG H+RI EGV +LLQL
Sbjct: 272 LTSLKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMRILEGVQTLLQL 331
Query: 300 SGLLARLC 307
SG +ARLC
Sbjct: 332 SGCVARLC 339
>gi|302510945|ref|XP_003017424.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|302657578|ref|XP_003020508.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
gi|291180995|gb|EFE36779.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|291184348|gb|EFE39890.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
Length = 362
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/323 (58%), Positives = 252/323 (78%), Gaps = 11/323 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDTY 90
Query: 61 KDAVLELNASNDRG----------IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 110
K+AVLELNAS++RG ID VRN+IK FAQ+KVTLPPGRHK+VILDEADSMT
Sbjct: 91 KEAVLELNASDERGLLNYALNLFRIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTS 150
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
GAQQALRRTMEI+S TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE
Sbjct: 151 GAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEA 210
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL 230
E + +++DG+ A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+
Sbjct: 211 EKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIK 270
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRI 289
C EG + + ++ L++LGY+ DII +FRV KT+ ++ E KL I+EIG H+RI
Sbjct: 271 ACWEGKVDIALDTLNELWELGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMRI 330
Query: 290 SEGVNSLLQLSGLLARLCIVGSK 312
EG+ +L+QLSG +A+LC + K
Sbjct: 331 LEGLQTLVQLSGCIAKLCKINMK 353
>gi|66802182|ref|XP_629875.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74851260|sp|Q54E21.1|RFC2_DICDI RecName: Full=Probable replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|60463272|gb|EAL61464.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 338
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 248/315 (78%), Gaps = 1/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TV RL+ S GN+PNIIISGPPG GKT++ILCLAR LLG ++
Sbjct: 23 VEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGANY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AV ELNAS+DR +D VR+KIK FA +KVTLP GRHKI+ILDE DSMT GAQQALRR M
Sbjct: 83 KEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQQALRRIM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEPIQSRCA+LR+ +L+D+Q+L+++ E+ + E + +T+DGL
Sbjct: 143 EIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FTA+GDMRQALNNLQ+TH+GFG + AE V KVCD+PHPL +K+++ C + + K++
Sbjct: 203 AAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDFKEA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y + L+ GY+ DII +F + K+ +IPE KL ++EIG +LR + GVN+L+QL
Sbjct: 263 YPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTLVQL 322
Query: 300 SGLLARLCIVGSKNK 314
+GLL++LC+V K K
Sbjct: 323 TGLLSKLCLVSIKMK 337
>gi|164426330|ref|XP_001728317.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
gi|157071292|gb|EDO65226.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
Length = 353
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/316 (60%), Positives = 246/316 (77%), Gaps = 5/316 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P+ IISG PG+GKTT++LCLAR LLG ++
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGDAY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++R VR +IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDER----VRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LR+ KLTDAQ++ ++++I E E + +++DGL
Sbjct: 152 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEYSDDGL 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 212 AALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDAA 271
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 272 LDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 331
Query: 300 SGLLARLCIVGSKNKK 315
SG +ARLC + KK
Sbjct: 332 SGCVARLCKLNMDPKK 347
>gi|440632243|gb|ELR02162.1| replication factor C subunit 2/4 [Geomyces destructans 20631-21]
Length = 357
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/307 (61%), Positives = 244/307 (79%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNVETIERLKIIAREGNMPHMIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GR K+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRQKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E EN+ +++DGL
Sbjct: 156 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAENVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NN QST GFG V+ + VFKV D PHP+ V+ ML +C EG + +
Sbjct: 216 AALVFSAEGDMRQAINNCQSTWAGFGFVSGDNVFKVVDSPHPIKVQAMLKSCYEGKVDAA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ LGY+ DII +FRV KT+ + E KL I+EIG H++I EGV +LLQL
Sbjct: 276 LESLKELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
Query: 300 SGLLARL 306
S +ARL
Sbjct: 336 SACVARL 342
>gi|338712629|ref|XP_003362742.1| PREDICTED: replication factor C subunit 2-like isoform 2 [Equus
caballus]
Length = 319
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/308 (64%), Positives = 235/308 (76%), Gaps = 35/308 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKV-FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+EKYRP ++IVGNEDTV RL+V GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVSLCREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 96
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
KDAVLELNASND SMTDGAQQALRRT
Sbjct: 97 LKDAVLELNASND----------------------------------SMTDGAQQALRRT 122
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ I EKEN+ +T+DG
Sbjct: 123 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTIIEKENVPYTDDG 182
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAIVFTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV ++
Sbjct: 183 LEAIVFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNADIDG 242
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I++GVNSLLQ+
Sbjct: 243 AYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHVKIADGVNSLLQM 302
Query: 300 SGLLARLC 307
+GLLARLC
Sbjct: 303 AGLLARLC 310
>gi|398390788|ref|XP_003848854.1| replication factor C subunit 4 [Zymoseptoria tritici IPO323]
gi|339468730|gb|EGP83830.1| hypothetical protein MYCGRDRAFT_76271 [Zymoseptoria tritici IPO323]
Length = 351
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/318 (58%), Positives = 246/318 (77%), Gaps = 1/318 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 31 VEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GR KIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQKIVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY +LTD Q++ ++ +IC+ E + +++DG+
Sbjct: 151 EIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLYQICQAEKVEYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V + VF+V D PHP+ V+ M+ NC E + D+
Sbjct: 211 AALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQAMIKNCQEQKIDDA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V KT+ + E KL I+EIG H+RI EG+ + LQL
Sbjct: 271 LDGLKELWDLGYSSHDIISTMFKVTKTIPSLSEHTKLEFIREIGFTHMRILEGMQTYLQL 330
Query: 300 SGLLARLCIVGSKNKKTD 317
+G +A+LC + K + D
Sbjct: 331 AGCVAKLCKLNMKPQLFD 348
>gi|296419853|ref|XP_002839506.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635667|emb|CAZ83697.1| unnamed protein product [Tuber melanosporum]
Length = 358
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 243/307 (79%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 33 VEKYRPIFLEDIVGNSETVERLKIIGKDGNMPHLIISGMPGIGKTTSVLCLARALLGDAY 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGR K+VILDEADSMT GAQQALRRTM
Sbjct: 93 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKVVILDEADSMTAGAQQALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ+L +++EIC E + H+ +GL
Sbjct: 153 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVLHRLLEICLAEKVEHSEEGL 212
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++F+A+GDMRQA+NNLQST GFG V+A+ VFKV D PHP+AV+ ++ C G + +
Sbjct: 213 AALIFSAEGDMRQAINNLQSTVAGFGFVSADNVFKVVDSPHPIAVQALIKACYTGKIDAA 272
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ GY+ DII +FRV KT+D + E KL I+ IG H+RI EGV +LLQL
Sbjct: 273 LEKLEELWGKGYSAIDIISTMFRVTKTVDALSEHSKLEFIKVIGFTHMRILEGVATLLQL 332
Query: 300 SGLLARL 306
G +A+L
Sbjct: 333 RGCIAKL 339
>gi|70984108|ref|XP_747574.1| DNA replication factor C subunit Rfc4 [Aspergillus fumigatus
Af293]
gi|66845201|gb|EAL85536.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
fumigatus Af293]
gi|159122360|gb|EDP47481.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
fumigatus A1163]
Length = 348
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 247/313 (78%), Gaps = 5/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGEAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI ++IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGI----SRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 146
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEPIQSRCA+LRY +LTDAQ++ ++ +IC+ E + HT DG+
Sbjct: 147 EIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKRLKQICDAEKVEHTEDGI 206
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 207 AALVFSAEGDMRQAINNLQSTWSGFGLVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAA 266
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 267 LETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 326
Query: 300 SGLLARLCIVGSK 312
SG +++LC + K
Sbjct: 327 SGCVSKLCKINMK 339
>gi|443920619|gb|ELU40509.1| replication factor C subunit 4 [Rhizoctonia solani AG-1 IA]
Length = 411
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/307 (60%), Positives = 245/307 (79%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT +DIVGN +T++RLKV + GN P+IIISG PG+GKTT+I CLA +LG ++
Sbjct: 21 VEKYRPQTLNDIVGNVETIDRLKVIAQDGNCPHIIISGMPGIGKTTSIHCLAHAMLGDAY 80
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADS--MTDGAQQALRR 118
K+ VLELNAS++RGID VR KIK FAQ+KVTLPPGRHKIVILDEAD MT GAQQA+RR
Sbjct: 81 KEGVLELNASDERGIDVVRGKIKAFAQKKVTLPPGRHKIVILDEADRWVMTTGAQQAMRR 140
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TMEI+S+TTRFALACN + KIIEPIQSRCA+LRY KL D ++L +V+E+CE E + + ++
Sbjct: 141 TMEIFSSTTRFALACNQANKIIEPIQSRCAVLRYAKLRDEEVLKRVLEVCEMEKVKYNDE 200
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GL A++FTA+GD+RQALNNLQSTH GFG V+A+ VF+VCD+PHP+ V+E++ C G++
Sbjct: 201 GLTALLFTAEGDLRQALNNLQSTHAGFGFVSADNVFRVCDQPHPVIVQEIIRACQNGDID 260
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ ++ L+ GY+ DI+ +FRV KT D+PE +KL I+EIG H+R+ EGV +L+
Sbjct: 261 SAMSKLNELWHNGYSAVDIVTTLFRVTKTFDDLPEYMKLEFIKEIGWTHMRVLEGVGTLV 320
Query: 298 QLSGLLA 304
QL GL+
Sbjct: 321 QLGGLMG 327
>gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
Length = 371
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 181/307 (58%), Positives = 243/307 (79%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN TVERL+ GN P++++SG PG+GKTT++ CLA LLG ++
Sbjct: 18 VEKYRPRYLRDVVGNSATVERLRAIEEHGNCPHLLLSGLPGIGKTTSVHCLAHALLGDAY 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VR+KIK FAQ+KV+LPPGRHKI++LDEADSMT GAQQALRRTM
Sbjct: 78 KEAVLELNASDDRGIDVVRSKIKAFAQKKVSLPPGRHKIIVLDEADSMTPGAQQALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+ TTRF ACN S KIIEPIQSRCA+LR+ +++D +LL ++++ICE E++ ++++GL
Sbjct: 138 EIYAPTTRFCFACNQSNKIIEPIQSRCAILRFGRISDEELLRRLLQICEAEHVKYSDEGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VFTA+GDMRQA+NNLQST G G+V+ + VFKVCD+PHPL V+++L C G + +
Sbjct: 198 AAVVFTAEGDMRQAVNNLQSTWTGMGYVSPDNVFKVCDQPHPLVVRDVLDKCYAGRVDSA 257
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DI+ +FRV +T+D +PE +KL I+EIG H+R EGV +LLQL
Sbjct: 258 LDQLESLWSLGYSSLDIVTTLFRVVRTMDSLPEAVKLEYIREIGWTHMRTLEGVATLLQL 317
Query: 300 SGLLARL 306
S L+ARL
Sbjct: 318 SALVARL 324
>gi|384501081|gb|EIE91572.1| hypothetical protein RO3G_16283 [Rhizopus delemar RA 99-880]
Length = 343
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/316 (58%), Positives = 246/316 (77%), Gaps = 1/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+ V RL + GN+PN+I++G PG+GKTT+I+CLA +LG S+
Sbjct: 27 VEKYRPLYLKDIVGNEEAVSRLMTIAKDGNMPNLILTGMPGIGKTTSIVCLAHEMLGASY 86
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS+DRGID +R++IK FAQ+KVTLPPG HKI+ILDEADSMT GAQQALRRTM
Sbjct: 87 KDAVLELNASDDRGIDVIRSRIKTFAQKKVTLPPGMHKIIILDEADSMTGGAQQALRRTM 146
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSR A+LRY KLT+ ++L +++EIC+ E +++ ++GL
Sbjct: 147 EIYSNTTRFALACNQSNKIIEPIQSRTAVLRYTKLTNEEVLKRLLEICQMEKVNYNDEGL 206
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA GDMRQA+NNLQST GF +V AE VFKVCD+PHP+ + ++ C E + ++
Sbjct: 207 EALIFTADGDMRQAINNLQSTFYGFKYVNAENVFKVCDQPHPMVAQHIITCCSEVKLDEA 266
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + LY LGY+ DII FR+ ++ + + E L+L ++EIG H+RI +G S+LQL
Sbjct: 267 VQCMEELYYLGYSALDIITTFFRMVRSYNALDEGLRLDYLKEIGLTHMRILDGHQSILQL 326
Query: 300 SGLLARLCIVGSKNKK 315
SG++ARLC + K+
Sbjct: 327 SGMVARLCNIALSKKQ 342
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/308 (60%), Positives = 247/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNEDT+ RLKV + GN+P++IISG PG+GKTT++LCLA LLG ++
Sbjct: 26 VEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMIISGMPGIGKTTSVLCLAHQLLGSAY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS++RGID VRNKIK FAQ+KV LPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 86 REGVLELNASDERGIDVVRNKIKGFAQKKVNLPPGRHKIVILDEADSMTAGAQQALRRTM 145
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY++L + Q+ ++ EIC+ E++S T+DG+
Sbjct: 146 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLNEQQIQKRLSEICKAESVSITDDGM 205
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ TA+GDMRQA+NNLQST GF V +E VFKV D+P P+AV +M+ +C+ G++ +
Sbjct: 206 AALIMTAEGDMRQAINNLQSTVAGFDLVNSENVFKVADQPSPVAVLDMIRHCMHGDIDKA 265
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + ++ LG++P DII +FRV KT+ ++PE +L +++EIG+ H+ + EGV + LQL
Sbjct: 266 LERLKGIWGLGFSPVDIITTMFRVVKTMNEVPEYSRLEMLREIGSAHMIVLEGVQTYLQL 325
Query: 300 SGLLARLC 307
S L+ARL
Sbjct: 326 SALIARLA 333
>gi|17541988|ref|NP_500069.1| Protein RFC-2 [Caenorhabditis elegans]
gi|351021221|emb|CCD63484.1| Protein RFC-2 [Caenorhabditis elegans]
Length = 334
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 242/313 (77%), Gaps = 4/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +DIVGNE+ VERLKV GNVPNI++SGPPG GKTT++ LAR LLG
Sbjct: 13 VEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKV 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VR++IK FAQ KVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 73 KEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ TTRFALACN SEKIIEPIQSRCA+LRY KL+ QLL++V E+ + E +++ + GL
Sbjct: 133 EMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQ+T N + V E V KVCDEPHP + +ML C + ++
Sbjct: 193 EAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTDRKFFEA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD----IPEPLKLSIIQEIGNVHLRISEGVNSL 296
KIIH ++LG++ +DI+ +FRV KT++ + E L++ I++I H+RI +G+ S
Sbjct: 253 SKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGLTSK 312
Query: 297 LQLSGLLARLCIV 309
LQLS L+A LC V
Sbjct: 313 LQLSRLIADLCRV 325
>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/308 (58%), Positives = 243/308 (78%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D+VG+ +TVERLK+ + GN+PN++ISG PG+GKTT++ CLAR LLGP
Sbjct: 21 VEKYRPMYLDDVVGHTETVERLKIMAKDGNIPNLLISGLPGIGKTTSVHCLARTLLGPQL 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+KDAVLELNAS+DRGI+ VR KIK FAQ+KVT+PPG+HKI+ILDEADSMT GAQ AL+RT
Sbjct: 81 YKDAVLELNASDDRGIEVVRGKIKNFAQKKVTMPPGKHKIIILDEADSMTAGAQNALKRT 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+YS+TTRFA ACN S KIIE IQSRCA+LR+ +L++ Q+L +++ I E EN+ ++DG
Sbjct: 141 MELYSDTTRFAFACNQSNKIIEAIQSRCAILRFGRLSNEQVLERLLHIVEAENVQCSDDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L A++F+A+GDMRQA+NNLQ T +GFG V + V+KV D PHP+ VK ML C +G + +
Sbjct: 201 LSALIFSAEGDMRQAINNLQGTVSGFGFVNSSNVWKVVDSPHPVVVKSMLDACSKGEVTE 260
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + + L+ GY+ +DII +FRV KTL++PE L+L I+EIG H+RI EG+ + LQL
Sbjct: 261 ACESLKQLWTKGYSAQDIISTMFRVTKTLEVPEALRLEYIKEIGFTHMRILEGITTYLQL 320
Query: 300 SGLLARLC 307
+G +ARLC
Sbjct: 321 AGCVARLC 328
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/318 (58%), Positives = 252/318 (79%), Gaps = 3/318 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+E+YRP DIVGNE+ V RL+V + GN+PN+I+SGPPG GKTT+I+CLAR LLG
Sbjct: 20 VERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGTGKTTSIMCLARSLLGKEV 79
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+K+AVLELNAS++R +D VRNKIK FAQ+KV LPP RHKIVILDEADSMT AQQA+RR
Sbjct: 80 YKEAVLELNASDERTLDVVRNKIKQFAQKKVNLPPNRHKIVILDEADSMTSAAQQAMRRI 139
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYS+TTRFALACN+S KIIEPIQSRCA++RY +LTDA+LL+++I ICE E++ T DG
Sbjct: 140 MEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDAELLTRLIVICELEHVQKTEDG 199
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE+I++T+ GDMR A+N+LQ+T+ GFG V A VFKVCD+PHP+A++ ++ +C++G++
Sbjct: 200 LESILYTSDGDMRNAINSLQATYQGFGIVNATNVFKVCDQPHPVAIQTIIGSCIQGDLMS 259
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKT--LDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S K + L GY+ +D+I + +V ++ + +PE +L I+EIG+ HLRIS+GV++ L
Sbjct: 260 SQKELTKLMGEGYSSQDVISTLSKVVRSGAVQMPEYAQLQFIKEIGDCHLRISDGVDTPL 319
Query: 298 QLSGLLARLCIVGSKNKK 315
QL+ LLARLC + +KK
Sbjct: 320 QLTALLARLCKIIITSKK 337
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/307 (61%), Positives = 244/307 (79%), Gaps = 4/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNEDTV+RL+ ++ GN+P++IISG PG+GKTT+I CLA LLG ++
Sbjct: 12 VEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHELLGDAY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGI+ VRN+IK FAQ+K TLP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 72 SQAVLELNASDDRGIEVVRNQIKHFAQKKCTLPAGKHKIIILDEADSMTSGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFA ACN S KIIEP+QSRCA+LRY+KLTD Q+L +++EI + E++ +TNDGL
Sbjct: 132 ELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDEQVLKRLLEIIKLEDVQYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST GFG V E VF++ D PHPL VK MLL+ G++ +S
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGFGLVNGENVFQIVDSPHPLIVKRMLLS---GSLDES 248
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ GY+ DI+ FRV K LD + E ++L +I+EIG H+RI EGV + LQL
Sbjct: 249 LQYLKELWVKGYSAVDIVITCFRVMKNLDEVKETVRLEMIKEIGFTHMRILEGVGTHLQL 308
Query: 300 SGLLARL 306
SG+LA++
Sbjct: 309 SGMLAKI 315
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/309 (59%), Positives = 245/309 (79%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TVERLK+ + GN+PN+IISG PG+GKTT++ CLA LLG +
Sbjct: 14 VEKYRPYKLQDIVGNEETVERLKIIAKDGNMPNMIISGLPGIGKTTSVHCLAHELLGEYY 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
A LELNAS+DRGID VRNKIK FAQ K+ LPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 74 HQATLELNASDDRGIDVVRNKIKQFAQTKIVLPPGRHKIIILDEADSMTPGAQQALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFA ACN S KIIEP+QSRCA+LRYNKL D ++L++++EI + E + + ++GL
Sbjct: 134 EIYSNSTRFAFACNQSSKIIEPLQSRCAILRYNKLADEEVLARLLEIAKMEEVKYNSEGL 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKD 239
+A++FTA+GDMRQA+NNLQST GFG V VFK+ D+PHPL ++ +LL+CV + ++
Sbjct: 194 QALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQNILLSCVKDKDLDK 253
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ +++ L+ GY+ DI+ + F+VAKT+ DI E +L +I+EIG VH+RI EGV++ LQ
Sbjct: 254 AMELLDSLWSKGYSAIDIVTSTFKVAKTIPDINEQTRLDVIKEIGFVHMRILEGVSTYLQ 313
Query: 299 LSGLLARLC 307
L G+ A++C
Sbjct: 314 LCGMYAKIC 322
>gi|325186968|emb|CCA21512.1| replication factor C subunit 2 putative [Albugo laibachii Nc14]
Length = 327
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/307 (58%), Positives = 242/307 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V N++T+ LK + GN+ NII+SGPPG GKTT+ILCLAR LLGP+
Sbjct: 10 VEKYRPTSLDDVVANQETITCLKAMARDGNMTNIILSGPPGTGKTTSILCLARALLGPAL 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K A+LELNAS+DRGIDTVR KIK+FAQQKV LPPGRHK++ILDEADS+T AQQALRRTM
Sbjct: 70 KHAILELNASDDRGIDTVRTKIKLFAQQKVNLPPGRHKLIILDEADSITGSAQQALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACNNS KIIEPIQSRCA+LR+ +L + +L +++ IC +E +++ +DGL
Sbjct: 130 EIYSSTTRFALACNNSTKIIEPIQSRCAILRFTRLKNELILERLLIICREERLTYQDDGL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FTA+GDMR A+NNLQ+TH GFG +T VFK CD+PHP +K+ML C+E N+ +
Sbjct: 190 AAIIFTAEGDMRNAINNLQATHAGFGAITDANVFKACDQPHPGIIKKMLEECIESNLTAA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ L + GY+ D+I IFRV K+L++ E L+L I++IG H+ I++G++S+LQ+
Sbjct: 250 ETHLFGLVRAGYSTFDLIETIFRVCKSLEMDENLQLEFIKQIGVTHMCIADGLSSVLQIH 309
Query: 301 GLLARLC 307
L+AR+C
Sbjct: 310 ALIARMC 316
>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 336
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/307 (59%), Positives = 241/307 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGNEDT+ RL+ + GN+PN+I+ GPPG GKTT++ LAR LLG ++
Sbjct: 21 VEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSAY 80
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+ RGID VRNKIK FA KV LP GRHKI+ILDEADSMT AQQALRRTM
Sbjct: 81 SNGVLELNASDSRGIDVVRNKIKGFAMNKVNLPVGRHKIIILDEADSMTSAAQQALRRTM 140
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSR A+LRY++LTD Q+L+++ +C +E +S+ + GL
Sbjct: 141 EIYSNTTRFALACNVSTKIIEPIQSRAAILRYSRLTDEQILNRLKFVCGEEEVSYDDGGL 200
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMR ALNN+Q+T +GF HV+ VFKVCD+PHP V+ +L +C++G+ +
Sbjct: 201 EAIIFTAEGDMRNALNNIQATVSGFEHVSQTNVFKVCDQPHPKTVRGILDSCIKGDTTKA 260
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ +L+ GY+ DIIG +F+VAK+ ++PE LKL ++EIG H+RI++GV +LLQL
Sbjct: 261 VVEVRNLWNTGYSCSDIIGTLFKVAKSYEMPEALKLEYLREIGFTHMRIADGVGTLLQLL 320
Query: 301 GLLARLC 307
GL ARLC
Sbjct: 321 GLAARLC 327
>gi|344240765|gb|EGV96868.1| Replication factor C subunit 2 [Cricetulus griseus]
Length = 293
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/275 (68%), Positives = 224/275 (81%), Gaps = 22/275 (8%)
Query: 55 LLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEAD-------- 106
LLGP+ KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEAD
Sbjct: 10 LLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADRTEGMVGP 69
Query: 107 --------------SMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRY 152
SMTDGAQQALRRTMEIYS TTRFALACN S+KIIEPIQSRCA+LRY
Sbjct: 70 FPKTQYQPPSYACLSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRY 129
Query: 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEY 212
KLTDAQ+L++++ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +GFG++ +E
Sbjct: 130 TKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSEN 189
Query: 213 VFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPE 272
VFKVCDEPHPL VKEM+ +CV+ N+ ++YKI+ HL+ LGY+PEDII NIFRV KT + E
Sbjct: 190 VFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDIISNIFRVCKTFPMAE 249
Query: 273 PLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
LKL I+EIG H++++EGVNSLLQ++GLLARLC
Sbjct: 250 YLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLC 284
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/310 (61%), Positives = 240/310 (77%), Gaps = 4/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T+ RL+ + GN+P++IISG PG+GKTT++ CLA LLG ++
Sbjct: 13 VEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVSCLAHELLGNAY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VRN+IK FAQ+K +LPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 73 SQAVLELNASDDRGIDVVRNQIKQFAQKKCSLPPGRHKIVILDEADSMTAGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY+KL D Q+L +++E+ + EN+ +TNDGL
Sbjct: 133 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDDQVLRRLLEVIQAENVQYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQALNNLQST G+G V E VFK+ D PHPL VK MLL ++ +S
Sbjct: 193 EAIIFTAEGDMRQALNNLQSTVAGYGLVNGENVFKIVDSPHPLIVKRMLL---APSLDES 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DI+ FRV K LD I E ++L +I+EIG H+RI EGV + LQL
Sbjct: 250 LALFKELWNKGYSAVDIVTTCFRVTKNLDEIKEAVRLEMIREIGFAHMRILEGVGTYLQL 309
Query: 300 SGLLARLCIV 309
+G+LA++ V
Sbjct: 310 AGMLAKISKV 319
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/308 (60%), Positives = 246/308 (79%), Gaps = 2/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGNEDT+ERLK F+ GNVP++IISG PG+GKTT++ CLA LLG +
Sbjct: 12 VEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVHCLAHELLGDMY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
DAVLELNAS+DRGI+ VRNKIK FA +KV+LPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 72 YDAVLELNASDDRGIEVVRNKIKQFAHKKVSLPPGRHKIVILDEADSMTPGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRF ACN S KIIEP+QSRC++LRY+KL D Q+LS+++ IC++E + +T+DGL
Sbjct: 132 EIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDEQVLSRLLYICKEEGVKYTDDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKD 239
EA++FTA+GDMRQA+NNLQST G G V + VF++ D PHPL V++ML V + ++
Sbjct: 192 EALIFTAEGDMRQAINNLQSTVAGMGLVNGDNVFRIVDSPHPLVVRQMLFKAVKDSDIDA 251
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ +++ L++ GY+ DI+ F+V K++ +IPE +L +++EIG H+R+ EGV+S LQ
Sbjct: 252 AVDLLNRLWEKGYSAVDIVSTSFKVMKSVTEIPEADRLEVMREIGFTHMRVLEGVSSYLQ 311
Query: 299 LSGLLARL 306
L+G+LAR+
Sbjct: 312 LAGMLARI 319
>gi|119467812|ref|XP_001257712.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
fischeri NRRL 181]
gi|119405864|gb|EAW15815.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
fischeri NRRL 181]
Length = 348
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/307 (60%), Positives = 244/307 (79%), Gaps = 5/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPIFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGEAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RG+ ++IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGM----SRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 146
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEPIQSRCA+LRY +LTDAQ++ ++ +IC+ E + HT DG+
Sbjct: 147 EIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKRLKQICDAEKVEHTEDGI 206
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 207 AALVFSAEGDMRQAINNLQSTWSGFGLVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAA 266
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L+ LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 267 LETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 326
Query: 300 SGLLARL 306
SG +++L
Sbjct: 327 SGCVSKL 333
>gi|452846354|gb|EME48287.1| hypothetical protein DOTSEDRAFT_147627 [Dothistroma septosporum
NZE10]
Length = 352
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 180/308 (58%), Positives = 242/308 (78%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG ++
Sbjct: 31 VEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGAAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GR KIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQKIVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTD Q++ ++ +I + E + +++DG+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLYQIAKAEGVEYSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQSTH GFG V + VF+V D PHP+ V+ M+ +C + + ++
Sbjct: 211 AALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQGMIRSCQDSKVDEA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ LGY+ DII +F+V K++ + E KL I+EIG H+RI EG+ + LQL
Sbjct: 271 LDSLKELWDLGYSSHDIISTMFKVTKSIPSLSEHTKLEFIREIGFTHMRILEGMQTYLQL 330
Query: 300 SGLLARLC 307
+G +A+LC
Sbjct: 331 AGCVAKLC 338
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 240/307 (78%), Gaps = 4/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN++TVERL+ + GN+P++IISG PG+GKTT+I CLA LLG ++
Sbjct: 13 VEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHELLGDAY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VRN+IK FAQ+K TLPPG+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 73 SQAVLELNASDDRGIDVVRNQIKQFAQKKCTLPPGKHKIIILDEADSMTSGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFA ACN S KIIEP+QSRCA+LRY+KL+D Q+L ++ EI + EN+ +TNDGL
Sbjct: 133 ELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLFEIIKAENVQYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA+GDMRQA+NNLQST GF V + VFK+ D PHPL +K+MLL+ + +S
Sbjct: 193 EALIFTAEGDMRQAINNLQSTVAGFTLVNGDNVFKIVDSPHPLVIKKMLLS---ATLDES 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DII FRV K L +I EPL+L +I+EIG H+RI EGV + LQL
Sbjct: 250 LNYLRELWGKGYSAVDIITTCFRVMKNLTEIKEPLRLEMIKEIGFTHMRILEGVGTYLQL 309
Query: 300 SGLLARL 306
G LAR+
Sbjct: 310 CGALARI 316
>gi|328866222|gb|EGG14607.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 325
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/310 (61%), Positives = 240/310 (77%), Gaps = 1/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TV RL+ + GN+PNIIISGPPG GKTT+ILCLA+ LLGP++
Sbjct: 9 VEKYRPSQIKDIVGNEETVSRLQSIAIDGNLPNIIISGPPGTGKTTSILCLAQALLGPAY 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AV ELNAS++R ++ VR+KIK FA +KVTLPPGRHKI+ILDEADSMT GAQQALRR M
Sbjct: 69 KEAVYELNASDERKLEVVRDKIKKFAAKKVTLPPGRHKIIILDEADSMTAGAQQALRRIM 128
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI S TTRFALACN S KIIEPIQSRCA+LRY +L+D Q+L ++ E+ EN+ + +GL
Sbjct: 129 EINSATTRFALACNQSTKIIEPIQSRCAVLRYTRLSDEQILKRLKEVMTIENVPYHENGL 188
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++ TA GDMRQALNNLQ+TH+GFG V + VFKVC++PHP V ML C E K++
Sbjct: 189 EALLHTADGDMRQALNNLQATHSGFGLVNNDNVFKVCEQPHPAIVTMMLSACAECKYKEA 248
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y + L+ GYA DI+ +FRV KT+ IPE +L I+EIG ++R S G+N+L+QL
Sbjct: 249 YAQMDVLWSKGYASTDILTTMFRVCKTIYAIPEYQRLEFIKEIGISNMRASAGMNTLVQL 308
Query: 300 SGLLARLCIV 309
+GLLARLC V
Sbjct: 309 TGLLARLCDV 318
>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 247/315 (78%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TVERLK+ + GN+P++IISG PG+GKTT+I CLA LLG +
Sbjct: 13 VEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGKTM 72
Query: 61 KD-AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
D A LELNAS+DRGID VRNKIK FAQ K++LPPGRHKI+ILDEADSMT GAQQALRRT
Sbjct: 73 YDQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRHKIIILDEADSMTPGAQQALRRT 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYNKL D Q+LS+++EI + E++ + + G
Sbjct: 133 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKAEDVKYNSQG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV----EG 235
L+A++FTA+GDMRQA+NN+QST GFG V VFK+ D+PHPL +K++L +C +G
Sbjct: 193 LQALIFTAEGDMRQAINNMQSTVAGFGFVDDVNVFKIVDQPHPLVIKKILNSCCSNDGKG 252
Query: 236 NMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVN 294
++ + +++ L+ GY+ DI+ + FRVAKTL I E +L II+E+G VH+R+ EGV+
Sbjct: 253 DIDTALRLLDDLWNKGYSAIDIVTSTFRVAKTLPGISESKRLDIIKEVGLVHMRVLEGVS 312
Query: 295 SLLQLSGLLARLCIV 309
+ LQL GL A++C +
Sbjct: 313 TYLQLCGLFAKICTI 327
>gi|344231186|gb|EGV63068.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 325
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/310 (60%), Positives = 246/310 (79%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP +IVGNE+TVERLK+ ++ GN+P++IISG PG+GKTT+I CLA LLGP
Sbjct: 14 VEKYRPHKLDNIVGNEETVERLKLIANDGNMPHMIISGLPGIGKTTSIHCLALELLGPEL 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+K A LELNAS+DRGID VRN+IK FAQ K+ LPPGRHKI+ILDEADSMT GAQQALRRT
Sbjct: 74 YKSATLELNASDDRGIDVVRNRIKQFAQTKIQLPPGRHKIIILDEADSMTPGAQQALRRT 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYNKL D Q+L++++E+C+ EN+ +G
Sbjct: 134 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEVCKLENVQFNTEG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG-NMK 238
L+A++FTA+GDMRQA+NNLQST GFG V VFK+ D+PHPL +++ML +C ++
Sbjct: 194 LQALIFTAEGDMRQAINNLQSTVAGFGMVNDVNVFKIVDQPHPLVIRKMLRSCCSSQDID 253
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ ++ L+ GY+ DI+ + F+VAKTL DI E +L +I+EIG H+R+ EGV++ L
Sbjct: 254 NAIDLLDGLWVKGYSAIDIVTSAFKVAKTLPDINESKRLEVIKEIGFTHMRVLEGVSTYL 313
Query: 298 QLSGLLARLC 307
QL G+LA++C
Sbjct: 314 QLCGMLAKIC 323
>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
Length = 327
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/312 (60%), Positives = 247/312 (79%), Gaps = 5/312 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP DIVGNE+TVERLK+ GN+P++IISG PG+GKTT+I CLA LLGP
Sbjct: 14 VEKYRPHKLDDIVGNEETVERLKLLVEDGNMPHMIISGLPGIGKTTSIHCLAYELLGPEL 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ A LELNAS+DRGID VRNKIK FAQ K++LP GRHKI+ILDEADSMT GAQQALRRT
Sbjct: 74 YQQATLELNASDDRGIDVVRNKIKQFAQTKISLPAGRHKIIILDEADSMTPGAQQALRRT 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRY KL+D Q+L +++E+ + E++ + ++G
Sbjct: 134 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYTKLSDEQVLERLLEVTKLEDVKYNSEG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE---GN 236
L+A++FTA+GDMRQA+NNLQST GFG V VFK+ D+PHPL +K++L +C GN
Sbjct: 194 LQALIFTAEGDMRQAINNLQSTVAGFGFVNDINVFKIVDQPHPLVIKKILASCCSNKGGN 253
Query: 237 MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ ++ +++ +L++ GY+ DI+ + FRVAKTL I E +L +I+EIG VH+R+ EGV+S
Sbjct: 254 IDEALELLDNLWEKGYSAIDIVTSSFRVAKTLPGISESKRLDMIKEIGFVHMRVLEGVSS 313
Query: 296 LLQLSGLLARLC 307
LQL GL A+LC
Sbjct: 314 YLQLCGLFAKLC 325
>gi|312077613|ref|XP_003141381.1| hypothetical protein LOAG_05796 [Loa loa]
gi|307763457|gb|EFO22691.1| hypothetical protein LOAG_05796 [Loa loa]
Length = 305
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/304 (62%), Positives = 247/304 (81%)
Query: 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68
S++VGNE V+RL F+ GN PNIIISGPPG GKTT++ LAR +LG K A LELN
Sbjct: 2 LSEVVGNEFVVQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGDRLKSACLELN 61
Query: 69 ASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTR 128
AS+DRGID VRNKIK FAQ KVTLPPGRHK+VILDE DSMT+GAQQALRRTME+YS TTR
Sbjct: 62 ASDDRGIDVVRNKIKNFAQSKVTLPPGRHKVVILDEVDSMTEGAQQALRRTMEVYSKTTR 121
Query: 129 FALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQ 188
FALACN S K+IEPIQSRCA+LR++KL++ Q++ +++++CE E +++ + G++A+VFTAQ
Sbjct: 122 FALACNQSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQVCEAERVTYDDSGIDALVFTAQ 181
Query: 189 GDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY 248
GDMRQALNNLQ T GF +VTA+ VFKVCDEPHP V +M+ +C+ GN+ + +I+H LY
Sbjct: 182 GDMRQALNNLQCTVVGFNNVTADNVFKVCDEPHPQKVMQMIEHCIHGNVIKAGEILHSLY 241
Query: 249 KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
++GY+ EDI+ N+ RV KT++IPE LKL ++EIG H+R+ EG++SLLQLS LLAR+C+
Sbjct: 242 RMGYSSEDILNNMVRVCKTVNIPEYLKLEYVKEIGLCHVRVVEGLSSLLQLSALLARMCL 301
Query: 309 VGSK 312
S+
Sbjct: 302 KQSQ 305
>gi|350636056|gb|EHA24416.1| hypothetical protein ASPNIDRAFT_40316 [Aspergillus niger ATCC 1015]
Length = 342
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/313 (59%), Positives = 242/313 (77%), Gaps = 11/313 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +TVERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RG FAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERG----------FAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTM 140
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEPIQSRCA+LRY +LTDAQ++ ++ ++C+ E + H +G+
Sbjct: 141 EIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQVCDAEKVEHNEEGI 200
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 201 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAA 260
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ ++ L++LGY+ DII +FRV KT+ + E KL I+EIG H+RI +GV SLLQL
Sbjct: 261 LETLNELWELGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMRILDGVQSLLQL 320
Query: 300 SGLLARLCIVGSK 312
SG +A+LC + K
Sbjct: 321 SGCVAKLCRINMK 333
>gi|354545639|emb|CCE42366.1| hypothetical protein CPAR2_200090 [Candida parapsilosis]
Length = 320
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/309 (58%), Positives = 244/309 (78%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP DIVGNE+T+ERLK+ GN+PN+IISG PG+GKTT++ CLA LLG
Sbjct: 10 VEKYRPHVLDDIVGNEETIERLKIIVQDGNMPNMIISGLPGIGKTTSVHCLAYELLGKEH 69
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ A LELNAS+DRGID VRNKIK FAQ K++LPPGR KI+ILDEADSMT GAQQALRRT
Sbjct: 70 YHQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRTKIIILDEADSMTPGAQQALRRT 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYNKL+D ++L ++++I + EN+ + N+G
Sbjct: 130 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKSENVQYNNEG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L+A++F+A+GDMRQA+NNLQST GFG V VFK+ D+PHPL ++ +L NC++G++
Sbjct: 190 LQALIFSAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQNILSNCLQGDVDK 249
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ ++ L+ GY+ DI+ + F+VAKT+ ++ E +L++I+EIG VH+R+ EGV S LQ
Sbjct: 250 ALGLLDGLWHKGYSAIDIVTSTFKVAKTIPNVDESKRLNMIKEIGFVHMRVLEGVGSYLQ 309
Query: 299 LSGLLARLC 307
L G+ A++C
Sbjct: 310 LCGMYAKIC 318
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/307 (61%), Positives = 240/307 (78%), Gaps = 4/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVGNE+ VERL+ + GN+P++IISG PG+GKTT+I C+A LLG S+
Sbjct: 12 VEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHELLGDSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VRN+IK FAQ+K TLPPG+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 72 SQAVLELNASDDRGIDVVRNQIKQFAQKKCTLPPGKHKIIILDEADSMTSGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS++TRFA ACN S KIIEP+QSRCA+LRY+KL+D Q+L +++EI + E++ +TNDGL
Sbjct: 132 EIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST GFG V + VFK+ D PHPL VK+MLL ++ +S
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGFGLVNGDNVFKIVDSPHPLVVKKMLL---ANSLDES 248
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DII FRV K L +I E ++L II+EIG H+RI EGV + LQL
Sbjct: 249 LTYLKDLWNKGYSAVDIITTCFRVMKNLAEIKEHIRLEIIKEIGFTHMRILEGVGTYLQL 308
Query: 300 SGLLARL 306
S LA++
Sbjct: 309 SATLAKV 315
>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 334
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/318 (58%), Positives = 242/318 (76%), Gaps = 3/318 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+VGN+D V+R++ SG +PN+I SGPPG GKT+ I LAR LLG +
Sbjct: 4 VEKYRPKTLDDLVGNDDAVDRMRTMVRSGFMPNLIFSGPPGCGKTSAIGVLARELLGDKY 63
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLE+NAS++RGID VRNKIKMFAQ+KVTL PGR K+VILDEADSMT AQQA+RRTM
Sbjct: 64 KEAVLEMNASDERGIDVVRNKIKMFAQKKVTLAPGRTKLVILDEADSMTTAAQQAMRRTM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN SEK+IEPIQSRCA++R+ KLTDAQ+L +++ + E E +++ GL
Sbjct: 124 EIYSATTRFALACNTSEKVIEPIQSRCAIVRFGKLTDAQVLKRLMTVVEAEKVTYVPKGL 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTA GDMRQALNNLQST GFG V E VF+VCD+PHP V++ ++GN+ D+
Sbjct: 184 EAIVFTADGDMRQALNNLQSTALGFGMVNEENVFRVCDQPHPNIVRDAFSFILQGNVDDA 243
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD---IPEPLKLSIIQEIGNVHLRISEGVNSLL 297
Y + L+ GY+ DIIG ++RV K D +PE +KL +I+ IG HLR+SEG +++
Sbjct: 244 YARLKSLHDQGYSVFDIIGTMYRVCKNFDDTAMPEFIKLELIRIIGFTHLRLSEGCATMI 303
Query: 298 QLSGLLARLCIVGSKNKK 315
Q+ G +AR+ + S KK
Sbjct: 304 QIGGGVARMVELVSDAKK 321
>gi|308810180|ref|XP_003082399.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
gi|116060867|emb|CAL57345.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
Length = 354
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/310 (59%), Positives = 240/310 (77%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T DIVGN+D V+R++ +SG +PN++ GPPG GKT+ I L+R LLG +
Sbjct: 24 LEKYRPKTLDDIVGNDDAVDRMRSMVASGFMPNLMFCGPPGCGKTSAIGVLSRALLGDKY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLE+NAS++RGID VRNKIKMFAQ+KVTLPPGR KIVILDEAD+MT AQQALRRTM
Sbjct: 84 KDAVLEMNASDERGIDVVRNKIKMFAQKKVTLPPGRTKIVILDEADAMTTAAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRF LACN S+K+IEPIQSRCA++R+ KLTD Q+L +++ + E+E +++ GL
Sbjct: 144 EIFSATTRFCLACNTSDKVIEPIQSRCAIVRFVKLTDEQVLKRLMTVIEREKVAYVPKGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTA GDMRQALNNLQST GFG + E VF+VCD+PHP V++ L ++ N+ D+
Sbjct: 204 EAIVFTADGDMRQALNNLQSTAQGFGLIDEENVFRVCDQPHPNIVRDALSFILQENIDDA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD---IPEPLKLSIIQEIGNVHLRISEGVNSLL 297
Y I LY GY+ DIIG ++RV K D +PE +KL +I+ IG HLR+SEG ++L
Sbjct: 264 YARIKSLYDKGYSVFDIIGTMYRVCKNYDDNAMPEYIKLELIRIIGFTHLRLSEGCATML 323
Query: 298 QLSGLLARLC 307
QL+G +A++C
Sbjct: 324 QLAGGMAKMC 333
>gi|402592394|gb|EJW86323.1| replication factor C subunit 2 [Wuchereria bancrofti]
Length = 307
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 245/306 (80%), Gaps = 2/306 (0%)
Query: 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68
S++VGNE V+RL F+ GN PNIIISGPPG GKTT++ LAR +LG K A LELN
Sbjct: 2 LSEVVGNEFVVQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGGRLKSACLELN 61
Query: 69 ASNDR--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNT 126
AS+DR GID VRNKIK FAQ KVTLPPGRHKI+ILDE DSMT+GAQQALRRTME+YS T
Sbjct: 62 ASDDREMGIDVVRNKIKNFAQSKVTLPPGRHKIIILDEVDSMTEGAQQALRRTMEVYSKT 121
Query: 127 TRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT 186
TRF LACN S K+IEPIQSRCA+LR++KL++ Q++ ++++ICE E +++ + G++A+VFT
Sbjct: 122 TRFTLACNQSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQICEAEKVTYDDSGIDALVFT 181
Query: 187 AQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHH 246
AQGDMRQALNNLQ T GF +VTA+ VFKVCDEPHP V +++ +CV G + ++ +I+H
Sbjct: 182 AQGDMRQALNNLQCTVVGFNNVTADNVFKVCDEPHPQMVMQIIEHCVHGKVMEAGEIVHS 241
Query: 247 LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARL 306
LY++GY+ EDI+ N+ RV KTL IPE LKL ++EIG H+RI EG++SLLQLS L+AR+
Sbjct: 242 LYRMGYSAEDILNNMVRVCKTLSIPEYLKLEYVKEIGLCHIRIVEGLSSLLQLSALVARM 301
Query: 307 CIVGSK 312
C+ S+
Sbjct: 302 CLKQSQ 307
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/308 (60%), Positives = 245/308 (79%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV + LQ
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 308
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 309 LASMLAKI 316
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/308 (60%), Positives = 245/308 (79%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV + LQ
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 308
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 309 LASMLAKI 316
>gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 245/315 (77%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TVERLK+ + GN+P++IISG PG+GKTT+I CLA LLG +
Sbjct: 13 VEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGKTM 72
Query: 61 KD-AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
D A LELNAS+DRGID VRNKIK FAQ K+ LPPGRHKI+ILDEADSMT GAQQALRRT
Sbjct: 73 YDQATLELNASDDRGIDVVRNKIKQFAQTKILLPPGRHKIIILDEADSMTPGAQQALRRT 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYNKL D Q+LS+++EI + E++ + + G
Sbjct: 133 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKAEDVKYNSQG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV----EG 235
L+A++FTA+GDMRQA+NN+QST GFG V VFK+ D+PHPL +K++L +C +G
Sbjct: 193 LQALIFTAEGDMRQAINNMQSTVAGFGFVDDVNVFKIVDQPHPLVIKKILNSCCSNDGKG 252
Query: 236 NMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVN 294
++ + +++ L+ GY+ DI+ FRVAKTL I E +L II+E+G VH+R+ EGV+
Sbjct: 253 DIDTALRLLDDLWNKGYSAIDIVTLTFRVAKTLPGISELKRLDIIKEVGLVHMRVLEGVS 312
Query: 295 SLLQLSGLLARLCIV 309
+ LQL GL A++C +
Sbjct: 313 TYLQLCGLFAKICTI 327
>gi|448524726|ref|XP_003869003.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380353356|emb|CCG22866.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 320
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/309 (59%), Positives = 244/309 (78%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP DIVGNE+T+ERLKV GN+PN+IISG PG+GKTT+I CLA LLG
Sbjct: 10 VEKYRPHVLDDIVGNEETIERLKVIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGKEH 69
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ A LELNAS+DRGID VRNKIK FAQ K++LPPGR KI+ILDEADSMT GAQQALRRT
Sbjct: 70 YHQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRTKIIILDEADSMTPGAQQALRRT 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYNKL+D ++L ++++I + EN+ + N+G
Sbjct: 130 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKLENVQYNNEG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L+A++F+A+GDMRQA+NN+QST GFG V VFK+ D+PHPL ++ +L NC++G++
Sbjct: 190 LQALIFSAEGDMRQAINNMQSTVAGFGFVNDVNVFKIVDQPHPLVIQNILSNCLQGDVDK 249
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ ++ L+ GY+ DI+ + F+VAKT+ ++ E +L++I+EIG VH+R+ EGV S LQ
Sbjct: 250 AIGLLDGLWHKGYSAIDIVTSTFKVAKTIPNVDESKRLNMIKEIGFVHMRVLEGVGSYLQ 309
Query: 299 LSGLLARLC 307
L G+ A++C
Sbjct: 310 LCGMYAKIC 318
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/308 (60%), Positives = 245/308 (79%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +++EIG H+RI EGV + LQ
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMMKEIGLTHMRILEGVGTYLQ 308
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 309 LASMLAKI 316
>gi|342875984|gb|EGU77649.1| hypothetical protein FOXB_11824 [Fusarium oxysporum Fo5176]
Length = 697
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/297 (60%), Positives = 236/297 (79%), Gaps = 1/297 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGESY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KLTDAQ++ ++++I E E + +++DGL
Sbjct: 156 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEAEKVEYSDDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V+ + VFKV D PHP+ V+ ML C EGN+ +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSA 275
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + L+ LGY+ DII +F+V KT+ + E KL I+EIG H+++ E ++ +
Sbjct: 276 LETLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKVLEALSPI 332
>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/308 (60%), Positives = 245/308 (79%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QS+CA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV + LQ
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 308
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 309 LASMLAKI 316
>gi|281204159|gb|EFA78355.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 319
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/315 (62%), Positives = 244/315 (77%), Gaps = 15/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGNE+TV RL+ S GN+PNIIISGPPG GKTT+ILCLA+ LLGP++
Sbjct: 20 VEKYRPKEIKDIVGNEETVSRLESISMDGNLPNIIISGPPGTGKTTSILCLAQQLLGPNY 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AV ELNAS+DR +D VR+KIK FAQ KVTLPPGRHKI+ILDEADSMT GAQQALRR M
Sbjct: 80 KEAVYELNASDDRTLDVVRDKIKTFAQTKVTLPPGRHKIIILDEADSMTSGAQQALRRIM 139
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN S KIIEPIQSRCA+LRY +LTDAQ+L ++ E+ E E + +T+DGL
Sbjct: 140 EIYSSTTRFALACNQSSKIIEPIQSRCAVLRYTRLTDAQVLKRLREVIEAEKVPYTDDGL 199
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA+GDMRQALNNLQST GF V+ + VF+ +C +G +D+
Sbjct: 200 EALIFTAEGDMRQALNNLQSTFTGFEMVSGDNVFR---------------HCADGRFEDA 244
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+K L+ GY+ DII F+VAKTLD+PE KL I+EIG +LRI++GVNSLLQLS
Sbjct: 245 FKNTKDLWDKGYSSMDIISTFFKVAKTLDMPEYQKLEFIKEIGFTNLRITQGVNSLLQLS 304
Query: 301 GLLARLCIVGSKNKK 315
LL+RLC++ + KK
Sbjct: 305 ALLSRLCLITYQMKK 319
>gi|342320961|gb|EGU12899.1| Replication factor C subunit 4 [Rhodotorula glutinis ATCC 204091]
Length = 438
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/321 (58%), Positives = 247/321 (76%), Gaps = 11/321 (3%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIIS---------GPPGVGKTTTILCLAR 53
++RP+T DIVGN +T+ERLKV + GN P+IIIS G PG+GKTT+IL LAR
Sbjct: 104 QHRPKTLDDIVGNTETIERLKVIARDGNCPHIIISLVERWVRTQGAPGIGKTTSILALAR 163
Query: 54 ILLG-PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA 112
LLG ++K+ VLELNAS++RGID VRN+IK FAQ+KVTLP GRHK++ILDEADSMT GA
Sbjct: 164 ALLGDKNYKEGVLELNASDERGIDVVRNRIKTFAQKKVTLPLGRHKLIILDEADSMTTGA 223
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
QQALRRTME+YSNTTRFALACN S KIIEPIQSRCA+LRY +L+D +LL ++ EICE E
Sbjct: 224 QQALRRTMELYSNTTRFALACNQSNKIIEPIQSRCAILRYARLSDKELLKRLKEICEIEK 283
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNC 232
+ H GL A++FT++GDMRQA+NNLQST +GFG V A+ VFKVCD+PHP+ V++++ C
Sbjct: 284 VPHNEQGLTALIFTSEGDMRQAINNLQSTFSGFGFVGADEVFKVCDQPHPVRVQQLVSAC 343
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISE 291
V+G++ + + L+ GYA D++ +FRV K ++ + E ++L I+EIG H+RI E
Sbjct: 344 VKGDVDKAMDGLGELWGQGYAAVDVVSTLFRVVKGMEQLSEYVRLEFIREIGFTHMRILE 403
Query: 292 GVNSLLQLSGLLARLCIVGSK 312
GV +++QL GL+ARLC + K
Sbjct: 404 GVATVVQLGGLIARLCRLSMK 424
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/314 (59%), Positives = 246/314 (78%), Gaps = 5/314 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGSSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPQGKHKIIILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L +++EI + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N+ DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLAT---NLDDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV + LQ
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 308
Query: 299 LSGLLARLCIVGSK 312
L+ +LA++ + +K
Sbjct: 309 LASMLAKIHKLNTK 322
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 242/308 (78%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGNE+TVERL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 14 VEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCLAHELLGKSY 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VRN+IK FAQ+K LPPG+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 74 SQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPPGKHKIIILDEADSMTAGAQQALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFA ACN S KIIEP+QSRCA+LRY+KL+D Q+L +++EI + EN+S TNDGL
Sbjct: 134 ELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLMEIIKAENVSFTNDGL 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL-NCVEGNMKD 239
EAI+FTA+GDMRQA+NNLQST G G V+ + VFK+ D PHPL VK+MLL + +E ++
Sbjct: 194 EAIIFTAEGDMRQAINNLQSTVAGHGLVSGDNVFKIVDSPHPLIVKKMLLADTLEESIS- 252
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L+ GY+ DI+ FRV K+L + E +L +I+EIG H+RI EGV + LQ
Sbjct: 253 --HLKNDLWDKGYSAVDIVTTSFRVTKSLYQVKEAQRLEMIKEIGITHMRILEGVGTYLQ 310
Query: 299 LSGLLARL 306
L+ LLAR+
Sbjct: 311 LASLLARI 318
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/307 (57%), Positives = 238/307 (77%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEK+RPQ DIVGNE+T++R+KV + +GN+P+I+++GPPG GKTT++LCLA +LG ++
Sbjct: 6 IEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAMLGDAY 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AV+ELNAS+DRGID VR KIK+FAQ KV+LP G HK+V+LDEADSMT AQQALRR M
Sbjct: 66 KTAVIELNASDDRGIDVVREKIKLFAQSKVSLPEGSHKLVLLDEADSMTPAAQQALRRIM 125
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFAL CN S KIIEPIQSRCA+LR+N+L D ++L +++ ICE+E I++TNDGL
Sbjct: 126 ELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICEEEKITYTNDGL 185
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++F A GD+R A+N+LQ+T GF V E V KVCD+P P+ K+++ CV +M +
Sbjct: 186 SALLFCADGDLRVAVNSLQATFYGFNVVNEENVIKVCDQPPPVVAKQIVQCCVSKDMVGA 245
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ L+ LGY+ DI+G IF+V K D+ E LKL ++EIG LRI+EG +LLQL
Sbjct: 246 RSGMTQLWNLGYSSSDIVGTIFKVTKDADLTEKLKLEFLKEIGICQLRIAEGATTLLQLL 305
Query: 301 GLLARLC 307
GL+A++C
Sbjct: 306 GLVAKMC 312
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/308 (60%), Positives = 244/308 (79%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 71 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 130
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGI VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 131 ADGVLELNASDDRGIXVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 190
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 191 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 250
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 251 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 307
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +++EIG H+RI EGV + LQ
Sbjct: 308 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMMKEIGLTHMRILEGVGTYLQ 367
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 368 LASMLAKI 375
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/309 (59%), Positives = 240/309 (77%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+ GNE+T+ RLK+ S GN+P++IISG PG+GKTT+I CLA LLG ++
Sbjct: 12 VEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIHCLAHELLGDAY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+AVLELNAS+DRGID VRNKIK FAQ+KV+LP GRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 72 SNAVLELNASDDRGIDVVRNKIKQFAQKKVSLPQGRHKIIILDEADSMTPGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KL+D ++L ++++I + E + ++NDGL
Sbjct: 132 EIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDEEVLKRLLDIIKFEKVEYSNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG-NMKD 239
EA++FTA+GDMRQA+NNLQST GFG V E VFK+ D PHPL +K+M+L V+ ++
Sbjct: 192 EALIFTAEGDMRQAINNLQSTVAGFGFVNGENVFKIVDSPHPLIIKKMILEVVQNKDIDK 251
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
S ++ L++ GY+ DI F+V K L +I E +L I++EIG H+R+ EGV S LQ
Sbjct: 252 SLFYLNGLWEKGYSAIDIASTSFKVVKNLYEIDESDRLEIMKEIGITHMRVLEGVGSYLQ 311
Query: 299 LSGLLARLC 307
L+ L+AR+
Sbjct: 312 LNALIARIA 320
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/308 (61%), Positives = 237/308 (76%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNEDT+ERLK + GN+P++IISG PG+GKTT+I CLA LLG S+
Sbjct: 13 VEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLGDSY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VRN+IK FAQ+K LP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 73 SQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPTGKHKIIILDEADSMTAGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA ACN S KIIEP+QSRCA+LRY KL+D Q+L +++EI + E++ +TNDGL
Sbjct: 133 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLEITKAEDVKYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA+GDMRQA+NNLQST G V + VFK+ D PHPL VK+M+L + DS
Sbjct: 193 EALIFTAEGDMRQAINNLQSTVAGHSLVNGDNVFKIVDSPHPLIVKKMIL---APTLDDS 249
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
I+ L+ GY+ DI+ FRV KTL ++ EP +L +I+EIG H+RI EGV + LQ
Sbjct: 250 LLILRKELWDKGYSAVDIVTTSFRVTKTLYELKEPQRLDMIKEIGITHMRILEGVGTYLQ 309
Query: 299 LSGLLARL 306
L+ ++A+L
Sbjct: 310 LAAMMAKL 317
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/307 (60%), Positives = 237/307 (77%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TVERL+ ++ GN+P++IISG PG+GKTT+I CLA +LG S+
Sbjct: 13 VEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLGESY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VRN+IK FAQ+K LPPG+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 73 SQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPPGKHKIIILDEADSMTAGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D Q+L +++EI + E++ +TNDGL
Sbjct: 133 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKAEDVQYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V E VFK+ D PHPL VK+MLL D
Sbjct: 193 EAIIFTAEGDMRQAINNLQSTVAGHGLVNGENVFKIVDSPHPLIVKKMLLAETLDESIDC 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L+ GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV++ LQL
Sbjct: 253 LR--QELWAKGYSAVDIVTTCFRVTKNLFQLKESVRLEMIKEIGTTHMRILEGVSTYLQL 310
Query: 300 SGLLARL 306
+ +LA++
Sbjct: 311 ASMLAKI 317
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/314 (58%), Positives = 245/314 (78%), Gaps = 5/314 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ SDIVGN++T++RL+ + GN+P++IISG P +GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVHCLAHELLGNSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LP GRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPQGRHKIIILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L +++EI + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G V A+ VF++ D PHPL VK+MLL N+ DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHDLVNADNVFRIVDSPHPLIVKKMLLAT---NLDDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV + LQ
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 308
Query: 299 LSGLLARLCIVGSK 312
L+G+LA++ + +K
Sbjct: 309 LAGMLAKIHRLNTK 322
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/308 (59%), Positives = 239/308 (77%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVGNE+T+ERLK + GN+P++IISG PG+GKTT++ CLA LLG +
Sbjct: 13 VEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCLAHELLGSHY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID +RN+IK FAQ+K+ LP G+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 73 SQAVLELNASDDRGIDVIRNQIKHFAQKKLNLPVGKHKIIILDEADSMTAGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFA ACN S KIIEP+QSRCA+LRY+KL+D Q+L +++E+ E E + +TNDGL
Sbjct: 133 ELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEVIELEKVEYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V + VFK+ D PHPL V++MLL+ + +S
Sbjct: 193 EAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLIVRKMLLST---TLDES 249
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
I+ + L+ GY+ DI+ FRV KTL + E +L +I+EIG H+RI EGV + LQ
Sbjct: 250 MNILRNELWNKGYSSVDIVTTCFRVTKTLPQVKEAKRLEMIKEIGFTHMRILEGVGTYLQ 309
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 310 LASMLAKI 317
>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|149388978|gb|EAZ62975.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/310 (58%), Positives = 243/310 (78%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGNE+T+ERLK+ + GN+P++IISG PG+GKTT+I CLA LLG +
Sbjct: 14 VEKYRPRRLDDVVGNEETIERLKLIAKDGNMPHMIISGLPGIGKTTSIHCLAYELLGDDY 73
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ A LELNAS+DRGID VRN+IK FAQ K+ LPPGRHKI+ILDEADSMT GAQQALRRT
Sbjct: 74 YQQATLELNASDDRGIDVVRNRIKQFAQTKIKLPPGRHKIIILDEADSMTPGAQQALRRT 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYNKL D Q+L++++E+ EN+ ++G
Sbjct: 134 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEVSAAENVKFNSEG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG-NMK 238
L+A++FTA+GDMRQA+NNLQST GFG V VFK+ D+PHPL ++ +L++C + ++
Sbjct: 194 LQALIFTAEGDMRQAINNLQSTVAGFGFVNDINVFKIVDQPHPLVIQRILIHCTKDRDID 253
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ ++ L+ GY+ DI+ + F+V+KTL I E +L +I+E+G VH+R+ EGV+S L
Sbjct: 254 RALALLDDLWAKGYSAIDIVTSTFKVSKTLPGIGEQKRLELIKEVGFVHMRVLEGVSSYL 313
Query: 298 QLSGLLARLC 307
QL GL A++C
Sbjct: 314 QLCGLYAKIC 323
>gi|448123321|ref|XP_004204663.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|448125599|ref|XP_004205221.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358249854|emb|CCE72920.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358350202|emb|CCE73481.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
Length = 327
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/312 (58%), Positives = 243/312 (77%), Gaps = 5/312 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ DIVGNE+TVERLK+ + GN+P++I+SG PG+GKTT+I CLA LLGP
Sbjct: 14 VEKYRPKKLDDIVGNEETVERLKLIALDGNMPHMILSGLPGIGKTTSIHCLAYELLGPEL 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ A +ELNAS+DRGID VRNKIK FAQ K+ LP GRHKI+ILDEADSMT GAQQALRRT
Sbjct: 74 YHQATMELNASDDRGIDVVRNKIKQFAQTKIQLPAGRHKIIILDEADSMTPGAQQALRRT 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYNKL+D Q+L +++EI + E++ + ++G
Sbjct: 134 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEQVLQRLLEITKLEDVKYNSEG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN--- 236
L+A++FTA+GDMRQA+NNLQST GFG V VFK+ D+PHPL ++++L C +
Sbjct: 194 LQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLIIRKILSYCCSKDGQG 253
Query: 237 MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ ++ +++ L+ GY+ DI+ + F+VAKTL I E +L +I+EIG H+RI EGV++
Sbjct: 254 VDNALQLLDSLWDKGYSAIDIVTSTFKVAKTLPGINEQKRLDMIKEIGFAHMRILEGVST 313
Query: 296 LLQLSGLLARLC 307
LQL GL ++LC
Sbjct: 314 YLQLCGLYSKLC 325
>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
Length = 323
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/310 (58%), Positives = 243/310 (78%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ DIVGNE+TVERLK+ GN+PN+IISG PG+GKTT+I CLA LLG
Sbjct: 12 VEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGDEH 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ A +ELNAS+DRGID VRNKIK FAQ K++LPPGR KI+ILDEADSMT GAQQALRRT
Sbjct: 72 YHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQALRRT 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+EIYSNTTRFA ACN S KIIEP+QSRCA+LRYN+L+D ++L++++EI + E++ + +G
Sbjct: 132 IEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVKYNTEG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMK 238
L+A++FTA+GDMRQA+NNLQST GFG V VFK+ D+PHPL ++ +LL+C+ + ++
Sbjct: 192 LQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQSILLSCLKDKDID 251
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ ++ L+ GY+ DI+ + F+VAKT+ +I E +L +I+EIG H+R+ EGV + L
Sbjct: 252 KALGLLDGLWYKGYSAIDIVTSTFKVAKTIPNISEQKRLDVIKEIGFAHMRVLEGVATYL 311
Query: 298 QLSGLLARLC 307
QL GL A++C
Sbjct: 312 QLCGLYAKIC 321
>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 323
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/310 (58%), Positives = 243/310 (78%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGNE+TVERLK+ GN+PN+I+SG PG+GKTT+I CLA LLG +
Sbjct: 12 VEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMILSGLPGIGKTTSIHCLAYELLGEEY 71
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
A +ELNAS+DRGID VRNKIK FAQ K++LPPGR KI+ILDEADSMT GAQQALRRT
Sbjct: 72 YHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQALRRT 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRFA ACN S KIIEP+QSRCA+LRYN+L+D ++L++++EI + E++ + +G
Sbjct: 132 MEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVQYNTEG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMK 238
L+A+VFTA+GDMRQA+NNLQST GF V VFK+ D+PHPL ++ +LL+C+ + ++
Sbjct: 192 LQALVFTAEGDMRQAINNLQSTVAGFEFVNDVNVFKIVDQPHPLVIQSILLSCLRDKDID 251
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ +++ L+ GY+ DI+ + F+VAKT+ +I E +L +I+EIG H+R+ EGV + L
Sbjct: 252 KALELLDGLWYKGYSAIDIVTSTFKVAKTIPNINEQKRLDLIKEIGFAHMRVLEGVATYL 311
Query: 298 QLSGLLARLC 307
QL GL A++C
Sbjct: 312 QLCGLYAKIC 321
>gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 349
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/299 (59%), Positives = 234/299 (78%), Gaps = 6/299 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGNE+TV RL+ S +GN+PN+I++GPPG GKTT++ LAR LLG S+
Sbjct: 35 VEKYRPRVLEDVVGNEETVSRLRAISRTGNLPNLILAGPPGTGKTTSVHALARQLLGASY 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS+ RGID VRN+IK FA KVTLPPGRHKI+ILDEADSMT AQQALRRTM
Sbjct: 95 KDAVLELNASDARGIDVVRNRIKSFAMNKVTLPPGRHKIIILDEADSMTSAAQQALRRTM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRF LACN S KIIE IQSR A+LRY++L + Q+L+ ++++C+ E+IS+TND L
Sbjct: 155 ELYSNTTRFCLACNVSTKIIEAIQSRAAILRYSRLANEQVLTCLLKVCQAESISYTNDAL 214
Query: 181 EAIVFTAQGDMRQALNNLQSTH---NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
EAI+FTA+GDMR ALNNLQ+++ NG ++ VFKVCD+PHP V +++ +C +G+
Sbjct: 215 EAILFTAEGDMRHALNNLQASYFLTNGI--ISQTSVFKVCDQPHPKTVGQIISHCTKGDT 272
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNS 295
K + + L+K GY+ DIIG +F+V K ++PE LKL ++EIG +RIS+GVNS
Sbjct: 273 KAACDQMQALWKSGYSTNDIIGTVFKVVKAHGELPEALKLEYLREIGFTQMRISDGVNS 331
>gi|424513766|emb|CCO66388.1| replication factor C subunit 2 [Bathycoccus prasinos]
Length = 373
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/310 (57%), Positives = 238/310 (76%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEK+RP DIVG+E+T+ +++ +G++PN+++SGPPG GKTT++ LAR LLG +
Sbjct: 27 IEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNLLLSGPPGCGKTTSVHVLARTLLGDRY 86
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS++RGID VRNKIKMFAQ+KVTLP GR KI+ILDEAD+MT GAQQA+RRTM
Sbjct: 87 KDAVLELNASDERGIDVVRNKIKMFAQKKVTLPAGRCKIIILDEADAMTKGAQQAMRRTM 146
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA++R+++L+D Q+L +++ +CE+E + H GL
Sbjct: 147 EIYSATTRFALACNLSDKIIEPIQSRCAIVRFSRLSDKQVLERLVYVCEQEKVPHDARGL 206
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVF A+GDMR ALN+LQ+ H+GF V E VF+VCD PHP + +L +C+ G + D+
Sbjct: 207 EAIVFCAEGDMRNALNSLQACHSGFQMVNQENVFRVCDTPHPEVIGAILQHCLNGELDDA 266
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD---IPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ L K GY+P+D+I IF+V K D + E +KL ++ IG H+RISEG S +
Sbjct: 267 CDRLLKLRKSGYSPQDLIKTIFQVCKRFDDKEMSEYVKLEFLKIIGFFHVRISEGCASDV 326
Query: 298 QLSGLLARLC 307
QL G++ARLC
Sbjct: 327 QLCGMVARLC 336
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/308 (60%), Positives = 240/308 (77%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGN +T++RL+ + GN+P++IISG PG+GKTT+I CLA LLG S+
Sbjct: 15 VEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTSIHCLAHELLGDSY 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ VRN+IK FAQ+K LPPG++KI+ILDEADSMT GAQQALRRTM
Sbjct: 75 KQAVLELNASDDRGIEVVRNQIKHFAQKKCHLPPGKNKIIILDEADSMTSGAQQALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFA ACN S KIIEP+QSRCA+LRYNKL+D ++L ++++I E EN+ +TNDGL
Sbjct: 135 ELYSNTTRFAFACNQSNKIIEPLQSRCAILRYNKLSDEEVLKRLLQIIELENVQYTNDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G V + VFK+ D PHPL VK+MLL+ + +S
Sbjct: 195 EAIIFTAEGDMRQAINNLQSTVAGHTLVNGDNVFKIVDSPHPLIVKKMLLS---KELDES 251
Query: 241 YKII-HHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
I+ + L+ GY+ DI+ FRV K L I E L+L II+EIG H+RI EGV + LQ
Sbjct: 252 IDILRNELWDKGYSSIDIVTTCFRVMKILYQIKESLRLEIIKEIGFTHMRILEGVGTYLQ 311
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 312 LACMLAKI 319
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/308 (59%), Positives = 239/308 (77%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGNE+T+ RLK + GN+P++IISG PG+GKTT++LCLA LLG +
Sbjct: 13 VEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLAHELLGDDY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGI+ VRN+IK FAQ+K LPPG+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 73 SKAVLELNASDDRGIEVVRNQIKQFAQKKSLLPPGKHKIIILDEADSMTAGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY KL+D Q+L ++++I + E++ +TNDGL
Sbjct: 133 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLQIIKAEDVKYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN-CVEGNMKD 239
EAI+FTA+GDMRQA+NNLQST G G V + VFK+ D PHPL V++MLL ++ ++
Sbjct: 193 EAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLVVRKMLLAPTLDESLTH 252
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K L+ GY+ DI+ FRV K+L DI E +L +I+EIG H+RI EGV++ LQ
Sbjct: 253 LRK---DLWGKGYSAVDIVTTSFRVTKSLFDIRESKRLEMIKEIGITHMRILEGVSTYLQ 309
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 310 LASMLAKI 317
>gi|281339983|gb|EFB15567.1| hypothetical protein PANDA_008825 [Ailuropoda melanoleuca]
Length = 244
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/235 (72%), Positives = 206/235 (87%)
Query: 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALA 132
RGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTMEIYS TTRFALA
Sbjct: 1 RGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALA 60
Query: 133 CNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMR 192
CN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGLEA++FTAQGDMR
Sbjct: 61 CNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMR 120
Query: 193 QALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGY 252
QALNN+QST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++YKI+ HL+ LGY
Sbjct: 121 QALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMVQHCVNANVDEAYKILAHLWHLGY 180
Query: 253 APEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++GLLARLC
Sbjct: 181 SPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLC 235
>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
Length = 321
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/308 (59%), Positives = 236/308 (76%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ SD VGNE+T+ RL+ + GN+P++IISG PG+GKTT+I CLA LLG S+
Sbjct: 13 VEKYRPKQLSDTVGNEETIHRLQQIAKDGNMPHLIISGLPGIGKTTSIHCLAHELLGDSY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
VLELNAS+DRGID VRN+IK FAQ+K L PG+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 73 SQGVLELNASDDRGIDVVRNQIKQFAQKKCHLEPGKHKIIILDEADSMTAGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSNTTRFA ACN S KIIEP+QSRCA+LRY+KL+D Q+L +++EI + EN+ +TNDGL
Sbjct: 133 ELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKAENVQYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA+GDMRQA+NNLQST G V+ E VFK+ D PHPL VK+MLL + +S
Sbjct: 193 EALIFTAEGDMRQAVNNLQSTVAGHSLVSGENVFKIVDSPHPLVVKKMLL---APTLDES 249
Query: 241 YKII-HHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L+ GY+ DI+ FRV KTL + E +L +I+EIG H+RI EGV + LQ
Sbjct: 250 IALFKNELWDKGYSSVDIVTTCFRVTKTLYQLKEAKRLEMIKEIGIAHMRILEGVGTYLQ 309
Query: 299 LSGLLARL 306
L+ LLA++
Sbjct: 310 LACLLAKI 317
>gi|430811901|emb|CCJ30656.1| unnamed protein product [Pneumocystis jirovecii]
Length = 345
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 235/307 (76%), Gaps = 7/307 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLKV S +GN+ G PG+GKTT+++CLA +LG +F
Sbjct: 32 VEKYRPTRLEDIVGNTETIERLKVISVNGNM------GMPGIGKTTSVMCLAHQMLGSAF 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+AVLELNAS++RGID VRN+IK F+Q+KV LPPG+HKI++LDEADSMT GAQQALRR M
Sbjct: 86 GEAVLELNASDERGIDVVRNRIKGFSQKKVNLPPGKHKIIVLDEADSMTPGAQQALRRIM 145
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFA CN S KIIEPIQSRCA+LRY++LTD Q+L +++EIC+ ENI + +DGL
Sbjct: 146 EIYSNTTRFAFICNQSNKIIEPIQSRCAILRYSRLTDQQILQRLLEICKIENIQYNDDGL 205
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++F+++GDMRQA+NNLQST GFG V E VFKV D+P P A+K ++ +C +G++ +
Sbjct: 206 SALIFSSEGDMRQAINNLQSTVMGFGFVKGENVFKVVDQPSPGAIKNIIHSCEKGDINTA 265
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L LGY+ DII F+V K +D +PE +L I+EIG H+ I EGV + LQL
Sbjct: 266 IETLKDLLNLGYSVLDIITTFFKVVKMMDELPEYTRLEYIKEIGTTHMIILEGVQTSLQL 325
Query: 300 SGLLARL 306
GLLARL
Sbjct: 326 CGLLARL 332
>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 321
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/309 (56%), Positives = 242/309 (78%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVGNE+TVERLK+ + GN+P++IISG PG+GKTT++ CLA LLG +
Sbjct: 11 VEKYRPRVLDDIVGNEETVERLKIIAKDGNIPHMIISGLPGIGKTTSVHCLAYELLGKEY 70
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
A +ELNAS+DRGID VRNKIK FAQ K+ +PPGR KI+ILDEADSMT GAQQALRRT
Sbjct: 71 YHQATMELNASDDRGIDVVRNKIKQFAQTKILIPPGRTKIIILDEADSMTPGAQQALRRT 130
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYSNTTRF ACN S KIIEP+QSRCA+LRYNKL+D ++L++++EI + E++ N+G
Sbjct: 131 MEIYSNTTRFVFACNQSLKIIEPLQSRCAILRYNKLSDEEVLARLLEIIKAEDVKFNNEG 190
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L+A++F+A+GDMRQA+NNLQST GFG V VFK+ D+PHPL ++++L + ++ ++
Sbjct: 191 LQALIFSAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQKILTHSLKKDIDQ 250
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ +++ L+ GY+ DI+ F+VAKT+ ++ E +L +I+EIG H+R+ EG+ + LQ
Sbjct: 251 ALQLLDGLWLKGYSAIDIVTLSFKVAKTIPNVDELKRLEMIKEIGFTHMRVLEGLGTYLQ 310
Query: 299 LSGLLARLC 307
LSG+ A++C
Sbjct: 311 LSGMYAKIC 319
>gi|323451834|gb|EGB07710.1| hypothetical protein AURANDRAFT_59087 [Aureococcus anophagefferens]
Length = 313
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/297 (56%), Positives = 230/297 (77%)
Query: 10 SDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69
SD+VGNE+T+ +L+ + GN+PNII+SGPPG GKTT++LCLAR +LG ++K+AVLE+NA
Sbjct: 13 SDVVGNEETISKLRAVVAGGNMPNIILSGPPGTGKTTSMLCLAREMLGANYKEAVLEMNA 72
Query: 70 SNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRF 129
S++RGI VR+KIKMFA++KV LPPG HK+VILDEADSMT AQQA+RRTME++S TTRF
Sbjct: 73 SDERGIMVVRDKIKMFAKKKVNLPPGAHKLVILDEADSMTAAAQQAMRRTMELFSGTTRF 132
Query: 130 ALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG 189
ALACN S KI EPIQSRCA+LR+ +L+D +LL ++ +C E ++ T+ GLEA++FTA+G
Sbjct: 133 ALACNTSSKISEPIQSRCAILRFTRLSDKELLKRLTHVCGAEGVAATDGGLEALIFTAEG 192
Query: 190 DMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYK 249
DMR ALNNLQSTH+GFG V + VFKVCD+PHP +++L +C + ++ + I L+
Sbjct: 193 DMRNALNNLQSTHSGFGAVDEQSVFKVCDQPHPHVARKILDDCAKRDLDAAVAGIAGLHA 252
Query: 250 LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARL 306
GYA DI+ +F+V K +PE +L I+EIG H R+ +G +L QL+GL+ARL
Sbjct: 253 TGYAAVDIVATLFKVIKMHPMPEADQLKFIKEIGFAHTRVIDGCATLTQLTGLVARL 309
>gi|403217950|emb|CCK72442.1| hypothetical protein KNAG_0K00740 [Kazachstania naganishii CBS
8797]
Length = 319
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/309 (59%), Positives = 232/309 (75%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNEDT+ERLK GN+P++IISG PG+GKTT+I CLA +LG
Sbjct: 10 VEKYRPHKLDDIVGNEDTIERLKEIVKDGNMPHMIISGLPGIGKTTSIQCLANEMLGEKL 69
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
AVLELNAS+DRGID VRN+IK FAQ K LPPG+HKIVILDEADSMT GAQQALRRT
Sbjct: 70 LGSAVLELNASDDRGIDVVRNQIKHFAQVKCHLPPGKHKIVILDEADSMTSGAQQALRRT 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+YSNTTRFA ACN S KIIEP+QSRCA+LRY+KL D Q+L ++++I + E++ +TNDG
Sbjct: 130 MELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLNDEQVLKRLLQIIKLEDVQYTNDG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI+FTA+GDMRQA+NNLQST G G V + VF++ D PHPL VK+MLL D
Sbjct: 190 LEAIIFTAEGDMRQAINNLQSTAAGHGLVNGDNVFRIVDSPHPLIVKKMLL---AEQFDD 246
Query: 240 SYKII-HHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ I+ L+ GY+ DI+ FRV K+L + E +L +++EIG H+RI EGV + L
Sbjct: 247 ALAILKKELWDKGYSAVDIVTTCFRVTKSLFQVKEAKRLEMMKEIGITHMRILEGVGTYL 306
Query: 298 QLSGLLARL 306
QL+ ++AR+
Sbjct: 307 QLAAMVARI 315
>gi|449479988|ref|XP_002192040.2| PREDICTED: replication factor C subunit 2-like [Taeniopygia
guttata]
Length = 409
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/218 (78%), Positives = 199/218 (91%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP S+IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 191 VEKYRPMKLSEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 250
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 251 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 310
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L+++++I EKE++++T+DGL
Sbjct: 311 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGL 370
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD 218
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKV +
Sbjct: 371 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVSN 408
>gi|222629391|gb|EEE61523.1| hypothetical protein OsJ_15825 [Oryza sativa Japonica Group]
Length = 306
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/279 (62%), Positives = 218/279 (78%)
Query: 38 GPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH 97
GPPG GKTT+IL LA LLGPS+++AVLELNAS+DRG+D VRNKIKMFAQ+KVTL PGRH
Sbjct: 28 GPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRH 87
Query: 98 KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTD 157
KIVILDEADSMT GAQQALRRTMEIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D
Sbjct: 88 KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 147
Query: 158 AQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVC 217
++L +++ + E + + +GLEAI+FTA GDMRQALNNLQ+T +GF V E VFKVC
Sbjct: 148 QEILGRLMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVC 207
Query: 218 DEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLS 277
D+PHPL VK M+ N ++G ++ + LY LGY+P DII +FRV K D+ E LKL
Sbjct: 208 DQPHPLHVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLE 267
Query: 278 IIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKNKKT 316
+++E G H+RI +GV S LQLSGLLA+ +V K +
Sbjct: 268 LLKETGFAHMRICDGVGSFLQLSGLLAKFALVRETAKAS 306
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 179/308 (58%), Positives = 236/308 (76%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T+ RL+ + GN+P++IISG PG+GKTT+I CLA LLG ++
Sbjct: 13 VEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELLGDAY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VRN+IK FAQ+K LPPG+HKI+ILDEADSMT GAQQALRRTM
Sbjct: 73 SRAVLELNASDDRGIDVVRNQIKHFAQKKCYLPPGKHKIIILDEADSMTAGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++SN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D Q+L +++EI + E++ +TNDGL
Sbjct: 133 ELFSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKLEDVKYTNDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V + VFK+ D PHPL V+ MLL + ++
Sbjct: 193 EAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLIVRRMLL---APTLDEA 249
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ L+ GY+ DI+ FRV K L ++ E +L +I+EIG H+RI EGV++ LQ
Sbjct: 250 LTYLRDDLWGKGYSAVDIVTTSFRVTKNLFELKENKRLEMIKEIGITHMRILEGVSTYLQ 309
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 310 LASMLAKI 317
>gi|330796823|ref|XP_003286464.1| replication factor C subunit [Dictyostelium purpureum]
gi|325083587|gb|EGC37036.1| replication factor C subunit [Dictyostelium purpureum]
Length = 498
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 174/293 (59%), Positives = 223/293 (76%), Gaps = 1/293 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TV RL+ S GN+PNIIISGPPG GKTT+ILCLAR LLGP++
Sbjct: 13 VEKYRPIEIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTTSILCLARALLGPNY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AV ELNAS+DR +D VR+KIK FAQ+KVTLPPGRHKI+ILDE DSMT GAQQALRR M
Sbjct: 73 KEAVYELNASDDRTLDVVRDKIKSFAQKKVTLPPGRHKIIILDEVDSMTSGAQQALRRIM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFA ACN S KIIEPIQSRCA+LR+ KL + Q+ +++ E+ E + T+DGL
Sbjct: 133 ELYSSTTRFAFACNQSTKIIEPIQSRCAVLRFTKLNNLQIAARLKEVMTIEKVPFTDDGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FT++GDMRQALNNLQ+T +G G V AE V +VCD+PHP ++ ++ C + N+ +
Sbjct: 193 EALIFTSEGDMRQALNNLQATFSGLGLVNAENVNRVCDQPHPKIIRAIIEQCSKSNVNVA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLRISEG 292
YK + L+ G++ DII +F + K I PE KL ++EIG +LR S G
Sbjct: 253 YKHLKTLWDEGFSSIDIISALFSLTKASTILPEYQKLEFLKEIGFCNLRASTG 305
>gi|397618558|gb|EJK64947.1| hypothetical protein THAOC_14258 [Thalassiosira oceanica]
Length = 338
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/322 (55%), Positives = 234/322 (72%), Gaps = 9/322 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGNEDT+ RL+ + GN+PN+I+ GPPG GKTT++ LAR LLG ++
Sbjct: 17 VEKYRPRLLGDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGSAY 76
Query: 61 KDAVLELNASNDRGIDT-------VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 113
+ VLELNAS+ RGID VR+ I + + T HKI+ILDEADSMT AQ
Sbjct: 77 SNGVLELNASDSRGIDVSMEESRHVRSLISV--TRYTTAYLFSHKIIILDEADSMTSAAQ 134
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
QALRRTMEIYSNTTRFALACN S KIIEPIQSR A+LRY++LTD Q+L ++ +C++E +
Sbjct: 135 QALRRTMEIYSNTTRFALACNISTKIIEPIQSRAAILRYSRLTDEQILQRLQYVCKEEEV 194
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
++T+ GLEAI+FTA+GDMR ALNNLQ+T +GF V VFKVCD+PHP VK ++ +C+
Sbjct: 195 TYTDGGLEAIIFTAEGDMRNALNNLQATVSGFEMVNKANVFKVCDQPHPETVKGIISSCL 254
Query: 234 EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+G ++ + L++ GY+ DIIG IF+V K DIPE LKL ++EIG H+RI++GV
Sbjct: 255 KGETSEAVTKVKDLWQTGYSCSDIIGTIFKVTKLYDIPEALKLEYLKEIGFTHMRIADGV 314
Query: 294 NSLLQLSGLLARLCIVGSKNKK 315
+LLQL GL ARLC S K+
Sbjct: 315 GTLLQLLGLAARLCEKASVGKQ 336
>gi|260943850|ref|XP_002616223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849872|gb|EEQ39336.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 304
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 176/299 (58%), Positives = 233/299 (77%), Gaps = 3/299 (1%)
Query: 12 IVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-FKDAVLELNAS 70
++GNE+T+ERLK+ GN+P++IISG PG+GKTT+I CLA LLGP + A LELNAS
Sbjct: 3 LLGNEETIERLKLIVQDGNMPHMIISGLPGIGKTTSIHCLAYELLGPDLYNQATLELNAS 62
Query: 71 NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFA 130
+DRGID VRNKIK FAQ K++LPPGRHKI+ILDEADSMT GAQQALRRTME+YSNTTRFA
Sbjct: 63 DDRGIDVVRNKIKQFAQTKISLPPGRHKIIILDEADSMTPGAQQALRRTMELYSNTTRFA 122
Query: 131 LACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGD 190
ACN S KIIEP+QSRCA+LRYNKL D Q+LS+++EI + E++ ++G++A++FTA+GD
Sbjct: 123 FACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIIKAEDVKANSEGIKALIFTAEGD 182
Query: 191 MRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEML-LNCVEGNMKDSYKIIHHLYK 249
MRQA+NNLQST GFG V VFK+ D+PHPL +K++L + ++ + ++ L+
Sbjct: 183 MRQAINNLQSTVAGFGFVNDTNVFKIVDQPHPLVIKKILDAAALHKDIDTAIDLLDTLWN 242
Query: 250 LGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
GY+ DI+ + F+VAKTL + E +L +I+EIG VH+R+ EGV+S LQL GL A+L
Sbjct: 243 KGYSAIDIVTSSFKVAKTLPHVNESKRLDMIKEIGFVHMRVLEGVSSYLQLCGLFAKLA 301
>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
Length = 324
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 166/310 (53%), Positives = 231/310 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP T DI+GN + RL+ + GN+PN+++ GPPG GKTT++LCLAR LLG F
Sbjct: 9 IEKYRPTTLDDIIGNPEITTRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLARELLGTHF 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AV+ELNAS+DRG+D VR IK FA++ + LPP +HKIVILDE DSMT+ AQQALRR M
Sbjct: 69 KSAVIELNASDDRGVDVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEPAQQALRRIM 128
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN S KIIEPIQSRCA++RY+KL D Q+L +++ IC+ EN+++T++G+
Sbjct: 129 ELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTICDMENLTYTDEGM 188
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++F+A GD+R+A+NNLQ GF VT + VFKVCD P P +++ML NC+ GN + +
Sbjct: 189 EALLFSADGDLRRAVNNLQIVSAGFKVVTKDNVFKVCDIPSPDLIQKMLENCLNGNWRQA 248
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ + L +LG++P DI+ + V KT+D PE + L I+ + H+ + G+++ LQL
Sbjct: 249 HEKVDQLLELGHSPVDILVTMRNVLKTMDAPEHVLLEYIKSVALSHMTMVNGLSTQLQLE 308
Query: 301 GLLARLCIVG 310
LLA LC +
Sbjct: 309 KLLANLCKIA 318
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 170/307 (55%), Positives = 231/307 (75%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+T ++VGN V RL+ G++P++++SGPPG GKTT ILCLAR LLG
Sbjct: 6 VEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLGEEW 65
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F AVLELNAS+DRGID +R+K+K FAQQK++LP G+HKIVILDEADSMT+GAQQALRRT
Sbjct: 66 FSQAVLELNASDDRGIDVIRSKVKTFAQQKMSLPSGKHKIVILDEADSMTEGAQQALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIY+ TTRFALACN KIIEPIQSRCA++R +L D+++ ++ ++ EN+ N G
Sbjct: 126 MEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLRLENVEWENSG 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI+FTA GDMR ALNN Q+T GFG ++ E VFKVCD+PHP VK++L + +E N+
Sbjct: 186 LEAILFTADGDMRNALNNAQATVCGFGKLSQENVFKVCDQPHPNLVKQILESALEQNVTK 245
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
S +I+ L+ GY+ DI+ +FRVA++ ++ E L+L +++ +G H++I EG SL+QL
Sbjct: 246 SNEILCSLWNKGYSALDIVQTLFRVARSHEMNEHLRLEVMKIVGKTHMKIMEGCASLIQL 305
Query: 300 SGLLARL 306
+ L + L
Sbjct: 306 TALTSFL 312
>gi|149063103|gb|EDM13426.1| replication factor C (activator 1) 2, isoform CRA_c [Rattus
norvegicus]
Length = 233
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 164/224 (73%), Positives = 198/224 (88%)
Query: 84 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPI 143
MFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTMEIYS TTRFALACN S+KIIEPI
Sbjct: 1 MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 60
Query: 144 QSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203
QSRCA+LRY KLTDAQ+LS+++ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +
Sbjct: 61 QSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFS 120
Query: 204 GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR 263
GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++YKI+ HL+ LGY+PED+IGNIFR
Sbjct: 121 GFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFR 180
Query: 264 VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
V KT + E LKL I+EIG H++++EGVNSLLQ++GLLARLC
Sbjct: 181 VCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLC 224
>gi|148687477|gb|EDL19424.1| replication factor C (activator 1) 2, isoform CRA_b [Mus musculus]
Length = 233
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 163/224 (72%), Positives = 198/224 (88%)
Query: 84 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPI 143
MFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTMEIYS TTRFALACN S+KIIEPI
Sbjct: 1 MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 60
Query: 144 QSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203
QSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +
Sbjct: 61 QSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFS 120
Query: 204 GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR 263
GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++YKI+ HL+ LGY+PED+IGNIFR
Sbjct: 121 GFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFR 180
Query: 264 VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
V KT + E LKL I+EIG H++++EGVNSLLQ++GLLARLC
Sbjct: 181 VCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLC 224
>gi|67540694|ref|XP_664121.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|40738667|gb|EAA57857.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|259480087|tpe|CBF70899.1| TPA: subunit of heteropentameric replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 289
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 161/248 (64%), Positives = 206/248 (83%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +TVERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG S+
Sbjct: 31 VEKYRPVFLDDVVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDSY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++ ++C+ E + +T DGL
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQIVKRLKQVCDAEQVKYTEDGL 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQALNNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQALNNLQSTWSGFGLVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDSA 270
Query: 241 YKIIHHLY 248
+ ++ L+
Sbjct: 271 LETLNELW 278
>gi|407399789|gb|EKF28431.1| replication factor C, subunit 4, putative [Trypanosoma cruzi
marinkellei]
Length = 340
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/331 (52%), Positives = 239/331 (72%), Gaps = 20/331 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--- 57
+EKYRP++ DIVGN D V RL+V S GN+PN+++ GPPG GKTT++LCLAR LL
Sbjct: 9 VEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLSDQD 68
Query: 58 ----PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP----------GRHKIVILD 103
+ K+AVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVILD
Sbjct: 69 GGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKMNLHKIVILD 128
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT AQQALRRTME++S+TTRFA ACNNS KIIEPIQSRCA++R+ KLT A +L +
Sbjct: 129 EADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADILKR 188
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
+ I ++EN+++T+DGLEA+++ A+GD+R A+N LQ+TH+G+G V AE VFKVCD+PHPL
Sbjct: 189 LTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATHSGYGMVNAENVFKVCDQPHPL 248
Query: 224 AVKEMLLNCVE-GNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI--PEPLKLSIIQ 280
V+ ++ C++ ++ ++K + L GYA D+I FR A+ + E +L++++
Sbjct: 249 LVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQQQLAVLR 308
Query: 281 EIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
IG +RI+EGV + LQL+ +LAR+ +V +
Sbjct: 309 IIGETTMRIAEGVGTPLQLASMLARITMVNT 339
>gi|71654812|ref|XP_816018.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL
Brener]
gi|70881118|gb|EAN94167.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
Length = 340
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/331 (52%), Positives = 239/331 (72%), Gaps = 20/331 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--- 57
+EKYRP++ DIVGN D V RL+V S GN+PN+++ GPPG GKTT++LCLAR LL
Sbjct: 9 VEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLSDQD 68
Query: 58 ----PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP----------GRHKIVILD 103
+ K+AVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVILD
Sbjct: 69 GGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINLHKIVILD 128
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT AQQALRRTME++S+TTRFA ACNNS KIIEPIQSRCA++R+ KLT A +L +
Sbjct: 129 EADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADILKR 188
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
+ I ++EN+++T+DGLEA+++ A+GD+R A+N LQ+TH+G+G V AE VFKVCD+PHPL
Sbjct: 189 LTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATHSGYGMVNAENVFKVCDQPHPL 248
Query: 224 AVKEMLLNCVE-GNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI--PEPLKLSIIQ 280
V+ ++ C++ ++ ++K + L GYA D+I FR A+ + E +L++++
Sbjct: 249 LVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQQQLAVLR 308
Query: 281 EIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
IG +RI+EGV + LQL+ +LAR+ +V +
Sbjct: 309 IIGETTMRIAEGVGTPLQLASMLARITMVNT 339
>gi|449016080|dbj|BAM79482.1| replication factor C subunit 2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/314 (54%), Positives = 229/314 (72%), Gaps = 8/314 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+T S++VGN+ VERL+ + SGNVP++++ GPPGVGKTT L LAR LG +
Sbjct: 8 IEKYRPRTLSEVVGNQPVVERLRALALSGNVPHLLLVGPPGVGKTTVALALARDTLGDAL 67
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ AVLELNAS++RGID VRNKIKMF QQ VTLPPGRHK++ILDEADSMT AQQALRR
Sbjct: 68 IQQAVLELNASDERGIDVVRNKIKMFCQQHVTLPPGRHKLIILDEADSMTPAAQQALRRI 127
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+YS+TTRFALA N S KIIEPIQSRCA++R+ +L D + S+++ + E+E++ + DG
Sbjct: 128 MELYSSTTRFALAANVSSKIIEPIQSRCAVIRFRRLGDEAVRSRLVSVLEEEHVPYEPDG 187
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+E IVFTA GDMRQALNN Q+T GFG +T E+V +VCD P P ++ L C +
Sbjct: 188 IETIVFTADGDMRQALNNAQATWFGFGVITTEHVLRVCDSPSPARLRRFLELCETQKFEQ 247
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-------PEPLKLSIIQEIGNVHLRISEG 292
+ I +++ GYA D++ +FRVA+T + L+L ++EIG H+RI++G
Sbjct: 248 AVGEIEAIWRSGYAASDLVATLFRVARTQAMITEGGERGRDLRLEFLREIGLTHMRITDG 307
Query: 293 VNSLLQLSGLLARL 306
++SLLQL+ L ++L
Sbjct: 308 LSSLLQLTALASKL 321
>gi|238494006|ref|XP_002378239.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
flavus NRRL3357]
gi|220694889|gb|EED51232.1| DNA replication factor C subunit Rfc4, putative [Aspergillus flavus
NRRL3357]
Length = 295
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 160/258 (62%), Positives = 210/258 (81%), Gaps = 1/258 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR LLG ++
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEPIQSRCA+LRY +LTD Q++ ++ ++C+ E + HT DG+
Sbjct: 151 EIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQVVKRLKQVCDAEKVEHTEDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST +GFG V+ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAA 270
Query: 241 YKIIHHLYKLGYAPEDII 258
+ ++ L+ + Y D++
Sbjct: 271 LETLNELWYV-YMMRDVM 287
>gi|294867359|ref|XP_002765080.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239864960|gb|EEQ97797.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 344
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/313 (54%), Positives = 232/313 (74%), Gaps = 6/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + SD+VGNE ++RL+ + ++PN+++SGPPG GKTT+++CLAR LLG
Sbjct: 18 VEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLGEDL 77
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALR 117
K AVLELNAS+DRGID VRN+IK FAQQK++LP G + KIVILDEADSMT+ AQQA+R
Sbjct: 78 VKTAVLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQAMR 137
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTMEI+S TTRFALACN S KIIEPIQSRCA++R+++L D+ + ++V ++ + E +
Sbjct: 138 RTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADMEEVQLRG 197
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
DGLEA++FTA+GDMR ALNNLQST GFG VT E VFKVCD+P P +K+ L+CV +
Sbjct: 198 DGLEALIFTAEGDMRAALNNLQSTATGFGIVTRENVFKVCDQPQPGELKQATLDCVNNDW 257
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---DIPEPLKLSIIQEIGNVHLRISEGVN 294
++ + + GY+ DI+G + RV + L ++ E +K+ +Q I LR+SEG+
Sbjct: 258 CSAFDRLDRITAQGYSIGDIVGTLERVIRNLPPEELNEAIKIEFLQAIAMCRLRMSEGLQ 317
Query: 295 SLLQLSGLLARLC 307
S +QLSGL+A +C
Sbjct: 318 SRVQLSGLVAAMC 330
>gi|401424285|ref|XP_003876628.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 360
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 243/343 (70%), Gaps = 37/343 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRPQT +DIVGN + + RL+V + GN+PN+++ GPPG GKTT++LCLAR LL S
Sbjct: 9 VEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQST 68
Query: 60 ----------------FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG-------- 95
KDAVLELNAS+DRG+D VR KIK+FAQ K TLP
Sbjct: 69 DAGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTGEGV 128
Query: 96 --------RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
HKIV+LDEADSMT AQQALRRTME++S+TTRFA ACNNS KIIEPIQSRC
Sbjct: 129 AKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPIQSRC 188
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A++R+ KL+DA +L +++ + ++EN+S+T+DGLEA+++ A+GD+RQALN LQ+TH G+G
Sbjct: 189 AVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQATHTGYGL 248
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
V A+ VFKVCD+PHPL V+ ++ CV + N++++++ ++ L GYAP D+I F+V +
Sbjct: 249 VNADNVFKVCDQPHPLLVENVITACVMKRNIEEAHREMNRLLNRGYAPVDVIATFFKVVQ 308
Query: 267 T---LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARL 306
T L E +L +++ +G +RI+EGV + LQL+ +LAR+
Sbjct: 309 TNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARM 351
>gi|154339736|ref|XP_001565825.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 360
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 245/343 (71%), Gaps = 37/343 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRPQT +DIVGN + + RL+V + GN+PN+++ GPPG GKTT++LCLAR LL S
Sbjct: 9 VEKYRPQTVTDIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQST 68
Query: 60 ----------------FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP---------P 94
KDAVLELNAS+DRG+D VR KIK+FAQ K TLP P
Sbjct: 69 DASSAGTSLGGSTKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTGEGP 128
Query: 95 GR-------HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
R HKIV+LDEADSMT AQQALRRTME++S+TTRFA ACNNS KIIEPIQSRC
Sbjct: 129 TRDEHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPIQSRC 188
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A++R+ KL+DA +L +++ + ++E++S+T+DGLEA+++ A+GD+RQALN+LQ+TH G+G
Sbjct: 189 AVVRFKKLSDADILKRLVYVIQQESVSYTDDGLEALLYLAEGDLRQALNSLQATHTGYGL 248
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
V A+ VFKVCD+PHP+ V+ ++ C+ + ++ +++K ++ L GYAP D+I F+V +
Sbjct: 249 VNADNVFKVCDQPHPVLVENIITACITKRSIDEAHKEMNRLLNRGYAPVDVIATFFKVVQ 308
Query: 267 T---LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARL 306
T L E +L +++ +G +RI+EGV + LQL+ +LAR+
Sbjct: 309 TNARLFRSELQQLEVLKIVGETTMRIAEGVGTSLQLAAMLARM 351
>gi|389593215|ref|XP_003721861.1| putative replication factor C, subunit 4 [Leishmania major strain
Friedlin]
gi|321438363|emb|CBZ12115.1| putative replication factor C, subunit 4 [Leishmania major strain
Friedlin]
Length = 360
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 242/343 (70%), Gaps = 37/343 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRPQT DIVGN + + RL+V + GN+PN+++ GPPG GKTT++LCLAR LL S
Sbjct: 9 VEKYRPQTVVDIVGNTEAISRLQVIAKQGNLPNLLLCGPPGTGKTTSMLCLARDLLLQST 68
Query: 60 ----------------FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG-------- 95
KDAVLELNAS+DRG+D VR KIK+FAQ K TLP
Sbjct: 69 DTGSAGASPGGAMKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTGEGV 128
Query: 96 --------RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
HKIV+LDEADSMT AQQALRRTME++S+TTRFA ACNNS +IIEPIQSRC
Sbjct: 129 AKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRC 188
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A++R+ KL+DA +L +++ + + EN+S+T+DGLEA+++ A+GD+RQALN LQ+TH G+G
Sbjct: 189 AVVRFKKLSDADILKRLVYVIQHENVSYTDDGLEALLYLAEGDLRQALNALQATHTGYGL 248
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
V A+ VFKVCD+PHPL V+ ++ CV + N++++++ ++ L GYAP D+I F+VA+
Sbjct: 249 VNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIATFFKVAQ 308
Query: 267 T---LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARL 306
T L E +L +++ +G +RI+EGV + LQL+ +LAR+
Sbjct: 309 THARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARM 351
>gi|403223028|dbj|BAM41159.1| replication factor [Theileria orientalis strain Shintoku]
Length = 331
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 169/317 (53%), Positives = 229/317 (72%), Gaps = 7/317 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP + I+GN + +RL+ + GN+PN+++ GPPG GKTT++LCLAR +LG F
Sbjct: 9 IEKYRPNSLDQIIGNPEITKRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAREMLGLQF 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ------ 114
K+AV+ELNAS+DRG++ VR IK FA++ + LPP +HKIVILDE DSMT+ AQQ
Sbjct: 69 KNAVIELNASDDRGVEVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEAAQQWLTIQL 128
Query: 115 -ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRR MEIYSNTTRFALACN S KIIEPIQSRCA++RY+KL D Q+L ++++IC EN+
Sbjct: 129 KALRRIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRYSKLKDDQILKRLVDICGMENL 188
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
++TN+G+EA++F+A GD+R+A+NNLQ GF VT E VFKVCD P P +++ML +C+
Sbjct: 189 NYTNEGMEALLFSADGDLRRAVNNLQIVSAGFKVVTKENVFKVCDIPSPDLIQKMLGDCL 248
Query: 234 EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
GN + +++ L LG++P DII I V KTLD PE + L I+ + H+ + G+
Sbjct: 249 CGNWRSAHEKAVELLDLGHSPLDIIVTIRSVLKTLDAPEHVVLEYIKSVALAHMVMVNGL 308
Query: 294 NSLLQLSGLLARLCIVG 310
S LQL LLA LC +
Sbjct: 309 TSQLQLEKLLANLCKIA 325
>gi|209876285|ref|XP_002139585.1| replication factor C subunit 2 [Cryptosporidium muris RN66]
gi|209555191|gb|EEA05236.1| replication factor C subunit 2, putative [Cryptosporidium muris
RN66]
Length = 323
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 166/316 (52%), Positives = 229/316 (72%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VGNE+ + RLKV + GN+PN+++SGPPG GKTT+I CLA LLGP F
Sbjct: 7 IEKYRPKILDDMVGNEEVLIRLKVLAKQGNMPNLLLSGPPGTGKTTSIHCLAAELLGPKF 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VR++IK FA++K+ LP GRHKI+ILDE DSMTD AQQALRR M
Sbjct: 67 NRAVLELNASDDRGIDVVRDRIKSFAKEKIDLPFGRHKIIILDEVDSMTDTAQQALRRLM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS++TRFALACN S KIIEPIQSRCA++RY+KL+D Q+ ++ +I + ENI + + G+
Sbjct: 127 EVYSDSTRFALACNQSTKIIEPIQSRCAIIRYSKLSDEQIRERLFDIIKFENIPYIDSGI 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E ++FTA GDMR A+NNLQ+T+NGF ++ + V K+ D P P +K +L CV+ + + +
Sbjct: 187 ETLIFTADGDMRIAINNLQATYNGFTLISKDNVLKISDIPSPEKIKSILDACVKSDWRLA 246
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ I LY GY+P DI+ + V K + E L L ++E+G H + +G ++ LQL
Sbjct: 247 HNIAEELYSSGYSPLDIVITMRNVLKRYQLQETLILEYLKEVGRCHFVMLDGCSTELQLD 306
Query: 301 GLLARLCIVGSKNKKT 316
LL +LC+ + + T
Sbjct: 307 KLLGQLCLASATYETT 322
>gi|339898595|ref|XP_003392626.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
Length = 360
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 244/343 (71%), Gaps = 37/343 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRPQT +DIVGN + + RL+V + GN+PN+++ GPPG GKTT++LCLAR LL S
Sbjct: 9 VEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQST 68
Query: 60 ----------------FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP-----PGR-- 96
KDAVLELNAS+DRG+D VR KIK+FAQ K TLP G
Sbjct: 69 DTGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKFFSTGEGV 128
Query: 97 ---------HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
HKIV+LDEADSMT AQQALRRTME++S+TTRFA ACNNS +IIEPIQSRC
Sbjct: 129 AKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRC 188
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A++R+ KL+DA +L +++ + ++EN+S+T+DGLEA+++ A+GD+RQALN LQ+TH G+G
Sbjct: 189 AVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQATHTGYGL 248
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
V A+ VFKVCD+PHPL V+ ++ CV + N++++++ ++ L GYAP D+I F+V +
Sbjct: 249 VNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIATFFKVVQ 308
Query: 267 T---LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARL 306
T L E +L +++ +G +RI+EGV + LQL+ +LAR+
Sbjct: 309 TNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARM 351
>gi|407837802|gb|EKF99863.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
Length = 340
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 172/331 (51%), Positives = 238/331 (71%), Gaps = 20/331 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--- 57
+EKYRP++ DIVGN D V RL+V S GN+PN+++ GPPG GKTT++LCLAR LL
Sbjct: 9 VEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLSDQD 68
Query: 58 ----PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP----------GRHKIVILD 103
+ K+AVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVILD
Sbjct: 69 GGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINLHKIVILD 128
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT AQQALRRTME++S+TTRFA ACNNS KIIEPIQSRCA++R+ KLT A +L +
Sbjct: 129 EADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADILKR 188
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
+ I ++EN+++T+DGLEA+++ A+GD+R A+N LQ+T +G+G V AE VFKVCD+PHPL
Sbjct: 189 LTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATQSGYGMVNAENVFKVCDQPHPL 248
Query: 224 AVKEMLLNCVE-GNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI--PEPLKLSIIQ 280
V+ ++ C++ ++ ++K + L GYA D+I FR A+ + E +L++++
Sbjct: 249 LVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQQQLTVLR 308
Query: 281 EIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
IG +RI+EGV + LQL+ +LAR+ +V +
Sbjct: 309 IIGETTMRIAEGVGTPLQLASMLARITMVNT 339
>gi|323509483|dbj|BAJ77634.1| cgd3_1450 [Cryptosporidium parvum]
Length = 327
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 228/312 (73%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VGNE+ + RLKV + GN+PN+++SGPPG GKTT+I CLA +LG +
Sbjct: 7 IEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKTTSIHCLASEMLGSKY 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VR+KIK FA++K+ LP GRHKIVILDE DSMTD AQQALRR M
Sbjct: 67 GRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQALRRLM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS +TRFALACN S KIIEPIQSRCA++RY+KLTDAQ+ ++ EI + ENI + + G+
Sbjct: 127 EVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSGI 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +VFTA GDMR +NNLQ+T++GF V+ + V KV D P P +K +L +CV+ N + +
Sbjct: 187 DTLVFTADGDMRIVINNLQATYHGFSMVSRDNVLKVSDIPSPEKIKSILDSCVKCNWRLA 246
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ I+ L+ GY+P DI+ + V K +PE L ++E+G H + +G + LQL
Sbjct: 247 HSIVEELFIGGYSPLDIVITMRNVLKRYQLPERAILEYLKEVGRCHFVMLDGCATPLQLD 306
Query: 301 GLLARLCIVGSK 312
LL +LC++ ++
Sbjct: 307 KLLGQLCMISAR 318
>gi|67622295|ref|XP_667804.1| replication factor c subunit 4 [Cryptosporidium hominis TU502]
gi|54658967|gb|EAL37571.1| replication factor c subunit 4 [Cryptosporidium hominis]
Length = 327
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 228/312 (73%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VGNE+ + RLKV + GN+PN+++SGPPG GKTT+I CLA +LG +
Sbjct: 7 IEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKTTSIHCLASEMLGSKY 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VR+KIK FA++K+ LP GRHKIVILDE DSMTD AQQALRR M
Sbjct: 67 GRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQALRRLM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS +TRFALACN S KIIEPIQSRCA++RY+KLTDAQ+ ++ EI + ENI + + G+
Sbjct: 127 EVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSGI 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +VFTA GDMR +NNLQ+T++GF V+ + V KV D P P +K +L +CV+ N + +
Sbjct: 187 DTLVFTADGDMRIVINNLQATYHGFSMVSRDNVLKVSDIPSPEKIKSILDSCVKCNWRLA 246
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ I+ L+ GY+P DI+ + V K +PE L ++E+G H + +G + LQL
Sbjct: 247 HSIVEELFIGGYSPLDIVITMRNVLKKYQLPERAILEYLKEVGRCHFVMLDGCATPLQLD 306
Query: 301 GLLARLCIVGSK 312
LL +LC++ ++
Sbjct: 307 KLLGQLCMISAR 318
>gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 339
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 228/312 (73%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VGNE+ + RLKV + GN+PN+++SGPPG GKTT+I CLA +LG +
Sbjct: 19 IEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKTTSIHCLASEMLGSKY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
AVLELNAS+DRGID VR+KIK FA++K+ LP GRHKIVILDE DSMTD AQQALRR M
Sbjct: 79 GRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQALRRLM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS +TRFALACN S KIIEPIQSRCA++RY+KLTDAQ+ ++ EI + ENI + + G+
Sbjct: 139 EVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSGI 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +VFTA GDMR +NNLQ+T++GF V+ + V KV D P P +K +L +CV+ N + +
Sbjct: 199 DTLVFTADGDMRIVINNLQATYHGFSMVSRDNVLKVSDIPSPEKIKSILDSCVKCNWRLA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ I+ L+ GY+P DI+ + V K +PE L ++E+G H + +G + LQL
Sbjct: 259 HSIVEELFIGGYSPLDIVITMRNVLKRYQLPERAILEYLKEVGRCHFVMLDGCATPLQLD 318
Query: 301 GLLARLCIVGSK 312
LL +LC++ ++
Sbjct: 319 KLLGQLCMISAR 330
>gi|428671876|gb|EKX72791.1| replication factor C subunit 4, putative [Babesia equi]
Length = 324
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 162/310 (52%), Positives = 228/310 (73%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP + +I+GN + +RL+ + GN+PN+++ GPPG GKTT++LCLAR +LG F
Sbjct: 9 IEKYRPGSLDEIIGNPEITKRLQYIAKEGNMPNLLLCGPPGTGKTTSVLCLAREMLGAQF 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K V+ELNAS+DRG+D VR IK FA++ + LPP +HKIVILDE DSMT+ AQQALRR M
Sbjct: 69 KSGVIELNASDDRGVDVVRESIKNFAKKSLILPPNKHKIVILDEVDSMTEAAQQALRRIM 128
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA++R+ KL D Q+L ++++IC+ E++ +TNDG+
Sbjct: 129 EIYSNTTRFALACNQSTKIIEPIQSRCAVIRFTKLKDEQVLQRLMDICKLEDLKYTNDGM 188
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++F+A GD+R+A+NNLQ+ GF +T E VFKVCD P P +++ML +C+ GN + +
Sbjct: 189 EALLFSADGDLRRAVNNLQNVSAGFDLITKENVFKVCDIPSPDLIQKMLSDCLNGNWRMA 248
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ L +LG++P DII + V K+ + PE + L I+ + H+ + G+ + LQL
Sbjct: 249 HEKAAELLELGHSPLDIIITMRSVLKSFNAPEHVLLEYIKGVALTHMTMVNGLITQLQLE 308
Query: 301 GLLARLCIVG 310
LLA LC +
Sbjct: 309 KLLANLCRIA 318
>gi|258569615|ref|XP_002543611.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
gi|237903881|gb|EEP78282.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
Length = 278
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 153/248 (61%), Positives = 204/248 (82%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG ++
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDAY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLPPG+HK+VILDEADSMT GAQQALRRTM
Sbjct: 91 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSGAQQALRRTM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTD Q++ ++ +IC+ E++ H++DG+
Sbjct: 151 EIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDTQIVERLDQICKAEDVKHSDDGI 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG ++ + VF+V D PHP+ V+ M+ C EG + +
Sbjct: 211 AALVFSAEGDMRQAINNLQSTWAGFGFISGDNVFRVVDSPHPVKVQAMIKACYEGKVDSA 270
Query: 241 YKIIHHLY 248
+ L+
Sbjct: 271 LNTLTELW 278
>gi|399216114|emb|CCF72802.1| unnamed protein product [Babesia microti strain RI]
Length = 325
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/314 (52%), Positives = 224/314 (71%), Gaps = 15/314 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIIS---------------GPPGVGKT 45
IEKYRP T S+IVGN++ +RLK + GN+PN++I+ GPPG GKT
Sbjct: 11 IEKYRPTTLSEIVGNKEVTKRLKFIAKDGNMPNMLIAVGTKLICRINDKLIHGPPGTGKT 70
Query: 46 TTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEA 105
T+ILCLA +LGP K AVLELNAS+DRG+D VR+KIK FA++ TLP +HKIVILDE
Sbjct: 71 TSILCLANEMLGPMAKKAVLELNASDDRGVDVVRDKIKTFAKESTTLPKNKHKIVILDEV 130
Query: 106 DSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVI 165
DSMT+ AQQ+LRR MEIYS+TTRFALACN S K+IEPIQSRCA++RY+KL + +L ++I
Sbjct: 131 DSMTEAAQQSLRRIMEIYSDTTRFALACNQSTKVIEPIQSRCAIIRYSKLDNEHMLKRLI 190
Query: 166 EICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAV 225
EICE E +S+T DG+EA++F + GD+R+ALNNLQ+ GF +V E VFKVCD P P +
Sbjct: 191 EICELEKVSYTQDGMEALLFVSDGDLRRALNNLQNVSAGFRNVNKENVFKVCDVPSPEKL 250
Query: 226 KEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNV 285
++L NC+ G + ++ I+H L K G++ DI+ I + KT PE + L I+ +
Sbjct: 251 NDLLTNCLNGKWRPAHNILHELLKCGHSSIDIVVTIRNLLKTFKAPEHVLLEFIKAVAIT 310
Query: 286 HLRISEGVNSLLQL 299
H+ IS G++++LQL
Sbjct: 311 HMIISNGLSTVLQL 324
>gi|422294054|gb|EKU21354.1| replication factor C subunit 2/4 [Nannochloropsis gaditana CCMP526]
Length = 456
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 184/418 (44%), Positives = 256/418 (61%), Gaps = 103/418 (24%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPP-------------------- 40
+EKYRP T +D+VGN + ++RLKV + GN+P+++++GPP
Sbjct: 29 VEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPVRLVARITTFSSSSHILSAS 88
Query: 41 -----GVGKTTTILCLARILLG----------------------PSFK------------ 61
G GKT++I+CL+R LLG P+F
Sbjct: 89 LPPLQGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTPAFPFSFVLPLAISTG 148
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
AVLELNAS++RGID +R++IKMFAQ+KV LPPGRHK+VILDEADSMT AQQALRRTME
Sbjct: 149 AAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTME 208
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTD------------------------ 157
IYS+TTRFALACN S KIIEPIQSRCA+LR+++L D
Sbjct: 209 IYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEILSLPVSLVKSSARTSRGKRVDS 268
Query: 158 ------------------AQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199
++L ++ +ICE E++ ++DGLEA++FTA+GDMR A+NNLQ
Sbjct: 269 LPSRSSPAFPASPSPSIAQEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQ 328
Query: 200 STHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKDSYKIIHHLYKLGYAPEDII 258
ST++GFG+V VFKVCD+PHPL +KE+L C G++K + + + ++ LGY+ DI+
Sbjct: 329 STYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIV 388
Query: 259 GNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKNKK 315
G +F+V + + E KL+ I+EIG VH+RI+EG+NS Q+ GLLA+LC + K ++
Sbjct: 389 GTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQ 446
>gi|303322344|ref|XP_003071165.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240110864|gb|EER29020.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 283
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 156/253 (61%), Positives = 205/253 (81%), Gaps = 5/253 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG +
Sbjct: 31 VEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDVY 90
Query: 61 KDAVLELNASNDR-----GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 115
K+AVLELNAS++R GID VRN+IK FAQ+KVTLPPG+HK+VILDEADSMT GAQQA
Sbjct: 91 KEAVLELNASDERVRFLAGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSGAQQA 150
Query: 116 LRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISH 175
LRRTMEIYS TTRFA ACN S KIIEP+QSRCA+LRY++LTDAQ++ ++++ICE E++ H
Sbjct: 151 LRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQIVKRLMQICEAEDVKH 210
Query: 176 TNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
++DG+ A+VF+A+GDMRQA+NNLQST GFG V+ + VF+V D PHP+ V+ M+ C EG
Sbjct: 211 SDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACYEG 270
Query: 236 NMKDSYKIIHHLY 248
+ + + L+
Sbjct: 271 KVDSALDTLTELW 283
>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 333
Score = 346 bits (887), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 156/246 (63%), Positives = 201/246 (81%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+VGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR LLG S+
Sbjct: 36 VEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDSY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GRHK+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTDAQ++ ++++I E E + ++ DGL
Sbjct: 156 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEKVEYSEDGL 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A+VF+A+GDMRQA+NNLQST GFG V + VFKV D PHP+ V+ M+ C EG + +
Sbjct: 216 AALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAMIKACYEGKIDSA 275
Query: 241 YKIIHH 246
+ ++
Sbjct: 276 LETLNE 281
>gi|294893510|ref|XP_002774508.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239879901|gb|EER06324.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 514
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 166/306 (54%), Positives = 226/306 (73%), Gaps = 6/306 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + SD+VGNE ++RL+ + ++PN+++SGPPG GKTT+++CLAR LLG
Sbjct: 18 VEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLGEDL 77
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALR 117
K AVLELNAS+DRGID VRN+IK FAQQK++LP G + KIVILDEADSMT+ AQQA+R
Sbjct: 78 VKTAVLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQAMR 137
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTMEI+S TTRFALACN S KIIEPIQSRCA++R+++L D+ + ++V ++ + E +
Sbjct: 138 RTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADMEGVQLRG 197
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
DGLEA++FTA+GDMR ALNNLQST GFG VT E VFKVCD+P P +K+ L+CV +
Sbjct: 198 DGLEALIFTAEGDMRAALNNLQSTATGFGVVTRENVFKVCDQPQPGELKQATLDCVNNDW 257
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---DIPEPLKLSIIQEIGNVHLRISEGVN 294
++ + + GY+ DI+G + RV + L ++ E +K+ +Q I LR+SEG+
Sbjct: 258 CSAFDRLDKITAQGYSIGDIVGTLERVIRNLPPEELNEAIKIEFLQAIAMCRLRMSEGLQ 317
Query: 295 SLLQLS 300
S +QLS
Sbjct: 318 SRVQLS 323
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 158/299 (52%), Positives = 221/299 (73%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP D++GN + RL+V + GN+PN+++ GPPG GKTT+ILCLA +LG F
Sbjct: 7 IEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEMLGNHF 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRG+D VR IK FA++ V LPP +HKI+ILDE DSMT+ AQQALRR M
Sbjct: 67 KNAVLELNASDDRGVDVVRGAIKNFAKKSVVLPPNKHKIIILDEVDSMTEAAQQALRRIM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S KIIEPIQSRCA++RY L D +L+++I IC++EN+ +TNDG+
Sbjct: 127 EIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHICKEENVQYTNDGM 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTA GDMR+A+NNLQ+ +G+ +T++ V+KVCD P P ++++L +C++G + +
Sbjct: 187 EALLFTANGDMRRAVNNLQNVSSGYNLITSQNVYKVCDVPSPELIRKLLQDCLDGQWRPA 246
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L LG++P DI+ + V KTL PE + ++ I H+ + G++S LQL
Sbjct: 247 HEKAEDLLALGHSPFDILMTVRSVLKTLKAPEHILCEFLKTISLSHMTMISGLSSPLQL 305
>gi|343418636|emb|CCD19659.1| replication factor C, subunit 4, putative [Trypanosoma vivax Y486]
Length = 339
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/330 (51%), Positives = 236/330 (71%), Gaps = 19/330 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--- 57
+EKYRP + +D+VGN D V RL+V + GN+PN+++ GPPG GKTT++LCLAR LL
Sbjct: 9 VEKYRPVSLADVVGNADAVARLRVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLSGQD 68
Query: 58 ----PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR----------HKIVILD 103
+ K+AVLELNAS DRG+D VR KIK+FAQ K TL HKIVILD
Sbjct: 69 VTPNSALKEAVLELNASYDRGLDVVREKIKLFAQTKKTLLQKMDVTDQRRINLHKIVILD 128
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT +Q+ALRRT+E++S TTRFA ACNNS KIIEPIQSRCA++R+ KLT +L +
Sbjct: 129 EADSMTPASQRALRRTIELHSGTTRFAFACNNSHKIIEPIQSRCAVVRFWKLTHGDILKR 188
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
++ I ++EN+++T+DGLEA+++ A GD+R A+N LQ+T +G+G V A+ VFKVCD+PHPL
Sbjct: 189 LMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVVNAKNVFKVCDQPHPL 248
Query: 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT--LDIPEPLKLSIIQE 281
V+ ++ +C++ ++ ++K + L GYA D+I FRVA+ L E L+L+++Q
Sbjct: 249 LVESIMSSCLKHDLAAAHKEMQRLLGRGYAMSDVISTFFRVAQNPGLFRDEQLQLAVLQI 308
Query: 282 IGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
IG +RI+EGV S LQL+ +LAR+ + S
Sbjct: 309 IGETTMRIAEGVGSPLQLAAMLARILVATS 338
>gi|340059150|emb|CCC53532.1| putative replication factor C, subunit 4 [Trypanosoma vivax Y486]
Length = 339
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/330 (50%), Positives = 234/330 (70%), Gaps = 19/330 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--- 57
+EKYRP + +D+VGN D V RL V + GN+PN+++ GPPG GKTT++LCLAR LL
Sbjct: 9 VEKYRPVSLADVVGNADAVVRLHVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLSDQD 68
Query: 58 ----PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR----------HKIVILD 103
+ K+AVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVILD
Sbjct: 69 GASNSALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKMDVTDQRRINLHKIVILD 128
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT AQQALRRT+E++S TRFA ACNNS KIIEPIQSRCA++R+ KLT +L +
Sbjct: 129 EADSMTPAAQQALRRTIELHSGATRFAFACNNSHKIIEPIQSRCAVVRFRKLTHGDILKR 188
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
++ I ++EN+++T+DGLEA+++ A GD+R A+N LQ+T +G+G V AE VFKVCD+PH L
Sbjct: 189 LMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVVNAENVFKVCDQPHAL 248
Query: 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT--LDIPEPLKLSIIQE 281
V+ ++ +C++ ++ ++K + L GYA D+I FRVA+ L + L+L+++Q
Sbjct: 249 LVESIMSSCLKHDLAAAHKEMQRLLGRGYAVSDVISTFFRVAQNPKLFLDLQLQLAVLQI 308
Query: 282 IGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
IG +R++EGV S LQL+ +L R+ + S
Sbjct: 309 IGETTMRVAEGVGSPLQLASMLDRILVATS 338
>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
Length = 264
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 162/252 (64%), Positives = 207/252 (82%), Gaps = 4/252 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLG 251
+I+ L+K G
Sbjct: 249 IQILRTDLWKKG 260
>gi|71756209|ref|XP_829019.1| replication factor C subunit 4 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834405|gb|EAN79907.1| replication factor C, subunit 4, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334959|emb|CBH17953.1| replication factor C, subunit 4, putative [Trypanosoma brucei
gambiense DAL972]
Length = 341
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/334 (50%), Positives = 236/334 (70%), Gaps = 22/334 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-- 58
+EKYRP + DIVGN D V RL+V + GN+PN+++ GPPG GKTT++LCLAR LL
Sbjct: 9 VEKYRPMSMEDIVGNADAVARLQVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLSDPD 68
Query: 59 -------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP----------GRHKIVI 101
+ KDAVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVI
Sbjct: 69 GGGSNNNALKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPQRVGDSNNRKINLHKIVI 128
Query: 102 LDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161
LDEADSMT AQQALRRT+E++S+TTRFA ACNNS KIIEPIQSRCA++R+ KL+ +L
Sbjct: 129 LDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFRKLSHTDIL 188
Query: 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPH 221
+++ I ++EN+++T+DGLEA+++ A GD+R A+N LQ+T +G+ V A+ VFKVCD PH
Sbjct: 189 RRLMYIIQQENVAYTDDGLEALLYLADGDLRSAVNALQATCSGYSLVNADNVFKVCDLPH 248
Query: 222 PLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI--PEPLKLSII 279
P V+ +L +CV+ ++ ++K + L GYA D+I FR A+ + + E +L ++
Sbjct: 249 PQLVEAILTSCVKQDLAAAHKEMQRLLGRGYATSDVISTFFRAAQNVKLFRDEKQQLQVL 308
Query: 280 QEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKN 313
+ IG V +R++EGV + LQL+ ++ R+ IV +K+
Sbjct: 309 RIIGEVTMRVAEGVGTPLQLASMVCRI-IVATKS 341
>gi|342186045|emb|CCC95530.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 341
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 169/334 (50%), Positives = 236/334 (70%), Gaps = 22/334 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-- 58
+EKYRP + DIVGN D V RL+V + GN+PN+++ GPPG GKTT++LCLAR LL
Sbjct: 9 VEKYRPISMDDIVGNADAVARLQVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLSDSE 68
Query: 59 -------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP----------GRHKIVI 101
+ K+AVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVI
Sbjct: 69 GGGSSSNALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVDDSGNRKINLHKIVI 128
Query: 102 LDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161
LDEADSMT AQQALRRT+E++S+TTRFA ACNNS KIIEPIQSRCA++R+ KL+ A +L
Sbjct: 129 LDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLSHADIL 188
Query: 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPH 221
+++ I +EN+++T DGLEA+++ A+GD+R A+N LQ+T +G+ V A+ VFKVCD PH
Sbjct: 189 KRLMHIIREENVTYTEDGLEALLYLAEGDLRSAVNALQATCSGYSVVNADNVFKVCDLPH 248
Query: 222 PLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI--PEPLKLSII 279
P V+ +L +C++ ++ +++K + L GYA D+I FR A+ + + E +L ++
Sbjct: 249 PHLVEGILTSCLKQDLAEAHKEMQRLLGRGYATSDVISTFFRAAQNVKLFRDEKQQLEVL 308
Query: 280 QEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKN 313
+ IG V +RI+EGV + LQL+ +L R+ IV +K
Sbjct: 309 RIIGEVTMRIAEGVGTPLQLASMLCRI-IVATKT 341
>gi|340059147|emb|CCC53529.1| putative replication factor C, subunit 4 [Trypanosoma vivax Y486]
Length = 339
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/330 (51%), Positives = 232/330 (70%), Gaps = 19/330 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--- 57
+ KYRP + +D+VGN D V RL V + GN+PN + G G GKTT++LCLAR LL
Sbjct: 9 VGKYRPVSLADVVGNADAVARLHVIARKGNLPNHLHCGTRGTGKTTSMLCLARSLLSDQD 68
Query: 58 ----PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR----------HKIVILD 103
+ K+AVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVILD
Sbjct: 69 GASNSALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKMDVTDQRRINLHKIVILD 128
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT AQQALRRT+E++S TTRFA ACNNS KIIEPIQSRCA++R+ KLT +L +
Sbjct: 129 EADSMTPAAQQALRRTIELHSGTTRFAFACNNSHKIIEPIQSRCAVVRFRKLTHGDILKR 188
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
++ I ++EN+++T+DGLEA+++ A GD+R A+N LQ+T +G+G V AE VFKVCD+PHPL
Sbjct: 189 LMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVVNAENVFKVCDQPHPL 248
Query: 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT--LDIPEPLKLSIIQE 281
V+ ++ +C++ ++ ++K + L GYA D+I FRVA+ L E L+L+++Q
Sbjct: 249 LVESIMSSCLKHDLAAAHKEMQRLLGRGYAVSDVISTFFRVAQNPKLFRDEQLQLAVLQI 308
Query: 282 IGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
IG +RI+EGV S LQL+ +LAR+ + S
Sbjct: 309 IGETTMRIAEGVGSPLQLAAMLARILVSTS 338
>gi|401400278|ref|XP_003880754.1| putative replication factor c subunit [Neospora caninum Liverpool]
gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool]
Length = 347
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 158/312 (50%), Positives = 219/312 (70%), Gaps = 2/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+T D+VGN+ + RL++ + GN+P+++++GPPG GKT+++LCL + LLG +
Sbjct: 31 IEKYRPETLDDVVGNDQVMRRLRIIAKEGNMPHLMLAGPPGTGKTSSVLCLCKQLLGSRW 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++R ID +R K+K FA++K LPPGRHKIVILDE D+MT+ AQQALRR M
Sbjct: 91 RACTLELNASDERTIDVIREKVKHFAKEKRDLPPGRHKIVILDEVDAMTEAAQQALRRIM 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+TTRFALACN+S +IEP+QSRCA+LR+ KL DAQL+ ++ ++C E + T+DG+
Sbjct: 151 EQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDAQLVRRLRQVCSMEAVQVTDDGM 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVF A GDMR ALNNLQST + FG V E V KVCD P P AV+ MLL C+ G + +
Sbjct: 211 EAIVFCADGDMRSALNNLQSTVSAFGIVNRENVEKVCDNPPPEAVRAMLLECLAGKWRAA 270
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD--IPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ I L GY P D++ V D E + L ++ +G H+ ++ G+++ LQ
Sbjct: 271 HDIATELLHRGYTPMDVVLTTRSVLSRFDNECKEHILLEYLKYVGLTHMTMASGLSTPLQ 330
Query: 299 LSGLLARLCIVG 310
L +LA LC V
Sbjct: 331 LDKMLANLCRVS 342
>gi|345560703|gb|EGX43828.1| hypothetical protein AOL_s00215g564 [Arthrobotrys oligospora ATCC
24927]
Length = 306
Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 214/313 (68%), Gaps = 37/313 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +IVGN +TVERLK+ + GN+P++IISG
Sbjct: 28 VEKYRPRFLDEIVGNTETVERLKIIAKDGNMPHVIISG---------------------- 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
ID VRN+IK FAQ+KVTLPPGR KIVILDEADSMT GAQQALRRTM
Sbjct: 66 --------------IDVVRNRIKGFAQKKVTLPPGRQKIVILDEADSMTSGAQQALRRTM 111
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFA ACN S KIIEP+QSRCA+LRY +LTD QLL +++EIC E++ ++++GL
Sbjct: 112 EIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDQQLLKRLMEICAAEDVKYSDEGL 171
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++F+A+GDMRQA+NNLQST GFG V + VFKV D PHP+AV+ M+ C EG + +
Sbjct: 172 AALIFSAEGDMRQAVNNLQSTVAGFGFVNGDNVFKVVDSPHPVAVQAMIKACYEGKIDQA 231
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L+ GY+ D+I +FRV KT+D + E KL I+EIG H+RI EGV + LQL
Sbjct: 232 LETLRELWDKGYSAVDLISTMFRVTKTIDTLSEHSKLEFIKEIGFTHMRILEGVGTHLQL 291
Query: 300 SGLLARLCIVGSK 312
G +ARLC + K
Sbjct: 292 QGCIARLCRINMK 304
>gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara]
gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata]
Length = 299
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 154/280 (55%), Positives = 215/280 (76%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP T +I+GN + +RL+ + GN+PN+++ GPPG GKTT++LCLAR +LG F
Sbjct: 9 IEKYRPSTLEEIIGNPEITKRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAREMLGSHF 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AV+ELNAS+DRG+D VR IK FA++ + LP +HKIVILDE DSMT+ AQQALRR M
Sbjct: 69 KSAVVELNASDDRGVDVVRENIKNFAKKSLILPANKHKIVILDEVDSMTEPAQQALRRIM 128
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN S KIIEPIQSRCA++RY+KL D Q+L +++ IC+ EN+++T++G+
Sbjct: 129 EIYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLKDEQILKRLVTICDLENLTYTDEGM 188
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++F+A GD+R+A+NNLQ GF VT + VFKVCD P P +++ML NC+ GN + +
Sbjct: 189 EALLFSADGDLRRAVNNLQIVSAGFKIVTKDNVFKVCDIPSPDLIQKMLENCLNGNWRLA 248
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQ 280
++ ++ L +LG++P DII + + KT+D PE + L I+
Sbjct: 249 HEKVNQLLELGHSPVDIIVTMRSLLKTMDAPEHVLLEYIK 288
>gi|118386221|ref|XP_001026231.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89307998|gb|EAS05986.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 321
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 226/314 (71%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ GNED + +L+ + GNVPN+I+ GPPG+GKT+++LCLAR LL F
Sbjct: 8 LEKYRPRTLDEVQGNEDALIKLRTIAEEGNVPNMILVGPPGIGKTSSVLCLARTLLADVF 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LE+NAS++RGID VR KIK FAQ+KV L PG HKI+ILDEADS+T+GAQQALR +
Sbjct: 68 DSCALEMNASDERGIDVVREKIKSFAQKKVNLKPGLHKIIILDEADSLTEGAQQALRMII 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+++TTRF L+CN+S K+I+ IQSRCA+LR+ KLTD Q+L ++ EI EKENI G
Sbjct: 128 SDFADTTRFVLSCNDSSKLIDAIQSRCAILRFTKLTDEQILRRLEEIVEKENIKIDKGGK 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FT +GDMRQA+NNLQ+T+ F V E V KVCD P+ +++++ CV GN +
Sbjct: 188 EALLFTCEGDMRQAINNLQATYTAFKLVNKENVLKVCDVPNVEVLQQVIAECVNGNFHAA 247
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
K ++ L++ GY D++ N++++ +T D+ + L+ ++E+ + +++ EG+ + LQ+S
Sbjct: 248 QKKLYPLWEEGYTAYDLVNNLYKLIQTQDMDKQLQYEFMREMAFLKMKVLEGLPTFLQIS 307
Query: 301 GLLARLCIVGSKNK 314
G LA++ + + K
Sbjct: 308 GYLAKISSIANSKK 321
>gi|340508857|gb|EGR34473.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 322
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 226/316 (71%), Gaps = 2/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T DI GNED + +L+ S GN+PN+I+ GPPG+GKT+++LCLA+ LLG
Sbjct: 7 LEKYRPKTLEDIQGNEDALIKLRTISKEGNIPNMILVGPPGIGKTSSVLCLAKTLLGDLI 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LELNAS++RGID VR+KIK FAQ+K L PG HKI+ILDEADS+T+GAQQALR +
Sbjct: 67 SSCCLELNASDERGIDVVRDKIKSFAQKKANLRPGLHKIIILDEADSLTEGAQQALRMII 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
Y++TTRF L+CN+S K+I+ IQSRCA+LR+ KL DAQ+L+++ EI + ENI GL
Sbjct: 127 SDYADTTRFMLSCNDSSKLIDAIQSRCAILRFTKLNDAQVLNRIQEIIKLENIPFDKSGL 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FT +GDMRQA+NNLQ+T FG + E VFKVCD P+ +++ LL C GN +
Sbjct: 187 EALLFTTEGDMRQAINNLQATFTAFGFLNRENVFKVCDVPNIEMLQQALLECSNGNFHSA 246
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ L++ GY D++ N++++ L I + L+ ++E+ + +++ EG+ + +Q+S
Sbjct: 247 QLKVYPLWEEGYTAYDLVNNLYKLVFNLPIEKNLQYEFLREMAFLKMKVLEGLPTFVQIS 306
Query: 301 GLLARLCIVGS--KNK 314
G LA++ + + KNK
Sbjct: 307 GYLAKISQIANNMKNK 322
>gi|403368050|gb|EJY83856.1| ATPase involved in DNA replication [Oxytricha trifallax]
Length = 328
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/309 (50%), Positives = 219/309 (70%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+VGN+ +++LK GN+PN+I+ GPPG GKT++++C+AR +L
Sbjct: 10 VEKYRPETLDDVVGNKFAIDQLKAIVKFGNMPNLILVGPPGTGKTSSVMCMARQMLKECV 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K LELNAS+DRGID VR+KIK FA QKVT+PPG HK++ILDE D+MT+ AQQALR M
Sbjct: 70 KTGTLELNASDDRGIDVVRDKIKGFAHQKVTVPPGMHKLIILDEGDAMTESAQQALRMIM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
YS+TTRFA+ACN+S KIIEPIQSRCA++R+ KL D +++ ++ + ++E I +T DG+
Sbjct: 130 TEYSSTTRFAIACNDSAKIIEPIQSRCAIVRFTKLNDEEIVERLQIVMDREQIEYTPDGI 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+VFTA GDMR ALNNLQ+T GF V E VFKVCD+PHP + +L C+ ++
Sbjct: 190 EALVFTADGDMRYALNNLQATFAGFSVVNKENVFKVCDQPHPDLMANVLRACLHARFTEA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DI-PEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I ++ GY DII + ++ + + DI E ++L+ ++E + +R EG NS LQ
Sbjct: 250 CALIDTVFNEGYNLIDIINTLTKIMQNMQDIRSEEMRLNYLKEASIIKMRTLEGNNSQLQ 309
Query: 299 LSGLLARLC 307
L G LA LC
Sbjct: 310 LHGFLANLC 318
>gi|6644334|gb|AAF21015.1|AF208499_1 replication factor C subunit 2, partial [Rattus norvegicus]
Length = 216
Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 148/207 (71%), Positives = 180/207 (86%)
Query: 101 ILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160
ILDEADSMTDGAQQALRRTMEIYS TTRFALACN S+KIIEPIQSRC LRY KLTDAQ+
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCGWLRYTKLTDAQV 60
Query: 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEP 220
LS+++ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEP
Sbjct: 61 LSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEP 120
Query: 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQ 280
HPL VKEM+ +CV+ N+ ++YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+
Sbjct: 121 HPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIK 180
Query: 281 EIGNVHLRISEGVNSLLQLSGLLARLC 307
EIG H++++EGVNSLLQ++GLLARLC
Sbjct: 181 EIGYTHMKVAEGVNSLLQMAGLLARLC 207
>gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
Length = 336
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/301 (49%), Positives = 214/301 (71%), Gaps = 2/301 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+T D+VGN+ + RL++ + GN+P+++++GPPG GKT+++LCL + LLG +
Sbjct: 35 IEKYRPETLDDVVGNDQVMRRLRIIAREGNMPHLMLAGPPGTGKTSSVLCLCKQLLGSRW 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++R ID +R K+K FA++K LP GRHKIVILDE D+MT+ AQQALRR M
Sbjct: 95 RAYTLELNASDERTIDVIREKVKHFAKEKRDLPAGRHKIVILDEVDAMTEAAQQALRRIM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+TTRFALACN+S +IEP+QSRCA+LR+ KL D+QL+ ++ ++C E + T+DG+
Sbjct: 155 EQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDSQLVRRLRQVCAMEALQVTDDGI 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVF A GDMR ALNNLQST + FG V E V KVCD P P AV+ ML+ C+ G +++
Sbjct: 215 EAIVFCADGDMRSALNNLQSTVSAFGVVNRENVEKVCDNPPPEAVRSMLMECLAGKWREA 274
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL--DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ I L + GY P D++ V + E + L ++ +G H+ +S G+++ LQ
Sbjct: 275 HDIAAELLRRGYTPMDVVLTTRSVLSRFENECKEHILLEYLKYVGLAHMTMSAGLSTPLQ 334
Query: 299 L 299
L
Sbjct: 335 L 335
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 150/307 (48%), Positives = 218/307 (71%), Gaps = 1/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN +ERL+ ++ GN+PN+I++GPPG GKTT++L L LLG
Sbjct: 8 VEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCHQLLGDKE 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAV+ELNAS+DRGID VR IK FA++ V LP GRHK+V+LDE+DSMTD AQQA+RR M
Sbjct: 68 KDAVIELNASDDRGIDVVRKNIKEFAKRHVALPEGRHKVVLLDESDSMTDAAQQAMRRIM 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TTRF ACN SEK+IEPIQSRCA++R++++ + ++ +++++ICE E ++G+
Sbjct: 128 ENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLMKICELEGFKPESEGI 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ A GDMR A+N LQST+ +G VT E V D P+P A+ ++ N +++
Sbjct: 188 ATLARLADGDMRTAINGLQSTYVRYGLVTQENVLATVDIPNPTAIADIFTALSTDNFRNA 247
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I++ L K G++P DI+ ++F + D I E LKL++++EIG +R+S+G++S LQL
Sbjct: 248 LIILNGLEKRGHSPSDIVKSLFSFVRRTDTIQEKLKLNLLKEIGLAQMRVSQGMSSNLQL 307
Query: 300 SGLLARL 306
GLLA L
Sbjct: 308 DGLLATL 314
>gi|70952026|ref|XP_745209.1| replication factor c subunit 4 [Plasmodium chabaudi chabaudi]
gi|56525460|emb|CAH78469.1| replication factor c subunit 4, putative [Plasmodium chabaudi
chabaudi]
Length = 336
Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 219/312 (70%), Gaps = 3/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VGN + LK SGN+PN++++G PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGSQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPGRHKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEVISLPPGRHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KLTD Q+L ++++ICE ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLTDDQVLKRILKICEYENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E I F A GD+R+A+N LQST+ G + E V +CD P P ++ +L +C+ + +
Sbjct: 199 ETITFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERIENLLKHCISSEWRKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLR-ISEGVNSLLQ 298
+ I + + K G+ P D+ V + D+ E +++ ++ IG + ++ G++S++Q
Sbjct: 259 HDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAIQIEFLK-IGAMACNTMASGLSSVIQ 317
Query: 299 LSGLLARLCIVG 310
L L+A CI
Sbjct: 318 LDKLIADWCIAA 329
>gi|358340400|dbj|GAA48300.1| replication factor C subunit 2, partial [Clonorchis sinensis]
Length = 965
Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 147/197 (74%), Positives = 172/197 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DIVGNE T+ RL FS GNVPNIII+GPPG GKTT+ILCLA L+G S+
Sbjct: 114 VEKYRPVVLTDIVGNEATILRLTAFSREGNVPNIIIAGPPGCGKTTSILCLAHALIGSSY 173
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASNDRGID VRNKIKMFAQ+KVTLPPGR KI+ILDEADSMT+GAQQALRRTM
Sbjct: 174 KEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRQKIIILDEADSMTEGAQQALRRTM 233
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN+S K+IEPIQSRCA+LRY +LT AQ+++++IE+C EN+S+T++GL
Sbjct: 234 EIYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTAAQIMARLIEVCRAENVSYTDEGL 293
Query: 181 EAIVFTAQGDMRQALNN 197
EAIVFTA GDMRQ N
Sbjct: 294 EAIVFTADGDMRQVYAN 310
>gi|221053736|ref|XP_002258242.1| replication factor c subunit [Plasmodium knowlesi strain H]
gi|193808075|emb|CAQ38779.1| replication factor c subunit, putative [Plasmodium knowlesi strain
H]
Length = 339
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 218/312 (69%), Gaps = 3/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VGN + LK SGN+PN++++G PG GKTT+ILCLA +LGP
Sbjct: 19 IEKYRPENLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGPQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KL+D Q+L ++++ICE ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICEMENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E + F A GD+R+A+N LQST+ G + E V +CD P P ++ +L C+ K +
Sbjct: 199 ETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKFCINSEWKKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLR-ISEGVNSLLQ 298
+ I + + K G+ P D+ V + D+ E +++ ++ IG + ++ G+ S++Q
Sbjct: 259 HDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSESVQIEFLK-IGAMACNTMASGLASVIQ 317
Query: 299 LSGLLARLCIVG 310
L LLA CI
Sbjct: 318 LDRLLADWCIAA 329
>gi|221059105|ref|XP_002260198.1| replication factor c subunit [Plasmodium knowlesi strain H]
gi|221061841|ref|XP_002262490.1| replication factor c subunit 4 [Plasmodium knowlesi strain H]
gi|193810271|emb|CAQ41465.1| replication factor c subunit, putative [Plasmodium knowlesi strain
H]
gi|193811640|emb|CAQ42368.1| replication factor c subunit 4, putative [Plasmodium knowlesi
strain H]
Length = 339
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 218/312 (69%), Gaps = 3/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VGN + LK SGN+PN++++G PG GKTT+ILCLA +LGP
Sbjct: 19 IEKYRPENLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGPQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KL+D Q+L ++++IC+ ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICQMENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E + F A GD+R+A+N LQST+ G + E V +CD P P ++ +L C+ K +
Sbjct: 199 ETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKFCINSEWKKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLR-ISEGVNSLLQ 298
+ I + + K G+ P D+ V + D+ E +++ ++ IG + ++ G+ S++Q
Sbjct: 259 HDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSESVQIEFLK-IGAMACNTMASGLASVIQ 317
Query: 299 LSGLLARLCIVG 310
L LLA CI
Sbjct: 318 LDRLLADWCIAA 329
>gi|297680206|ref|XP_002817894.1| PREDICTED: replication factor C subunit 2 [Pongo abelii]
Length = 209
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 173/200 (86%)
Query: 108 MTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
MTDGAQQALRRTMEIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ +
Sbjct: 1 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 60
Query: 168 CEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKE 227
EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKE
Sbjct: 61 IEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKE 120
Query: 228 MLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
M+ +CV N+ ++YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H+
Sbjct: 121 MIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHM 180
Query: 288 RISEGVNSLLQLSGLLARLC 307
+I+EGVNSLLQ++GLLARLC
Sbjct: 181 KIAEGVNSLLQMAGLLARLC 200
>gi|68076857|ref|XP_680348.1| replication factor c subunit 4 [Plasmodium berghei strain ANKA]
gi|56501262|emb|CAH99168.1| replication factor c subunit 4, putative [Plasmodium berghei]
Length = 335
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 219/312 (70%), Gaps = 4/312 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VGN + LK SGN+PN++++G PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGSQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPGRHKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKE-ISLPPGRHKIIILDEVDSMTTAAQQSLRRIM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KLTD Q+L ++++ICE ENI +T+DGL
Sbjct: 138 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLTDDQVLKRILKICEYENIKYTDDGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E I F A GD+R+A+N LQST+ G V E V +CD P P ++ +L +C+ + +
Sbjct: 198 ETITFIADGDLRKAVNCLQSTYAGLEVVNKENVLNICDIPSPERIENLLKHCISSEWRKA 257
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLR-ISEGVNSLLQ 298
+ I + + K G+ P D+ V + D+ E +++ ++ IG + ++ G++S++Q
Sbjct: 258 HDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAIQIEFLK-IGAMACNTMASGLSSVIQ 316
Query: 299 LSGLLARLCIVG 310
+ L+A CI
Sbjct: 317 MDKLIADWCIAA 328
>gi|389586506|dbj|GAB69235.1| replication factor C subunit 4 [Plasmodium cynomolgi strain B]
Length = 336
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 217/312 (69%), Gaps = 3/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VGN + LK SGN+PN++++G PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPECLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGAQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KL+D Q+L ++++IC+ ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICQLENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E + F A GD+R+A+N LQST+ G + E V +CD P P ++ +L C+ K +
Sbjct: 199 ETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERIENLLKFCINSEWKKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLR-ISEGVNSLLQ 298
+ I + + K G+ P D+ V + D+ E +++ ++ IG + ++ G+ S++Q
Sbjct: 259 HDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAVQIEFLK-IGAMACNTMASGLASVIQ 317
Query: 299 LSGLLARLCIVG 310
L LLA CI
Sbjct: 318 LDKLLADWCIAA 329
>gi|156095817|ref|XP_001613943.1| replication factor C subunit 4 [Plasmodium vivax Sal-1]
gi|148802817|gb|EDL44216.1| replication factor C subunit 4, putative [Plasmodium vivax]
Length = 336
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 217/312 (69%), Gaps = 3/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VGN + LK SGN+PN++++G PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPEYLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGAQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KL+D Q+L ++++IC+ ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICQLENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E + F A GD+R+A+N LQST+ G + E V +CD P P ++ +L C+ K +
Sbjct: 199 ETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERIENLLKFCINSEWKKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLR-ISEGVNSLLQ 298
+ I + + + G+ P D+ V + D+ E +++ ++ IG + ++ G+ S++Q
Sbjct: 259 HDIAYDMIREGHTPFDVALTSSNVLRRYDLGSEAVQIEFLK-IGAMACNTMASGLASVIQ 317
Query: 299 LSGLLARLCIVG 310
L LLA CI
Sbjct: 318 LDKLLADWCIAA 329
>gi|124806707|ref|XP_001350805.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
gi|11559514|gb|AAG37992.1|AF126257_1 replication factor C subunit 4 [Plasmodium falciparum]
gi|23496934|gb|AAN36485.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
Length = 336
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 220/312 (70%), Gaps = 3/312 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VGN + LK +SGN+PN++++G PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KL+D Q+L ++++IC+ ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ F A GD+R+A+N LQST+ G + E V +CD P P ++ +L +CV K +
Sbjct: 199 DALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLR-ISEGVNSLLQ 298
+ I + + K G+ P DI V + +I E +++ ++ IG + ++ G+ S++Q
Sbjct: 259 HDIAYSMIKEGHTPYDISLTSSNVLRRFNIGSEVIQIEFLK-IGAMACNTMATGLTSVIQ 317
Query: 299 LSGLLARLCIVG 310
L LLA C+
Sbjct: 318 LDKLLADWCMAA 329
>gi|343412942|emb|CCD21495.1| replication factor C, subunit 4, putative [Trypanosoma vivax Y486]
Length = 307
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 151/284 (53%), Positives = 205/284 (72%), Gaps = 17/284 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL---- 56
+EKY P + +D+VGN D V RL+V + GN+PN+++ GPPG GKTT++LCLAR L
Sbjct: 9 VEKYLPVSLADVVGNADAVARLRVIAREGNLPNLLLCGPPGTGKTTSMLCLARSFLSNQE 68
Query: 57 GPS---FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR----------HKIVILD 103
G S K+AVLELNAS+DRG+D VR KIK+FAQ K TLP HKIVILD
Sbjct: 69 GASNYALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKMDVTDQRRINLHKIVILD 128
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EADSMT AQQALRRT+E++S TTRFA ACNNS KIIEPIQSRCA++R+ KLT +L +
Sbjct: 129 EADSMTPAAQQALRRTIELHSGTTRFAFACNNSHKIIEPIQSRCAVVRFRKLTHGDILRR 188
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
++ I ++EN+++T+DGLEA+++ A GD+R A+N LQ+T +G+G AE VFKVCD+PHPL
Sbjct: 189 LMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVANAENVFKVCDQPHPL 248
Query: 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT 267
V+ ++ + ++ ++ ++K + L GYA D+I FRV +T
Sbjct: 249 LVESIMSSRLKHDLAAAHKEMQRLLWRGYAVSDVISTFFRVDRT 292
>gi|145552042|ref|XP_001461697.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429533|emb|CAK94324.1| unnamed protein product [Paramecium tetraurelia]
Length = 384
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/297 (48%), Positives = 216/297 (72%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ GN D V++L+ + GN+PNII+ GPPG+GKT+++LCLAR +LG S
Sbjct: 8 LEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLARQILGDSI 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K++VLELNAS+DRGI+TVR +IK FAQ+KV L G+HKIVILDEADS+T+GAQQALR +
Sbjct: 68 KESVLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQALRMII 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
YS +TRF L+CN+S K+I+ IQSRC +LR+N+L + ++ +++EI +E++++T DGL
Sbjct: 128 SDYSTSTRFVLSCNDSTKLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYTKDGL 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ FTA+GDMRQA+NNLQ+T GFG V E VFKVCD P+ +K++L + ++G + +
Sbjct: 188 DALTFTAEGDMRQAINNLQATFTGFGLVNRENVFKVCDVPNVDDLKKILDHMLKGEFQPA 247
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ ++ GY DI +V + + L+ +++I + RI EG+ +L
Sbjct: 248 QSLMKSIFDNGYMAYDITNTFNKVIQNHNGDRDLQFEFLRQIAFLKARILEGIADVL 304
>gi|83032953|ref|XP_729265.1| replication factor C subunit 4 [Plasmodium yoelii yoelii 17XNL]
gi|23486553|gb|EAA20830.1| replication factor C subunit 4 [Plasmodium yoelii yoelii]
Length = 358
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 152/326 (46%), Positives = 219/326 (67%), Gaps = 17/326 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIIS--------------GPPGVGKTT 46
IEKYRP+ D+VGN + LK SGN+PN++++ G PG GKTT
Sbjct: 19 IEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAVKIIFSLLMNLFCCGAPGTGKTT 78
Query: 47 TILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEAD 106
+ILCLA +LG K AVLELNAS+DRGI+ +R++IK FA++ ++LPPGRHKI+ILDE D
Sbjct: 79 SILCLASEMLGSQAKKAVLELNASDDRGINVIRDRIKSFAKEVISLPPGRHKIIILDEVD 138
Query: 107 SMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIE 166
SMT AQQ+LRR ME+YS+TTRFALACN SEKII+ +QSRCA++RY KLTD Q+L ++++
Sbjct: 139 SMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLTDDQVLKRILK 198
Query: 167 ICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVK 226
ICE ENI +T+DGLE I F A GD+R+A+N LQST+ G + E V +CD P P ++
Sbjct: 199 ICEYENIKYTDDGLETITFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERIE 258
Query: 227 EMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNV 285
+L +C+ + ++ I + + K G+ P D+ V + D+ E +++ ++ IG +
Sbjct: 259 NLLKHCISSEWRKAHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAIQIEFLK-IGAM 317
Query: 286 HLR-ISEGVNSLLQLSGLLARLCIVG 310
++ G++S++QL L+A CI
Sbjct: 318 ACNTMASGLSSVIQLDKLIADWCIAA 343
>gi|225678578|gb|EEH16862.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 387
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 158/333 (47%), Positives = 215/333 (64%), Gaps = 49/333 (14%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT+ILCLAR +LG S+
Sbjct: 31 VEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDSY 90
Query: 61 KDAVLELNASNDR--------------------GIDTVRNKIKMFAQQKVTLPPGRHKIV 100
K+AVLELNAS++R GID VRN+IK FAQ+KVTLPPGRHK+V
Sbjct: 91 KEAVLELNASDERGMATPIFLSSVERTLTYLLAGIDVVRNRIKGFAQKKVTLPPGRHKLV 150
Query: 101 ILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160
ILDEADSMT GA + + + I +P S +L
Sbjct: 151 ILDEADSMTSGASKP----------------SGEHGGYIPQPPAS------------IRL 182
Query: 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEP 220
S++ +IC+ EN+ H+ DG+ A++F+A+GDMRQA+NNLQST GFG V+ + VF+V D P
Sbjct: 183 QSRLTQICQAENVKHSEDGIAALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSP 242
Query: 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSII 279
HP+ V+ M+ C EGN+ + ++ L+ LGY+ DII +FRV KT+ + E KL I
Sbjct: 243 HPIKVQAMIKACWEGNIDAALDTLNELWDLGYSSHDIISTMFRVTKTIPTLSEHAKLEFI 302
Query: 280 QEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
+EIG H+RI EGV +L+QLSG +A+LC + K
Sbjct: 303 KEIGFAHMRILEGVQTLVQLSGCVAKLCRINMK 335
>gi|432115451|gb|ELK36864.1| Replication factor C subunit 2 [Myotis davidii]
Length = 222
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/224 (64%), Positives = 175/224 (78%), Gaps = 11/224 (4%)
Query: 84 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPI 143
MFAQQKVTLP G+HKI+ILDEADSMTDGAQQALR+TMEIYS TTRFALA N S+KIIEPI
Sbjct: 1 MFAQQKVTLPKGQHKIIILDEADSMTDGAQQALRKTMEIYSKTTRFALAYNASDKIIEPI 60
Query: 144 QSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203
QSRC +LRY KLT+ Q+L +++ + EKEN+ +T GLEAI+FTAQGDM+Q LNNLQST +
Sbjct: 61 QSRCTVLRYTKLTNGQVLIRLMNVIEKENVQYT--GLEAIIFTAQGDMQQVLNNLQSTFS 118
Query: 204 GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR 263
GFG + +E VFK VKEM+ +CV N +Y I+ HL+ LGY+PEDIIGNIF+
Sbjct: 119 GFGFINSENVFK---------VKEMIQHCVNANTDKAYTILAHLWHLGYSPEDIIGNIFQ 169
Query: 264 VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
V K + E LKL I+EI H++I+EGVNSLLQ+ GLL RLC
Sbjct: 170 VCKIFQMAEYLKLEFIKEIRYTHMKIAEGVNSLLQMEGLLTRLC 213
>gi|444720577|gb|ELW61359.1| Replication factor C subunit 2 [Tupaia chinensis]
Length = 197
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 162/188 (86%)
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
MEIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKEN+ +T+DG
Sbjct: 1 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMNVIEKENVQYTDDG 60
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ +
Sbjct: 61 LEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDE 120
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+YKI+ HL+ LGY+PEDIIGNIFR+ KT + E LKL I+EIG H++++EGVNSLLQ+
Sbjct: 121 AYKILAHLWHLGYSPEDIIGNIFRMCKTFQMAEYLKLEFIKEIGYTHMKVAEGVNSLLQM 180
Query: 300 SGLLARLC 307
+GLLARLC
Sbjct: 181 AGLLARLC 188
>gi|339239913|ref|XP_003375882.1| replication factor C subunit 2 [Trichinella spiralis]
gi|316975429|gb|EFV58873.1| replication factor C subunit 2 [Trichinella spiralis]
Length = 251
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/213 (61%), Positives = 171/213 (80%), Gaps = 6/213 (2%)
Query: 55 LLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 114
+LG +F +AVLELNASNDRGID +RNK+KMFAQQ+VTLP G+ KIVILDEADSMTDGAQQ
Sbjct: 1 MLGSAFGNAVLELNASNDRGIDVIRNKVKMFAQQRVTLPAGKQKIVILDEADSMTDGAQQ 60
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTMEIYS TTRF ACN S+KIIEPIQSRCA++R+ L +AQ+L++++ +C EN++
Sbjct: 61 ALRRTMEIYSKTTRFVFACNESDKIIEPIQSRCAIIRFTYLLNAQILARILTVCRMENVN 120
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
+T DGLE +VFTA+GDMR S G G V +E VFK+CDEPHPL VK+ML +C
Sbjct: 121 YTKDGLEDLVFTARGDMR------ISCVAGSGFVNSENVFKICDEPHPLVVKDMLDHCSR 174
Query: 235 GNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT 267
+ +++++I+HL+ LGY+ EDI+G I+RV K+
Sbjct: 175 ADQHEAHEVINHLWTLGYSAEDIVGTIYRVCKS 207
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 205/316 (64%), Gaps = 2/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E V+RLK ++ +G++P+++ +GPPG GKT+ L LAR L G ++
Sbjct: 19 VEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFGENW 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGI+ +R K+K FA+ K + KI+ LDEAD++T AQQALRRTM
Sbjct: 79 RHNFLELNASDERGINVIREKVKEFARTK-PIGGASFKIIFLDEADALTQDAQQALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++SN RF L+CN S KIIEPIQSRCA+ R+ L D + ++ I E+E + T +GL
Sbjct: 138 EMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIAEQEGLELTEEGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKD 239
+AI++ A+GD+R+A+N LQ+ +T E VF V P V+EM+ +EGN +K
Sbjct: 198 QAILYVAEGDLRRAINVLQAAAALDKKITDENVFLVASRARPEDVREMMTLALEGNFLKA 257
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K+ L K G + ED++ + + L IPE K+++ +IG + R+ EG N ++QL
Sbjct: 258 RDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALADKIGEYNFRLVEGANEMIQL 317
Query: 300 SGLLARLCIVGSKNKK 315
LLA+ I+G K K
Sbjct: 318 EALLAQFTIMGDKKGK 333
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/315 (44%), Positives = 204/315 (64%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E V+RLK + +G++P+++ +GPPGVGKTT L LAR L G ++
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ LELNAS++RGI+ +R K+K FA+ K P G KI+ LDEAD++T AQQALRR
Sbjct: 76 RHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLDEADALTQDAQQALRR 132
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME++S+ RF L+CN S KIIEPIQSRCA+ R+ L D + ++ I E E + T +
Sbjct: 133 TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEE 192
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
GL+AI++ A+GDMR+A+N LQ+ +T E VF V P ++EM+L ++GN +
Sbjct: 193 GLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFL 252
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ L K G + ED++ + + L I EP K+ + +IG + R+ EG N ++
Sbjct: 253 KAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEII 312
Query: 298 QLSGLLARLCIVGSK 312
QL LLA+ ++G K
Sbjct: 313 QLEALLAQFTLIGKK 327
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 204/313 (65%), Gaps = 6/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E ++RLK + +G++P+++ +GPPG GKTT+ L LAR L G ++
Sbjct: 16 VEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFGENW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ LELNAS++RGI+ +R K+K FA+ K P G KI+ LDEAD++T AQQALRR
Sbjct: 76 RHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLDEADALTQDAQQALRR 132
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME++SN RF L+ N S +IIEPIQSRCA+ R+ L+D + ++ I E+E + T +
Sbjct: 133 TMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIAEQEGLELTEE 192
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
GL+AI++ A+GD+R+A+N LQ+ +T E VF V P ++EM+L +EGN +
Sbjct: 193 GLQAILYVAEGDLRRAINVLQAAAALDKKITDENVFTVASRARPEDIREMMLLALEGNFL 252
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ L K G + ED++ + R L I EP K+ + +IG + R+ EG N ++
Sbjct: 253 KAREKLREILLKQGLSGEDVLIQMHREVFNLPISEPKKVQLADKIGEYNFRLVEGANEMI 312
Query: 298 QLSGLLARLCIVG 310
QL LLA+ ++G
Sbjct: 313 QLEALLAQFTLIG 325
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 201/313 (64%), Gaps = 6/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T +IVG ++ V+RLK + ++P+++ SGPPGVGKTT LCLAR L G ++
Sbjct: 6 VEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGENW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGID +R K+K FA+ K P G KI+ LDE+D++T AQ ALRR
Sbjct: 66 RENFLELNASDERGIDVIRTKVKDFARTK---PIGDVPFKIIFLDESDALTPDAQNALRR 122
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME YS+ RF L+CN KII PIQSRCA+ R++ L + K+ EI EKE + T
Sbjct: 123 TMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEKEGLKLTES 182
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEAI++ ++GDMR+A+N LQ+ + E V+KV P VK+M+ +EG
Sbjct: 183 GLEAIIYVSEGDMRKAINVLQTAAALSEVIDDEIVYKVSSRARPEEVKKMMELALEGKFV 242
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ +++ L + G + EDI+ +FR LDI E K+ + IG RI EG N +
Sbjct: 243 EARDLLYKLMVEWGMSGEDILNQMFREINNLDIDERKKVELADAIGETDFRIVEGANERI 302
Query: 298 QLSGLLARLCIVG 310
QLS LLA++ ++G
Sbjct: 303 QLSALLAKMALMG 315
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 202/313 (64%), Gaps = 6/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG + V+RLK + +G++P+++ +GPPGVGKTT LCL R L G +
Sbjct: 16 VEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFGEHW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ LELNAS++RGI+ +R K+K FA+ K P G KI+ LDEAD++T AQQALRR
Sbjct: 76 RHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLDEADALTQDAQQALRR 132
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME++SN RF L+CN S KIIEPIQSRCA+ R+ L D + ++ I E E + T +
Sbjct: 133 MMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAENEGLELTEE 192
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
GL+A+++ A+GD+R+A+N LQ+ +T E VF V P ++EM+L +EGN +
Sbjct: 193 GLQALLYIAEGDLRRAINVLQAAAALDTKITDENVFLVASRARPEDIREMMLMALEGNFL 252
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ L K G + ED++ + + L I EP K+++ +IG + R+ EG N ++
Sbjct: 253 KAREKLREILLKQGLSGEDVLIQMHKEVFNLPISEPKKVALADKIGEYNFRLVEGANEMI 312
Query: 298 QLSGLLARLCIVG 310
QL LLA+ ++G
Sbjct: 313 QLEALLAQFTLLG 325
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 201/313 (64%), Gaps = 6/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E V+RLK + +G++P+++ +GPPGVGKTT L LAR L G +
Sbjct: 16 VEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEHW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ LELNAS++RGI+ +R K+K FA+ K P G KI+ LDEAD++T AQQALRR
Sbjct: 76 RHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLDEADALTQDAQQALRR 132
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME++S RF L+CN S KIIEPIQSRCA+ R+ L D + ++ I E E + T D
Sbjct: 133 TMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAENEGLELTED 192
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
GL+A+++ A+GD+R+A+N LQ+ +T E VF V P V+EM+ +EGN +
Sbjct: 193 GLQALLYVAEGDLRRAINVLQAAAALDRKITDENVFLVASRARPEDVREMMNLALEGNFL 252
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ L K G + ED++ + + L IPE K+++ +IG + R+ EG N ++
Sbjct: 253 KAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALADKIGEYNFRLVEGANEMI 312
Query: 298 QLSGLLARLCIVG 310
QL LLA+ ++G
Sbjct: 313 QLEALLAQFTLMG 325
>gi|440291261|gb|ELP84530.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 205/310 (66%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VGN+D +E LK F SS P++++ G PG+GKTT+I CLAR LL +
Sbjct: 22 VEKYRPKVLEDVVGNKDVIETLKSFRSSKQFPHLLLCGQPGIGKTTSIHCLARELLKDKY 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGIDT+R IK F ++KV LP K+VILDEADSMT A QALRRTM
Sbjct: 82 KEAVLELNASDERGIDTIRTTIKAFCEKKVMLPDNIPKVVILDEADSMTTAAFQALRRTM 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRF LACN EK+IEPIQSRC+ L + L+ ++++++ +I E+++ +D +
Sbjct: 142 EIHSKTTRFVLACNTPEKVIEPIQSRCSRLNFRPLSTDEVINRITKIARLESMNIADDAI 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI ++GD+R+A+N LQ+ G +TAE V++ D P + + L NC++ N ++
Sbjct: 202 KAIEIISEGDLRKAVNALQTCAVLKGTITAENVYQRNDLPSADVILKALSNCLKKNFDEA 261
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ + LG+ D+I + ++ +D E +++ + + +R VNS +Q+
Sbjct: 262 VDEVSKISVLGFDGNDVIDMLVKMISKVDTSEEIRVKLYEAAAPFLIR---RVNSYVQVY 318
Query: 301 GLLARLCIVG 310
G+LA+ C+V
Sbjct: 319 GMLAQFCLVN 328
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 198/315 (62%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP D+VG D +ERL+ + + N+P+++ SGPPGVGKT T + +AR L G +
Sbjct: 7 IEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGDDW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
++ ELNAS++RGID VR KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 67 RENFTELNASDERGIDVVRTKIKNFAK---TSPIGGADFKIIFLDEADALTPDAQSALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+N RF L+CN S KIIEPIQSRCA+ R+ L+D + + I EKE + +D
Sbjct: 124 TMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEGLDIADD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G+EAI + A+GDMR+A+N +Q+ + A+ ++++ HP +K +L + + GN
Sbjct: 184 GIEAIKYVAEGDMRKAINAVQAASMFDTSIHADSIYRITATAHPEEIKALLESALGGNFI 243
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S K + L G + ED++G ++R LDIP +SI+ +G + RI+EG + +
Sbjct: 244 SSRKKLDDLMVSRGLSGEDVVGQVYRSLFDLDIPARKLVSIVDVLGEIDFRITEGADERI 303
Query: 298 QLSGLLARLCIVGSK 312
QL LLA L I G +
Sbjct: 304 QLDALLAHLSIEGEE 318
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/316 (45%), Positives = 201/316 (63%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ DIV +D VERLK F N+P+++ SGPPG GKTT L L L G +++
Sbjct: 11 EKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDNYR 70
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
LELNAS++RGID +RNK+K FA+ T+ G K+V+LDEAD+MT AQQALRRT
Sbjct: 71 QYFLELNASDERGIDVIRNKVKEFAR---TVAGGNVPFKVVLLDEADNMTADAQQALRRT 127
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF LACN KIIEPIQSR A+ R+ L +++++ I + E + +
Sbjct: 128 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKA 187
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
LE I QGDMR+A+N LQ++ + +G VT E V+KV P ++EM++ ++GN +K
Sbjct: 188 LETIYDITQGDMRKAINILQAS-SVYGKVTVEAVYKVLGLAQPKEIREMIMLALQGNFLK 246
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
K+ L G + EDII I R ++IP+ LK+ ++ IG V RI EG +
Sbjct: 247 AREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDE 306
Query: 297 LQLSGLLARLCIVGSK 312
+QL+ LLA+L + G K
Sbjct: 307 IQLNALLAKLAVYGEK 322
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 203/315 (64%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG ++ ++RLK + N+P+++ SGPPG GKT T + LAR L G ++
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D +E+NAS++RGID VR+KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 68 RDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALRR 124
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME+YS + RF L+CN +IIEPIQSRCA+ R+ + + +++EICEKE + T D
Sbjct: 125 TMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEA+++ + GD R+A+N LQ V A+ ++++ P + E++ ++GN
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFM 244
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ +++ L + G + EDI+ +FR ++ I + LK+ +I ++G V R++EG N +
Sbjct: 245 EARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERI 304
Query: 298 QLSGLLARLCIVGSK 312
QL LA L + K
Sbjct: 305 QLDAYLAYLSTLAKK 319
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 199/311 (63%), Gaps = 6/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP DIVG + ++RLK + S+ N+P+++ SGPPGVGKT + +A+ L G ++
Sbjct: 7 IEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFGDAW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
ELNAS++RGID VR KIK F++ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 67 HQNFTELNASDERGIDVVRTKIKDFSK---TSPIGGADFKIIFLDEADALTPDAQSALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+N RF L+CN S KIIEPIQSRCA+ R+ L+ + +V I E+E + + D
Sbjct: 124 TMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEGLQISED 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G+EAI + +QGDMR+A+N LQ++ + + ++K+ HP ++E++ ++GN K
Sbjct: 184 GVEAIKYVSQGDMRKAINALQASALIDDVIDKDTIYKITATAHPEEIEELVQKALDGNFK 243
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + + L + G + ED++G I+R LDIPE L + ++ +IG + R++EG N +
Sbjct: 244 AARETMEKLMSEQGLSGEDVVGQIYRAIFNLDIPEKLMVELVDKIGEIDFRLTEGANERI 303
Query: 298 QLSGLLARLCI 308
QL LLA +
Sbjct: 304 QLEALLAHFTL 314
>gi|413919223|gb|AFW59155.1| hypothetical protein ZEAMMB73_461194 [Zea mays]
Length = 188
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 121/171 (70%), Positives = 147/171 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +D+VGN D V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLGPS+
Sbjct: 16 VEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPSY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+DAVLELNAS+DRG+D VRNKIKMFAQ+KVTL PGRHKIVILDEADSMT GAQQALRRTM
Sbjct: 76 RDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
EIYSNTTRFALACN S KIIEPIQSRCA++R+++L+D ++L +++ + E
Sbjct: 136 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 186
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 199/316 (62%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ DIV +D VERLK F N+P+++ +GPPG GKTT L L L G S++
Sbjct: 9 EKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDSYE 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
LELNAS++RGID +RNK+K FA+ V+ +P K+++LDEAD+MT AQQALRRT
Sbjct: 69 QFFLELNASDERGIDVIRNKVKEFARTMVSSSVP---FKVILLDEADNMTADAQQALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ +TRF LACN KII+PIQSR A+ R+ L ++S++ I ++E + +
Sbjct: 126 MELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVEYDEKA 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
LE I GDMR+A+N LQ+ + +G VT E VFKV P V++ML + G M+
Sbjct: 186 LETIYDVTMGDMRKAINTLQAA-SAYGKVTIETVFKVLGLAQPKEVRDMLKLALSGKFME 244
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
K+ L G + EDI+ + R + L IPE L++ ++ IG V RI EG +
Sbjct: 245 AREKLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEFRIIEGADDE 304
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LLA++ I G+K
Sbjct: 305 IQLSALLAKIAIYGNK 320
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GKTT +AR + G +
Sbjct: 22 IEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYGDDW 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 82 RENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRTM 139
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI E E I T+DG+
Sbjct: 140 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAETEGIEVTDDGV 199
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+EM+ + + G+ +
Sbjct: 200 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVDHAIAGDFTAA 259
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A T DIPE + +++ +G V RI+EG N LQL
Sbjct: 260 RAALEDLLTDRGLAGGDVIDQLHRSAWTFDIPEQATVRLLERLGEVDFRITEGANERLQL 319
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 320 EAMLASLAL 328
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 193/314 (61%), Gaps = 6/314 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP D+VG ++ +ERLK + + N+P+++ SGPPGVGKT T + +A L G S+
Sbjct: 7 IEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFGDSW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ ELNAS++RGID VR KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 67 NENFTELNASDERGIDVVRTKIKNFAK---TSPIGGADFKIIFLDEADALTSDAQSALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ RF L+CN S KIIEPIQSRCA+ R+ L D + ++ + + E I +D
Sbjct: 124 TMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAEGIKLADD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++AI + AQGDMR+ALN LQ+ + E ++K+ HP +K ++ ++GN
Sbjct: 184 AIDAIGYVAQGDMRKALNALQAAAMFDETIQKEMIYKITATAHPDEIKTLINIALDGNFS 243
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + + L + G + ED++G I+R LDIP+ + +I IG + RI+EG N +
Sbjct: 244 AAREKLDTLMLEQGLSGEDVVGQIYRAMFGLDIPDKKLVELIDVIGEIDFRITEGANEKI 303
Query: 298 QLSGLLARLCIVGS 311
QL LLA I S
Sbjct: 304 QLQALLAHFVIANS 317
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 138/316 (43%), Positives = 199/316 (62%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ DIV D VERLK F N+P+++ +GPPG GKTT+ L L L G +++
Sbjct: 9 EKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYGENYE 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+LELNAS++RGID +RNK+K FA+ T+ PG K V+LDEAD+MT AQQALRRT
Sbjct: 69 QYLLELNASDERGIDVIRNKVKEFAR---TVTPGSVPFKTVLLDEADNMTADAQQALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF LACN KII+PIQSR A+ R+ L ++S++ I ++E + +
Sbjct: 126 MELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQEGVQYDPKA 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L+ I GDMR+A+N LQ+ + +G VT E VFKV P V++M+ ++G D
Sbjct: 186 LDVIYDVTNGDMRKAINVLQAA-SAYGKVTQEAVFKVLGLAQPKEVRDMVKLALQGRFMD 244
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K++ + G + EDI+ + R + IPE L++ + IG V RI EG +
Sbjct: 245 ARSKLLSLIINYGLSGEDIVKQVHRDIFSNEYQIPEELRVLLTDYIGEVEFRIIEGADDE 304
Query: 297 LQLSGLLARLCIVGSK 312
+QLS +LA+L ++G K
Sbjct: 305 IQLSAMLAKLALLGQK 320
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 201/312 (64%), Gaps = 6/312 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT S++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELN+S++RGID +R K+K FA+ K P G K++ LDE+D++T AQ ALRR
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK---PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME YS+ RF L+CN KII PIQSRCA+ R++ L L+ + EI EKEN++
Sbjct: 123 TMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKG 182
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G++AI++ ++GDMR+A+N LQ+ VT E V+KV + P +K+M + G
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+S + +++L G + EDI+ IFR LDI E K+ +++ IG RI EG N +
Sbjct: 243 ESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 298 QLSGLLARLCIV 309
QLS LLA++ I+
Sbjct: 303 QLSALLAKMGIL 314
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 197/314 (62%), Gaps = 5/314 (1%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T DI+ +D RL F N+P+++ +GPPG GKTT LA L G S++
Sbjct: 19 EKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYGESYQ 78
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+LELNAS++RGIDT+R K+K FA+ K T P KIV+LDEAD+MT AQQALRR ME
Sbjct: 79 QFMLELNASDERGIDTIREKVKEFARSK-TPPEIPFKIVLLDEADNMTSDAQQALRRLME 137
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+YS +TRF LA N KII+PIQSRCA R+ L ++ ++ I +KE + + D L+
Sbjct: 138 LYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEGVDYEEDALD 197
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
I ++GDMR+A+N LQ++ G VT+E VFKV P + +M+ ++GN ++
Sbjct: 198 IIFEISEGDMRKAINILQASAY-LGKVTSELVFKVVGMARPKDITDMIETALKGNFIEAR 256
Query: 242 KIIHH-LYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ + + G + ED++ I R + + I + L++ I +G +H RISEG + +Q
Sbjct: 257 EILRKVMIEYGLSGEDVVKQIHREIMGPDIKINDELRVLIADYLGEIHFRISEGSDEDIQ 316
Query: 299 LSGLLARLCIVGSK 312
LS LA L ++G K
Sbjct: 317 LSAFLAWLSMMGKK 330
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 192/316 (60%), Gaps = 6/316 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D+VG E+ VERL+ + SG++P+++ +GP GVGKTT + LAR G ++
Sbjct: 9 IEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREFFGETW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ ELNAS++RGID VRN+IK FA+ T P G K++ LDEAD++T AQ ALRR
Sbjct: 69 QMNFRELNASDERGIDVVRNQIKQFAR---TSPLGGATFKVLFLDEADALTPDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ L +A + +V + E IS T+D
Sbjct: 126 TMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRVAAAEEISLTDD 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
+ AI + A+GDMR+ALN LQ + A +++ P + ++L C +G+
Sbjct: 186 AVHAIAYIAEGDMRKALNALQGAAILSDRIDARMIYETTSTAKPEEIADLLGLCTKGDFT 245
Query: 239 DSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + HL + G AP ++I FR + + LK++ I IG RISEG ++ +
Sbjct: 246 GAQGALRHLLRNRGIAPGELINQCFRALTSYQMDTALKVAYIDHIGEADFRISEGADAEI 305
Query: 298 QLSGLLARLCIVGSKN 313
Q+ L+A + K
Sbjct: 306 QMDALIALFVLSAQKQ 321
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 198/314 (63%), Gaps = 5/314 (1%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ DIV +D VERLK F N+P+++ +GPPG GKTT+ L L L G +++
Sbjct: 9 EKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYGENYR 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
LELNAS++RGID +RNK+K FA+ VT K V+LDEAD+MT AQQALRRTME
Sbjct: 69 QYFLELNASDERGIDVIRNKVKDFART-VTPQDVPFKTVLLDEADNMTADAQQALRRTME 127
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+Y+ TTRF LACN KII+PIQSR A+ R+ L ++S++ I + E + + L+
Sbjct: 128 LYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNEKVEYDPKALD 187
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
I GDMR+A+N LQ++ + +G VT E V+KV P ++EM+ + ++G ++
Sbjct: 188 TIYEITSGDMRKAINILQAS-SAYGKVTTEAVYKVLGMAQPKEIREMVKSALQGRFTEAR 246
Query: 242 -KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K++ + G + EDI+ + R + IPE L++ + +G V RI EG + +Q
Sbjct: 247 SKLLSLMINYGLSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVEYRIIEGADDEIQ 306
Query: 299 LSGLLARLCIVGSK 312
LS +LAR+ ++G K
Sbjct: 307 LSAMLARISLLGQK 320
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 199/319 (62%), Gaps = 10/319 (3%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T +++G E V RLK + +GN+P+++ SGPPGVGKT + LA+ + G +++
Sbjct: 19 EKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFGDTWQ 78
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRT 119
+ ELNAS++RGID VRN IK FA+ T P G R KI+ LDEAD++T AQ ALRRT
Sbjct: 79 NNFTELNASDERGIDVVRNNIKNFAR---TAPLGDARFKIIFLDEADALTSDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL--TDAQLLSKVIEICEKENISHTN 177
ME Y+ T RF ++CN S KIIEPIQSRCA+ R+ L D + +++ IE + E I T
Sbjct: 136 MERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMARRIE--KGEGIKITK 193
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
DGL+AI++ A+GDMR+A+N LQS +TAE V++ P ++EML + G
Sbjct: 194 DGLDAIIYVARGDMRRAVNALQSASTVSKDITAEAVYETTSTARPKEIEEMLKLALNGQF 253
Query: 238 KDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
DS K+ L K G + DII I+ +L + E + ++++ IG R++EG N
Sbjct: 254 MDSRNKLDDLLIKYGLSGSDIIDQIYASMFSLGLDEDVLVALVDRIGEADFRLTEGGNER 313
Query: 297 LQLSGLLARLCIVGSKNKK 315
+Q+ LLA + G KK
Sbjct: 314 IQVEALLAHFKMHGEAMKK 332
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RLK + +PN++ +GP G GKTT + +AR + G +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGIAREIYGDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI E I T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIEVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V++M+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEKMVEHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWEFDIPEMATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 195/315 (61%), Gaps = 2/315 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T D++G E V RLK + SGN+P+++ SGPPGVGKT + LA+ + G +++
Sbjct: 9 EKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFGDAWQ 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ +ELNAS++RGI+ VRN IK FA+ L R K++ LDEAD++T AQ ALRRTME
Sbjct: 69 NNFIELNASDERGIEVVRNNIKNFARTS-PLGEARFKVIFLDEADALTADAQSALRRTME 127
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
Y+ T RF ++CN S KIIEPIQSRCA+ R+ L + + V I + E+I + DGLE
Sbjct: 128 RYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHIKVSPDGLE 187
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+++ A+GDMR+A+N LQS HVTA+ VF+ P +++ML + G D+
Sbjct: 188 ALIYVARGDMRRAINALQSASTVTKHVTADVVFETMSIARPKEIEDMLKLALNGQFMDAR 247
Query: 242 -KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
K+ L K G + D++ I+ L + E + + ++ IG R++EG N +Q+
Sbjct: 248 NKLDDLLIKYGLSGNDVVDQIYSAMFALGLDEGVLVDLVDRIGEADFRLTEGANERIQVE 307
Query: 301 GLLARLCIVGSKNKK 315
LLA + G KK
Sbjct: 308 ALLAHFKMHGEAMKK 322
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 189/313 (60%), Gaps = 6/313 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP DIVG + + RLK + S N+P+++ SGPPGVGKT T + +A+ L S+
Sbjct: 22 IEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFADSW 81
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
++ ELNAS++RGID VR KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 82 RENFTELNASDERGIDVVRTKIKSFAK---TSPIGGADFKIIFLDEADALTSDAQAALRR 138
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+N RF L+CN S KIIEPIQSRCA+ R+ L+D + +V + E I D
Sbjct: 139 TMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEGIEVATD 198
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G+EAI + AQGDMR+A+N LQ+ V + ++K+ P + +++ + GN
Sbjct: 199 GMEAIKYVAQGDMRKAINALQAASLVDNVVHKDTIYKITATARPEQITDLINTALSGNFM 258
Query: 239 DSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ K + L G + ED++G I+R + IP+ + +I IG V RI+EG N +
Sbjct: 259 AARKYLDELLLDQGLSGEDVVGQIYRAMFNISIPQEKMVELIDVIGEVDFRIAEGANERI 318
Query: 298 QLSGLLARLCIVG 310
QL L+A + G
Sbjct: 319 QLEALIAHFTLRG 331
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 193/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+ED + RLK + ++P+++ +GP G GKTT +AR + +
Sbjct: 26 IEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDDDW 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 86 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LTD + ++V EI ++I T+DG+
Sbjct: 144 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIAADQDIEVTDDGV 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+EM+ + ++G+ +
Sbjct: 204 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVGHAIDGDFTAA 263
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 264 RAALEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQL 323
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 324 EAMLASLAL 332
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 193/316 (61%), Gaps = 5/316 (1%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ +IV ED V RLK F NVP+++ +GPPG GKTT L LA L G ++
Sbjct: 11 EKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYGEKYR 70
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+LELNAS++RGID +R K+K FA+ + T P K+VILDEAD+MT AQQALRR ME
Sbjct: 71 QYILELNASDERGIDVIRTKVKEFARSR-TPPTVPFKLVILDEADNMTADAQQALRRLME 129
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+YS TTRF L N KIIEP+QSRC R+ L +++ ++ IC+KE + D LE
Sbjct: 130 MYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGVQCEEDALE 189
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
I ++GDMR+A+N LQ+ G VT + V+K HP +KE+L + G+ S
Sbjct: 190 EIYNISEGDMRKAINILQAA-AALGKVTKDAVYKAIGYVHPSKIKEILEYALNGDFTKSA 248
Query: 242 KIIHH-LYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K++ + + G + D++ R + + ++PE LK+ + G V R++EG + +Q
Sbjct: 249 KLLRDVMIEYGLSGLDVLKMFQRELMGGSFELPEELKVLLADYAGEVQFRLAEGADDEVQ 308
Query: 299 LSGLLARLCIVGSKNK 314
L LARL ++G K K
Sbjct: 309 LQAFLARLALLGPKFK 324
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RLK + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R+ +LTD ++V EI +E I T+DG+
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQVREIAAEEGIEVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+VF A GDMR+A+N LQ+ V E VF + P V+EM+ + ++G+ +
Sbjct: 198 DALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITSTARPEEVEEMVEHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A DIPE + +++ +G V RI+ G N LQL
Sbjct: 258 RAALEDLLTDRGLAGGDVIDQLHRSAWQFDIPERATVRLLERLGEVDYRITTGANERLQL 317
Query: 300 SGLLARLCI 308
G+LA L +
Sbjct: 318 EGMLASLAL 326
>gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1]
gi|74630071|sp|Q8SQM0.1|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 309
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 202/312 (64%), Gaps = 9/312 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KY+P DIVGNE T+E + + S ++P+++ +GPPG GKTT LAR LLG
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGN-- 62
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ +LELNAS++RGIDTVR IK FAQ++V KI+ILDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S+ RF L CN KI EPIQSRCA+LR++++ + +L ++ EI E E I T + L
Sbjct: 121 EIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +V + GDMRQ+LN LQ+ N G V +Y+ K+ P P ++++L ++ ++++
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ +++ + P D+I + FR AK ++ E LK+ IG +LRISEGVNS LQ
Sbjct: 241 LEMFDEIWEEKFDPLDLINSFFRAAKNMESYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 301 GLLARLCIVGSK 312
G+ + +GSK
Sbjct: 296 GMFWDILDMGSK 307
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQAIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI E E I T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAENEGIEVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+EM+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEEMVEHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWEFDIPELATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 197/316 (62%), Gaps = 6/316 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG E+ ++RL + N+P+++ +GPPG GKT + + LAR L G ++
Sbjct: 9 VEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLFGENW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D +E+NAS++RGID VR+KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 RDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGDAPFKIIFLDEADALTPDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME+YS RF L+CN +IIEPIQSRCA+ ++ + + +++EICE E + T D
Sbjct: 126 TMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICENEGVKITED 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEA+++ + GD R+A+N LQ V AE ++++ P + +L +EG
Sbjct: 186 GLEALIYVSNGDFRKAINALQGAAALGKVVDAEAIYQITATARPEELANLLETALEGKFM 245
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ I+ L + G + ED++ +FR + + E +K+ +I ++G + R++EG + +
Sbjct: 246 EARSILDKLMIEYGMSGEDVVSQLFREILSSGMDEKMKVLLIDKLGEIDFRLTEGAHERI 305
Query: 298 QLSGLLARLCIVGSKN 313
QL LA L VG K
Sbjct: 306 QLDAYLAYLSTVGKKR 321
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 188/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E+I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ N ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRNAIDGEFTAA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGANEQVQ 314
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 196/314 (62%), Gaps = 5/314 (1%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ +IV ++ VERL F + N+P+++ +GPPG GKTT LA L G ++
Sbjct: 12 EKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGDNYT 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+LELNAS++RGIDT+R K+K FA+ K T P KIV+LDEAD+MT AQQALRR ME
Sbjct: 72 QYMLELNASDERGIDTIREKVKEFARSK-TPPDIPFKIVLLDEADNMTADAQQALRRLME 130
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+YS TRF LA N KII+PIQSRCA R+ L ++ ++ I EKEN+ + D LE
Sbjct: 131 LYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENVKYDEDALE 190
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
AI ++GDMR+A+N LQ T G V + V+KV P ++EM+ ++G+ +
Sbjct: 191 AIYDISEGDMRKAINILQ-TAASLGKVDVDSVYKVVGMARPKDIREMVEEALKGDFTGAR 249
Query: 242 KIIHH-LYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+++ + + G + ED++ I R + L IPE L++ I +G +H RI EG + +Q
Sbjct: 250 ELLRKVMIEYGLSGEDVVRQIHRELFSNDLKIPEELRVMIADYLGEIHYRIVEGSDDDIQ 309
Query: 299 LSGLLARLCIVGSK 312
LS LA L ++ +
Sbjct: 310 LSAFLAWLAMMSKR 323
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 193/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RLK + ++P+++ +GP GVGKT + +AR + G +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGVGKTASAQAIAREVYGDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 KENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +L D + +++ EI E I T++G+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDDAVETQIREIAATETIELTDNGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+EM+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVEEMVEHAIDGDFTAA 257
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D+ G ED V+RL+ + + ++P+++ +GP G+GKTT +AR + G +
Sbjct: 15 IEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGDDW 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++I+ LDEADS+T AQ ALRRTM
Sbjct: 75 RGNFLELNASDERGIDVVRDRIKNFA--RASFGGHDYRIIFLDEADSLTSDAQSALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R+ L+D + ++ +I ++E I T++GL
Sbjct: 133 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADREGIEMTDEGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ G V E V+ + P ++ M+ +EG+ +
Sbjct: 193 DALVYAADGDMRRAINSLQAAATTGGVVDEEAVYLITSTARPEEIESMVTAAIEGDFAQA 252
Query: 241 Y-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K+ L G A DII + R A + + + +++ IG RI+EG N +QL
Sbjct: 253 RSKLDTLLTDTGMAGGDIIDQLHRGAWDFGLDQRETVRLMERIGEADYRITEGANEQVQL 312
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 313 EAMLASLAL 321
>gi|363745367|ref|XP_003643277.1| PREDICTED: replication factor C subunit 2-like, partial [Gallus
gallus]
gi|363745602|ref|XP_003643342.1| PREDICTED: replication factor C subunit 2-like, partial [Gallus
gallus]
Length = 175
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 146/166 (87%)
Query: 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201
PIQSRCA+LRY KLTD+Q+L+++++I EKE++ +T+DGLEAI+FTAQGDMRQALNNLQST
Sbjct: 1 PIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQST 60
Query: 202 HNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNI 261
++GFG + +E VFKVCDEPHPL VKEM+ +C+ N+ ++YKI+ HL++LGY+PED+IGNI
Sbjct: 61 YSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNI 120
Query: 262 FRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
FRV KT +PE LKL I+EIG H++I+EGVNSLLQ++GLLARLC
Sbjct: 121 FRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLC 166
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 189/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VG+ D ERL+ + ++P+++ +GP G GKT + + +A+ L G +
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDW 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+D LELNAS++RGID VR++IK FA + + ++++ LDEAD++TD AQ ALRRTM
Sbjct: 73 QDNFLELNASDERGIDVVRDRIKDFA--RSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S KII+PIQSRCA+ R+ +L D + + + EI E E + HT+DG+
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGI 190
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P ++ M+ + G+ +
Sbjct: 191 DALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAAA 250
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A DII + R D+ E + ++ +G RI+EG N +QL
Sbjct: 251 RATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQL 310
Query: 300 SGLLARLCI 308
LLA + +
Sbjct: 311 EALLASVAL 319
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 199/314 (63%), Gaps = 7/314 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +++VG +D VERL+ + ++ +P+++ +G GVGKTT + LAR + G ++
Sbjct: 9 IEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDTW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 NMNFRELNASDERGIDVVRNQIKQFAR---TAPLGDATFKILFLDEADALTQDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ LTD + ++ I +KE I+
Sbjct: 126 TMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEG 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
AI + + GDMR+A+N LQ HVTAE ++ + P + ++L C+EG+ +
Sbjct: 186 AYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLARCLEGDFE 245
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ +++H L Y G AP +++ ++R ++++ + LK+ +I +G R+SEG ++
Sbjct: 246 TAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADAD 305
Query: 297 LQLSGLLARLCIVG 310
+Q+ LLAR+ G
Sbjct: 306 IQMDALLARIVRSG 319
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +DI G+ D V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI E I T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQVREIAANEEIDVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+VF A GDMR+A+N LQ+ V E VF + P V+ M+ + ++G+ +
Sbjct: 198 DALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +DI G+ D V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI E I T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIDVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+VF A GDMR+A+N LQ+ V E VF + P V+ M+ + ++G+ +
Sbjct: 198 DALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A D+PE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|449330253|gb|AGE96513.1| replication factor c 37kDa subunit [Encephalitozoon cuniculi]
Length = 309
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 202/312 (64%), Gaps = 9/312 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KY+P D+VGNE T+E + + S ++P+++ +GPPG GKTT LAR LLG
Sbjct: 5 VNKYQPSEIQDMVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGN-- 62
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ +LELNAS++RGIDTVR IK FAQ++V KI+ILDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S+ RF L CN KI EPIQSRCA+LR++++ + +L ++ EI E E I T + L
Sbjct: 121 EIHSSECRFILICNMFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +V + GDMRQ+LN LQ+ N G V +Y+ K+ P P ++++L ++ ++++
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ +++ + P D+I + +R AK ++ E LK+ IG +LRISEGVNS LQ
Sbjct: 241 LEMFDEIWEEKFDPLDLINSFYRAAKNMESYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 301 GLLARLCIVGSK 312
G+ + +GSK
Sbjct: 296 GMFWDILDMGSK 307
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 191/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 30 IEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDDW 89
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 90 RENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRTM 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI ++I T+DG+
Sbjct: 148 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDGV 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+EM+ + G+ +
Sbjct: 208 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVDQAIAGDFTAA 267
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 268 RASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEKETVRLLERLGEVDFRITEGANERLQL 327
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 328 EAMLASLAL 336
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 191/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 32 IEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDDW 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 92 RENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRTM 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI ++I T+DG+
Sbjct: 150 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDGV 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+EM+ + G+ +
Sbjct: 210 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVEQAIAGDFTAA 269
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 270 RASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLERLGEVDFRITEGANERLQL 329
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 330 EAMLASLAL 338
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 196/318 (61%), Gaps = 9/318 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T +IV E+ V RLK F N+P+++ +GPPG GKTT CLA L G +++
Sbjct: 15 EKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGENYR 74
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++RGID +R+K+K FA+ +V +P KIV+LDEAD+MT AQQALRR
Sbjct: 75 QYMLELNASDERGIDVIRSKVKEFARTRVAANIP---FKIVLLDEADNMTADAQQALRRL 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF L N KIIEPIQSRCA+ R+ L ++S++ I E+E + +
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEA 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI ++GDMR+A+N LQ+ G VT + V+KV HP +++M+ + GN D
Sbjct: 192 LEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIRQMIQLALAGNFND 250
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + + L G + D+I + R + + IP+ K+ I G + R+ EG +
Sbjct: 251 AREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADDE 310
Query: 297 LQLSGLLARLCIVGSKNK 314
+QL+ LARL +G K K
Sbjct: 311 IQLNAFLARLAFLGKKLK 328
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 200/310 (64%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T S++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + +I EKEN++ G+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ +T E V+KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFVEA 244
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +++L G + EDI+ +FR LDI E K+ +++ IG RI EG N +QL
Sbjct: 245 REQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
Query: 300 SGLLARLCIV 309
S LLA++ I+
Sbjct: 305 SALLAKMGIL 314
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 191/311 (61%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT D+ G++D RLK + ++PN++ SG G+GKTT + +A+ L G S+
Sbjct: 17 VEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYGDSW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+ LELNAS++RGID VR++IK FA+ PG +I+ LDEADS+T AQ ALRR
Sbjct: 77 QSHFLELNASDERGIDVVRDQIKNFARHD----PGAVDFQIIFLDEADSLTSDAQAALRR 132
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME +S+ TRF ++CN S KII+PIQSRCA+ R+ + D + V + ++E I T+D
Sbjct: 133 TMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGIETTDD 192
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G+EA+V+ A GDMR+A+N LQ+ V E VF + P +KEM+ + ++G+
Sbjct: 193 GIEALVYAADGDMRKAINALQAAAVMGEQVDEESVFVITSTARPEDIKEMVRHAIDGDFT 252
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S I+ L + G A DII + R D+ + + +++ +G RI+EG N +
Sbjct: 253 RSRSILDELLTERGMAGGDIIDQLHRSIWEFDLDDDDAVRVLERVGEADFRITEGANERV 312
Query: 298 QLSGLLARLCI 308
QL +LA L +
Sbjct: 313 QLEAMLASLAL 323
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 30 IEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDDW 89
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 90 RENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRTM 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT+ + ++V EI ++I T+DG+
Sbjct: 148 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDGV 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V++M+ + G+ +
Sbjct: 208 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEQMVDQAIAGDFTAA 267
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A DIPE + +++++G V RI+EG N LQL
Sbjct: 268 RASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLEQLGEVDFRITEGANERLQL 327
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 328 EAMLASLAL 336
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 187/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E+I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEFTTA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGANEQVQ 314
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 200/310 (64%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T S++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + +I EKEN++ G+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ +T E V+KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFVEA 244
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +++L G + EDI+ +FR LDI E K+ +++ IG RI EG N +QL
Sbjct: 245 REQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
Query: 300 SGLLARLCIV 309
S LLA++ I+
Sbjct: 305 SALLAKMGIL 314
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 196/318 (61%), Gaps = 9/318 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T +IV E+ V RLK F N+P+++ +GPPG GKTT CLA L G +++
Sbjct: 15 EKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFGENYR 74
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++RGID +R+K+K FA+ +VT +P KIV+LDEAD+MT AQQALRR
Sbjct: 75 QYMLELNASDERGIDVIRSKVKEFARTRVTANIP---FKIVLLDEADNMTADAQQALRRL 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF L N KIIEPIQSRCA+ R+ L ++S++ I +E + +
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKVEVDEEA 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI ++GDMR+A+N LQ+ G VT + V+KV HP +++M+ + GN D
Sbjct: 192 LEAIHDLSEGDMRRAINILQAA-AALGRVTVDSVYKVVGLAHPREIRQMIQLALAGNFTD 250
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + + L G + D+I + R + + IP+ K+ I G + R+ EG +
Sbjct: 251 AREKLRKLMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADDE 310
Query: 297 LQLSGLLARLCIVGSKNK 314
+QL+ LARL +G K K
Sbjct: 311 IQLNAFLARLAFLGKKLK 328
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 186/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEGIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ N ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIERMVRNAIDGEFTAA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGANEQVQ 314
>gi|167396191|ref|XP_001741947.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165893256|gb|EDR21578.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 315
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 199/307 (64%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +I+GN D ++ LK F S P++++ G PG+GKTT+I CLA LL +
Sbjct: 10 VEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLKDRY 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGI+T+R+ IK F ++K+ LP KIVILDEADSMT A QALRRTM
Sbjct: 70 KEAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRF LACN EKIIEPIQSRCA L + L + +L++++ EI EN+ +D +
Sbjct: 130 EIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIARCENVDIEDDAV 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ ++GDMR+A+N LQ+ G +T E V++ D P + + + C++ + +
Sbjct: 190 KALEIVSEGDMRKAINALQTCAIIQGRITKEQVYQRNDLPSADNIIQAIQLCLKKDFDGA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
I + +LG+ DI+ I R+ +D E +++ + EI L VNS +Q+
Sbjct: 250 LIEIKKVQQLGFDGNDIMDMIVRMFSKIDASEEIRVR-LYEIAAPFL--IHRVNSNVQVY 306
Query: 301 GLLARLC 307
GL+A++C
Sbjct: 307 GLMAKIC 313
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 199/313 (63%), Gaps = 8/313 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ ++VG+++ ++RLK + ++P+++ SG PGVGKTT LCLA+ L G ++
Sbjct: 6 VEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNTW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 KENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + EI EKE+I+ G+
Sbjct: 125 EKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSGM 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ ++ ++KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFVEA 244
Query: 241 YKIIHHLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
LYKL G + EDII IFR L+I E K+ +++ IG RI EG N
Sbjct: 245 R---EQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANER 301
Query: 297 LQLSGLLARLCIV 309
+QLS LLA++ I+
Sbjct: 302 IQLSALLAKMGIL 314
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 200/317 (63%), Gaps = 8/317 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DI+ E+ ER+K F +GN+P+++ GPPG GKTT L +AR L G ++
Sbjct: 9 VEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDAW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ VLELNAS++RGI T+R ++K FA+ T P G+ +K+VILDEAD+MT AQQALRR
Sbjct: 69 RENVLELNASDERGITTIRERVKEFAR---TAPMGKAPYKLVILDEADNMTSDAQQALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+N TRF L N +II+PIQSRCAM R++ L +L ++ EI KE + TN+
Sbjct: 126 MMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGVKVTNE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
LEAI +QGDMR+A+N LQ+ +T E ++K P + +++ G+ +
Sbjct: 186 ALEAIWDVSQGDMRKAINTLQAAAATAKEITPEVIYKTVGYIEPKDIVDLVNTVFSGDFV 245
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
K K+ +Y+ G + +I+ I R + +++P+ K+ I + ++ R++EG +
Sbjct: 246 KARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYRLTEGSDE 305
Query: 296 LLQLSGLLARLCIVGSK 312
+QLS LA+L ++G K
Sbjct: 306 EIQLSAFLAKLMLIGKK 322
>gi|67470376|ref|XP_651156.1| Activator 1 40 kDa subunit [Entamoeba histolytica HM-1:IMSS]
gi|56467854|gb|EAL45769.1| Activator 1 40 kDa subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710456|gb|EMD49526.1| activator 1 40 kDa subunit, putative [Entamoeba histolytica KU27]
Length = 315
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 198/307 (64%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +I+GN D ++ LK F S P++++ G PG+GKTT+I CLA LL +
Sbjct: 10 VEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLKDRY 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS++RGI+T+R+ IK F ++K+ LP KIVILDEADSMT A QALRRTM
Sbjct: 70 KDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRF LACN EKIIEPIQSRCA L + L + +L++++ EI E + +D +
Sbjct: 130 EIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIEDDAV 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ ++GDMR+A+N LQ+ G +T E V++ D P + + + C++ + +
Sbjct: 190 KALEIVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADNIIQAIQLCLKKDFDGA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
I + +LG+ DII I R+ +D E +++ + EI L VNS +Q+
Sbjct: 250 LIEIKKVQQLGFDGNDIIDMIVRMFSKIDASEEIRVR-LYEIAAPFL--IHRVNSNVQVY 306
Query: 301 GLLARLC 307
GL+A++C
Sbjct: 307 GLMAKIC 313
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 187/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E+I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEFTAA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQVQ 314
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 187/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E+I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEFTTA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLGEREAVRLMERIGEADYRISEGANEQVQ 314
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 187/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E+I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEFTAA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQVQ 314
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 187/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E+I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAEDIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEFTAA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQVQ 314
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 194/316 (61%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T DIV + ++RLK F N+P+++ +GPPG GKTT L L L G ++
Sbjct: 12 EKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYV 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+ LELNAS++RGID +RNK+K FA+ T+ PG K+V+LDEAD+MT AQQALRRT
Sbjct: 72 EYFLELNASDERGIDVIRNKVKEFAR---TVIPGNVPFKVVLLDEADNMTADAQQALRRT 128
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TRF LACN KIIEPIQSR A+ R+ L ++++++ I + E +
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKA 188
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I GDMR+++N LQ+ + +G ++ E VFKV P V+EM+ ++G
Sbjct: 189 LETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQ 247
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ L G + EDII I R + L I E L++ ++ IG RI EG +
Sbjct: 248 AREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDE 307
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LLA++ I G+K
Sbjct: 308 IQLSALLAKMAIYGNK 323
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP++ D+ G+E+ V RL+ + ++P+++ +GP GVGKT + +AR L G +
Sbjct: 19 IEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGEDW 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 79 REHFLELNASDERGIDVVRDRIKNFA--RSSFGGVEYRIIFLDEADALTSDAQSALRRTM 136
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R+ +L+D + ++ EI E E IS T+DG+
Sbjct: 137 EQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDGV 196
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+ M+ + G+ +
Sbjct: 197 DALVYAAAGDMRKAINGLQAAAVMGEEVDEEAVFAITSTARPEEVERMVDQAIGGDFTAA 256
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A D+ E + +++ +G V RI+EG N LQL
Sbjct: 257 RATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERLQL 316
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 317 EAMLAHLAL 325
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ DI G+ D V RLK + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 QENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT + ++V EI E+I+ T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIEAQVREIAATEDIAVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+ M+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A D+PE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 193/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +DI G+ D V RLK + ++P+++ +GP G GKTT +AR + +
Sbjct: 50 IEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDDW 109
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 110 QENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRTM 167
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT + ++V EI E+I+ T+DG+
Sbjct: 168 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDGV 227
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+ M+ + ++G+ +
Sbjct: 228 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTAA 287
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A D+PE + +++ +G V RI+EG N LQL
Sbjct: 288 RAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQL 347
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 348 EAMLASLAL 356
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT SD+VG+E VERL+ + ++ +++ +GP G GKTT+ +AR L G +
Sbjct: 14 IEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGDDW 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 74 QEHFLELNASDERGIDVVRDRIKSFA--RTSFGGVDYRIIFLDEADALTSDAQSALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF ++CN S +II+PIQSRCA+ R++ L D + +++ I ++E I T+DG+
Sbjct: 132 EQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGIELTDDGV 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P ++ M+ + ++G+ +
Sbjct: 192 DALVYAAGGDMRKAINGLQAASVSGDVVDEEAVFAITSTARPEVIQGMVQDAIDGDFTAA 251
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A DII + R D+P+ + I+ +G RI+EG N +QL
Sbjct: 252 RSQLDDLITDEGIAGGDIIDQLHRSIWEFDVPDEQAVRILDRVGETDYRITEGANERIQL 311
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 312 EAMLASLSL 320
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 196/316 (62%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ +IV ++ VERLK F N+P+++ +GPPG GKTT L L R L G +++
Sbjct: 9 EKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNNYR 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
LELNAS++RGID +RNK+K FA+ + +P K+++LDEAD+MT AQQALRRT
Sbjct: 69 QYFLELNASDERGIDVIRNKVKEFARTVASNNVP---FKVILLDEADNMTADAQQALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF LACN KIIEPIQSR A+ R+ L +++++I+I + E + G
Sbjct: 126 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKG 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
+E I QGDMR+A+N +Q+ + +G +T E V+KV P ++EML + G ++
Sbjct: 186 IETIFDITQGDMRKAINVIQAA-SAYGKITVETVYKVLGLAQPKEIREMLHLALSGKFLQ 244
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
K+ L G + EDII + + + IP+ LK+ ++ G V RI EG +
Sbjct: 245 ARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDE 304
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LA+L + K
Sbjct: 305 IQLSAFLAKLALHAEK 320
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 191/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ DI G+E+ V RL + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYEDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 QENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R+ +LTD + ++V EI +E I T+DG+
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIATEEGIELTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+ +N LQ+ V + VF + P V+EM+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKGINGLQAAAVMGETVDEDTVFAITSTARPEEVEEMVDHAIDGDFTAA 257
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|407040723|gb|EKE40291.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 315
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 198/307 (64%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +I+GN D ++ LK F S P++++ G PG+GKTT+I CLA LL +
Sbjct: 10 VEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLKDRY 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNAS++RGI+T+R+ IK F ++K+ LP KIVILDEADSMT A QALRRTM
Sbjct: 70 KDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S TTRF LACN EKIIEPIQSRCA L + L + +L++++ EI E + +D +
Sbjct: 130 EIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIEDDAV 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ ++GDMR+A+N LQ+ G +T E V++ D P + + + C++ + +
Sbjct: 190 KALEIVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADNIIQAIQLCLKKDFDSA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
I + +LG+ D++ I R+ +D E +++ + EI L VNS +Q+
Sbjct: 250 LIEIKKVQQLGFDGNDVMDMIVRMFSKIDASEEIRVR-LYEIAAPFL--IHRVNSNVQVY 306
Query: 301 GLLARLC 307
GL+A++C
Sbjct: 307 GLMAKIC 313
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 186/300 (62%), Gaps = 3/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D+ G ED V+RL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 17 IEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++I+ LDEADS+T AQ ALRRTM
Sbjct: 77 RGNFLELNASDERGIDVVRDRIKNFA--RASFGGYDYRIIFLDEADSLTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V I E E I T DGL
Sbjct: 135 EQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKD 239
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ + ++G +
Sbjct: 195 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYLITSTARPEDIEEMVQSAIDGEFLAA 254
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K+ L G A DII + R D+ E + +++ IG RI+EG N +QL
Sbjct: 255 RSKLETLLVDTGMAGGDIIDQLHRSVWEFDLDERATVRLMERIGEADYRITEGANEQVQL 314
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 194/316 (61%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T DIV + ++RLK F N+P+++ +GPPG GKTT L L L G ++
Sbjct: 12 EKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYT 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+ LELNAS++RGID +RNK+K FA+ T+ PG K+V+LDEAD+MT AQQALRRT
Sbjct: 72 EYFLELNASDERGIDVIRNKVKEFAR---TVIPGDIPFKVVLLDEADNMTADAQQALRRT 128
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TRF LACN KIIEPIQSR A+ R+ L +++++I I + E +
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKA 188
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I GDMR+++N LQ+ + +G ++ E VFKV P V+EM+ ++G
Sbjct: 189 LETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQ 247
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ L G + EDI+ I R + + I E L++ ++ IG RI EG +
Sbjct: 248 ARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDE 307
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LLA++ I G+K
Sbjct: 308 IQLSALLAKMAIYGNK 323
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ DI G+ D V RLK + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 QENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +L+ + ++V EI E+I+ T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQVREIAATEDIAVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+ M+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEAMVDHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A D+PE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 187/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQTF D+ G +D VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++++ LDEADS+T+ AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E+I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V + V+ + P ++EM+ ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEVVDEDAVYMITSTARPEDIEEMVRAAIDGEFTAA 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 256 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQVQ 314
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 194/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGTGKTTAAQSIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +L++ + +++ EI E E I+ T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQIREIAEIEGITVTDDGI 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+ M+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKAINALQAAAVMGETVDEETVFAITSTARPEEVEAMVDHAIDGDFTAA 257
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 198/320 (61%), Gaps = 9/320 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T ++V ++ V RLK F N+P+++ +GPPG GKTT CLA L G +++
Sbjct: 18 EKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGDNYR 77
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++RGID +R+K+K FA+ +V +P KI++LDEAD+MT AQQALRR
Sbjct: 78 QYMLELNASDERGIDVIRSKVKEFARTRVAGEVP---FKIILLDEADNMTADAQQALRRL 134
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF L N KIIEPIQSRCA+ R+ L+ ++ ++ I EKEN+ + +
Sbjct: 135 MELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENVKYNTEA 194
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I ++GDMR+A+N LQ+ + G VT E V+KV HP V++ML + GN +
Sbjct: 195 LETIHELSEGDMRKAINILQAA-SALGEVTVEAVYKVVGLAHPKEVRQMLQLALSGNFTE 253
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDI--PEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ + G + DII I R + DI + ++ I G + R+ EG +
Sbjct: 254 ARSKLRELMLNYGLSGLDIIRQIHREIFSSDIKLSDEARIMIADYAGEIQFRLVEGADDE 313
Query: 297 LQLSGLLARLCIVGSKNKKT 316
+QL+ LARL +G K + T
Sbjct: 314 IQLNAFLARLAFMGKKFRPT 333
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 195/313 (62%), Gaps = 3/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP++ D+ G+E+ V RL+ + ++P+++ +GP GVGKT + +AR L G +
Sbjct: 19 IEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGEDW 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + +++I+ LDEAD++T AQ ALRRTM
Sbjct: 79 REHFLELNASDERGIDVVRDRIKNFA--RSSFGGVKYRIIFLDEADALTSDAQSALRRTM 136
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R+ +L+D + ++ EI E E IS T+DG+
Sbjct: 137 EQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDGV 196
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V VF + P V++M+ + G+ +
Sbjct: 197 DALVYAAAGDMRKAINGLQAAAVMGEEVDEAAVFAITSTARPEEVEKMVDQAIGGDFTAA 256
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A D+I + R A D+ E + +++ +G V RI+EG N LQL
Sbjct: 257 RATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERLQL 316
Query: 300 SGLLARLCIVGSK 312
+LA L + +
Sbjct: 317 EAMLAHLALASDE 329
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 186/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D+ G ED VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 18 IEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + + ++I+ LDEADS+T AQ ALRRTM
Sbjct: 78 RGNFLELNASDERGIDVVRDRIKNFA--RSSFGGFDYRIIFLDEADSLTSDAQSALRRTM 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + +V +I E E I T DGL
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEIELTEDGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKD 239
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++EM+ + ++G +
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATTGEIVDEEAVYLITSTARPEDIEEMVQSAIDGEFLTA 255
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K+ L G A DII + R D+ E + +++ IG RI+EG N +Q
Sbjct: 256 RSKLETLLVDTGMAGGDIIDQLHRSVWDFDLDERTTVRLMERIGEADYRITEGANEQVQ 314
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 187/309 (60%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT +IVG ED VERL+ + ++ + + SGP G+GKTT+ +AR L G +
Sbjct: 19 IEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYGDDW 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+D LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 79 RDNFLELNASDERGIDVVRDRIKNFA--RTSFGGYEYRIIFLDEADALTSDAQGALRRTM 136
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R+ L+D + ++ I +E I T+DGL
Sbjct: 137 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAGEEGIEFTDDGL 196
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P +KEM+ + G+ +
Sbjct: 197 DALVYAADGDMRKAINALQAASVTGDVVDEEAVYALTSTAKPEEIKEMVDQALAGDFTAA 256
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R D+ + + ++ IG RI+ G N +QL
Sbjct: 257 RSTLDRLLTEEGIAGGDVIDQLHRSVWEFDLDDEAAVRLLDRIGETEYRITTGANERIQL 316
Query: 300 SGLLARLCI 308
LLA + +
Sbjct: 317 EALLASVAL 325
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 192/317 (60%), Gaps = 6/317 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP +DIVG +D VERL + SGN+P+++ +G GVGKTT + LAR G S+
Sbjct: 9 IEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDSW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 QMNFRELNASDERGIDVVRNQIKEFAR---TRPAGDAAFKILFLDEADALTTDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ L + ++ I +E++ T +
Sbjct: 126 TMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTPE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++A+V+ AQGDMR+A+N LQ + A V+ + P + E+L + G+
Sbjct: 186 AMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDFD 245
Query: 239 DSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ ++ L + G AP ++I +R D+ LK+ +I +G R+SEG +S +
Sbjct: 246 GAEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSDI 305
Query: 298 QLSGLLARLCIVGSKNK 314
Q+ L+AR + G++ +
Sbjct: 306 QMEALIARFVLAGTRKR 322
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 193/316 (61%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T DIV + ++RLK F N+P+++ +GPPG GKTT L L L G ++
Sbjct: 12 EKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYV 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+ LELNAS++RGID +RNK+K FA+ T+ P K+V+LDEAD+MT AQQALRRT
Sbjct: 72 EYFLELNASDERGIDVIRNKVKEFAR---TVIPSNVPFKVVLLDEADNMTADAQQALRRT 128
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TRF LACN KIIEPIQSR A+ R+ L ++++++ I + E +
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKA 188
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I GDMR+++N LQ+ + +G ++ E VFKV P V+EM+ ++G
Sbjct: 189 LETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQ 247
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ L G + EDII I R + L I E L++ ++ IG RI EG +
Sbjct: 248 AREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDE 307
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LLA++ I G+K
Sbjct: 308 IQLSALLAKMAIYGNK 323
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 190/299 (63%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT DI G E+T+ERL+ + + G +P+++ SGP G+GKT++ +AR + G +
Sbjct: 17 IEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA + ++I+ LDEADS+T AQ ALRRTM
Sbjct: 77 RGNFLELNASDERGIDVVRDRIKSFA--RSAFGGHDYRIIFLDEADSLTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + +++ EI E E I T++G
Sbjct: 135 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIEAIEVTDEGF 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+ +N+LQ+ V AE V+ V P ++EM+ V+G+ +
Sbjct: 195 DALVYAANGDMRRGINSLQAAATTGDVVDAEAVYAVTATARPEDIEEMVAAAVDGDFPKA 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ L +G A DII + R A ++ + + +++ +G RI+EG N +Q
Sbjct: 255 RATLDTLLTDVGMAGGDIIDQLHRSAWEFELSDRAVVRLMERLGEADYRIAEGANEQVQ 313
>gi|410670416|ref|YP_006922787.1| replication factor C [Methanolobus psychrophilus R15]
gi|409169544|gb|AFV23419.1| replication factor C [Methanolobus psychrophilus R15]
Length = 301
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 191/304 (62%), Gaps = 6/304 (1%)
Query: 12 IVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71
+VG +TVERLK + + N+P+++ SGPPGVGKT T + +AR L G S+++ ELNAS+
Sbjct: 1 MVGQTETVERLKSYIKTRNLPHLLFSGPPGVGKTATSVSIARELFGDSWRENFTELNASD 60
Query: 72 DRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRF 129
+RGID VR KIK FA+ T P G KI+ LDEAD++T AQ ALRRTME Y+N RF
Sbjct: 61 ERGIDVVRTKIKNFAK---TTPIGGADFKIIFLDEADALTSDAQSALRRTMERYTNNCRF 117
Query: 130 ALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG 189
L+CN S KIIEPIQSRCA+ R+ L+D + +V + + E + DG++AI + AQG
Sbjct: 118 ILSCNYSSKIIEPIQSRCAVYRFRPLSDEAVAGRVRFVAQNEGLDIAEDGVDAIKYVAQG 177
Query: 190 DMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIH-HLY 248
DMR+A+N+LQ+ + + ++K+ P V+E++ + GN + K + L
Sbjct: 178 DMRKAINSLQAAALIADTIHRDAIYKITATARPEQVRELIETALSGNFTAARKHLDVFLL 237
Query: 249 KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
+ G + ED+IG ++R ++IPE + +I IG + R++EG N +QL LLA +
Sbjct: 238 EQGLSGEDVIGQVYRAIFEINIPEKKMVELIDVIGEIDFRLTEGANERIQLESLLAHFAL 297
Query: 309 VGSK 312
G +
Sbjct: 298 SGKE 301
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 194/317 (61%), Gaps = 9/317 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T +IV E+ V RL F N+P+++ +GPPG GKTT L LA L G ++
Sbjct: 7 EKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGDEWR 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+LELNAS++RGI +R+K+K FA+ K+ PG KIVILDEAD+MT AQQALRR
Sbjct: 67 RYLLELNASDERGIAVIRSKVKEFARSKL---PGDIPFKIVILDEADNMTADAQQALRRI 123
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y TTRF L N KII+PIQSRCA R+ L + S++ ICE+E + DG
Sbjct: 124 MEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKVKCDEDG 183
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L+ I + GDMR+A+N LQS + G VT V+KV HP V+E++ + G +
Sbjct: 184 LDVIYELSGGDMRKAINILQSA-SALGEVTVSNVYKVVGLAHPKEVREIITLALSGKFIE 242
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ +H+L + G + DII + R + L IPE +++ + IG + RI EG +
Sbjct: 243 ARDKLHNLMIVYGLSGVDIIKQMHREIFSADLKIPEDIRVILADYIGEIQFRIVEGADDE 302
Query: 297 LQLSGLLARLCIVGSKN 313
+QLS LLA++ ++G K
Sbjct: 303 IQLSALLAKMALLGKKE 319
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 191/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ DI G+ D V RLK + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 QENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LT + ++V EI E+I+ T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V VF + P V+ M+ + ++G+ +
Sbjct: 198 DALVYAADGDMRKAINALQAAAVMGETVDEGTVFAITATARPEEVEAMVEHAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A D+PE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 196/318 (61%), Gaps = 6/318 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP + D+VG E+ V+RLK + S NVP+++ SGPPGVGKT + + R L G +
Sbjct: 52 IEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGEEW 111
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +ELNAS++RGID VR+K+K FA+ L K++ LDEAD++T+ AQ ALRRTM
Sbjct: 112 RGNFIELNASDERGIDVVRHKVKDFAR-IAPLGNAEFKVIFLDEADALTNDAQSALRRTM 170
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN S KIIEPIQSRCA+ R+ L++ + ++ I E E + T +G+
Sbjct: 171 ERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGVKVTPEGM 230
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AIV+ A+GDMR+A+N LQ+ VT E ++++ P +++++ + GN +
Sbjct: 231 RAIVYVARGDMRKAINALQAASLMEESVTEETIYQITATARPEQIRDLMKTALAGNFTQA 290
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTL----DIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ L + G + ED+I I R +L ++ P + ++ IG + R++EG N
Sbjct: 291 RSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGEIDFRMTEGANE 350
Query: 296 LLQLSGLLARLCIVGSKN 313
+QL LLA + G++
Sbjct: 351 RIQLEALLAYFALAGTEG 368
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 194/317 (61%), Gaps = 7/317 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T +IV E+ V RLK F N+P+++ GPPG GKTT LA L G +++
Sbjct: 12 EKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFGENYR 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG-RHKIVILDEADSMTDGAQQALRRTM 120
+LELNAS++RGI+T+R K+K FA+ + PPG KIV+LDEAD+MT AQQALRR M
Sbjct: 72 QYMLELNASDERGIETIRTKVKEFARSRT--PPGIPFKIVLLDEADNMTADAQQALRRLM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ +TRF L N KIIEPIQSRCA+ R+ L +++++ ICE+E + + L
Sbjct: 130 EMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGCQYDEEAL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E I ++GDMR+A+N LQ+ G VT E V+KV HP ++E++ ++G D+
Sbjct: 190 ETIYEISEGDMRRAINILQAA-AALGKVTVEAVYKVVGLAHPKEIREIIKLALDGRFTDA 248
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K + L G + D+I I + L +P+ +++ I G + R+ EG + +
Sbjct: 249 RKKLRELMINYGLSGTDVIKQIHKEVFGPELKLPDEVRVLIADYAGEIQFRLVEGADDEI 308
Query: 298 QLSGLLARLCIVGSKNK 314
QL+ LA L ++G K K
Sbjct: 309 QLNAFLAWLAMLGRKLK 325
>gi|299472821|emb|CBN80389.1| EsV-1-87 [Ectocarpus siliculosus]
Length = 340
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 196/312 (62%), Gaps = 11/312 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLGPS 59
+EKYRP FS++VGNE ++ L ++ G ++PN++I GP G GKT + L + ++ +
Sbjct: 23 VEKYRPLCFSEVVGNEKSISLLSNLATKGLSIPNLLICGPSGCGKTACVDILCKAMIPEN 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGRHKIVILDEADSMTDGAQQALR 117
+L L++ ++RGID VR +K FA+ +V P KIV+LDEADSMT GA QALR
Sbjct: 83 RGARILRLSSFDERGIDNVRTTVKNFARGRVGTEATPAIAKIVVLDEADSMTPGAFQALR 142
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R M++YS+TTRF + CNNS KIIEPIQSRCA+LR++K+ DAQL +V ++C+ + +
Sbjct: 143 RIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVEDAQLCLRVRQVCDMAGVEYDL 202
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKE---MLLNCVE 234
G+ A+ A GD+R A+N+L S +GF +T+E V++ C P P + E +L N
Sbjct: 203 GGIGALACVADGDLRSAINSLSSIVSGFRRLTSENVYRTCRSPQPAKIVEIVDLLRN--R 260
Query: 235 GNMKDSYKIIHHLYKL---GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
G ++ K + L GY+P DI+ + FR LD+ E ++ I + IG V R++
Sbjct: 261 GGYVEACKKLRGLCGKGGEGYSPMDILASFFRALSVLDVRESQRIEIAKVIGLVQNRVAS 320
Query: 292 GVNSLLQLSGLL 303
G +S LQL+ +L
Sbjct: 321 GASSYLQLAAML 332
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ V RLK + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R+ +LT+ + +++ EI +E I T+DG+
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQIREIATEEGIEVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+++ A GDMR+A+N LQ+ V E VF + P V+ M+ ++G+ +
Sbjct: 198 DALIYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVEAMVDRAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A DIPE + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWQFDIPEKATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 198/310 (63%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + +I EKE ++ G+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ VT E V+KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFVEA 244
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +++L G + EDI+ +FR LDI E K+ +++ IG RI EG N +QL
Sbjct: 245 REQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
Query: 300 SGLLARLCIV 309
S LLA++ I+
Sbjct: 305 SALLAKMGIL 314
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 187/300 (62%), Gaps = 5/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQ+ DI G E+ VERL+ + ++P+++ SGP GVGKTT +AR + G +
Sbjct: 19 IEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDEADS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + ++ EI E I T++G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVAAQTREIAAAEGIEVTDEG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ N +EG+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTNALEGDFSR 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R D+ E +++++ IG RI+EG N +Q
Sbjct: 256 ARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQVQ 315
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 198/310 (63%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + +I EKE ++ G+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ VT E V+KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFVEA 244
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +++L G + EDI+ +FR LDI E K+ +++ IG RI EG N +QL
Sbjct: 245 KEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
Query: 300 SGLLARLCIV 309
S LLA++ I+
Sbjct: 305 SALLAKMGIL 314
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 191/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+ED V RL+ + ++P+++ +GP G GKTT +AR + +
Sbjct: 20 IEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAIAREVYDDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R+ +LT+ L +++ EI +E I T+DG+
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQIREIATEEGIEVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+++ A GDMR+A+N LQ+ V E VF + P V+ M+ ++G+ +
Sbjct: 198 DALIYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVEAMVDQAIDGDFTAA 257
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R A DI E + +++ +G V RI+EG N LQL
Sbjct: 258 RAALEDLLTERGLAGGDVIDQLHRSAWQFDISETATVRLLERLGEVDYRITEGANERLQL 317
Query: 300 SGLLARLCI 308
+LA L +
Sbjct: 318 EAMLASLAL 326
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQT DI G E+ VERL+ + + +VP+++ SGP GVGKTT +AR + G +
Sbjct: 19 IEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDE+DS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDESDSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + V EI E I T+ G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ + + G+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGDFAR 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R ++ E + +++ IG RI+EG N +Q
Sbjct: 256 ARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQVQ 315
Query: 299 LSGLLARLCI 308
L LLA L +
Sbjct: 316 LESLLAALTL 325
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 187/300 (62%), Gaps = 5/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQ+ DI G E+ VERL+ + ++P+++ SGP GVGKTT +AR + G +
Sbjct: 19 IEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYGDDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDEADS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+DA + ++ EI E I T+ G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDAG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ N ++G+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTNALDGDFTR 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R D+ E +++++ IG RI+EG N +Q
Sbjct: 256 ARATLDQLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQVQ 315
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 192/319 (60%), Gaps = 6/319 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP S++VG E RLK + ++P+++ +GP G+GKTT+ L LAR + G +
Sbjct: 6 IEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFGELW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH--KIVILDEADSMTDGAQQALRR 118
+ + ELNAS++RGID VR KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 66 QHNLHELNASDERGIDVVRGKIKEFAR---TAPLGEKGFKIIFLDEADALTGAAQAALRR 122
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME YS T RF ++CN S KII+PIQSRCA+ R+ + L + + KEN+ T +
Sbjct: 123 TMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENVKVTKE 182
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
E++ + AQGD+R+A+N LQ VT + V++ P VK+ L + + GN
Sbjct: 183 AFESLTYLAQGDLRRAINGLQMAAAAKTEVTPDVVYQAVAAARPEEVKDALESALAGNFS 242
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + + L G A ED++ + R + L+IP+ +K+ +I+++ R+SEG NS +
Sbjct: 243 TAREKLDTLQITYGLAGEDVLRQMHRTVRDLEIPDNIKVLMIEKMAEADFRLSEGANSRI 302
Query: 298 QLSGLLARLCIVGSKNKKT 316
Q+ ++A I+G KT
Sbjct: 303 QIEAVVASFAILGRNLNKT 321
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 189/299 (63%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +I G+E+ + RLK + ++P+I+ +GP GVGKT + +AR + G +
Sbjct: 20 IEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASSQAIAREIYGDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 80 RENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYNYRIIFLDEADALTSDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S +II+PIQSRCA+ R+ +LTD + ++V EI + E I+ T+DG+
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIADTEGIAVTDDGV 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E VF + P V+ M+ + + G+ +
Sbjct: 198 DALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITSTARPEEVEAMVDHAIAGDFTAA 257
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ L + G A D+I + R A DIPE + +++ +G V RI+EG N LQ
Sbjct: 258 RAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQ 316
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 194/315 (61%), Gaps = 5/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ DIV + VERLK F N+P+++ +GPPG GKTT LA L G ++
Sbjct: 10 VEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGENY 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS++RGI+ +R K+K FA+ + T P KIV+LDEAD+MT AQQALRR M
Sbjct: 70 RQYMLELNASDERGINVIREKVKEFARSR-TPPEIPFKIVLLDEADNMTSDAQQALRRLM 128
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+ TRF L N KII+PIQSRCA R+ L+ ++ ++ I E E + + + L
Sbjct: 129 ELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEAL 188
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI ++GDMR+A+N LQ+ + G VT + V++V P V+EML ++G+ +
Sbjct: 189 DAIYEISEGDMRKAINVLQAA-SYLGKVTVDAVYRVVGMAKPREVREMLATALKGDFTAA 247
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ + + G + ED+ I R + L +PE L++ +G VH R+ EG + +
Sbjct: 248 RSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVEGSDDDI 307
Query: 298 QLSGLLARLCIVGSK 312
QLS LA L ++ K
Sbjct: 308 QLSAFLAWLTMMSRK 322
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 184/299 (61%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D+ G E+ VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 20 IEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGID VR++IK FA + + ++I+ LDEADS+T+ AQ ALRRTM
Sbjct: 80 RGNFLELNASDQRGIDVVRDRIKNFA--RSSFGGHDYRIIFLDEADSLTNDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + + +I E I T DGL
Sbjct: 138 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAEGIELTEDGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P +++M+ + ++G +
Sbjct: 198 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEQMVRDAIDGEFTAA 257
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 258 RKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERIGEADYRISEGANEQVQ 316
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 191/317 (60%), Gaps = 6/317 (1%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ D++G++ RL + SGN+P+++ SGPPGVGKT + LAR L G ++
Sbjct: 9 EKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGETWH 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRT 119
+ELNAS++RGID VRN IK FA+ T P G + KI+ LDEAD++T AQ ALRRT
Sbjct: 69 SNFIELNASDERGIDVVRNNIKNFAR---TAPLGEAKFKIIFLDEADALTSDAQSALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME Y+ T RF ++CN S KIIEPIQSRCA+ R+ L + + + I + E + DG
Sbjct: 126 MERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+++ A+GDMR+A+N LQS +TA+ +++ P +++ML + G D
Sbjct: 186 MDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQFMD 245
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
S K+ L G + DII I+R L + E + ++++ IG R++EG + +Q
Sbjct: 246 SRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASERIQ 305
Query: 299 LSGLLARLCIVGSKNKK 315
+ LLA + G+ K
Sbjct: 306 IEALLAHFKMQGAARSK 322
>gi|365758549|gb|EHN00386.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 187
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 143/167 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGNSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LP GRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPQGRHKIIILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L +++EI
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEI 178
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 195/315 (61%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP +DIVG + VERL + +GN+P+++ +G GVGKTT + LAR S+
Sbjct: 9 IEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFFKDSW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 HMNFRELNASDERGIDVVRNQIKQFAR---TSPLGGAGFKILFLDEADALTPDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y++T RF L+CN S +II+PIQSRCA+ R+ L+ + +++ I E E ++ T +
Sbjct: 126 TMESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENEKLTITGE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++AI+ AQGDMR+A+N LQ +T + V+ + P ++++L + G+ +
Sbjct: 186 AIDAIIEIAQGDMRKAINALQGAAILSPEITGDMVYAITATARPDEIEDLLSTSLSGDFE 245
Query: 239 DSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ I+H L G AP ++I +R D+ E +++++I ++G R+SEG +S +
Sbjct: 246 GATAILHRLLNDRGIAPNELINQCYRALTRRDMEEDMRVALIDQLGTTDFRLSEGASSDI 305
Query: 298 QLSGLLARLCIVGSK 312
Q+ ++AR ++ K
Sbjct: 306 QMEAMIARFVLLARK 320
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAAEEDIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 255 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERVQL 314
Query: 300 SGLLARLC 307
+LA L
Sbjct: 315 EAMLASLA 322
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 192/316 (60%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T DIV + ++RLK F N+P+++ +GP G GKTT L L L G ++
Sbjct: 12 EKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGDNYV 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+ LELNAS++RGID +RNK+K FA+ T+ P K+V+LDEAD+MT AQQALRRT
Sbjct: 72 EYFLELNASDERGIDVIRNKVKEFAR---TVIPSNVPFKVVLLDEADNMTADAQQALRRT 128
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TRF LACN KIIEPIQSR A+ R+ L ++++++ I + E +
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKA 188
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I GDMR+++N LQ+ + +G ++ E VFKV P V+EM+ ++G
Sbjct: 189 LETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQ 247
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ L G + EDII I R + L I E L++ ++ IG RI EG +
Sbjct: 248 AREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDE 307
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LLA++ I G+K
Sbjct: 308 IQLSALLAKMAIYGNK 323
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 255 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERVQL 314
Query: 300 SGLLARLC 307
+LA L
Sbjct: 315 EAMLASLA 322
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 184/299 (61%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D+ G E+ VERL+ + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 20 IEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGID VR++IK FA + + ++I+ LDEADS+T+ AQ ALRRTM
Sbjct: 80 RGNFLELNASDQRGIDVVRDRIKNFA--RSSFGGHDYRIIFLDEADSLTNDAQSALRRTM 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + + +I + E I T DGL
Sbjct: 138 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGIELTEDGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ + ++G +
Sbjct: 198 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIETMVRDAIDGEFTAA 257
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 258 RKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERIGEADYRISEGANEQVQ 316
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 255 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERVQL 314
Query: 300 SGLLARLC 307
+LA L
Sbjct: 315 EAMLASLA 322
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 255 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIGDDAAVRVLERIGETDYRITRGANERVQL 314
Query: 300 SGLLARLC 307
+LA L
Sbjct: 315 EAMLASLA 322
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAQEDIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A D+I + R DI + + +++ IG RI+ G N +QL
Sbjct: 255 RATLDRLLTEEGIAGGDVIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERVQL 314
Query: 300 SGLLARLC 307
+LA L
Sbjct: 315 EAMLASLA 322
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 183/299 (61%), Gaps = 2/299 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT DI G E+ VERL+ + ++P+++ +GP GVGKTT+ +AR L G +
Sbjct: 20 IEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGDDW 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGID VR++IK FA+ P + I+ LDEADS+T+ AQ ALRRTM
Sbjct: 80 RGNFLELNASDERGIDVVRDRIKNFARSSFN-PERGYTIIFLDEADSLTNDAQSALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + + +I E E I T GL
Sbjct: 139 EEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGIELTEGGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P +++M+ ++G +
Sbjct: 199 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYLITSTARPEDIEKMVRAAIDGEFTAA 258
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 259 RKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERDAVHLMERIGEADYRISEGANEQVQ 317
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 192/315 (60%), Gaps = 2/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VG +D V RL+ + +GN+P+++ +G G+GKTT + LAR L G S+
Sbjct: 11 IEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFGDSW 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ E+NAS++RGID VRN+IK FA+ L K++ LDEAD++T AQ ALRRTM
Sbjct: 71 QMNFREMNASDERGIDVVRNQIKEFARTS-PLAGATFKVLFLDEADALTTDAQAALRRTM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ T RF L+CN S KII+PIQSRCA+ R+ L ++ ++ I E ++ T L
Sbjct: 130 ETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIEGLTVTEGAL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AIV+ A GDMR+A+N LQ + E ++++ P + E+L +EG ++
Sbjct: 190 DAIVYVASGDMRKAINALQGAAILRPEIDEEMIYEITATARPDEIDELLDLSMEGRFDEA 249
Query: 241 YKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L + G AP ++I +R D+P PLK+ +I +G R+SEG +S +Q+
Sbjct: 250 EQALSELIRGRGIAPNELINQCYRSLVRRDLPRPLKVRLIDALGETDFRLSEGASSDIQM 309
Query: 300 SGLLARLCIVGSKNK 314
LLA+ + +++
Sbjct: 310 EALLAKFVLAAEQHR 324
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGEDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E I T DGL
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEGIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 255 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIEDEAAVRVLERIGETDYRITRGANERVQL 314
Query: 300 SGLLARLC 307
+LA L
Sbjct: 315 EAMLASLA 322
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 37 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 97 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 154
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 155 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 214
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 215 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 274
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 275 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERVQL 334
Query: 300 SGLLARLC 307
+LA L
Sbjct: 335 EAMLASLA 342
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ +DIVG ++ VERL + SGN+P+++ +G GVGKTT + LAR S+
Sbjct: 9 IEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLAREFFRDSW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+ ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 QMNFRELNASDERGIDVVRNQIKQFAR---TTPLGEATFKILFLDEADALTTDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ L + +V I +E ++ T+
Sbjct: 126 TMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRRIASREGLTITDG 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++AIV+ AQGDMR+A+N LQ + + V+ + P + E+L + G+
Sbjct: 186 AMDAIVYIAQGDMRKAINALQGAAIINPAIDEKRVYSITSTARPEEIDELLSLSLTGDFD 245
Query: 239 DSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ ++ L++ G AP ++I ++R ++P LK+ +I +G R+SEG NS +
Sbjct: 246 GAESLLAQLLHERGIAPNELINQMYRALLKREMPRELKVRLIDHLGESDFRLSEGANSDI 305
Query: 298 QLSGLLARLCI 308
Q+ L+AR +
Sbjct: 306 QMEALVARFVL 316
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 190/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VG+ D ERL+ + ++P+++ +GP G GKT + + +A+ + G +
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGDDW 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + ++++ LDEAD++TD AQ ALRRTM
Sbjct: 73 QENFLELNASDQRGIDVVRDRIKNFA--RASFGGYDYRVIFLDEADALTDDAQSALRRTM 130
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S KII+PIQSRCA+ R++++ D + + + +I +E++ +T G+
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDLEYTEAGI 190
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P ++ M+ ++G+ +
Sbjct: 191 DALVYAADGDMRRAINALQAASATGDAVDEEVVYAITATARPEEIEGMVTEALDGDFTAA 250
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A DII I R + D+ E + ++ +G RI+EG N +QL
Sbjct: 251 RSTLDDLLTNRGLAGGDIIDQIHRSVWSFDVEEEAAVRLLDRLGEADFRIAEGANERVQL 310
Query: 300 SGLLARLCI 308
LLA + +
Sbjct: 311 EALLASVAL 319
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 99 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGEDW 158
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 159 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 216
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 217 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTEDGL 276
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 277 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 336
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 337 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERVQL 396
Query: 300 SGLLARLC 307
+LA L
Sbjct: 397 EAMLASLA 404
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 191/310 (61%), Gaps = 8/310 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T S+IVG ++ +ERLK + ++P+++ SG PG+GKTT LCLA+ L G +
Sbjct: 6 VEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGDDW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L +L + I E ENI+ G
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISENENITIEKSGS 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+++N LQ+ + + V+KV P +K+M+ + ++
Sbjct: 185 DAIIYVSEGDMRKSVNVLQTAAAVSNVIDEDIVYKVSSRARPDEIKKMIDLAINARFMEA 244
Query: 241 YKIIHHLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
LYKL G +DI+ +FR LDI E K+S+I+ I RI EG N
Sbjct: 245 R---EQLYKLMIDWGMGGQDILTQVFREVPYLDIEENEKVSLIEAIAECDFRIVEGGNDR 301
Query: 297 LQLSGLLARL 306
+QLS LLA+L
Sbjct: 302 IQLSALLAKL 311
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 183/299 (61%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT DI G E+ VERL + ++P+++ +GP GVGKTT+ +AR + G +
Sbjct: 70 IEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDDW 129
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGID VR++IK FA + + ++I+ LDEADS+T+ AQ ALRRTM
Sbjct: 130 RGNFLELNASDQRGIDVVRDRIKNFA--RSSFGGHDYRIIFLDEADSLTNDAQSALRRTM 187
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ L D + + +I E E I T DGL
Sbjct: 188 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETEEIELTEDGL 247
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N+LQ+ V E V+ + P +++M+ ++G +
Sbjct: 248 DALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEKMVRAAIDGEFTAA 307
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K + L G A DII + R D+ E + +++ IG RISEG N +Q
Sbjct: 308 RKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERAAVRLMERIGETDYRISEGANEQVQ 366
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 201/317 (63%), Gaps = 8/317 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DI+ E+ ER+K +GN+P+++ GPPG GKTT L +AR L G ++
Sbjct: 9 VEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDAW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ VLELNAS++RGI T+R ++K FA+ T P G+ +K++ILDEAD+MT AQQALRR
Sbjct: 69 RENVLELNASDERGITTIRERVKEFAR---TAPMGKAPYKLIILDEADNMTSDAQQALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+N TRF L N +II+PIQSRCAM R++ L +L ++ +I +E + T++
Sbjct: 126 MMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASREGVKVTDE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
LEAI +QGDMR+A+N LQ+ +T E V+K P + +++ + G+ +
Sbjct: 186 ALEAIWDISQGDMRKAINTLQAATATAREITPEVVYKTVGYIEPKDIVDLVNIALNGDFI 245
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ K+ +Y+ G + +I+ I R ++ +++P+ K+ I + ++ R++EG +
Sbjct: 246 RARDKLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADIDYRLTEGSDE 305
Query: 296 LLQLSGLLARLCIVGSK 312
+QLS LARL ++G K
Sbjct: 306 EIQLSAFLARLMLIGKK 322
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 204/322 (63%), Gaps = 17/322 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
IEKYRP + + G E+T+ERL + ++ N+P+++ SGPPGVGKT + + +AR + G
Sbjct: 16 IEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 75
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 117
+++ ELNAS++RGID VRNKIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 76 WRENFTELNASDERGIDIVRNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSALR 132
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTME +S+ RF L+CN S KIIEPIQSRCA+ R+ +L+D + ++ I +++++S T+
Sbjct: 133 RTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITD 192
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
G EA+++ AQGDMR+A+N+LQ+ + ++ E +++ +P +K ++ + G
Sbjct: 193 GGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIETALRG 252
Query: 236 NMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLD--------IPEPLKLSIIQEIGNVH 286
N + + K ++ LY+ G + EDI+G I+RV +D + E + ++ IG
Sbjct: 253 NFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETD 312
Query: 287 LRISEGVNSLLQLSGLLARLCI 308
R++EG + +QL LLA +
Sbjct: 313 FRLTEGASEKIQLEALLAHFAL 334
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 193/316 (61%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T DIV +D V+RLK F N+P+++ +GPPG GKTT+ L L L G ++
Sbjct: 8 EKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYGENYD 67
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
LELNAS++ GI+ +R K+K FA+ T+ PG K V+LDEAD+MT AQQALRRT
Sbjct: 68 QFFLELNASDENGINVIRTKVKDFAR---TVTPGNVPFKTVLLDEADNMTSDAQQALRRT 124
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ +TRF LACN KII+PIQSR A+ R+ L ++ ++ I ++E + +
Sbjct: 125 MELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKVQYDVKS 184
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE + GDMR+A+N LQ+ +G VT + V KV P ++EM+ ++G D
Sbjct: 185 LEVVYDVTGGDMRKAINVLQAAA-AYGKVTTDSVLKVLGLAQPKEIREMVKLALQGKFLD 243
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
S K++ + G + EDI+ + R + IPE L++ + +G V RI EG +
Sbjct: 244 SRSKLMSLIIDYGLSGEDIVKQVHRDIFSNEYQIPEELRVLMSDYLGEVEFRIIEGADDE 303
Query: 297 LQLSGLLARLCIVGSK 312
+QLS +LA+L I+G K
Sbjct: 304 IQLSAMLAKLAILGQK 319
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 187/311 (60%), Gaps = 2/311 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T +++VG RL + ++P+++ +GPPG GKTT L LAR + G +
Sbjct: 6 VEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGEHW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ + ELNAS++RGID VR KIK FA+ + G KI+ LDEAD++T AQ ALRRTM
Sbjct: 66 QHNLHELNASDERGIDVVRGKIKEFAR-TAPIGGGGFKIIFLDEADALTSAAQAALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS T RF L+CN S KIIEPIQSRCA+ R+ L + + I +E + +D
Sbjct: 125 EKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAY 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+ + AQGD+R+A+N+LQ +T+E V++ P V+E+L ++GN +
Sbjct: 185 EALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGNFAGA 244
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L G A EDI+ + R + L+IP+ K+ +I+++ V R+SEG + +Q+
Sbjct: 245 RERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATARIQI 304
Query: 300 SGLLARLCIVG 310
+A +VG
Sbjct: 305 EAAIAHFIVVG 315
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 200/323 (61%), Gaps = 13/323 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ +IV E+ V+RLK F + N+P+++ +GPPG GKTT L LA L G S+
Sbjct: 7 VEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGESW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D LELNAS++RGID +R++IK +A+ TLP G K+VILDEAD+MT AQQALRR
Sbjct: 67 RDNTLELNASDERGIDVIRSRIKDYAR---TLPIGDVPFKLVILDEADNMTGDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME++S TRF L N + KIIEPIQSRCA+ R+ L ++ I ++E I+ +
Sbjct: 124 TMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDG 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LEAI +QGD+R+A+N LQ+ +VT E V+ P V+EM+ + ++GN+
Sbjct: 184 ALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNLL 243
Query: 238 --KDSYKIIHHLYKLGYAPEDIIGNIFR---VAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+D +++ LY G + DII I R K++ + + ++ +G + RI EG
Sbjct: 244 EARDKLRLL--LYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEG 301
Query: 293 VNSLLQLSGLLARLCIVGSKNKK 315
+ +QL LL++L +V K K
Sbjct: 302 SDDEIQLMALLSKLALVSKKAAK 324
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 184/295 (62%), Gaps = 3/295 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT DIVG+E ERLK + + ++P+++ +GP GVGKTT +A+ + G +
Sbjct: 15 IEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDW 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 75 RENFLELNASDQRGIDVVRDRIKSFA--RASFGGYDHRIIFLDEADALTSDAQSALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R++ L DA + ++ I + E I T+DG+
Sbjct: 133 EQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGV 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ G V E V+ + P ++EM+ ++G+ +
Sbjct: 193 DALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDFTAA 252
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+ L +G A DII + R D+ E + +++ IG RI+ G +
Sbjct: 253 RSQLETLLTDVGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEADYRITAGAS 307
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 188/299 (62%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+T +D+VG+E+ V RL+ + + ++P+++ SGP GVGKTT+ + +AR + G +
Sbjct: 16 IEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGDDW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 76 RENFLELNASDERGIDVVRDRIKDFA--RTSFGGYDYRIIFLDEADALTSDAQSALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++N TRF L+CN S +II+PIQSRCA+ R+ L + + + + E E I T+DG+
Sbjct: 134 EQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENEGIEVTDDGV 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+ALN LQ+ G V E V+ + P ++ M+ ++G+ +
Sbjct: 194 DALVYAADGDMRKALNGLQAAATMEGAVDDEAVYGITATARPEEIEAMVERALDGDFTAA 253
Query: 241 -YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K+ L G D+I + R A D+ + + +++ +G RI++G N LQ
Sbjct: 254 RAKLDDLLTDAGLGGGDVIDQLHRSAWDFDLDDAATVRLLERVGETDYRITQGANERLQ 312
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 202/322 (62%), Gaps = 17/322 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
IEKYRP + + G ++T+ERLK + ++ N+P+++ SGPPGVGKT + + +AR + G
Sbjct: 16 IEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 75
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 117
+++ ELNAS++RGID VRNKIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 76 WRENFTELNASDERGIDIVRNKIKNFAK---TAPIGGAPFKIIFLDEADALTADAQSALR 132
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTME +S+ RF L+CN S KIIEPIQSRCA+ R+ +L+D + ++ I + +S T
Sbjct: 133 RTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITE 192
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
G EA+++ AQGDMR+A+N+LQ+ + ++ E +++ +P +K ++ + G
Sbjct: 193 GGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRG 252
Query: 236 NMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLD--------IPEPLKLSIIQEIGNVH 286
N + + K ++ LY+ G + EDI+G I+RV +D + E ++++ IG
Sbjct: 253 NFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETD 312
Query: 287 LRISEGVNSLLQLSGLLARLCI 308
R++EG + +QL LLA +
Sbjct: 313 FRLTEGASEKIQLEALLAHFAL 334
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 183/300 (61%), Gaps = 5/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQ+ DI G E VERL+ + ++P+++ SGP GVGKTT +AR + G +
Sbjct: 19 IEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGKTTAATAIAREVYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDEADS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+DA + + EI E I T+ G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAGQTREIAAAEGIEVTDAG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ + + G+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALAGDFAK 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R D+ E + +++ IG RI+EG N +Q
Sbjct: 256 ARATLDSLLTETGMAGGDVIDQLHRSVWEFDLSEREAVKLMERIGEADYRIAEGANEQVQ 315
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 186/300 (62%), Gaps = 5/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQT DI G E+ VERL+ + + +VP+++ SGP G+GKTT +AR + G +
Sbjct: 19 IEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDEADS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + V EI E+I T++G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTDEG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ + + G+
Sbjct: 196 IDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGDFAR 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R ++ E + +++ IG RI+EG N +Q
Sbjct: 256 ARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQVQ 315
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 189/295 (64%), Gaps = 3/295 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+T +++VG+E+ V RL+ + + ++P+++ SGP GVGKTT+ + +AR + G +
Sbjct: 16 IEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGDDW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 76 RENFLELNASDERGIDVVRDRIKDFA--RTSFGGYDYRIIFLDEADALTSDAQSALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++N TRF L+CN S +II+PIQSRCA+ R+ L + + V ++ E+E I T+DG+
Sbjct: 134 EQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAEREGIEVTDDGV 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+ALN LQ+ G V E V+ + P ++ M+ ++G+ +
Sbjct: 194 DALVYAADGDMRKALNGLQAAATTEGAVDDEAVYGITATARPEEIEAMVERALDGDFTAA 253
Query: 241 -YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
K+ L G D+I + R A + D+ + + +++ +G RI++G N
Sbjct: 254 RAKLDDLLTDAGLGGGDVIDQLHRSAWSFDLDDAATVRLLERVGETDYRITQGAN 308
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 193/318 (60%), Gaps = 9/318 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T ++V ++ V RLK F N+P+++ +GPPG GKTT CLA L G ++
Sbjct: 11 EKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDDYR 70
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++R I+ +R K+K FA+ +V +P KIV+LDEAD+MT AQQALRR
Sbjct: 71 KYMLELNASDERKIEVIRGKVKEFARARVVGDVP---FKIVLLDEADNMTADAQQALRRL 127
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+YS TTRF L N KIIEPIQSR A+ R++ L+ ++ ++ IC E I
Sbjct: 128 MELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIECAEKA 187
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I ++GDMR+A+N LQ T G V E V+KV HP V+EM+ + GN +
Sbjct: 188 LETIYELSEGDMRRAINILQ-TAAALGEVVEEAVYKVLGMAHPREVREMINTALAGNFTE 246
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ + + G + DI+ I R ++ + IP+ +++ I G + R+ EG +
Sbjct: 247 ARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFRLVEGADDE 306
Query: 297 LQLSGLLARLCIVGSKNK 314
+QL+ LARL ++G K K
Sbjct: 307 IQLNAFLARLALIGKKFK 324
>gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
Length = 309
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 198/312 (63%), Gaps = 9/312 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP D++GN+ TVE + + S ++P+++ +GPPG GKTT LAR LL PS
Sbjct: 5 VNKYRPNEVQDVIGNQMTVELVSLIIDSKDMPHLLFAGPPGTGKTTCAKILARKLL-PS- 62
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ +LELNAS++RGI+TVR IK FAQ+++ K++ILDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIETVRTTIKSFAQRRIK--DCSFKVIILDEADSMTTAAQQAMRRVM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++S+ RF L CN KI EPIQSRCA+LR++++ ++ +L ++ EI + E I + + L
Sbjct: 121 EVHSSECRFILICNTLTKIFEPIQSRCAILRFDRIENSMILERLREISKDEGIKISKEAL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ IV + GDMRQ+LN LQ+ + + Y+ K+ P P ++ +L + +++
Sbjct: 181 DLIVELSDGDMRQSLNILQACISSSETIDQGYIIKIIGLPSPKRIERVLERLLRNEAEEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
K+ ++ + P D+I + FR AK ++ E LK+ IG +LRISEGVNS LQ
Sbjct: 241 LKMFDEIWDEKFDPLDLINSFFRAAKNMENYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 301 GLLARLCIVGSK 312
G+ + +G+K
Sbjct: 296 GMFHDILDMGNK 307
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 199/324 (61%), Gaps = 21/324 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
IEKYRP + G E+T+ERLK + ++ N+P+++ SGPPGVGKT + + +AR + G
Sbjct: 12 IEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALR 117
+++ ELNAS++RGID VR KIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 72 WRENFTELNASDERGIDVVRTKIKNFAK---TAPMGGAEFKIIFLDEADALTSDAQSALR 128
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTME +SN RF L+CN S +IIEPIQSRCA+ R+ +L+D + ++ I + + +S T
Sbjct: 129 RTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITE 188
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGF----GHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
DG EA+V+ +QGDMR+A+N+LQ+ F ++ +++ +P ++ ++ +
Sbjct: 189 DGYEALVYVSQGDMRKAVNSLQAA--AFVEPNKSISRGTIYRTTATANPEDIRNLIETAL 246
Query: 234 EGNMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLD--------IPEPLKLSIIQEIGN 284
GN + + K ++ LY+ G + EDI+G I+R +D + E + ++ IG
Sbjct: 247 RGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGE 306
Query: 285 VHLRISEGVNSLLQLSGLLARLCI 308
+ R++EG +QL LLA +
Sbjct: 307 IDFRLTEGATEKIQLEALLAHFAL 330
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 193/318 (60%), Gaps = 9/318 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T ++V ++ V RLK F N+P+++ +GPPG GKTT CLA L G ++
Sbjct: 11 EKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDDYR 70
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++R I+ +R K+K FA+ +V +P KIV+LDEAD+MT AQQALRR
Sbjct: 71 KYMLELNASDERKIEVIRGKVKEFARTRVVGDVP---FKIVLLDEADNMTADAQQALRRL 127
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+YS TTRF L N KIIEPIQSR A+ R++ L+ ++ ++ IC E I
Sbjct: 128 MELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIECAEKA 187
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I ++GDMR+A+N LQ T G V E V+KV HP V+EM+ + GN +
Sbjct: 188 LETIYELSEGDMRRAINILQ-TAAALGEVVEEAVYKVLGMAHPREVREMINTALAGNFTE 246
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ + + G + DI+ I R ++ + IP+ +++ I G + R+ EG +
Sbjct: 247 ARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFRLVEGADDE 306
Query: 297 LQLSGLLARLCIVGSKNK 314
+QL+ LARL ++G K K
Sbjct: 307 IQLNAFLARLALIGKKFK 324
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 184/300 (61%), Gaps = 5/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQ+ DI G E VERL+ + ++P+++ GP G GKTT +AR + G +
Sbjct: 19 IEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVYGDDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDEADS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDEAQAALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+DA + ++ EI E I T++G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDEG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ N + G+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATTGEIVDEEAVYAITATARPEEIESMVTNALHGDFTR 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R D+ E +++++ IG RI+EG N +Q
Sbjct: 256 ARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQVQ 315
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 194/319 (60%), Gaps = 6/319 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RLK F +GN+P+++ GPPG GKTT L LAR L G ++
Sbjct: 7 FEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDAW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+NTTRF L N IIEPIQSRCA+ R++ L +LS++ I E+E + + +
Sbjct: 124 IMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGVKISQE 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
L+AI QGDMR+A+ LQ + V E V K P +++++ + G+
Sbjct: 184 ALDAIFDFTQGDMRRAITALQIASSMTKAVDEEAVAKALGYVSPSMLRQIIAEAIGGSFS 243
Query: 239 DSYKIIHHLYKLGYAPE-DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ I+ L G E +++ I R LD+PE LK + E+ H I G N LL
Sbjct: 244 KAMSQIYGLVADGGVGELELVRQIHREVLRLDVPEHLKPDLAFEVSKAHYAILRGANGLL 303
Query: 298 QLSGLLARLCIVGSKNKKT 316
Q+ GLLA++ + S +KK+
Sbjct: 304 QIYGLLAKIRKIISISKKS 322
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 199/316 (62%), Gaps = 8/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T D+VG ++ V RLK + +G++P+++ +GP G+GKTT+ + LAR G +++
Sbjct: 10 EKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFGENWQ 69
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRT 119
ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T+ AQ ALRRT
Sbjct: 70 VNFRELNASDERGIDVVRNQIKQFAR---TAPMGGAEFKILFLDEADALTNDAQAALRRT 126
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME Y+ T RF L+CN S KII+PIQSRCA+ R+ L + ++ I + E +S T D
Sbjct: 127 MENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTEGLSITEDA 186
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+ AI++ AQGDMR+A+N LQ + E ++++ P ++E+L ++GN
Sbjct: 187 MSAIIYVAQGDMRKAINALQGGAIISPEIKEEMIYEITSTARPDEIRELLSIIMDGNFNA 246
Query: 240 S-YKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ +K+ + G AP +++ +R + +I +K+ +I +G+ RISEG N +
Sbjct: 247 AEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMKVEMISHLGDADFRISEGANPNI 306
Query: 298 QLSGLLARLCIVGSKN 313
Q+ LLA+ CI+ ++N
Sbjct: 307 QMEALLAK-CILSAEN 321
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 184/300 (61%), Gaps = 5/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQT D+ G E+ VERL+ + + +VP+++ SGP G+GKTT +AR + G +
Sbjct: 19 IEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDEADS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + V EI E I T+ G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVSGMVREIAAAEEIEVTDAG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V + V+ + P ++ M+ + + G+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATTGDVVDEKAVYAITATARPEEIESMVTDALSGDFAR 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R D+ E + +++ IG RI+EG N +Q
Sbjct: 256 ARSTLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVRLMERIGEADYRIAEGANEQVQ 315
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 185/299 (61%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT DI G+E VERL + S ++ +++ +GP GVGKTT +AR L G +
Sbjct: 16 IEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYGEDW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR+++K FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 76 EENFLELNASDERGIDVVRDRVKSFA--RTSFGGYDYRIIFLDEADALTADAQSALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + +++ +I ++E I T DG+
Sbjct: 134 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQEEVIDVTEDGI 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+V+ A GDMR+A+N LQ+ V E VF++ P ++EM+ ++G+ +
Sbjct: 194 EALVYVAGGDMRKAINGLQAASMSGDTVNEEAVFEITSTARPEDIREMVDLALDGDFTAA 253
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ L + G A DII + R D+ + + ++ +G RI+EG + +Q
Sbjct: 254 RSRLDTLLTEEGIAGGDIIDQLHRTVWEFDLSDAAAVRVLDRVGEADYRITEGASERIQ 312
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 185/300 (61%), Gaps = 5/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQT DI G + VERL+ + + +VP+++ SGP G+GKTT +AR + G +
Sbjct: 19 IEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDEADS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + V EI E+I T++G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTDEG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ + + G+
Sbjct: 196 IDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGDFAR 255
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + L + G A D+I + R ++ E + +++ IG RI+EG N +Q
Sbjct: 256 ARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQVQ 315
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 186/310 (60%), Gaps = 3/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T +++G E+ +RL+ + ++PN++ SG G+GKTT +AR + G +
Sbjct: 19 VEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGEDW 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+D LELNAS+DRGID VR +IK FA + + ++I+ LDEADS+T AQ ALRRTM
Sbjct: 79 RDNFLELNASDDRGIDVVRGRIKEFA--RASFGGYSYRIIFLDEADSLTSDAQSALRRTM 136
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S KII+PIQSRCA+ R++ ++DA + ++ EI E I T+ G+
Sbjct: 137 EQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGIEITDGGV 196
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ + +EG+ +
Sbjct: 197 EALVYAADGDMRRAVNSLQAAAVMGETVDEEVVYTITATARPEEIEAMVTSALEGDFTTA 256
Query: 241 YKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G + DII + R L + + + + IG RI+EG N +QL
Sbjct: 257 RATLDDLLSNKGLSGGDIIDQLHRSVWDLGLSDREAVRTLDRIGETDYRITEGANERIQL 316
Query: 300 SGLLARLCIV 309
LA L +
Sbjct: 317 EAFLASLTLA 326
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 186/311 (59%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E + RLK + ++PN++ +GP GVGKTT L LAR +LG +
Sbjct: 9 VEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGEYW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVR IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 69 RQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRREM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R+ L Q++ ++ I EKEN+ + L
Sbjct: 127 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEYEAHAL 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E IV+ A+GD+R+A+N LQS + +T ++ V P V++M+ ++G ++
Sbjct: 187 ETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILDGKFMEA 246
Query: 241 YKIIHHLYKL-GYAPEDIIGNIF----RVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ + L G + ED++ I+ R+A ++ + +I IG RI EG N
Sbjct: 247 RDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFRIREGANP 306
Query: 296 LLQLSGLLARL 306
+QL LLAR
Sbjct: 307 RIQLEALLARF 317
>gi|449673561|ref|XP_002160048.2| PREDICTED: replication factor C subunit 2-like [Hydra
magnipapillata]
Length = 178
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/140 (79%), Positives = 126/140 (90%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI G E+T++RL+VFS GNVPNIII+GPPG+GKTT+ILCLAR LL S+
Sbjct: 37 VEKYRPLKLTDITGKEETIKRLQVFSEQGNVPNIIIAGPPGIGKTTSILCLARQLLSTSY 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAV+ELNASN+RGID VRNKIKMFAQQKVTLPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 97 KDAVMELNASNERGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTSGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKII 140
E+YS TTRFALACN S+KII
Sbjct: 157 ELYSKTTRFALACNQSDKII 176
>gi|396082076|gb|AFN83688.1| replication factor C [Encephalitozoon romaleae SJ-2008]
Length = 309
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 197/312 (63%), Gaps = 9/312 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP DIVGN T+E + + S ++P++++SGPPG GKTT LAR LL P+
Sbjct: 5 VNKYRPNGVQDIVGNHTTIELIALIIESRDMPHLLLSGPPGTGKTTCAKILARKLL-PN- 62
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ +LELNAS++RGIDTVR IK FAQ+++ KI+ILDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRI--KDCGFKIIILDEADSMTATAQQAMRRVM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S+ RF L CN KI EPIQSRCA+L + ++ + +L ++ EI E I + L
Sbjct: 121 EIHSSECRFILICNTLTKIFEPIQSRCAILMFERIDHSTILGRLREISNDEGIKINREAL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ IV + GDMRQ+LN LQ+ N + + K+ P P ++++L +E N++++
Sbjct: 181 DLIVELSDGDMRQSLNILQACINSSETIDQNRIVKIIGLPSPKRIEKVLEKLMENNVEEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ ++ + P D+IG+ F+ AK ++ + LK+ IG +LRISEGVNS LQ
Sbjct: 241 LEMFDKIWDEKFDPLDLIGSFFKAAKNMENYDLLKV-----IGLANLRISEGVNSRLQFY 295
Query: 301 GLLARLCIVGSK 312
G+ + +GSK
Sbjct: 296 GMFHDILNMGSK 307
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 184/307 (59%), Gaps = 3/307 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EK+RP T S++VG + ERL+ F ++P+++ SGPPG GKTT + LA+ L G +K
Sbjct: 7 EKHRPNTLSEVVGQNEITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLYGDEWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+E NAS +RGID VR KIK FA+ K +KI+ LDEADS+T AQQALRRTME
Sbjct: 67 QNFMETNASEERGIDVVREKIKDFARTKAI--NAEYKIIFLDEADSLTSDAQQALRRTME 124
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+S+ RF ++CN S KII+PIQSRCA+ R+N+L + + S + + E EN S + D +E
Sbjct: 125 QFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVKSYIQRLGESENFSISEDAVE 184
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A++ + GD+R+ N LQ+ + E V+ V P + E+L + D+
Sbjct: 185 AVMRVSDGDLRRVTNVLQTAAISTDEIEEEDVYSVSASLKPKEITEILEKTISNQFIDAR 244
Query: 242 KIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ L + G +D++ +I R LDI + KL +I+ +G RI+EG ++ +Q+
Sbjct: 245 DQLSDLMIERGLDGQDVVSSIHREVYNLDISDQQKLELIEALGEFEFRITEGASADVQIE 304
Query: 301 GLLARLC 307
LLA++
Sbjct: 305 ALLAKIA 311
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E + RLK + ++PN++ +GP GVGKTTT L LAR +LG +
Sbjct: 6 VEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVR IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 66 RQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R+ L ++S++ I E+E + + L
Sbjct: 124 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEGLEYEPQAL 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +V+ A+GD+R+A+N LQS + +T +++V P V++M++ ++G ++
Sbjct: 184 DTVVYFAEGDLRKAINILQSAASLGEKITESSIYEVVSRARPKDVRKMIMTILDGKFMEA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIF----RVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ + L G + ED++ I+ R+A I + +I+ +G RI EG N
Sbjct: 244 RDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLIEAVGEYDFRIREGANP 303
Query: 296 LLQLSGLLARL 306
+QL LLAR
Sbjct: 304 RIQLEALLARF 314
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 193/318 (60%), Gaps = 9/318 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T ++V ++ V RLK F ++P+++ +GPPG GKTT CLA L G +K
Sbjct: 32 EKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHCLAHDLYGDDYK 91
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++R I+ +R K+K FA+ +V +P KIV+LDEAD+MT AQQALRR
Sbjct: 92 KYMLELNASDERKIEVIRGKVKEFARSRVVGEVP---FKIVLLDEADNMTADAQQALRRL 148
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+YS TTRF L N KIIEPIQSR A+ R++ L ++ ++ IC E +
Sbjct: 149 MELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVERLRYICNAEKVKCDERA 208
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I ++GDMR+A+N LQ+T G V E V+KV HP V+EML + GN +
Sbjct: 209 LETIYELSEGDMRRAINILQTT-AALGEVVEEAVYKVIGLAHPREVREMLNEALSGNFTE 267
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ + + G + DII I + ++ + IP+ +++ I G + R+ EG +
Sbjct: 268 ARNKLRTLMIEYGLSGVDIIRQIHKEIFSQEVKIPDEMRVLIADLAGEIQFRLVEGADDE 327
Query: 297 LQLSGLLARLCIVGSKNK 314
+QL+ LARL ++G K K
Sbjct: 328 IQLNAFLARLALIGRKFK 345
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 197/316 (62%), Gaps = 6/316 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG ++ ++RLK + N+P+++ +GPPG GKT T + LAR L G +
Sbjct: 7 VEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGEVW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ +E+NAS++RGID VR+KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 67 RENFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME+YS RF L+CN +IIEPIQSRCA+ ++ + + ++ EI E E + ++
Sbjct: 124 TMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIAENEGLEIDDE 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
LE +++ + GD R+A+N LQ +T E ++++ P +++++ ++GN
Sbjct: 184 ALEVLIYISGGDFRKAINALQGAAALDKRITPEILYQITATARPEELRKIIDTALKGNYL 243
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ ++ +L + G + ED++ +FR ++ E LK+ +I ++G + R++EG + L+
Sbjct: 244 QAKDMLENLMAEYGMSGEDVVSQLFREIMYSNLDEKLKVVLIDKLGEIDFRLTEGASELI 303
Query: 298 QLSGLLARLCIVGSKN 313
QL+ LA L + +
Sbjct: 304 QLNAYLAFLSTIQKRR 319
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 187/315 (59%), Gaps = 2/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VG +D V RL+ + +GN+P+++ +G G+GKTT + LAR G S+
Sbjct: 9 IEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDSW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ E+NAS++RGID VRN+IK FA+ L KI+ LDEAD++T AQ ALRRTM
Sbjct: 69 QTNFREMNASDERGIDVVRNQIKEFARTS-PLAGATFKILFLDEADALTTDAQAALRRTM 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ T RF L+CN S KII+PIQSRCA+ R+ L ++ + I E ++ T L
Sbjct: 128 ETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGAL 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AIV+ A GDMR+A+N LQ + E +F++ P + E+L + G ++
Sbjct: 188 DAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDELLDLSIGGRFDEA 247
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L + G AP ++I +R DI LK+ +I +G R+SEG +S +Q+
Sbjct: 248 EQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSDIQM 307
Query: 300 SGLLARLCIVGSKNK 314
LLAR + +++
Sbjct: 308 EALLARFVLAAEQHR 322
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 192/316 (60%), Gaps = 3/316 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ DIVG ++ V RLK + + N+P+++ SGPPGVGKT + + + + G ++
Sbjct: 9 IEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFGETW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ +ELNAS++RGID +R+K+K FA+ L K++ LDEAD++T+ AQ ALRRTM
Sbjct: 69 RNNFIELNASDERGIDIIRHKVKDFARM-APLGEADFKVIFLDEADALTNDAQSALRRTM 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS TTRF L+CN S KIIEPIQSRCA+ R+ L+ + ++ I +E + ++ GL
Sbjct: 128 ERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEGLRVSDGGL 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI + A GDMR+A+N LQ+ V E ++++ P +K + + G+ +
Sbjct: 188 SAIEYVAGGDMRKAINALQAAALLGDEVDEETIYQITSTAKPEEIKSFIKTAISGDFVGA 247
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
I+ L G + +D++ I R L DI + ++ +I IG + R++EG N +Q
Sbjct: 248 RAILDDLLLSKGLSGQDVVIQIHRAMLDLDDIADRDRVKLIDRIGEIDFRMTEGANERIQ 307
Query: 299 LSGLLARLCIVGSKNK 314
L LLA ++ S+ +
Sbjct: 308 LEALLAYFALMASEQR 323
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 202/322 (62%), Gaps = 11/322 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT ++VG E T+ RLK + GN+PN++ +GP GVGKTTT + LA+ +LG +
Sbjct: 32 VEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLGEYW 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVRN IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 92 RQNFLELNASDARGIDTVRNDIKSFCRLKAVGSPFR--IIFLDEVDNMTKDAQHALRREM 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R+ + Q++ ++ I + E + +
Sbjct: 150 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIKRLEYIAQAEGLKIDIAAI 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E+IV+ A+GDMR+A+N LQ++ + VT E V +V + P VK+++ ++G+ +
Sbjct: 210 ESIVYFAEGDMRRAVNILQASSSAGEEVTEESVDEVVSKAKPKDVKKIVNKALDGDFIGA 269
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFR-VAK-TLD--IPEPLKLSIIQEIGNVHLRISEGVNS 295
+++ + + G + ED++ I++ V+K LD + E + +++++ IG RI EG N
Sbjct: 270 RELLRDVMVVQGTSGEDMVTQIYQEVSKMALDGSLNEDIYINLVESIGETDYRIREGSNP 329
Query: 296 LLQLSGLLARLCIVGSKNKKTD 317
+QL LL + I N K D
Sbjct: 330 RIQLEALLTKFLI----NSKAD 347
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 200/323 (61%), Gaps = 13/323 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+VG +D + LK F ++P+++ +GP G GKTTT L LA L
Sbjct: 7 VEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSEE 66
Query: 61 KDAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQAL 116
A LELNAS++RGIDT+R KIK FA+ T P G KI+ LDEAD++T AQQAL
Sbjct: 67 LVAANYLELNASDERGIDTIRTKIKDFAK---TAPFGEVPFKIIHLDEADNLTADAQQAL 123
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RR ME+YS TTRF ACN S KIIEPIQSRCA+ R+ + + + +++I I E+E + +T
Sbjct: 124 RRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAEREGLKYT 183
Query: 177 NDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
DG+ AI++ A+GD+R+A+N LQ+ V ++ V++V HP V+ M+ + ++G
Sbjct: 184 EDGISAIIYVAEGDLRKAINLLQTASAMASTVDSKVVYRVAGLAHPEEVRAMINSALKGK 243
Query: 237 MKDSYKIIHHLY-KLGYAPEDIIGNIFR---VAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+ + + +L G + +D+I + R +K+L E L I + V R++EG
Sbjct: 244 FLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIF--LSEVDFRVTEG 301
Query: 293 VNSLLQLSGLLARLCIVGSKNKK 315
+ +QL+ +LA+L VG +++
Sbjct: 302 AHGDVQLAAMLAKLVEVGESHER 324
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 190/318 (59%), Gaps = 6/318 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ DI+G ++ +ERL+ + + +P+++ +G G GKTT + LAR G +
Sbjct: 9 IEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGEDW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 QMNFRELNASDERGIDVVRNQIKQFAR---TSPFGGSTFKILFLDEADALTTDAQSALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ L + V I +N++ T +
Sbjct: 126 TMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTEE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++AI + AQGDMR+A+N LQ ++ + +F + P + +++ + GN
Sbjct: 186 VIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDDLIDLSLAGNFL 245
Query: 239 DSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + L+ G AP+++I ++R D+PE +K+ +I +G R+SEG S +
Sbjct: 246 GAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSDI 305
Query: 298 QLSGLLARLCIVGSKNKK 315
Q+ L+A+ + G +N +
Sbjct: 306 QMQSLIAKFVMYGGRNSR 323
>gi|401828593|ref|XP_003888010.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
gi|392999018|gb|AFM99029.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
Length = 309
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 193/303 (63%), Gaps = 9/303 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP DIVGN TVE + + S ++P++++SGPPG GKTT L R LL PS
Sbjct: 5 VNKYRPNEIQDIVGNHTTVELVSLIIESRDMPHLLLSGPPGTGKTTCARILTRKLL-PS- 62
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ +LELNAS++RGIDTVR IK FAQ+KV KI+ILDEADSMT AQQA+RR M
Sbjct: 63 REGLLELNASDERGIDTVRTTIKNFAQRKV--KGCEFKIIILDEADSMTSAAQQAMRRVM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++S+ RF L CN KI EPIQSRCA+LR+ ++ + +L K+ EIC E I + + L
Sbjct: 121 EVHSSECRFILICNTLTKIFEPIQSRCAILRFERIEHSTILGKLKEICGNEGIKISCEAL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +V + GDMRQ+LN LQ+ N + + + K+ P P ++++L V+ ++++
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSSETIDRDRIIKIIGLPSPKRIEKVLERLVKNEVEEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ ++ + P D+I + FR AK ++ E LK+ IG +LRISEGVNS LQ
Sbjct: 241 LEMFDTIWDEKFDPLDLINSFFRAAKNMENYELLKV-----IGLTNLRISEGVNSRLQFY 295
Query: 301 GLL 303
G+
Sbjct: 296 GMF 298
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 184/299 (61%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ S + G+ D V RL+ + + ++P+++ +GP GVGKTT+ + +AR + G +
Sbjct: 14 IEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYGDDW 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 74 RENFLELNASDERGIDVVRDRIKNFA--RASFGGYDYRIIFLDEADALTSDAQSALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++N TRF L+CN S +II+PIQSRCA+ R+ L + V I E+E I T DG+
Sbjct: 132 EQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAEEEGIEITEDGI 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P ++ M+ ++G+ +
Sbjct: 192 DALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAVRPEQIETMVTTALDGDFTAA 251
Query: 241 -YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
K+ L + G D+I + R A + D+ + + +++ +G RIS+G N LQ
Sbjct: 252 RAKLDDLLTEAGLGGGDVIDQLHRSAWSFDLDDRATVRLLERVGETDYRISQGANERLQ 310
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 187/309 (60%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IE+YRP +DIVG ++ ERL + ++P+++ +G G+GKTT + LAR G ++
Sbjct: 10 IERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFGEAW 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
E+NAS++RGID VRN+IK FA+ L KI+ LDEAD++T AQ ALRRTM
Sbjct: 70 HINFREMNASDERGIDVVRNQIKQFARTS-PLEGAEFKILFLDEADALTTDAQAALRRTM 128
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS RF L+CN S KII+PIQSRCA+ R+ LT + ++ +I KE I+ T D +
Sbjct: 129 ETYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKEGITVTPDAI 188
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIV+ AQGDMR+A+N LQ + E V+ + P ++E+L + G+ + +
Sbjct: 189 EAIVYIAQGDMRKAINALQGASIVSKSIDQEMVYAITSSARPDEIEELLGLILVGDFEGA 248
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
++ L + G AP +++G ++R + LK+++I +G R+SEG + LQ+
Sbjct: 249 EAVLLALMHTRGIAPAELLGQVYRALSGRSMERELKVALIGHLGETDFRLSEGASPDLQM 308
Query: 300 SGLLARLCI 308
LLAR C+
Sbjct: 309 EALLAR-CV 316
>gi|385304309|gb|EIF48332.1| dna replication factor c subunit [Dekkera bruxellensis AWRI1499]
Length = 212
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/186 (60%), Positives = 144/186 (77%), Gaps = 3/186 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+VGN+DT+E L+ + GN+P++I+SG PG+GKTT+I+CLAR L
Sbjct: 15 VEKYRPRYLKDVVGNKDTIESLERIAQQGNMPHMILSGLPGIGKTTSIMCLARELFHDDQ 74
Query: 60 --FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 117
K+A+LELNAS+DRGID VRN+IK FAQ+KV+LPP R KIV+LDEADSMT AQQALR
Sbjct: 75 KLMKNAILELNASDDRGIDVVRNQIKQFAQKKVSLPPNREKIVVLDEADSMTPXAQQALR 134
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTMEIYSNTTRFA ACN S KIIEPIQSRCA+LR+++L D ++L + I +KE I
Sbjct: 135 RTMEIYSNTTRFAFACNQSSKIIEPIQSRCAILRFSRLKDEEVLLALQRIVDKEKIEFYG 194
Query: 178 DGLEAI 183
+ +I
Sbjct: 195 GWISSI 200
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 185/299 (61%), Gaps = 3/299 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ +IVG+E ERLK + + ++P+++ +GP G GKTT+ + +A+ + G +
Sbjct: 15 IEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGDDW 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+++ LDEAD++T AQ ALRRTM
Sbjct: 75 RENFLELNASDQRGIDVVRDRIKSFA--RASFGGYDHRVIFLDEADALTSEAQSALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R++ L +A + ++ I E E I T+DG+
Sbjct: 133 EQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGIEITDDGM 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ G V E V+ + P ++ M+ ++G+ +
Sbjct: 193 DALVYAAAGDMRKAINGLQAAAVVGGVVDEEAVYTITSTARPEEIETMVSAALDGDFTAA 252
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ L +G A DII + R D+ E + +++ +G RI+ G N +Q
Sbjct: 253 RAQLDTLLTDVGIAGGDIIDQMHRSVWEFDLGEREAVRLMERVGEADYRITAGANEQIQ 311
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 183/310 (59%), Gaps = 7/310 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ D+V + V RLK + +PN++ +GP GVGKTT L LAR +LG ++
Sbjct: 7 EKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILGEYWQ 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
LELNAS+ RGIDTVR +IK F + + P R IV LDE D+MT AQQALRR ME
Sbjct: 67 QNFLELNASDARGIDTVRTEIKNFCRLRPINAPFR--IVFLDEVDNMTRDAQQALRREME 124
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+Y+ T F L+CN S KIIEP+QSRC + R+ L ++ ++ ICEKEN+ + L+
Sbjct: 125 MYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKENVDYEEKALD 184
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
AIV+ A+GD+R+A+N LQ+ +T + ++ V + P V++M++ + G +
Sbjct: 185 AIVYFAEGDLRKAINILQAAAALDKTITEDDIYDVVSKARPEDVRKMIVKALNGEFLKAR 244
Query: 242 KIIHH-LYKLGYAPEDIIGNIFRVAKTL----DIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+++ + G + ED+I I+R L ++ E + + IG RI EG N
Sbjct: 245 EMLREIMISYGVSGEDLIDQIYREFSRLAIDGEVDEETYVKFVDVIGEYDFRIREGANPR 304
Query: 297 LQLSGLLARL 306
+QL LLA L
Sbjct: 305 IQLESLLASL 314
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 188/310 (60%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T ++V ++D ++ F +G +P++++ GPPG GKT+T+L LAR L GP +
Sbjct: 33 VEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPPY 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR++IK FA KV G K+VILDEAD MT AQ ALRR +
Sbjct: 93 QKHILELNASDDRGIDVVRDQIKSFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVI 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L + ++ KV ++ EKE ++ T+DG
Sbjct: 152 ETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEVQRKVDDVVEKEGVNLTDDGR 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ ++GDMR+ALN LQ+ H + + V+ PHP ++ ++ + + S
Sbjct: 212 AALLKLSKGDMRRALNVLQACHAAYDKIDEMAVYTCTGNPHPRDIERVVQSMMADEFGTS 271
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D+I + +T+++P ++ ++ +G+ R+S G + +QL
Sbjct: 272 YSLITSLKLEKGLALQDLISGAYDFLQTIEMPPSARVYLLDHLGSCEHRLSLGGSEKMQL 331
Query: 300 SGLLARLCIV 309
+ LL I
Sbjct: 332 TALLGAFKIA 341
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/305 (38%), Positives = 188/305 (61%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D ++ F +G +P++++ GPPG GKT+T+L LAR L GP++
Sbjct: 11 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA KV G K+VILDEAD MT AQ ALRR +
Sbjct: 71 RKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVI 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L + ++ KV E+ +KE ++ T+DG
Sbjct: 130 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI+ ++GDMR+ALN LQ+ H + V V+ PHP ++ ++ + + +
Sbjct: 190 DAILKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTA 249
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D+I + T+++P+ ++ ++ +G+ R+S G + +QL
Sbjct: 250 YSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQL 309
Query: 300 SGLLA 304
+ LL
Sbjct: 310 TALLG 314
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/305 (38%), Positives = 188/305 (61%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D ++ F +G +P++++ GPPG GKT+T+L LAR L GP++
Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 116
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA KV G K+VILDEAD MT AQ ALRR +
Sbjct: 117 RKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVI 175
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L + ++ KV E+ +KE ++ T+DG
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 235
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI+ ++GDMR+ALN LQ+ H + V V+ PHP ++ ++ + + +
Sbjct: 236 DAILKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTA 295
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D+I + T+++P+ ++ ++ +G+ R+S G + +QL
Sbjct: 296 YSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQL 355
Query: 300 SGLLA 304
+ LL
Sbjct: 356 TALLG 360
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 188/305 (61%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D ++ F +G +P++++ GPPG GKT+T+L LAR L GP++
Sbjct: 11 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA KV G K+VILDEAD MT AQ ALRR +
Sbjct: 71 RKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVI 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L + ++ KV E+ +KE ++ T+DG
Sbjct: 130 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + V V+ PHP ++ ++ + + +
Sbjct: 190 DALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTA 249
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D+I + T+++P+ ++ ++ +G+ R+S G + +QL
Sbjct: 250 YSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQL 309
Query: 300 SGLLA 304
+ LL
Sbjct: 310 TALLG 314
>gi|402467377|gb|EJW02684.1| DNA polymerase III, subunit gamma and tau [Edhazardia aedis USNM
41457]
Length = 321
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 186/313 (59%), Gaps = 16/313 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ GN D VE L+ + N+P+++ +GPPG GKTT +A+ LL +
Sbjct: 5 VEKYRPKKLEDVFGNTDAVETLRCILKAKNMPHLLFTGPPGTGKTTCAKIIAKELLCANI 64
Query: 60 --------FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 111
+ LELNAS+DRGID +R++IKMFA +KV KI+ILDEADSMT
Sbjct: 65 TSEEMKNHYNQCCLELNASDDRGIDVIRDRIKMFATKKVDSQDAIKKIIILDEADSMTTA 124
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQQALRR ME TRF L CN KI EPIQSRCA+L+++KL + + + + I +E
Sbjct: 125 AQQALRRVMETCVE-TRFILICNTFSKIFEPIQSRCAVLKFDKLDNCAIKTYLARIGNEE 183
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYV-FKVCDEPHPLAVKEMLL 230
NI ++D LE I+ + GDMRQ +N LQS + E V K+ +P P + E++
Sbjct: 184 NIQLSDDALEMIITLSDGDMRQGINILQSCIYFSDDIIDEKVILKITGQPSPKIIAEIVE 243
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + N++ + + L++ + D+I FR K +D E I++ +G VHLRI+
Sbjct: 244 SLAKNNVEKAISLFDGLWEQKFDAIDLIQGFFRYGKKIDSYE-----ILKAVGPVHLRIA 298
Query: 291 EGVNSLLQLSGLL 303
+G+N+ LQ GL
Sbjct: 299 DGINTKLQFYGLF 311
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 188/305 (61%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D ++ F +G +P++++ GPPG GKT+T+L LAR L GP++
Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 116
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA KV G K+VILDEAD MT AQ ALRR +
Sbjct: 117 RKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVI 175
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L + ++ KV E+ +KE ++ T+DG
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 235
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + V V+ PHP ++ ++ + + +
Sbjct: 236 DALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTA 295
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D+I + T+++P+ ++ ++ +G+ R+S G + +QL
Sbjct: 296 YSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQL 355
Query: 300 SGLLA 304
+ LL
Sbjct: 356 TALLG 360
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ ++ G E + L+ + N+P++I SGP GVGKT + +AR ++
Sbjct: 9 EKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFYDDTWA 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRT 119
+ ELNAS++RGI+ VRN IK FA+ T+P G KI+ LDEAD++TD AQ ALRRT
Sbjct: 69 ENFTELNASDERGIEVVRNTIKNFAR---TMPIGDAAFKIIFLDEADALTDAAQSALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME YS T RF L+CN S KIIEPIQSRC++ R+ L+ + S+ I + E ++ + D
Sbjct: 126 MERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADTEGLTLSEDA 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L AI + + GDMR+A+N LQS + E ++++ P ++ ++ + G D
Sbjct: 186 LRAINYVSMGDMRRAINALQSASVLSNEIKPEMIYEITATARPDEIEALIETAMAGEFLD 245
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L G + ++I+ + R+A +DI K+ ++ IG RI+EG N +QL
Sbjct: 246 ALDKLGVLIDKGISGDEILAQMHRLAIKMDISARQKVELMDRIGETDYRITEGANERIQL 305
Query: 300 SGLLARLCIV 309
L+A LC+V
Sbjct: 306 DALIASLCLV 315
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 183/295 (62%), Gaps = 3/295 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP +++ G +D ERL+ + + ++P+++ SGP GVGKTT+ + +AR + G +
Sbjct: 15 IEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGDDW 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+D LELNAS++RGID VR++IK FA + + ++++ LDEAD++T AQ ALRRTM
Sbjct: 75 RDNFLELNASDERGIDVVRDRIKNFA--RTSFGGYDYRVIFLDEADALTSDAQSALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++N TRF L+CN S +II+PIQSRCA+ R+ L + + V +I +E I T+DG+
Sbjct: 133 EQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVEQIAGEEGIEITDDGV 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P ++ M+ + + G+ +
Sbjct: 193 DALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAARPEEIETMVQHAIGGDFTAA 252
Query: 241 -YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
K+ L G D+I + R A + ++ + + +++ +G RI++G N
Sbjct: 253 RAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGETDYRITQGAN 307
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 188/313 (60%), Gaps = 2/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ ++VG ++ V+RLK + + +P+++ +GP G GKTT + LAR L G ++
Sbjct: 6 VEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFGENW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ + ELNAS++RGI VR KIK +A+ G KI+ LDEAD++T AQ ALRRTM
Sbjct: 66 RASFHELNASDERGIGIVRTKIKEYARTAAPNDVG-FKIIFLDEADALTPDAQAALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS T RF L+CN S KIIEPIQSRCA+ R+ L + ++ I + E T D L
Sbjct: 125 EMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGKKITEDAL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AIV+ + GDMR+A+N LQ + + V+K V+++L + G+ ++
Sbjct: 185 NAIVYISGGDMRKAINILQMSAAISDTIDEGVVYKATGLAKREDVEDVLKKALAGDFIEA 244
Query: 241 Y-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K+ L +LG + ED+I I RV L I + LK+ ++ + G + RI EG N +QL
Sbjct: 245 RNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDKTGEIEFRIVEGANERIQL 304
Query: 300 SGLLARLCIVGSK 312
LLA + GSK
Sbjct: 305 DALLAYFTLAGSK 317
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 185/309 (59%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F++IV E+ RL F +GN+P+++ GPPG GKTTT L LAR L G +
Sbjct: 7 FEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGERW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G K+V+LDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPAGGAPFKLVVLDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ TTRF L N IIEPIQSRCA+ R++ L +++++ I E+E + T D
Sbjct: 124 IMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGLKVTQD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
LEAI QGDMR+A+ LQ + + E + + P ++ ++ + G+
Sbjct: 184 ALEAIFDFTQGDMRRAITALQIASSTTREIDEEAIARALGYVSPSILRRLIAEAISGDFS 243
Query: 239 DSYKIIHHLYKLGYAPE-DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ I+ + G E ++I I R LD+PE LK + E+ H + G N L+
Sbjct: 244 KAISQIYGIVADGGVGELELIRQIHREVLRLDVPEHLKPDLAYEVERAHYAVLRGANGLV 303
Query: 298 QLSGLLARL 306
Q+ G+LAR+
Sbjct: 304 QIYGILARV 312
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 191/313 (61%), Gaps = 9/313 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ +IV E+T+ RLK F N P+++ +GPPG GKTT L A L G +++
Sbjct: 14 EKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGKNYQ 73
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
VLELNAS++RGID +R KIK FA+ V +P K++ILDE+D++T AQQALRR
Sbjct: 74 QFVLELNASDERGIDVIRGKIKEFARTSVVGGVP---FKLIILDESDNLTSDAQQALRRM 130
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME ++ T+RF L N KIIEPIQSR A+ R++ L ++ ++ I E E++S+
Sbjct: 131 MENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENESVSYEESA 190
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEA+ ++GDMR+A+N LQS + G VT + V+KV HP ++EML + G+
Sbjct: 191 LEAVFEISEGDMRKAINVLQSA-SAIGKVTVDTVYKVVGLAHPKEIREMLNLALSGDFNG 249
Query: 240 SYKIIHHL-YKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + + L G + D+I I + + +D+ E +KL I G + RI+EG +
Sbjct: 250 ARERLRKLMMDYGLSGVDVIKQIHKEIFSNEIDLSEEMKLMIADYTGEILFRITEGSDDE 309
Query: 297 LQLSGLLARLCIV 309
+QL+ LA L ++
Sbjct: 310 IQLNSFLAWLVLL 322
>gi|323352310|gb|EGA84845.1| Rfc4p [Saccharomyces cerevisiae VL3]
Length = 205
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 153/201 (76%), Gaps = 5/201 (2%)
Query: 108 MTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
MT GAQQALRRTME+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I
Sbjct: 1 MTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQI 60
Query: 168 CEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKE 227
+ E++ +TNDGLEAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+
Sbjct: 61 IKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKK 120
Query: 228 MLLNCVEGNMKDSYKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNV 285
MLL N++DS +I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG
Sbjct: 121 MLL---ASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLT 177
Query: 286 HLRISEGVNSLLQLSGLLARL 306
H+RI EGV + LQL+ +L ++
Sbjct: 178 HMRILEGVGTYLQLASMLXKI 198
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 188/305 (61%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D ++ F +G +P++++ GPPG GKT+T+L LAR L GP++
Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 116
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA KV G K+VILDEAD MT AQ ALRR +
Sbjct: 117 RKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVI 175
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L + ++ KV E+ +KE ++ T+DG
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 235
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + V V+ PHP ++ ++ + + +
Sbjct: 236 DALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMVDEFGTA 295
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D+I + T+++P+ ++ ++ +G+ R+S G + +QL
Sbjct: 296 YSLITTLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQL 355
Query: 300 SGLLA 304
+ LL
Sbjct: 356 TALLG 360
>gi|410720678|ref|ZP_11360031.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600389|gb|EKQ54917.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 321
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 192/311 (61%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT ++VG + ++RLK + + N+PN++ +GP GVGKTTT + LA+ +LG +
Sbjct: 6 VEKYRPQTLDEVVGQDHIIQRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K LELNAS+ RGI+TVR IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 66 KQNFLELNASDARGIETVRKDIKSFCRLKAMGAPFR--IIFLDEVDNMTKDAQHALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R+ + Q++ ++ I + EN+++ L
Sbjct: 124 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIKRLEVIAKAENVNYAPGTL 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E+IV+ A+GDMR+A+N LQST + V E V +V + P V+ ++ ++G+ +
Sbjct: 184 ESIVYFAEGDMRRAVNILQSTASMGEEVNEETVHEVVSKAKPKDVRRIVNLALDGDFMGA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLK----LSIIQEIGNVHLRISEGVNS 295
++ + + G + ED++ +++ + + + + + +++ IG RI EG N
Sbjct: 244 RDLLREVMVVQGTSGEDMVTQVYQEVSKMAMDDLISSEDYIKLVEHIGEYDFRIREGANP 303
Query: 296 LLQLSGLLARL 306
+QL LL +
Sbjct: 304 RIQLEALLTKF 314
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 182/309 (58%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F +GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGIGVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N IIEPIQSR M+R+N L ++S++ I E E + ++D
Sbjct: 124 IMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGVKVSDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
LEAI QGDMR+A+N LQ + VT E V K P ++E+L +G+
Sbjct: 184 ALEAIYEFTQGDMRKAINALQVAASVSREVTEEEVAKALGMVSPRLLREVLQEATKGSFN 243
Query: 239 DSYKIIHHLYKLGYAPE-DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ I+ G E +II + R LD+PE +K ++ +G H I G L
Sbjct: 244 KALTQIYGFVVDGGVGELEIIRQLHREVLRLDVPEYVKPELVYIVGRAHYAILRGARGLA 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIYGALAKI 312
>gi|13242558|ref|NP_077572.1| EsV-1-87 [Ectocarpus siliculosus virus 1]
gi|10697317|gb|AAG21804.1|AF210454_2 EsV-1-87 [Ectocarpus siliculosus virus 1]
Length = 324
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 197/312 (63%), Gaps = 11/312 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLGPS 59
+EKYRP FS++VGN+ ++ L ++ ++P+++I GP G GKT + L ++ +
Sbjct: 7 VEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCVDILCNTMIPEN 66
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV-TLP-PGRHKIVILDEADSMTDGAQQALR 117
+L L++ ++RGID VR +K FA+ +V T P P KIV+LDEADSMT GA QALR
Sbjct: 67 RGARMLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPGAFQALR 126
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R M++YS+TTRF + CNNS KIIEPIQSRCA+LR++K+ DAQL ++ ++C+ + +
Sbjct: 127 RIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVDDAQLRLRIRQVCDMAGVEYDP 186
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHP---LAVKEMLLNCVE 234
G+ A+ A GD+R A+N+L S +GF +T+E V++ C P P + + ++L N +
Sbjct: 187 GGIGALACVADGDVRSAINSLASIVSGFRRLTSENVYRTCRSPQPAKIVDIVDLLRN--K 244
Query: 235 GNMKDSYKIIHHLY---KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
G ++ + + L GY+P DI+ + F+ +D+ E ++ I + IG V R+
Sbjct: 245 GGYVEACRKLRGLCGEGGEGYSPTDILSSFFKALSVIDVRESQRIEIAKVIGLVQNRVLS 304
Query: 292 GVNSLLQLSGLL 303
G +S LQL+ +L
Sbjct: 305 GASSYLQLAAML 316
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 187/311 (60%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT DIVG + VE LK + G++PN++ +GP GVGKTT+ L L + +LG +
Sbjct: 6 VEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILGDYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGI+TVR IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 66 RQNFLELNASDARGIETVRTNIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T F L+CN S KII+PIQSRCA+ R+ + ++ ++ I E E + +
Sbjct: 124 EMYTKTCSFILSCNYSSKIIDPIQSRCAIFRFAPIKAEEIADRLKYIAEAEGCEYEEKAI 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E IV +GDMR+++N LQS + G++T ++V++V + P +KEM+ + G +S
Sbjct: 184 ETIVLFGEGDMRKSVNMLQSAAST-GNITEDHVYEVVTKARPQEIKEMVDAALRGKFMES 242
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFR--VAKTLD--IPEPLKLSIIQEIGNVHLRISEGVNS 295
I+ + L G + ED++ I++ + +D + + + +I I + RI EG N
Sbjct: 243 RNILRDVMILQGTSGEDMVNQIYQDVAGRVMDGKMSGEVYMELIGAIADTDFRIREGANP 302
Query: 296 LLQLSGLLARL 306
+QL LLA+
Sbjct: 303 RIQLEALLAKF 313
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 187/313 (59%), Gaps = 2/313 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ ++VG ++ VERLK + + ++P+++ +GP G GKTT + LAR L G ++
Sbjct: 6 VEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDNW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ + ELNAS++RGI VR KIK +A+ G KI+ LDEAD++T AQ ALRRTM
Sbjct: 66 RSSFHELNASDERGIGIVRTKIKEYARTAAPNDVG-FKIIFLDEADALTPDAQAALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS T RF L+CN S KIIEPIQSRCA+ R+ L + ++ I E E T+D L
Sbjct: 125 EMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGKEITDDAL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AIV+ + GDMR+A+N LQ + + V+K V+E++ + G+ +
Sbjct: 185 DAIVYISSGDMRKAINILQMSAAISDTIDEGTVYKATGIAKREDVEEVVKKALGGDFISA 244
Query: 241 Y-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K+ L +LG + ED+I I RV L I + LK+ ++ G + R+ EG N +QL
Sbjct: 245 RNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDRTGEIEFRMVEGANERIQL 304
Query: 300 SGLLARLCIVGSK 312
LLA + G +
Sbjct: 305 DALLAYFTLAGRR 317
>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
Length = 305
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 185/306 (60%), Gaps = 3/306 (0%)
Query: 13 VGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND 72
+G + V RLK + ++ N+P+++ SGPPGVGKT + + R + G ++D +ELNAS++
Sbjct: 1 MGQPEIVRRLKSYVATRNLPHLLFSGPPGVGKTAAAISIVREIFGEGWRDNFIELNASDE 60
Query: 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALA 132
RGID VR K+K FA+ L K++ LDEAD++T AQ ALRRTME YS T RF L+
Sbjct: 61 RGIDVVRTKVKDFARM-APLGGAEFKVIFLDEADALTSDAQSALRRTMERYSATCRFILS 119
Query: 133 CNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMR 192
CN S KIIEPIQSRCA+ R+ LT + ++ I E+E + T DG+EAI + A+GDMR
Sbjct: 120 CNYSSKIIEPIQSRCAVYRFRALTPDAIEKRIRYIAEQEGVEVTEDGIEAINYVARGDMR 179
Query: 193 QALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL-G 251
+A+N LQ+ V ++++ P ++ ++ + G+ + + L + G
Sbjct: 180 KAINALQAAALISDKVDMNTIYQITSMARPEQIRNLIKMAISGDFAGARNELDDLLLVQG 239
Query: 252 YAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG- 310
+ +D++ I R LD+P+ K+ +I IG + RI+EG N +QL L+A + + G
Sbjct: 240 LSGQDVVVQIHREMLDLDVPDADKVRMINRIGEIDFRITEGANERIQLEALIAYMALTGL 299
Query: 311 SKNKKT 316
SK+ T
Sbjct: 300 SKSTAT 305
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 194/318 (61%), Gaps = 9/318 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+E++RP D+V E L F G++P+++ GPPGVGKTT L LAR L G S+
Sbjct: 10 VERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDSW 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+ +VLELNAS++RGID +R K+K FA+ T+P G K+VILDEAD+MT AQQALRR
Sbjct: 70 RSSVLELNASDERGIDVIREKVKEFAR---TIPTGPVPFKLVILDEADNMTSDAQQALRR 126
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y++TTRF L N IIEPIQSRCA+ R+N L ++ ++ +I ++ + T D
Sbjct: 127 IMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTED 186
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEAI +QGDMR+A+N LQ+T V E V++V V E + + + G +
Sbjct: 187 GLEAIWEVSQGDMRKAINTLQTTTTTNKKVDREAVYRVVGRVEFKVVDEFIESALSGRFE 246
Query: 239 DSYKIIHH-LYKLGYAPEDIIGNI---FRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
DS K++ + +Y G + +++ I + +P K+ + + + ++ R+ G +
Sbjct: 247 DSRKLLRNIMYTYGVSGVELLKYIEDELLINDKFKLPVDAKVEVSELVADIDNRLVTGSD 306
Query: 295 SLLQLSGLLARLCIVGSK 312
+QL+ L+A+L ++GSK
Sbjct: 307 EEIQLTALIAKLALIGSK 324
>gi|253742391|gb|EES99226.1| Replication factor C, subunit 4 [Giardia intestinalis ATCC 50581]
Length = 322
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 189/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IE+YRP+T ++GN + + RL+ F++ GN+PNI+++G PG+GKTT LCLA +LG +
Sbjct: 7 IERYRPRTLDGLIGNPEILRRLRYFAAQGNLPNILLTGGPGLGKTTIALCLANQMLGSNR 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+A LELNAS++R + +R K+K FAQ++VTLP G K+V LDE D+MT+ AQQ LRR M
Sbjct: 67 SEAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRIM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + +TRF LACNN K+IEP+QSRC +LR T A+L+ + +ICEKE + + L
Sbjct: 127 DDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQDICEKEGVKSDTEAL 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+ ++ + D+R LN+LQ + VT V K + +++ G +
Sbjct: 187 KELITISGNDIRSCLNSLQLVMDANNKVVTVAGVQKALSTIDVKIINQVMKLLTSGKFDE 246
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLD--IPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ +I + GY +DI +FR A D I + ++ S+++ + ++H + V+S L
Sbjct: 247 GWALIDNQLNGGYNYDDIYNAMFRYALNSDTEINDVVRASMLRILASLHAKSKTTVSSPL 306
Query: 298 QLSGLLARL 306
QL LLA L
Sbjct: 307 QLCRLLAEL 315
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 182/295 (61%), Gaps = 3/295 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP +++ G +D ERL+ + + ++P+++ SGP GVGKTT+ + +AR + G +
Sbjct: 15 IEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGDDW 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++++ LDEAD++T AQ ALRRTM
Sbjct: 75 RENFLELNASDERGIDVVRDRIKNFA--RTSFGGYDYRVIFLDEADALTSDAQSALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++N TRF L+CN S +II+PIQSRCA+ R+ L + + V I +E I T+DG+
Sbjct: 133 EQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVERIAGEEGIEITDDGV 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P ++ M+ + + G+ +
Sbjct: 193 DALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAARPEQIETMVQHAIGGDFTAA 252
Query: 241 -YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
K+ L G D+I + R A + ++ + + +++ +G RI++G N
Sbjct: 253 RAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGETDYRITQGAN 307
>gi|159110203|ref|XP_001705363.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
gi|157433446|gb|EDO77689.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
Length = 322
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 186/309 (60%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IE+YRP+T ++GN + + RL+ F++ GN+PNI+ +G PG+GKTT LCLA +LG
Sbjct: 7 IERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLANQMLGAHR 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
A LELNAS++R + +R K+K FAQ++VTLP G K+V LDE D+MT+ AQQ LRR M
Sbjct: 67 SVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRIM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + +TRF LACNN K+IEP+QSRC +LR T A+L+ + EICEKE + + L
Sbjct: 127 DDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQEICEKEGVKSDTEAL 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHV-TAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+ ++ + D+R LN+LQ + V T V K + +++ G D
Sbjct: 187 KELISISGNDVRSCLNSLQLVADANNKVITVAGVQKALSTIDVKVIDQVMKLLTSGKFDD 246
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVA--KTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ +I + GY +DI +FR A +I + ++ S+++ + ++H + V+S L
Sbjct: 247 GWMLIDNQLNEGYNYDDIYNAMFRYALNSETEINDVVRASMLRILASLHAKSKTTVSSPL 306
Query: 298 QLSGLLARL 306
QL LLA L
Sbjct: 307 QLCRLLAEL 315
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT ++VG + + RLK + + N+PN++ +GP GVGKTTT + LA+ +LG +
Sbjct: 6 VEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K LELNAS+ RGI+TVR IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 66 KQNFLELNASDARGIETVRKDIKSFCRLKAVGSPFR--IIFLDEVDNMTKDAQHALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R+ + Q++ ++ I + EN+++ L
Sbjct: 124 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIERLEIIAKAENVNYAPGTL 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E+IV+ A+GDMR+A+N LQST + +T + V V + P V+ ++ ++G+ +
Sbjct: 184 ESIVYFAEGDMRRAVNILQSTASMGEEITEDIVHDVVSKAKPKDVRRIVNLALDGDFMGA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIF----RVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ + + G + ED++ ++ R+A I + +++ IG RI EG N
Sbjct: 244 RDLLREVMVVQGTSGEDMVTQVYQEVSRMAMDDLISSEDYIKLVEHIGEYDFRIREGANP 303
Query: 296 LLQLSGLLARL 306
+QL LL +
Sbjct: 304 RIQLEALLTKF 314
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 181/309 (58%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SGN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ TRF L N IIEPIQSR M+R++ L + +++ I + E + T+D
Sbjct: 124 IMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKITDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LEAI QGDMR+A+N LQ +T E V K P ++E L + GN
Sbjct: 184 ALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRETLNDAFRGNFG 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K + +I + G +I+ + R A LD+PE LK I I H I G + L
Sbjct: 244 KAATQIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAILRGAHGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIYGALAKI 312
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 185/305 (60%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D ++ F +G +P+++ GPPG GKT+T+L LAR L G ++
Sbjct: 57 VEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYGSAY 116
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K +LELNAS+DRGID VR +IK FA KV G K+VILDEAD MT AQ ALRR +
Sbjct: 117 KKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVI 175
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L + ++ KV E+ +KE ++ T DG
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTEDGR 235
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + V V+ PHP ++ ++ + + +
Sbjct: 236 DALLKLSRGDMRRALNVLQACHAAYDTVDETAVYNCTGNPHPRDIERVVQSMMADEFGTA 295
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D+I + T+++P+ ++ ++ +G+ R+S G + +QL
Sbjct: 296 YSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQL 355
Query: 300 SGLLA 304
+ LL
Sbjct: 356 TALLG 360
>gi|333987924|ref|YP_004520531.1| replication factor C small subunit [Methanobacterium sp. SWAN-1]
gi|333826068|gb|AEG18730.1| Replication factor C small subunit [Methanobacterium sp. SWAN-1]
Length = 322
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 192/314 (61%), Gaps = 8/314 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVF-SSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+EKYRPQT D+VG + + RLK + ++PN++ +GP GVGKTTT + LA+ +LG
Sbjct: 6 VEKYRPQTLDDVVGQDHIINRLKKYIKEETSMPNLMFTGPAGVGKTTTAIALAKAVLGEY 65
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGIDTVR+ IK F + K P R I+ LDE D+MT AQ ALRR
Sbjct: 66 WRQNFLELNASDARGIDTVRHNIKNFCRLKAVGAPFR--IIFLDEVDNMTKDAQHALRRE 123
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ T+ F L+CN S KII+PIQSRCA+ R+ + ++ ++ I EN+ +
Sbjct: 124 MEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPVKGRHVMGRLEAIAAAENLKISPGA 183
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+E+IV+ A+GDMR+A+N LQ++ + VT + V +V + P V++++ ++G+
Sbjct: 184 IESIVYFAEGDMRKAVNILQASSSMDEEVTEDSVHEVVSKAKPKDVRKIVNKALDGDFLG 243
Query: 240 SYKIIHH-LYKLGYAPEDIIGNIF----RVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+ ++ + G + ED++ I+ R+A IPE + + +I+ IG RI EG N
Sbjct: 244 ARDLLRESMVVQGTSGEDMVTQIYQEVSRMAMEELIPEDVYIDLIESIGEYDYRIREGAN 303
Query: 295 SLLQLSGLLARLCI 308
+QL LL + +
Sbjct: 304 PRIQLEALLTKFLL 317
>gi|424814736|ref|ZP_18239914.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758352|gb|EGQ43609.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 317
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 182/307 (59%), Gaps = 3/307 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP T S++VG E+ ++RL F ++P+++ +GP G GKTT+ + LA+ L G +
Sbjct: 7 EKYRPDTLSEVVGQEEIIDRLSAFVEEESIPHMLYAGPAGTGKTTSAVALAKDLYGDQWN 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+E NAS++RGID VR KIK FA+ K +KI+ LDEAD++T AQQALRRTME
Sbjct: 67 QNFMETNASDERGIDVVREKIKDFARTKPI--EAEYKIIFLDEADALTPDAQQALRRTME 124
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
++ RF L+CN S KII+PIQSRCA+ RYN+L + + + + I E E + D LE
Sbjct: 125 QFTENCRFILSCNYSSKIIDPIQSRCAVFRYNRLEEEDVKNYIQRIGESEGFKVSEDALE 184
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A++ + GD+R+ N LQ+ + E V+ V P + ++L ++ D+
Sbjct: 185 AVMRVSDGDLRRVTNVLQTASIQNSEIEEEDVYGVAASLRPEEITKILELALKERFMDAR 244
Query: 242 KIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ L + G +D+I +I R LDI E KL+II +G RISEG + +Q+
Sbjct: 245 DQLSDLMIERGLDGQDVIDSIHREVYDLDISEQAKLTIIDNLGEFEFRISEGGSPDIQIE 304
Query: 301 GLLARLC 307
LLA++
Sbjct: 305 ALLAKIA 311
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 179/306 (58%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + GP F
Sbjct: 25 VEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGPQF 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK-VTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+++VLELNAS+DRGID VR +IK FA K V G K+++LDEAD+MT AQ ALRR
Sbjct: 85 RNSVLELNASDDRGIDVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRRV 144
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII IQSRC R+N L Q+ ++ + E E + T DG
Sbjct: 145 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIESEGCNITQDG 204
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
EA++ ++GDMR+ALN LQ+ H H+ V+ PHP ++ +L + +E
Sbjct: 205 KEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPHDIEAILKSMMEDEFTT 264
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
++ + L G A DII + + T+ +P ++ ++ + + R+S G + +Q
Sbjct: 265 AFWTVSQLKTAKGIALADIITGFYDLLTTIKLPAKSRIYLLDHLADTEHRLSTGGSEKIQ 324
Query: 299 LSGLLA 304
L+ LL
Sbjct: 325 LTALLG 330
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 195/319 (61%), Gaps = 6/319 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RLK F +GN+P+++ GPPG GKTT L LAR L G ++
Sbjct: 9 FEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDAW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 69 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+NTTRF L N +II+PI SRCA+ R+ + + ++ I ++E I+ T D
Sbjct: 126 IMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGITVTED 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G++AI +QGDMR+A+N LQ V E V V P + ++ + G+++
Sbjct: 186 GIDAIYEISQGDMRRAINLLQMAAAASRSVDKESVAAVASAARPSEILDVFNTALSGDVE 245
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + + L Y G A D + + R + + + K+++ + + +V R++EG + L
Sbjct: 246 KAREKLRDLMYMKGIAGVDFLRALQRELPRIQLDDETKVAVAELLSDVDYRLAEGSDEEL 305
Query: 298 QLSGLLARLCIVGSKNKKT 316
QL+ +L +L +GSK K T
Sbjct: 306 QLTYMLVKLAAIGSKGKAT 324
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 184/312 (58%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP SD++G + + RL + N+P++I +GP G GKT+T + LA L G S+K
Sbjct: 7 EKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDSWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ +ELNASNDRGID +R+ IK FA+ + + G KI+ LDEAD +T AQ ALRRTME
Sbjct: 67 ENFMELNASNDRGIDIIRDNIKNFAKIRPSNDLG-FKIIFLDEADHLTGDAQAALRRTME 125
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
++ NTTRF +CN S KII PIQSRC +LR+ + + +++ +I +KEN +D L+
Sbjct: 126 MFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKENFEIDDDSLD 185
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
AI + GDMR+A+N LQ+ G V+A ++++ E + K ++ +EGN D+
Sbjct: 186 AIYEISDGDMRKAVNVLQAVKLS-GKVSATAIYEISGEINRDEYKNLINMAIEGNFNDAR 244
Query: 242 KIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ L G + DII + + I KL II + RI EG +Q+
Sbjct: 245 NYLDKMLIDYGLSGIDIIKGMHSSIRGEQIAYKQKLEIIMALAEAEFRIVEGGTDNIQMD 304
Query: 301 GLLARLCIVGSK 312
LLA+L +GS+
Sbjct: 305 ALLAKLSYIGSE 316
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 179/306 (58%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + GP F
Sbjct: 27 VEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFGPQF 86
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK-VTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+++VLELNAS+DRGI+ VR +IK FA K V G K+++LDEAD+MT AQ ALRR
Sbjct: 87 RNSVLELNASDDRGIEVVREQIKGFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRRV 146
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII IQSRC R+N L Q+ ++ + E E T DG
Sbjct: 147 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIENEGCKITQDG 206
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
EA++ ++GDMR+ALN LQ+ H H+ V+ PHP ++ ML + ++
Sbjct: 207 KEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPSDIEAMLKSMMQEEFTT 266
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L G A D+I ++ + T+ +P K+ ++ + + R+S G + +Q
Sbjct: 267 AYTTISGLKTAKGIALADMISGVYDLLATIKLPAKSKIYLLDHLAHTEHRLSTGGSEKIQ 326
Query: 299 LSGLLA 304
L+ LL
Sbjct: 327 LTALLG 332
>gi|361129755|gb|EHL01637.1| putative Replication factor C subunit 4 [Glarea lozoyensis 74030]
Length = 194
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/148 (72%), Positives = 127/148 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGN +T+ERLK+ + GN+P++IISG PG+GKTT++LCLAR +LG S+
Sbjct: 36 VEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQMLGDSY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VRN+IK FAQ+KVTLP GR K+VILDEADSMT GAQQALRRTM
Sbjct: 96 KEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRQKLVILDEADSMTSGAQQALRRTM 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCA 148
EIYS TTRFA ACN S KIIEP+QSR A
Sbjct: 156 EIYSATTRFAFACNQSNKIIEPLQSRYA 183
>gi|308160432|gb|EFO62923.1| Replication factor C, subunit 4 [Giardia lamblia P15]
Length = 322
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 189/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IE+YRP++ ++GN + + RL+ F++ GN+PNI+++G PG+GKTT LCLA +LG
Sbjct: 7 IERYRPRSLDGLIGNPEILARLRYFAAQGNLPNILLTGGPGLGKTTIALCLANQMLGAHR 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
A LELNAS++R + +R K+K FAQ++VTLP G K+V LDE D+MT+ AQQ LRR M
Sbjct: 67 SVAFLELNASDERNVSDIRAKVKTFAQKQVTLPTGIQKLVFLDECDAMTEAAQQVLRRIM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + +TRF LACNN K+IEP+QSRC +LR T A+L+ + EICEKE + + + L
Sbjct: 127 DDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPPTQAELVKYLQEICEKEGVKNDTEAL 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHV-TAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+ ++ + D+R LN+LQ + V T V K + +++ G D
Sbjct: 187 KELISISGNDVRSCLNSLQLVADANDKVITVAGVQKALSTIDVKVIDQVMNLLTSGKFDD 246
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKT--LDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ +I + GY +DI +FR A + +I + ++ S+++ + ++H + V+S L
Sbjct: 247 GWTLIDNQLNEGYNYDDIYNAMFRYALSSETEINDVVRASMLRILASLHAKSKTTVSSPL 306
Query: 298 QLSGLLARL 306
QL LLA L
Sbjct: 307 QLCRLLAEL 315
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 194/312 (62%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ S+I G ++ +++LK F +P+++ +G G GKT+T + LA L G S+K
Sbjct: 7 EKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGESWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ +E+NASN+ GID +RNKIK A+ + + P G KI+ LDEAD +T AQ ALRRTME
Sbjct: 67 ENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRTME 125
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+YS TTRF ACN S KII PIQSR ++R+ + D + K+ EI + E + ++ +E
Sbjct: 126 MYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESME 185
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+V + GDMR+A+N LQ+ + G ++ + ++++ P +V +++ + G ++
Sbjct: 186 AMVEVSGGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPESVNKLISRAINGLFDEAR 244
Query: 242 KIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I+ + + G + DI+ ++ + + +P K+ II+ + + RI EG N +QL
Sbjct: 245 QIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLD 304
Query: 301 GLLARLCIVGSK 312
L+AR+ +GSK
Sbjct: 305 ALIARIADIGSK 316
>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
DSM 2375]
gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
gi|222435032|gb|EEE42197.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2375]
gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
Length = 315
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 186/311 (59%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DI+G + V RL+ + ++PN++ +GP GVGKTTT + L + +LG +
Sbjct: 6 VEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVRN IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 66 RQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T F L+CN S KII+PIQSRCA+ R+ + ++ +++ IC E +T+ G+
Sbjct: 124 EMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSEGFEYTDGGI 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI + A+GDMR+A+N LQ+ + V + V++V + P V ++ + G+ +
Sbjct: 184 EAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFMGA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFR-VAKTL---DIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ L G + ED++ I++ V+K + + + + +I+ I + RI EG N
Sbjct: 244 RNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGANP 303
Query: 296 LLQLSGLLARL 306
+QL LL +
Sbjct: 304 RIQLEALLTQF 314
>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513780|sp|A5UMF3.1|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
smithii ATCC 35061]
Length = 315
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 186/311 (59%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DI+G + V RL+ + ++PN++ +GP GVGKTTT + L + +LG +
Sbjct: 6 VEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVRN IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 66 RQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T F L+CN S KII+PIQSRCA+ R+ + ++ +++ IC E +T+ G+
Sbjct: 124 EMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDGGI 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI + A+GDMR+A+N LQ+ + V + V++V + P V ++ + G+ +
Sbjct: 184 EAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFMGA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFR-VAKTL---DIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ L G + ED++ I++ V+K + + + + +I+ I + RI EG N
Sbjct: 244 RNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGANP 303
Query: 296 LLQLSGLLARL 306
+QL LL +
Sbjct: 304 RIQLEALLTQF 314
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 194/312 (62%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ S+I G ++ +++LK F +P+++ +G G GKT+T + LA L G S+K
Sbjct: 19 EKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGESWK 78
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ +E+NASN+ GID +RNKIK A+ + + P G KI+ LDEAD +T AQ ALRRTME
Sbjct: 79 ENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRTME 137
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+YS TTRF ACN S KII PIQSR ++R+ + D + K+ EI + E + ++ +E
Sbjct: 138 MYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESME 197
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+V + GDMR+A+N LQ+ + G ++ + ++++ P +V +++ + G ++
Sbjct: 198 AMVEVSGGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPESVNKLISRAINGLFDEAR 256
Query: 242 KIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I+ + + G + DI+ ++ + + +P K+ II+ + + RI EG N +QL
Sbjct: 257 QIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLD 316
Query: 301 GLLARLCIVGSK 312
L+AR+ +GSK
Sbjct: 317 ALIARIADIGSK 328
>gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 316
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 180/309 (58%), Gaps = 2/309 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ +++G + VERLK F GN PN+I +G GVGKTT+ + +A+ L
Sbjct: 5 EKYRPKSLDEVIGQKQIVERLKAFVKQGNFPNMIFAGSAGVGKTTSAIAMAKDLYDDDLN 64
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
A ELNAS+ RGID +R ++K FA+ +++ KI+ LDEAD++T AQ ALRRTME
Sbjct: 65 TAFKELNASDARGIDVIRGEVKNFAKT-ISIARVPVKIIFLDEADALTADAQHALRRTME 123
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+S TRF L+ N + KIIEPIQSRC + R+ LT+ + V I + E I+ + +E
Sbjct: 124 KFSAETRFILSANYASKIIEPIQSRCVVFRFKPLTEDDMKEYVNRIVKGEGITLEKNAME 183
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+++ GD+R+ N LQS +T ++ V P + ML V+G+ +
Sbjct: 184 ALIYVGDGDLRKLTNVLQSAAMKSEKITEGDIYDVASRARPKEIMSMLRYAVDGDFDKAR 243
Query: 242 KIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ L K G + EDI+ +R A+ L E LKL II IG + RI EG N +QL
Sbjct: 244 NELDTLTLKHGMSGEDILTQCYREAQNLHFDEKLKLKIIIYIGEANFRIVEGANERIQLE 303
Query: 301 GLLARLCIV 309
+LA++ ++
Sbjct: 304 SMLAQIAML 312
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 187/312 (59%), Gaps = 4/312 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-- 58
+EKYRP T D+V ++D ++ ++ F S+ +P+++ GPPG GKT+TIL +AR L
Sbjct: 32 VEKYRPSTLDDVVSHQDIIQTIQKFISANQLPHLLFYGPPGTGKTSTILAVARQLFQTPM 91
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
SFK+ +LELNAS+DRGID VR +IK FA ++ G K++ILDEAD MT AQ ALRR
Sbjct: 92 SFKNNILELNASDDRGIDVVREQIKNFASARMVFSSG-FKLIILDEADQMTQAAQSALRR 150
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ RF + CN +I IQSRC R+ L ++ ++ + + E++ ++D
Sbjct: 151 VIEQYTKNVRFCIICNYVNRINPAIQSRCTRFRFGPLDHPEIERRIAHVADAESVKISDD 210
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G +A++ +GDMR+ LN +Q+ H+G+G V + V++ PHP +++++ + + +
Sbjct: 211 GRKALLNLCKGDMRRVLNVMQACHSGYGKVDEDAVYECTGSPHPKQIEKIVESMMNDEFQ 270
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S+K I + G A +DII I+ +T+ + ++ I+ ++ + R+S G +
Sbjct: 271 TSFKRIQDIKINYGLALQDIISGIYDYLRTIVFEKNAQIYILDQLSQIEHRLSTGATEKI 330
Query: 298 QLSGLLARLCIV 309
QLS LL I
Sbjct: 331 QLSSLLGSFRIA 342
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ TRF L N IIEPIQSR M+R++ L + +++ I + E + ++D
Sbjct: 124 IMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LEAI QGDMR+A+N LQ +T E V K P ++E L + GN
Sbjct: 184 ALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRETLNDAFRGNFG 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K + +I + G +I+ + R A LD+PE LK I I H I G + L
Sbjct: 244 KAATQIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAILRGAHGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIYGALAKI 312
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F +GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N IIEPIQSR M+R++ L + +++ I E E + ++D
Sbjct: 124 IMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LEAI QGDMR+A+N LQ VT E V K P ++E L V+G+
Sbjct: 184 ALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVKGSFG 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K + +I + G +II I R LD+ E +K I I H I G + L
Sbjct: 244 KAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAILRGAHGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIYGALAKV 312
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 194/318 (61%), Gaps = 9/318 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T ++V + V RLK F S N+P+++ +GPPG GKTT CLA L G +++
Sbjct: 10 EKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGDNYR 69
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++RGI+ +R+K+K FA+ +V +P KI++LDEAD+MT AQQALRR
Sbjct: 70 QYILELNASDERGIEVIRSKVKEFARTRVVGNVP---FKIILLDEADNMTADAQQALRRL 126
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ +TRF L N KIIEPIQSR A+ R+ L ++ ++ IC E + D
Sbjct: 127 MELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNEKVKCHEDA 186
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L I ++GDMR+A+N LQ++ G T E V+KV HP V+EM+ + GN +
Sbjct: 187 LNTIFELSEGDMRRAINILQAS-AALGEATVENVYKVVGLAHPREVREMIQLALSGNFAE 245
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + L G + D++ I + + + IP+ +K+ I +G + R+ EG +
Sbjct: 246 ARNKLRTLMITYGLSGVDVVKQIHKEIFSSDIKIPDEIKIVIADLVGEIQFRLVEGADDE 305
Query: 297 LQLSGLLARLCIVGSKNK 314
+QL+ LLARL ++G K K
Sbjct: 306 IQLNALLARLALIGKKFK 323
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ + +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 261 AYKSIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQ 320
Query: 299 LSGLLA 304
LS L+A
Sbjct: 321 LSSLIA 326
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 178/309 (57%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SGN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N IIEPIQSR M+R+N L ++S++ I E E + ++D
Sbjct: 124 IMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
LE I QGDMR+A+N LQ +T + V + P ++E L ++GN
Sbjct: 184 ALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALKGNFS 243
Query: 239 DSYKIIHHLYKLGYAPE-DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ I+ G E +II I R LD+PE +K + I H G L
Sbjct: 244 KAMTQIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATLRGARGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIFGALAKI 312
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E ++ + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 188/307 (61%), Gaps = 4/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-- 58
+EKYRP T ++V ++D + ++ F +S +P+++ GPPG GKT+TIL +AR L
Sbjct: 28 VEKYRPSTLEEVVSHKDIIYTIQKFITSNRLPHLLFYGPPGTGKTSTILAIARQLYQTPM 87
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
SFK+ VLELNAS+DRGI+ VR +IK FA ++ G K++ILDEAD MT AQ ALRR
Sbjct: 88 SFKNNVLELNASDDRGIEVVREQIKNFASARMVFSSG-FKLIILDEADQMTTTAQSALRR 146
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ RF + CN +I IQSRC R+ L ++ +V ++ + EN+ T D
Sbjct: 147 VIEQYTKNVRFCIICNYVNRISPAIQSRCTKFRFGPLDLPEVDRRVGQVIDSENLVVTED 206
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G +A++ +GDMR+ LN +Q+ H+G+G V + V++ PHP +++++ + + +
Sbjct: 207 GRKALLNLCKGDMRRVLNVMQACHSGYGKVDEDSVYECTGSPHPKQIEDIVKSMMNEEFQ 266
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S+K I + G A +DII I+ KT+++ ++ ++ ++ + R+S G + L
Sbjct: 267 TSFKRIQDIKVNFGLALQDIILGIYEFLKTVELGNLAQIYLLDQLSQIEYRLSTGGSEKL 326
Query: 298 QLSGLLA 304
QLSGLL
Sbjct: 327 QLSGLLG 333
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ + +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 261 AYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQ 320
Query: 299 LSGLLA 304
LS L+A
Sbjct: 321 LSSLIA 326
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A +DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALQDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GKT+TIL AR L
Sbjct: 17 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQSTH +G VT E V+ P + +L + +
Sbjct: 196 MKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSDIANILDWALNKDFTT 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L L G A DI+ + + + +D P +++ ++ ++ ++ R++ G + +Q
Sbjct: 256 AYNQILELKTLKGLALHDILTEVHLLIRRVDFPPSIRMGLLIKLADIEYRLASGTSEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 21 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 81 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRG-FKLVILDEADAMTQDAQNALRRV 139
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG
Sbjct: 140 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 199
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 200 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 259
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ + +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 260 AYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRLSVGTSEKIQ 319
Query: 299 LSGLLA 304
LS L+A
Sbjct: 320 LSSLIA 325
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 190/317 (59%), Gaps = 6/317 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F++IV E+ RL F +GN+P+++ GPPG GKTTT L LAR L G +
Sbjct: 9 FEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGERW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G K+V+LDEAD+MT AQQALRR
Sbjct: 69 RENTLELNASDERGINVIRERVKEFAR---TAPAGGAPFKLVVLDEADNMTSDAQQALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ TTRF L N +II+PI SRCA+ R+ + + ++ I +E I T D
Sbjct: 126 IMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERIKLTED 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G++AI +QGDMR+A+N LQ G V E V V P + E+ G+++
Sbjct: 186 GIDAIYEISQGDMRRAINLLQMAAASAGVVDKESVAAVASAAKPSEILEIFNLAFSGDVE 245
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + + L Y G A DI+ + R L I E K ++ + + +V LR+ EG + L
Sbjct: 246 KARERLRDLMYMRGIAGIDILKALQRELPRLQIDEETKAAVAELLADVDLRLVEGSDEEL 305
Query: 298 QLSGLLARLCIVGSKNK 314
QL+ +L +L +G++ +
Sbjct: 306 QLTYMLVKLAALGARAR 322
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P+++ GPPG GKT+TIL C R+
Sbjct: 139 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKRLYKDKE 198
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 199 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 257
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 258 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 317
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 318 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNHDFTT 377
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 378 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIYLLTKMADIEYRLSVGTNEKIQ 437
Query: 299 LSGLLA 304
LS L+A
Sbjct: 438 LSSLIA 443
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 180/306 (58%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + GP F
Sbjct: 26 VEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGPQF 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK-VTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+++VLELNAS+DRGI+ VR +IK FA K V G K+++LDEAD+MT AQ ALRR
Sbjct: 86 RNSVLELNASDDRGIEVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRRV 145
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII IQSRC R+N L Q+ ++ + + E T DG
Sbjct: 146 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIDTEGCKITQDG 205
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
EA++ ++GDMR+ALN LQ+ H ++ V+ PHP V+ +L + +E
Sbjct: 206 KEALLKLSRGDMRRALNVLQACHAASDNIDETAVYNCTGNPHPQDVEAVLKSMMEDEFTT 265
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+++ + L G A D+I ++ + T+ +P ++ ++ + + R+S G + +Q
Sbjct: 266 AFRTVSELKTAKGIALADMISGVYDLLATIKLPAKSRIYLLDHLADTEHRLSTGGSEKIQ 325
Query: 299 LSGLLA 304
L+ LL
Sbjct: 326 LTALLG 331
>gi|451927446|gb|AGF85324.1| replication factor C small subunit [Moumouvirus goulette]
Length = 322
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 186/306 (60%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP T +I+ + + +++ +F ++I +GPPG+GKT+T C+A+ +LG
Sbjct: 8 IEKYRPATIDEIIFDINIRKQINIFLEDKKNVHLIFTGPPGIGKTSTARCIAKTMLGEHM 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LE+NA+ DRG+ ++ +I F ++ + KI++LDEAD MT Q + +
Sbjct: 68 QAGYLEINAAEDRGVRSMSTRIPPFCKKVIDFTTS--KIILLDEADIMTSKCQYDINNMI 125
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + N T+F CN+S KIIE +QS C +LR+ KLTD Q+ S + +ICEKE I + GL
Sbjct: 126 KEFGNKTKFIFTCNDSTKIIEDLQSVCRILRFKKLTDNQISSYLSKICEKEKIEYDKSGL 185
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ I + + GDMR+++N+LQ T + VT V K+C P P +K+++ C++GN+ ++
Sbjct: 186 DTIYYISYGDMRKSINDLQKTACTYNKVTKNTVLKICRVPDPEEIKKIINLCLKGNLMEA 245
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
K ++ + KL + DI+ + V T D+ E KL +I + +S+G++S LQLS
Sbjct: 246 DKEMNDIIKLDFCYFDIVSSFVYVLSTYDMEECFKLQLIDIVNKTKTNVSKGLHSRLQLS 305
Query: 301 GLLARL 306
G++ R+
Sbjct: 306 GMICRI 311
>gi|441432354|ref|YP_007354396.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383434|gb|AGC01960.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 322
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 186/306 (60%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP T +I+ + + +++ +F ++I +GPPG+GKT+T C+A+ +LG
Sbjct: 8 IEKYRPATIDEIIFDINIRKQINIFLEDKKNVHLIFTGPPGIGKTSTARCIAKTMLGEYM 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LE+NA+ DRG+ ++ +I F ++ V KI++LDEAD MT Q + +
Sbjct: 68 EAGYLEINAAEDRGVRSMSTRIPPFCKKVVDFTTS--KIILLDEADIMTSKCQYDINNMI 125
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + T+F CN+S KIIE +QS C +LR+ KLTD Q+ S + +ICEKENI + GL
Sbjct: 126 KEFGKKTKFIFTCNDSTKIIEDLQSVCRILRFKKLTDQQISSYLSKICEKENIEYDKPGL 185
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ I + + GDMR+++N+LQ T + VT V K+C P P +K+++ C++GN+ ++
Sbjct: 186 DTICYISYGDMRKSINDLQKTACTYNKVTKNTVLKICRVPDPEEIKKIIALCLKGNLMEA 245
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
K ++ + KL + DI+ + V + D+ E KL +I + +S+G++S LQLS
Sbjct: 246 DKEMNDIIKLDFCYFDIVSSFVYVLSSYDMDECFKLQLIDIVNKTKTNVSKGLHSRLQLS 305
Query: 301 GLLARL 306
G++ R+
Sbjct: 306 GMICRI 311
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 21 VEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 81 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 139
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG
Sbjct: 140 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 199
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 200 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 259
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ + +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 260 AYRHIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQ 319
Query: 299 LSGLLA 304
LS L+A
Sbjct: 320 LSSLIA 325
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 183/308 (59%), Gaps = 10/308 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DI+ + R+K ++GN+P+++ GPPG GKTT L +AR L G ++
Sbjct: 9 VEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDAW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ VLELNAS++RGI +R K+K FA+ T+P + +++ILDEAD+MT AQQALRR
Sbjct: 69 RENVLELNASDERGIAMIREKVKEFAK---TMPTVKAPFRLIILDEADNMTPDAQQALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ + RF L N IIEPIQSRC++ R++ L +L ++ EI KE + T+D
Sbjct: 126 IMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKEGVKVTDD 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
LEAI +QGDMR+A+N LQ+ + G V E V+K + P V+ ++ V G+
Sbjct: 186 ALEAIWDVSQGDMRKAINTLQAAASLGGVVDEEVVYKALGKVSPTKVRTIVTEAVVGDFG 245
Query: 239 DSYKIIHHLYK-LGYAPEDIIGNIFR----VAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ + + L + G P DII I R A L +PE LK + + H R+ G
Sbjct: 246 KAVREVMSLIRDEGADPLDIIKIIHREVVSAASQLKVPEELKPKAVYIVSEHHYRLLRGS 305
Query: 294 NSLLQLSG 301
+ LQ+ G
Sbjct: 306 SGELQVYG 313
>gi|223477952|ref|YP_002582171.1| replication factor C small subunit [Thermococcus sp. AM4]
gi|214033178|gb|EEB74006.1| Replication factor C small subunit [Thermococcus sp. AM4]
Length = 870
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 178/288 (61%), Gaps = 9/288 (3%)
Query: 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ 88
GN+P ++ + TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 591 GNLPTVLHN-------TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 89 KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCA 148
K + KI+ LDEAD++T AQQALRRTME++SN RF L+CN S KIIEPIQSRCA
Sbjct: 644 K-PVAGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCA 702
Query: 149 MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHV 208
+ R+ L D + ++ I E+E + T +GL+AI++ A+GD+R+A+N LQ+ +
Sbjct: 703 IFRFRPLNDEDIAKRIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKI 762
Query: 209 TAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT 267
T E VF V P V+EM+ +EGN +K K+ L K G + ED++ + +
Sbjct: 763 TDENVFLVASRARPEDVREMMTLALEGNFLKAREKLREVLLKQGLSGEDVLIQMHKEVFN 822
Query: 268 LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKNKK 315
L IPE K+++ +IG + R+ EG N ++QL LLA+ I+G K K
Sbjct: 823 LPIPEDKKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIMGDKKGK 870
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ DIVG E V+RLK ++ +G++P+++ +GPPGVGK T
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGVGKCLT 62
>gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM
3091]
gi|110287813|sp|Q2NH89.1|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 187/314 (59%), Gaps = 7/314 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT D+VG E V RLK + ++PNI+ +G GVGKTT L LA+ LLG +
Sbjct: 6 VEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVRN+IK F + K P R I+ LDE D+MT AQQALRR M
Sbjct: 66 QQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFR--IIFLDEVDNMTKDAQQALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R++ + A ++ ++ I +E I L
Sbjct: 124 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSAL 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E IV+ QGDMR+++N LQ++ VT E V+ V P V++++ + + ++
Sbjct: 184 ENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFMEA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLD----IPEPLKLSIIQEIGNVHLRISEGVNS 295
++ + + G + +D+I ++ + IPE + +++ + RI EG N
Sbjct: 244 RDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGSNP 303
Query: 296 LLQLSGLLARLCIV 309
LQL LL++ +V
Sbjct: 304 RLQLEALLSKFLLV 317
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GKT+TIL AR L
Sbjct: 17 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQSTH +G VT E V+ P + +L + +
Sbjct: 196 MKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSDIANILDWALNKDFTT 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L L G A DI+ + + +D P +++ ++ ++ ++ R++ G + +Q
Sbjct: 256 AYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADIEYRLASGTSEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG-PS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GKT+TIL AR L
Sbjct: 17 VEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLYKEKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++ENI T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVIQQENIDITPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++ IV + GDMR++LN LQST +G VT + V+ P + +L C+ +
Sbjct: 196 MKGIVTLSTGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANILDWCLNKDFTS 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L L G A DI+ + + +D P +++S++ ++ +V R++ G + +Q
Sbjct: 256 AYNQILELKTLKGLALHDILTEVHLLVHRVDFPPAIRISLLIKLADVEHRLASGTSEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SG++P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N IIEPIQSR M R++ L + +++ I E E + ++D
Sbjct: 124 IMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGVKISDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LE I QGDMR+A+N LQ + VT E V + P ++E L V+G+
Sbjct: 184 ALETIYEFTQGDMRRAINALQIAASVDKEVTEEVVARALGMVSPRLLREALHEAVKGSFG 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K + +I + G +II I R LD+PE +K + I H I G + L
Sbjct: 244 KAATQIYGFVVDGGVGELEIIKQIHREVLRLDVPEYVKPELAYIIAEAHYAILRGAHGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIYGALAKV 312
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 183/309 (59%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILEWMLNQDFTT 261
Query: 240 SYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+Y+ I ++ +L G A DI+ I +D P +++ ++ ++ ++ R+S G N
Sbjct: 262 AYRNILYIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLSLGTNE 321
Query: 296 LLQLSGLLA 304
+QLS L+A
Sbjct: 322 KIQLSSLIA 330
>gi|424812315|ref|ZP_18237555.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756537|gb|EGQ40120.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 317
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 182/304 (59%), Gaps = 3/304 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP T ++VG +D VERL+ F G +P+++ SGP G GKTT+ + +A+ L G ++
Sbjct: 9 EKYRPDTLDEVVGQQDIVERLQAFVEEGQIPHLMFSGPAGTGKTTSAVSVAKDLYGSEWR 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
E NAS++RGID VR++IK FA+ K +K++ LDEAD++T AQQALRRTME
Sbjct: 69 QNFKETNASDERGIDVVRDQIKSFARTKPV--NAEYKMIFLDEADALTTDAQQALRRTME 126
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+S+ RF L+CN S KII+PIQSRCA+ R+N+L + Q+ + + E E + + ++
Sbjct: 127 QFSDNARFVLSCNYSSKIIDPIQSRCALFRFNRLEEEQVRRYITRVAEGEGFRISEEAIQ 186
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
++ + GD+R+ N LQ+ + + ++ P ++E+L + + D+
Sbjct: 187 GVMRVSGGDLRRTTNVLQTVALRKDEIEEDDIYTAAASLRPQEIREILKLALNQDFIDAR 246
Query: 242 KIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ + L G +D+I + R LDIP+ K+ +++ +G RI+EG ++ +Q+
Sbjct: 247 EKLSELMIDRGLDGKDVIDAVHRELFDLDIPDEAKMEMVEFLGEYQFRIAEGGSNDIQIE 306
Query: 301 GLLA 304
+LA
Sbjct: 307 AMLA 310
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNRDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVGISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNRDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 174/307 (56%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SGN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGI+ +R ++K FA+ P K+VILDEAD+MT AQQALRR M
Sbjct: 67 RENTLELNASDERGINVIRERVKEFARTAPIKAP--FKLVILDEADNMTSDAQQALRRIM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+ TRF L N IIEPIQSR M+R+N L +++++ I E E I ++D L
Sbjct: 125 EIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEGIKASDDAL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E I QGDMR+A+N LQ +T E V K P ++E L V G+ +
Sbjct: 185 ETIFEFTQGDMRKAINALQIAAATSREITEETVAKALGLVSPKLLRETLHEAVRGSFSKA 244
Query: 241 YKIIHHLYKLGYAPE-DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I+ G E +I+ I R LD+PE +K + + H G L Q+
Sbjct: 245 MTQIYGFVVDGGVGELEILKQIHREVLRLDVPEYVKPDLAYIVAEAHYATLRGARGLAQI 304
Query: 300 SGLLARL 306
G LA++
Sbjct: 305 YGALAKV 311
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 120
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
Query: 299 LSGLLA 304
LS L+A
Sbjct: 301 LSSLIA 306
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFAT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|403224069|dbj|BAM42199.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 347
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 182/322 (56%), Gaps = 15/322 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+TF DI+ +ED + L VF+ G +P+++ GPPG GKT+TI+ +AR L G
Sbjct: 10 VEKYRPETFQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGAGKTSTIMAIARYLYGSQR 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL---------PPGRHKIVILDEADSMTDG 111
VLELNAS++RGIDTVR +IK F++ T P K++ILDEAD MT+
Sbjct: 70 NGFVLELNASDERGIDTVREQIKSFSETSNTFSSTSANEDPPRTTLKLIILDEADQMTNA 129
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR MEIYSN RF L CN KII PIQSRC R+ L + K+ +I E
Sbjct: 130 AQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQKIKDIAAIE 189
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVK 226
+S + L+ +V QGDMR+ LN LQ T + + + + P L +
Sbjct: 190 KVSVSECALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSGLPKTLEID 249
Query: 227 EMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNV 285
+L + ++ + K+ ++ L+ GY+ ED++ +++ +D P + ++ + ++
Sbjct: 250 HLLQSLMQNSFKECVDELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQLLIRLADI 309
Query: 286 HLRISEGVNSLLQLSGLLARLC 307
R+S G N+ +Q++ L++
Sbjct: 310 EERLSSGANTSIQIAALVSSFA 331
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 183/305 (60%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + +IV +D V +K F +P+++ GPPG GKTTTI+ +A++L G S
Sbjct: 24 VEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYGSSH 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
VLELNAS+DRGI+ VR +IK+FA K G K+VILDEAD+MT+ AQ ALRR +
Sbjct: 84 SSMVLELNASDDRGINVVREQIKVFAGTKKLFHTG-VKLVILDEADNMTNAAQFALRRII 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS TRF L CN +II +QSRC R+ L + S+++ I +EN+ +DG+
Sbjct: 143 EKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQENVEFDDDGV 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ ++GDMR+ +N LQ+T FG VTAE+V++ P P ++ +L + + + D+
Sbjct: 203 AALLALSRGDMRRVINVLQATAMAFGKVTAEHVYRCAGMPSPADMELVLSSLMAKSYGDA 262
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K + L K +A DI+ + + + P + + +E+ ++ +R++ G +QL
Sbjct: 263 LKTLEELQRKKMFAMSDILTELVGKLQEVSFPPAVDAFLYRELADLEVRLNAGTQEEIQL 322
Query: 300 SGLLA 304
L+
Sbjct: 323 RSLVG 327
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 24 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 83
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 84 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 142
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + +EN+ T DG
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEENVDITEDG 202
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V P + +L + +
Sbjct: 203 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVHTCTGHPLRSDIANILDWMLNQDFTT 262
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 263 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKIQ 322
Query: 299 LSGLLA 304
LS L+A
Sbjct: 323 LSSLIA 328
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 60
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 61 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 119
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++E + + DG
Sbjct: 120 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDLSEDG 179
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V A GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 180 MKALVTLASGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 239
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 240 AYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKIQ 299
Query: 299 LSGLLA 304
LS L+A
Sbjct: 300 LSSLIA 305
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + +E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 261 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKIQ 320
Query: 299 LSGLLA 304
LS L+A
Sbjct: 321 LSSLIA 326
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDLSEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V A GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLASGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|289192114|ref|YP_003458055.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
FS406-22]
gi|288938564|gb|ADC69319.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
FS406-22]
Length = 864
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 175/285 (61%), Gaps = 13/285 (4%)
Query: 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ 88
GN+P ++ TT LCLAR L G +++D LELNAS++RGID +R K+K FA+
Sbjct: 589 GNLPTVL-------HNTTAALCLARDLFGENWRDNFLELNASDERGIDVIRTKVKDFART 641
Query: 89 KVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSR 146
K P G KI+ LDE+D++T AQ ALRRTME YS+ RF L+CN +II PIQSR
Sbjct: 642 K---PIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFILSCNYPSRIIPPIQSR 698
Query: 147 CAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG 206
CA+ R++ L + K+ EI EKE ++ T GLEAI++ ++GDMR+A+N LQ+
Sbjct: 699 CAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALSD 758
Query: 207 HVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVA 265
+ E V+KV P VK+M+ ++G ++ +++ L + G + EDI+ +FR
Sbjct: 759 VIDDEIVYKVSSRARPEEVKKMMQLALDGKFIEARDLLYKLMVEWGMSGEDILNQMFREI 818
Query: 266 KTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310
+LDI E K+ + IG RI EG N +QLS LLA++ ++G
Sbjct: 819 NSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALMG 863
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRP+T DIVG ++ V+RLK + ++P+++ SGPPGVGK T
Sbjct: 6 VEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 52
>gi|300707639|ref|XP_002996019.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
gi|239605277|gb|EEQ82348.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
Length = 305
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 189/311 (60%), Gaps = 19/311 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP+ ++GN DT+E LK ++P+++ +GPPG GKT++ A LLG
Sbjct: 5 VNKYRPKDLESVIGNVDTLETLKCILKDHSMPHLLFTGPPGTGKTSSAKIFAFQLLGS-- 62
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ +LELNAS+DRGIDTVR IK FA +K+ P KI+ILDE DSMT AQQA+RR M
Sbjct: 63 KEGILELNASDDRGIDTVRTLIKDFAMKKILNVP--FKIIILDECDSMTTAAQQAMRRIM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC-----EKENISH 175
EIYS+ +F L CN+ KI EPIQSRCA+LR++K+ SKVIE C + E+++
Sbjct: 121 EIYSSECKFILICNDFSKIFEPIQSRCAVLRFDKIE-----SKVIESCLQKIVQAEHMNI 175
Query: 176 TNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
T++ L I++ GD+RQ+LN LQ+ + + Y+ K+ P P +KE+L
Sbjct: 176 TDEALSFIIYICDGDIRQSLNILQACLHIPNLIDENYIVKLIGIPSPKLIKEVLDLLTIK 235
Query: 236 NMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ + + + L++ Y PED+I + FR+AK + E +K+ IG H++I +G +S
Sbjct: 236 KVDKAIERFNKLWEDKYDPEDLITSFFRMAKNDENYEAVKI-----IGLTHIKIVKGNHS 290
Query: 296 LLQLSGLLARL 306
L G+ L
Sbjct: 291 KLLFYGMFYDL 301
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT SD++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 24 VEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 83
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 84 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 142
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDVSEDG 202
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST F VT E V+ P + +L + +
Sbjct: 203 MKALITLSSGDMRRALNILQSTSMAFSKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 262
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 263 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSAGTSEKIQ 322
Query: 299 LSGLLA 304
LS L+A
Sbjct: 323 LSSLIA 328
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 188/317 (59%), Gaps = 8/317 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ DI+ E+ + LK F N+P+++ +GPPG GKTT L LA L G +++
Sbjct: 6 EKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDAWR 65
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+ LELNAS++RGID +R+K+K FA+ K P G KIV LDEAD++T AQQALRR
Sbjct: 66 ENFLELNASDERGIDVIRHKVKEFARAK---PIGDVPFKIVFLDEADALTRDAQQALRRI 122
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME YS +TRF L+CN KIIEPIQSR + ++ L + I + E + N+
Sbjct: 123 MEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILENED 182
Query: 180 --LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
+ A+ A+GD+R+A+N LQ+ +T + ++++ P + E+L ++GN
Sbjct: 183 EIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQGNF 242
Query: 238 KDSYK-IIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
++ +I + K G + ED+I I + +L I + KL I+ +IG++ RI EG + L
Sbjct: 243 LEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRIVEGADDL 302
Query: 297 LQLSGLLARLCIVGSKN 313
+QL LLA L + KN
Sbjct: 303 VQLDALLAWLGLGKYKN 319
>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
Length = 347
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 186/321 (57%), Gaps = 19/321 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T DI+ +ED + L +F+ G +P+++ GPPG GKT+TIL ++R L G
Sbjct: 10 VEKYRPETLQDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGSGKTSTILAISRYLYGSQR 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--------PPGRH-KIVILDEADSMTDG 111
VLELNAS++RGIDTVR++IK F++ T PP + K++ILDEAD MT+
Sbjct: 70 NGFVLELNASDERGIDTVRDQIKAFSETSNTFTSTMPVDDPPRTNLKLIILDEADQMTNA 129
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR MEIYSN RF L CN KII PIQSRC R+ L + ++ EI + E
Sbjct: 130 AQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREIAKLE 189
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVK 226
N+ T+ L+A+V QGDMR+ LN LQ T + A + P +
Sbjct: 190 NVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLPQSSEID 249
Query: 227 EMLLNCVEGNMKD---SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIG 283
+L + ++ + K+ ++HH K GY+ EDI+ +++ +D P + ++ +
Sbjct: 250 HLLKSLMQNSFKECIYELSVLHH--KKGYSLEDIVRLLYKSIVKIDWPNVPIVQLLIRLA 307
Query: 284 NVHLRISEGVNSLLQLSGLLA 304
+V R++ G NS +Q++ +++
Sbjct: 308 DVEERLAAGANSNIQIASIVS 328
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDVSEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara]
gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata]
Length = 347
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 185/321 (57%), Gaps = 19/321 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T DI+ +ED + L VF+ G +P+++ GPPG GKT+TIL ++R + G S
Sbjct: 10 VEKYRPETLQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGSGKTSTILAISRYMYGNSR 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--------PPGRH-KIVILDEADSMTDG 111
VLELNAS++RGIDTVR++IK F++ T PP + K++ILDEAD MT+
Sbjct: 70 NGFVLELNASDERGIDTVRDQIKAFSETSNTFTSSIPVEDPPRTNLKLIILDEADQMTNA 129
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR MEIYSN RF L CN KII PIQSRC R+ L + + EI + E
Sbjct: 130 AQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDVVRERTKEIAKLE 189
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVK 226
N+ T+ L+A+V QGDMR+ LN LQ T V A + P +
Sbjct: 190 NVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHSSKTDFTVDANLILSTSGLPQSSEID 249
Query: 227 EMLLNCVEGNMKD---SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIG 283
+L + ++ K+ ++HH K G++ EDI+ +++ +D P + ++ +
Sbjct: 250 HLLKSLMQNTFKECIYELNLLHH--KKGHSLEDIVKGLYKCVVKIDWPNVPIIQLLIRLA 307
Query: 284 NVHLRISEGVNSLLQLSGLLA 304
+V R+S G NS +Q++ +++
Sbjct: 308 DVEERLSAGANSNIQIASIVS 328
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 262 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDVSEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 262 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 190/312 (60%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ S+I G ++ +++LK F +P+++ +G G GKT+T + LA L G S+K
Sbjct: 7 EKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDSWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ ++E+NASN+ GID +RNKIK A+ K + P G KI+ LDEAD +T AQ ALRRTME
Sbjct: 67 ENMVEMNASNENGIDVIRNKIKDIARIKPSNPLG-FKILFLDEADQLTAEAQAALRRTME 125
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
IYS TTRF +CN S KII PIQSR ++R+ + D + K+ EI + E + +
Sbjct: 126 IYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMH 185
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+V + GDMR+A+N LQ+ + G ++ + ++++ P +++M+ + G ++
Sbjct: 186 ALVEVSAGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPEKIQKMISRAINGLFDEAR 244
Query: 242 KIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I+ L G + DI+ ++ ++ I K+ II+ + + RI EG N +QL
Sbjct: 245 EIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDRIQLD 304
Query: 301 GLLARLCIVGSK 312
L+A+L +GS+
Sbjct: 305 ALIAKLAEIGSR 316
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRPQ S++V + D + ++ F S +P++++ GPPG GKT+TIL AR L
Sbjct: 12 VEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYRERE 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 72 FSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 130
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++E + T DG
Sbjct: 131 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVTEDG 190
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST FG VT E V+ P + +L + +
Sbjct: 191 MKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFST 250
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A +DI+ I +D P +++ ++ ++ ++ R++ G + +Q
Sbjct: 251 AYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADIEYRLAAGTSEKIQ 310
Query: 299 LSGLLA 304
LS L+A
Sbjct: 311 LSSLIA 316
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 190/312 (60%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ S+I G ++ +++LK F +P+++ +G G GKT+T + LA L G S+K
Sbjct: 19 EKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDSWK 78
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ ++E+NASN+ GID +RNKIK A+ K + P G KI+ LDEAD +T AQ ALRRTME
Sbjct: 79 ENMVEMNASNENGIDVIRNKIKDIARIKPSNPLG-FKILFLDEADQLTAEAQAALRRTME 137
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
IYS TTRF +CN S KII PIQSR ++R+ + D + K+ EI + E + +
Sbjct: 138 IYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMH 197
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+V + GDMR+A+N LQ+ + G ++ + ++++ P +++M+ + G ++
Sbjct: 198 ALVEVSAGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPEKIQKMISRAINGLFDEAR 256
Query: 242 KIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I+ L G + DI+ ++ ++ I K+ II+ + + RI EG N +QL
Sbjct: 257 EIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDRIQLD 316
Query: 301 GLLARLCIVGSK 312
L+A+L +GS+
Sbjct: 317 ALIAKLAEIGSR 328
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ + D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 25 VEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 84
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 85 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 143
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVYVSEDG 203
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 204 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 263
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L + G A DI+ I +D P +++ ++ ++ ++ R++ G N +Q
Sbjct: 264 AYRNIMELKTVKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLAVGTNEKIQ 323
Query: 299 LSGLLA 304
LS L+A
Sbjct: 324 LSSLIA 329
>gi|429329431|gb|AFZ81190.1| replication factor C subunit 3, putative [Babesia equi]
Length = 345
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 184/317 (58%), Gaps = 13/317 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+TF DI+ +ED + L +F+ G +P+++ GPPG GKT+TI+ ++R L G
Sbjct: 10 VEKYRPETFEDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGTGKTSTIMAISRYLYGNQK 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---------KIVILDEADSMTDG 111
VLELNAS++RGIDTVR +IK F++ T K++ILDEAD MT+
Sbjct: 70 NGFVLELNASDERGIDTVREQIKAFSETTNTFSNTSAQDSNIKTTLKLIILDEADQMTNA 129
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR MEIYS+ RF L CN KII PIQSRC R+ L + ++ +I E E
Sbjct: 130 AQNALRRIMEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFVRKRIRDIAEME 189
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH---VTAEYVFKVCDEPHPLAVKEM 228
N+ ++ GL+ ++ QGDMR+ LN LQ T + + A + P ++ +
Sbjct: 190 NLKLSDCGLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMPQNSEIEHL 249
Query: 229 LLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
L ++ + K+S ++ L+ L GY+ EDI+ +++ +D P + +I + ++
Sbjct: 250 LQTLMQCSFKESVDELNELHHLKGYSVEDIVKGLYKAILKIDWPNVPIIQLIMRLADIEE 309
Query: 288 RISEGVNSLLQLSGLLA 304
R+S G + +Q++ +++
Sbjct: 310 RLSAGATASIQIASIVS 326
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 180/305 (59%), Gaps = 4/305 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+Y+ + L G A DI+ I +D P +++ ++ ++ ++ R+S G N +QL
Sbjct: 262 AYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 319
Query: 300 SGLLA 304
S L+A
Sbjct: 320 SSLIA 324
>gi|341582780|ref|YP_004763272.1| replication factor C small subunit [Thermococcus sp. 4557]
gi|340810438|gb|AEK73595.1| replication factor C small subunit [Thermococcus sp. 4557]
Length = 866
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 176/283 (62%), Gaps = 9/283 (3%)
Query: 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ 88
GN+P ++ + TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 591 GNLPTVLHN-------TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 89 KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCA 148
K + KI+ LDEAD++T AQQALRRTME++SN RF L+CN S KIIEPIQSRCA
Sbjct: 644 K-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCA 702
Query: 149 MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHV 208
+ R+ L D + ++ I E+E + T +GL+AI++ A+GD+R+A+N LQ+ +
Sbjct: 703 IFRFRPLNDEDIAKRIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKI 762
Query: 209 TAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT 267
T E VF V P V+EM+ +EGN +K K+ L K G + ED++ + +
Sbjct: 763 TDENVFLVASRARPEDVREMMTLALEGNFLKARDKLRDILLKQGLSGEDVLIQMHKEVFN 822
Query: 268 LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310
L IPE K+++ +IG + R+ EG N ++QL LLA+ I+G
Sbjct: 823 LPIPEDRKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIMG 865
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRP DIVG V+RLK ++ +G++P+++ +GPPGVGK T
Sbjct: 16 VEKYRPARLDDIVGQAHIVKRLKHYAKTGSMPHLLFAGPPGVGKCLT 62
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 6/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + ++ F G +P++++ GPPG GKT+TIL + + L G S
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV---TLPPGRHKIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI VR++IK FA+ K T K++ILDEAD MT AQ A+R
Sbjct: 76 SSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTALKLIILDEADHMTYPAQNAMR 135
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R++ L +++K ++I + EN+ T
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVELTK 195
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
DGL++++ +GDMR+ LN LQ ++T + + D P P VKE+L + +
Sbjct: 196 DGLDSLIHVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPGEVKEILNHFTKS 255
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
MK+SY+ + L GY+ +DI+ N++ T D P+ +++ G + R S G N
Sbjct: 256 TMKESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAMCLLLKNFGEIEERCSSGAN 315
Query: 295 SLLQLSGLLA 304
+ LS L++
Sbjct: 316 EQITLSALIS 325
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 180/305 (59%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D + F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 31 VEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSDY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K +LELNAS+DRGID VR ++K FA+ + G +K++ILDEAD MT AQ ALRR +
Sbjct: 91 KKQILELNASDDRGIDVVREQVKQFAETRTLFSKG-YKLIILDEADMMTQQAQAALRRVI 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L A++ +V + E EN+ T +G
Sbjct: 150 EQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEAENVQLTPEGK 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + ++ V+ PHP ++ ++ + + S
Sbjct: 210 QALLKLSKGDMRRALNVLQACHAAYDVISESEVYNCTGHPHPQDIEAIVNSMLSDEFTTS 269
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++I L + G A +D+I + +T++I ++ ++ + R+S G N +QL
Sbjct: 270 YQMISKLKTERGLALQDLIAGAYEYLETIEIKPNARVYVLDLLATTEHRLSTGGNEKMQL 329
Query: 300 SGLLA 304
+ LL+
Sbjct: 330 TALLS 334
>gi|57642153|ref|YP_184631.1| replication factor C small subunit [Thermococcus kodakarensis KOD1]
gi|62287362|sp|Q5JHP2.1|RFCS_PYRKO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Pko RFC intein
gi|57160477|dbj|BAD86407.1| replication factor C, small subunit [Thermococcus kodakarensis
KOD1]
Length = 866
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 176/286 (61%), Gaps = 13/286 (4%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+GN+P + V TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 590 AGNMPTV-------VHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR 642
Query: 88 QKVTLPPG--RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQS 145
K P G KI+ LDEAD++T AQQALRRTME++SN RF L+CN S KIIEPIQS
Sbjct: 643 TK---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQS 699
Query: 146 RCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF 205
RCA+ R+ L D + ++ I E E + T +GL+AI++ A+GD+R+A+N LQ+
Sbjct: 700 RCAIFRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALD 759
Query: 206 GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRV 264
+T E VF V P V+EM+ +EGN +K K+ L + G + ED++ + +
Sbjct: 760 TKITDENVFLVASRARPEDVREMMTLALEGNFLKAREKLRDILLRQGLSGEDVLIQMHKE 819
Query: 265 AKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310
L IPE K+++ +IG + R+ EG N ++QL LLA+ I+G
Sbjct: 820 VFNLPIPEDKKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIMG 865
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ DIVG + V+RLK + +G++P+++ +GPPGVGK T
Sbjct: 16 VEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 183/308 (59%), Gaps = 10/308 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DI+ + R+K ++GN+P+++ GPPG GKTT L +AR L G ++
Sbjct: 9 VEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDAW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ VLELNAS++RGI +R K+K FA+ T+P + +++ILDEAD+MT AQQALRR
Sbjct: 69 RENVLELNASDERGIAMIREKVKEFAK---TIPTVKAPFRLIILDEADNMTPDAQQALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+++ RF L N S IIEPIQSRC++ R++ L +L ++ +I +E + T++
Sbjct: 126 IMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASREGVKVTDE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
LEAI +QGDMR+A+N LQ+ + G V E V+K + P V+ ++ V G+
Sbjct: 186 ALEAIWDISQGDMRKAINTLQAAASLGGVVDEEAVYKALGKVSPTRVRAIITEAVIGDFS 245
Query: 239 DSYKIIHHLYK-LGYAPEDIIGNIFR----VAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ K L + G P DII R L +PE LK I +G H R+ G
Sbjct: 246 KAVKEAMSLIRDEGADPLDIIKIAHREVASATSQLKVPEELKPKAIYIVGEHHYRLLRGS 305
Query: 294 NSLLQLSG 301
+ LQ+ G
Sbjct: 306 SGELQVYG 313
>gi|18976465|ref|NP_577822.1| replication factor C small subunit [Pyrococcus furiosus DSM 3638]
gi|397652193|ref|YP_006492774.1| replication factor C small subunit [Pyrococcus furiosus COM1]
gi|42559506|sp|Q8U4J3.1|RFCS_PYRFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=PfuRFC small subunit; Contains: RecName:
Full=Pfu RFC intein
gi|18892004|gb|AAL80217.1| replication factor C, small subunit [Pyrococcus furiosus DSM 3638]
gi|393189784|gb|AFN04482.1| replication factor C small subunit [Pyrococcus furiosus COM1]
Length = 852
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 176/286 (61%), Gaps = 9/286 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+GN+P + V TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 575 AGNMPTV-------VHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR 627
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
K + KI+ LDEAD++T AQQALRRTME++S+ RF L+CN S KIIEPIQSRC
Sbjct: 628 TK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 686
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ L D + ++ I E E + T +GL+AI++ A+GDMR+A+N LQ+
Sbjct: 687 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK 746
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
+T E VF V P ++EM+L ++GN +K K+ L K G + ED++ + +
Sbjct: 747 ITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVF 806
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
L I EP K+ + +IG + R+ EG N ++QL LLA+ ++G K
Sbjct: 807 NLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIGKK 852
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ DIVG E V+RLK + +G++P+++ +GPPGVGK T
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>gi|14590058|ref|NP_142122.1| replication factor C small subunit [Pyrococcus horikoshii OT3]
gi|42559333|sp|O57852.1|RFCS_PYRHO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Pho RFC intein
gi|3256498|dbj|BAA29181.1| 855aa long hypothetical replication factor C subunit [Pyrococcus
horikoshii OT3]
Length = 855
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 176/286 (61%), Gaps = 9/286 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+GN+P + V TT L L+R L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 577 AGNMPTV-------VHNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFAR 629
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
K + KI+ LDEAD++T AQQALRRTME++S+ RF L+CN S KIIEPIQSRC
Sbjct: 630 TK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 688
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ L D + ++ I E E + T +GL+AI++ A+GDMR+A+N LQ+
Sbjct: 689 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK 748
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
+T E VF V P ++EM+L ++GN +K K+ L K G + ED++ + +
Sbjct: 749 ITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLIQMHKEVF 808
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
L I EP K+ + +IG + R+ EG N ++QL LLA+ +VG K
Sbjct: 809 NLPIDEPTKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTLVGKK 854
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ +IVG E V+RLK + +G++P+++ +GPPGVGK T
Sbjct: 18 VEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 180/305 (59%), Gaps = 4/305 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 37 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 96
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 97 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 155
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 156 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 215
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 216 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 275
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+Y+ + L G A DI+ I +D P +++ ++ ++ ++ R+S G N +QL
Sbjct: 276 AYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 333
Query: 300 SGLLA 304
S L+A
Sbjct: 334 SSLIA 338
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 188/319 (58%), Gaps = 8/319 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EK+RP++ +D+ + D V+ + +S +P++++ GPPG GKT+TIL +AR L G ++
Sbjct: 43 VEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNY 102
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ-QKVTL-PPGRHKIVILDEADSMTDGAQQALRR 118
+ +LELNAS+DRGID VR +I+ FA Q + K+V+LDEAD+MT AQ ALRR
Sbjct: 103 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRR 162
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ TRFAL CN+ KII +QSRC R+ L + + ++ + E E + T
Sbjct: 163 VIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEG 222
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GL A+V GDMR+ALN LQSTH H+T E V+ P P ++++ +
Sbjct: 223 GLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFS 282
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
DS+K I + + G A DI+ + +++P +++ +I ++ ++ R++ G N L
Sbjct: 283 DSFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKL 342
Query: 298 QLSGLL-----ARLCIVGS 311
QL L+ AR +VG+
Sbjct: 343 QLGSLISSFTGARSALVGA 361
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 179/305 (58%), Gaps = 4/305 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+Y+ + L G A DI+ I +D P +++ ++ ++ ++ R+S G + +QL
Sbjct: 261 AYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQL 318
Query: 300 SGLLA 304
S L+A
Sbjct: 319 SSLIA 323
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 26 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 85
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 86 FNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 144
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 145 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDISEDG 204
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 205 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 264
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R++ G + +Q
Sbjct: 265 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPPAVRIHLLIKMADIEHRLAVGTSEKIQ 324
Query: 299 LSGLLA 304
LS L+A
Sbjct: 325 LSSLIA 330
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 179/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+ ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 32 VEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSEY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + TL +K++ILDEAD MT AQ ALRR +
Sbjct: 92 RKQILELNASDDRGIDVVREQIKQFAETR-TLFAKSYKLIILDEADMMTQQAQAALRRVI 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L A++ ++ + E E+ T DG
Sbjct: 151 EQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVVEAEDCKVTKDGK 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++ ++GDMR+ALN LQ+ H + + V+ PHP ++ ++ + + S
Sbjct: 211 EALLKLSKGDMRRALNVLQACHAAYDSIGETEVYNCTGNPHPRDIESIVNSMLSDEFTTS 270
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++I+ + + G A +D++ F TL++ ++ ++ + + R+S G + +QL
Sbjct: 271 YQMINQMKTERGLALQDLLSGAFEYVDTLELKPQARVYLLDYLATIEYRLSTGASEKIQL 330
Query: 300 SGLLA 304
S LL
Sbjct: 331 SALLG 335
>gi|261402851|ref|YP_003247075.1| replication factor C [Methanocaldococcus vulcanius M7]
gi|261369844|gb|ACX72593.1| Replication factor C [Methanocaldococcus vulcanius M7]
Length = 544
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 174/287 (60%), Gaps = 13/287 (4%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
GN+P I+ + TT LCLAR L G +++D LELNAS++RGID +R K+K FA+
Sbjct: 268 GGNLPTILHN-------TTAALCLARDLFGENWRDNFLELNASDERGIDVIRTKVKDFAR 320
Query: 88 QKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQS 145
K P G KI+ LDE+D++T AQ ALRRTME YS+ RF L+CN KII PIQS
Sbjct: 321 TK---PIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVARFILSCNYPSKIIPPIQS 377
Query: 146 RCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF 205
RCA+ R++ L + K+ EI EKE ++ T GL+AI++ ++GDMR+A+N LQ+
Sbjct: 378 RCAIFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLDAIIYVSEGDMRKAINVLQTAAALS 437
Query: 206 GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRV 264
+ E V+KV P VK+M+ + G ++ +++ L + G + EDI+ +FR
Sbjct: 438 DVIDDEIVYKVSSRARPEEVKKMMELALNGKFIEARDLLYKLMVEWGMSGEDILNQMFRE 497
Query: 265 AKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
LDI E K+ + IG RI EG N +QLS LLA++ ++G
Sbjct: 498 INNLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALMGK 544
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRP+T DIVG ++ V+RLK + ++P+++ SGPPGVGK T
Sbjct: 6 VEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 52
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALR
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRGV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 180/310 (58%), Gaps = 6/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + ++ F G +P++++ GPPG GKT+TIL + + L G S
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV---TLPPGRHKIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI VR++IK FA+ K T K++ILDEAD MT AQ A+R
Sbjct: 76 SSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTSLKLIILDEADHMTYPAQNAMR 135
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R++ L +++K ++I + EN+ T
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKSENVDLTK 195
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
DGLE+++ +GDMR+ LN LQ ++T + + D P P VK++L + +
Sbjct: 196 DGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHFTKS 255
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+K+SY+ + L GY+ +DI+ N++ T D P+ +++ G + R S G N
Sbjct: 256 TIKESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAVCLLLKSFGEIEERCSSGAN 315
Query: 295 SLLQLSGLLA 304
+ LS L++
Sbjct: 316 EQITLSALIS 325
>gi|389851690|ref|YP_006353924.1| replication factor C small subunit [Pyrococcus sp. ST04]
gi|388248996|gb|AFK21849.1| replication factor C small subunit [Pyrococcus sp. ST04]
Length = 867
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 175/285 (61%), Gaps = 9/285 (3%)
Query: 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ 88
GN+P ++ + TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 591 GNLPTVLHN-------TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 89 KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCA 148
K + KI+ LDEAD++T AQQALRRTME++S RF L+CN S KIIEPIQSRCA
Sbjct: 644 K-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSINVRFILSCNYSSKIIEPIQSRCA 702
Query: 149 MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHV 208
+ R+ L D + ++ I E E + T +GL+AI++ A+GDMR+A+N LQ+ +
Sbjct: 703 IFRFRPLRDEDIAKRLKFIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKI 762
Query: 209 TAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT 267
T E VF V P V++M+L +EGN +K K+ L K G + ED++ + +
Sbjct: 763 TDENVFMVASRARPEDVRQMMLLALEGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN 822
Query: 268 LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
L I EP K+ + +IG + R+ EG N ++QL LLA+ ++G K
Sbjct: 823 LPISEPKKVQLADKIGEYNFRLVEGANEMIQLEALLAQFTLIGKK 867
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ DIVG E V+RLK + +G++P+++ +GPPGVGK T
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 178/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 34 VEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGKDY 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G +K++ILDEAD MT AQ ALRR +
Sbjct: 94 RKQILELNASDDRGIDVVREQIKNFAETRTLFLKG-YKLIILDEADMMTTAAQAALRRVI 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KII IQSRC R++ L ++ ++ + E E + T DG
Sbjct: 153 EQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLSGVIEAEGVKLTEDGK 212
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + + + ++ PHP ++ ++ + + + S
Sbjct: 213 KALLKLSKGDMRRALNVLQACHAAYDLIGEDEIYNCTGNPHPTDIESVVNSMLSDDFTTS 272
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
YK+I L + G A D+I + +T+D ++ ++ + R+S G N +QL
Sbjct: 273 YKMISALKVERGLALPDLINGAYEYIETIDFKPHARIYLLDFLATTEHRLSSGANEKIQL 332
Query: 300 SGLLA 304
+ LL
Sbjct: 333 TALLG 337
>gi|363540406|ref|YP_004894549.1| mg498 gene product [Megavirus chiliensis]
gi|350611571|gb|AEQ33015.1| putative replication factor C small subunit [Megavirus chiliensis]
gi|371943815|gb|AEX61643.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701391|gb|AFX92553.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 325
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 187/306 (61%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP T +I+ + + +++ +F + ++I +GPPG+GKT+T C+A+ +LG
Sbjct: 12 IEKYRPSTIDEIIFDVNIRKQINIFLEDKDNVHLIFTGPPGIGKTSTARCIAKTMLGNHM 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LE+NA+ DRG+ ++ N+I F ++ V KI++LDEAD MT Q + +
Sbjct: 72 NTGYLEINAAEDRGVRSMSNRIPPFCKKVVDF--NMSKIILLDEADIMTSKCQFDINNMI 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + T+F CN+S KIIE +QS C +LR+ KLT+ Q+ S + +IC+KEN+ GL
Sbjct: 130 KEFGKRTKFIFTCNDSTKIIEDLQSVCRILRFKKLTNQQICSYLSKICDKENVEFDKPGL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E I + + GDMR+++N+LQ T + +T + V K+C P P +K+++ C++G++ ++
Sbjct: 190 ETICYISYGDMRKSINDLQKTAFTYQKITKKTVLKICRVPDPEEIKKIIELCLQGDLINA 249
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ + KL Y DI+ + V + D+ +KL +I + + +S+G++S LQLS
Sbjct: 250 DAEMNSIIKLDYCYFDIVSSFVFVLTSYDLEHSIKLKLIDIVNKTKINVSKGLHSKLQLS 309
Query: 301 GLLARL 306
G+L R+
Sbjct: 310 GMLCRI 315
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRPQT +++ ++D + ++ F S +P++++ GPPG GKT+TIL AR L
Sbjct: 25 VEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYKDKE 84
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 85 FNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 143
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + +E + + DG
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIAEEKVDVSEDG 203
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E + P + +L + +
Sbjct: 204 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETAYTCTGHPLKADIANILDWMLNQDFTS 263
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P P+++ ++ ++ ++ R++ G + +Q
Sbjct: 264 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPPPVRIHLLIKMADIEHRLAVGTSEKIQ 323
Query: 299 LSGLLA 304
LS L+A
Sbjct: 324 LSSLIA 329
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 180/305 (59%), Gaps = 4/305 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+Y+ + L G A DI+ I +D P +++ ++ ++ ++ R+S G + +QL
Sbjct: 262 AYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQL 319
Query: 300 SGLLA 304
S L+A
Sbjct: 320 SSLIA 324
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 195/329 (59%), Gaps = 16/329 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP +D++ + + + ++ G +P++++ GPPG GKT+T+L +A+ L G
Sbjct: 15 IEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLFGNRL 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ---------QKVTLPPGRHKIVILDEADSMTDG 111
VLELNAS+DRGID +RN+IK FA QK T P K++ILDEAD MT
Sbjct: 75 TQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPD--IKLIILDEADQMTKD 132
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRT+E YS RF L CN KII +QSRC R++ L +++S++ EIC++E
Sbjct: 133 AQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEICKEE 192
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
N+ + GL+AI + GDMR+ +N LQST FG +T + V P ++ ++ +
Sbjct: 193 NVIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFGQITEDNVHMCTGNPLKEDIRLIINS 252
Query: 232 CVEGNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
++ D+YK + ++ + G A +DI+ +I L+IP +++ +++++ ++ R+S
Sbjct: 253 LFNDSLADAYKKVMNIKTERGLALQDILRDIHPYVMKLNIPIAVRIYLLEKMSDIEYRLS 312
Query: 291 EGVNSLLQLSGLLARLCI----VGSKNKK 315
G + LQ L++ I V SKN++
Sbjct: 313 LGTSESLQTMALISAFQIAKEPVSSKNEE 341
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 185/307 (60%), Gaps = 4/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+V + + ++ + F +P+++ GPPG GKT+TIL +A+ + G ++
Sbjct: 17 VEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKKIYGGNW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K VLELNAS+DRGID VR++IK FAQ + G K++ILDEAD MT AQ ALRR +
Sbjct: 77 KRNVLELNASDDRGIDVVRDQIKSFAQTRTLFSDG-FKLIILDEADLMTQQAQGALRRII 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TTRF + CN KI I SRC R++ L A L +++E+ E E + +D
Sbjct: 136 EHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENEAVQIDDDAK 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGF--GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
+A++ +GDMR+ALN LQ+ H ++ + V+ V P P A++ ++ ++ +
Sbjct: 196 KALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAPQPEAIEYIVNTLLKDEIS 255
Query: 239 DSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
Y IH + + G A +DI+ ++ +T++ P K++I++ + V R+S+G + +
Sbjct: 256 TCYSKIHQVKRQNGLALQDILTGVYDYIQTIEFPTATKVAILELLAEVEHRLSKGSSETI 315
Query: 298 QLSGLLA 304
QLS L+A
Sbjct: 316 QLSALIA 322
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 181/305 (59%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 42 VEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSEY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 102 RKQILELNASDDRGIDVVREQIKNFAETRTLFSKG-FKLIILDEADMMTTAAQAALRRVI 160
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI+ IQSRC R++ L +++ ++ ++ E E + T+DG
Sbjct: 161 EQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPISEVEKRLQKVIESEGVKLTDDGK 220
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + + ++ PHP ++ ++ + + + S
Sbjct: 221 KALLKLSKGDMRRALNVLQACHAAYDLIGEAEIYNCTGNPHPSDIETVVNSMLSDDFTTS 280
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+K+I L + G A D+I ++ +T+D ++ ++ + + R+S G N +QL
Sbjct: 281 HKMISALKVERGLALPDLINGVYEYIETVDFKPNARIYLLDILATIEHRLSTGANEKIQL 340
Query: 300 SGLLA 304
+ LL
Sbjct: 341 TALLG 345
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 178/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 42 VEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYGNEY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G K+++LDEAD MT AQ ALRR +
Sbjct: 102 RKQILELNASDDRGIDVVREQIKNFAEMRTLYSKG-FKLIVLDEADMMTQAAQSALRRVI 160
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KII IQSRC R++ L ++ ++ ++ E E+++ T DG
Sbjct: 161 EQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEAEHVNLTEDGK 220
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + ++ PHP ++ ++ + + S
Sbjct: 221 QALLKLSKGDMRRALNILQACHAAYDRTDETAIYNCTGNPHPSDIEAIVTSMMNDEFSTS 280
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y+ + + G A +D+I + ++L++P ++ ++ + R+S G + +QL
Sbjct: 281 YQKVSRMKTDKGLALQDLIAGTYEYLESLELPPQTRVYLLDHLATTEHRLSTGGSEKVQL 340
Query: 300 SGLLA 304
+ LL
Sbjct: 341 TALLG 345
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 188/316 (59%), Gaps = 7/316 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ D+VG ++ V RLK + + ++P+++ +G G+GKTT+ + LA+ G +
Sbjct: 9 IEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKEFYGEHW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
E+NAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T+ AQ ALRR
Sbjct: 69 NVNFREMNASDERGIDVVRNQIKQFAR---TAPIGGAEFKILFLDEADALTNDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ L + +++ I E E ++ + D
Sbjct: 126 TMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELMHIAENEGLTLSED 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
+ AI++ + GDMR+A+N LQ + E +F++ P + E+L +E +
Sbjct: 186 AISAIIYVSAGDMRKAINALQGAAIIDPEIKEEMIFEITSTAKPDEILELLEIIIEADFD 245
Query: 239 DS-YKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ +K+ K G AP ++I ++R + I LKL +I +G RISEG +
Sbjct: 246 GAGHKLDELTVKRGIAPNELINQLYRTIVSHKTIGRELKLEMISHLGETDFRISEGSDPG 305
Query: 297 LQLSGLLARLCIVGSK 312
+Q+ L+AR I K
Sbjct: 306 IQMEALIARSVISARK 321
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 180/310 (58%), Gaps = 6/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + ++ F G +P++++ GPPG GKT+TIL + + L G S
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV---TLPPGRHKIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI VR++IK FA+ K T K++ILDEAD MT AQ A+R
Sbjct: 76 SSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTTLKLIILDEADHMTYPAQNAMR 135
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R++ L +++K ++I + EN+ T
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVDLTQ 195
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
DGLE+++ +GDMR+ LN LQ ++T + + D P P VK++L + +
Sbjct: 196 DGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHLTKS 255
Query: 236 NMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+K+SY+ + L GY+ +DI+ N++ T D P+ +++ G + R S G N
Sbjct: 256 TIKESYEFVTKLQCSKGYSIKDIMVNLYESILTYDFPDSAVCLLLKNFGEIEERCSTGAN 315
Query: 295 SLLQLSGLLA 304
+ LS L++
Sbjct: 316 EQITLSALIS 325
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 176/307 (57%), Gaps = 2/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V ++D + L+ F S+ VP+++ GPPG GKT+TIL A + GP+F
Sbjct: 23 VEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYGPNF 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ V+ELNAS+DRGID VR +IK FA K K++ILDE D+MT AQ ALRR +
Sbjct: 83 RNQVMELNASDDRGIDVVREQIKSFASTKQIFSSA-FKLIILDETDAMTLAAQNALRRVI 141
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R+ L ++ KV E+ EKEN + + +G
Sbjct: 142 EKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEKKVDEVAEKENCTISPEGK 201
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ ++GDMR+ALN LQ+ H + V V+ PHP + L + + + +
Sbjct: 202 TALLRLSKGDMRKALNILQACHAVYDVVDEAAVYNCVGHPHPADIDYFLKSIMNEEVVTA 261
Query: 241 YKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I L + G A +DII I L IP ++ I+ + + R+S G + +QL
Sbjct: 262 SNAITKLKQDKGLALQDIIACISEAIDELQIPANARIFILDNLAKIEYRMSFGCSEKIQL 321
Query: 300 SGLLARL 306
S L+A +
Sbjct: 322 SALIATI 328
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 2/311 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G F
Sbjct: 26 VEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIYGAQF 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL-PPGRHKIVILDEADSMTDGAQQALRRT 119
+++VLELNAS++RGID VR +IK FA K K+++LDEAD+MT AQ ALRR
Sbjct: 86 RNSVLELNASDERGIDVVREQIKSFASTKSVFGAKAGFKLIVLDEADAMTQAAQGALRRV 145
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII IQSRC R+N L Q+ S++ + E E+ + T G
Sbjct: 146 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVESRLQHVIESEHCNITPGG 205
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
EA++ ++GDMR+ALN LQ+ H H+ V+ PHP ++ +L + ++
Sbjct: 206 KEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPEDIEAVLKSMMQDEFTT 265
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
++ I L G A D+I ++ + ++ +P ++ ++ + + R+S G + LQ
Sbjct: 266 AFNTIVALKTAKGIALADMISGVYDLLASIKLPPKSRIYLLDHLADTEHRLSTGGSEKLQ 325
Query: 299 LSGLLARLCIV 309
L+ LL + I
Sbjct: 326 LTALLGAVKIA 336
>gi|9453897|dbj|BAB03292.1| replication factor C small subunit precursor [Pyrococcus furiosus
DSM 3638]
Length = 268
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 170/271 (62%), Gaps = 6/271 (2%)
Query: 45 TTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVIL 102
TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+ K P G KI+ L
Sbjct: 1 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFL 57
Query: 103 DEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLS 162
DEAD++T AQQALRRTME++S+ RF L+CN S KIIEPIQSRCA+ R+ L D +
Sbjct: 58 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 117
Query: 163 KVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHP 222
++ I E E + T +GL+AI++ A+GDMR+A+N LQ+ +T E VF V P
Sbjct: 118 RLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARP 177
Query: 223 LAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQE 281
++EM+L ++GN +K K+ L K G + ED++ + + L I EP K+ + +
Sbjct: 178 EDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADK 237
Query: 282 IGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
IG + R+ EG N ++QL LLA+ ++G K
Sbjct: 238 IGEYNFRLVEGANEIIQLEALLAQFTLIGKK 268
>gi|440492171|gb|ELQ74763.1| Replication factor C, subunit RFC2, partial [Trachipleistophora
hominis]
Length = 309
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 188/308 (61%), Gaps = 12/308 (3%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ D+VGN +T+E ++ ++ ++P+++ SGPPG GK T +A ++ K
Sbjct: 14 EKYRPRKIGDVVGNHETIESIQSILNANSMPHLLFSGPPGTGKITVAKIIAEKIVND--K 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+LELNAS++RGIDTVR IK F+ + L G K++ILDE DSMT AQQA+RRTME
Sbjct: 72 KYILELNASDERGIDTVRTTIKNFSMR---LSTGL-KVIILDECDSMTVAAQQAMRRTME 127
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+ RF L CNN +KI EPIQSRCA+ +NK+ + + +++ EI EN++ +++ L
Sbjct: 128 TSTADCRFILVCNNIQKISEPIQSRCAIFTFNKIKNEDMKTRLNEIISDENLNMSDEALN 187
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
I+F + DMRQA+N LQST V + K+ +P P ++ +++ ++ ++++
Sbjct: 188 TILFLSDSDMRQAINILQSTLYS-KEVNENVILKITGQPSPKLIESIIILLLKNKVEEAL 246
Query: 242 KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSG 301
++ GY P+D++ + FRVAK +D E LK I LR+ EGV S LQ
Sbjct: 247 SKFDCIWSDGYDPQDLLVSFFRVAKNMDNYEILKC-----ISKYQLRLFEGVGSKLQFYS 301
Query: 302 LLARLCIV 309
LL + ++
Sbjct: 302 LLRDISLI 309
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 10/316 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+E++RP D+V E L F G++P+++ GPPGVGKTT L LAR L G S+
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDSW 60
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+ +VLELNAS++RGID +R K+K FA+ T+P G K+VILDEAD+MT AQQALRR
Sbjct: 61 RSSVLELNASDERGIDVIREKVKEFAR---TIPTGPVPFKLVILDEADNMTSDAQQALRR 117
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y++TTRF L N IIEPIQSRCA+ R+N L ++ ++ +I ++ + T D
Sbjct: 118 IMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTED 177
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEAI +QGDMR+A+N LQ+T V V+++ +P V++++ + G+
Sbjct: 178 GLEAIWEVSQGDMRKAINTLQTTTTTNKKVDENAVYQLFGGINPQEVRDLIYEALNGDFG 237
Query: 239 DSYKIIHHLYK-LGYAPEDIIGNIFR----VAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ + + + G P II + R ++ PE LK II I H I G
Sbjct: 238 KAIMGLKSMIRDRGVDPIYIIRLLHREVTSTVSKINAPEYLKPRIIYSIAMRHHAILRGS 297
Query: 294 NSLLQLSGLLARLCIV 309
+ L Q+ GLLA + ++
Sbjct: 298 DDLTQVIGLLAEIRLM 313
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D++ +++ + ++ F +P+++ GPPG GKT+TIL A+ + P+
Sbjct: 8 VEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSPAE 67
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
K VLELNAS+DRGID VR I+ FA + G K++ILDEAD+MT AQ ALRR
Sbjct: 68 IKSMVLELNASDDRGIDVVRGPIQSFASTRSIFRSG-FKLIILDEADAMTKDAQNALRRV 126
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF L CN KII +QSRC R+ L+ Q+ ++ I +ENI+ T+ G
Sbjct: 127 IETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIREENINITDSG 186
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++++V AQGDMR++LN LQST + V V+ +P P +K+++ + +
Sbjct: 187 MDSVVKLAQGDMRRSLNILQSTSMAYDTVDQRTVYLCTGQPLPEDIKQIVEWMLGEDFMT 246
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y KII + G A DII I + +D P ++L+++ ++ N+ +S G + +Q
Sbjct: 247 AYQKIIELKIEKGLALHDIITEIHHLVHRIDFPAKVRLALLDKMSNIEYNVSTGTSERIQ 306
Query: 299 LSGLLA 304
L L+
Sbjct: 307 LGALIG 312
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GK +TIL C ++
Sbjct: 17 VEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILACAKQLYKDKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTRDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPRLEHVIQQESIDVTPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQST +G VT + V+ P + +L + +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSDIANILEWALNKDFST 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK L L G A DI+ I V +D P +++ ++ ++ + R++ G + +Q
Sbjct: 256 AYKQTLQLKTLKGLALHDILTEIHLVIHRVDFPPAIRMGLLIKLAEIEYRLASGTSEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRPQ D++ ++D + ++ F S +P+++ GPPG GKT+TIL AR L
Sbjct: 17 VEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLYRDKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVPRLEHVIQQESIDVTPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQST +G VT + V+ P + +L + +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANILDWALNKDFTT 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ + + +D P +++ ++ ++ +V R++ G + +Q
Sbjct: 256 AYRQILELKTLKGLALHDILTEVHLLIHRVDFPPNIRIGLLIKLADVEHRLASGTDEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 180/307 (58%), Gaps = 4/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYK-IIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R++ G + +
Sbjct: 261 AYRNNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLAVGTSEKI 320
Query: 298 QLSGLLA 304
QLS L+A
Sbjct: 321 QLSSLIA 327
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG-PS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GKT+T+L A+ L
Sbjct: 17 VEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLASAKQLYKEKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTRDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRLEFVIQQESIDVTPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQST +G VT + V+ P + +L + +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSDIANILDWSLNKDFTS 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L L G A DI+ + + +D P +++ ++ ++ ++ R++ G + +Q
Sbjct: 256 AYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLADIEYRLASGTSEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 183/308 (59%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 35 VEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS+DRGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 95 HNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKPSVKLVLLDEADAMTKDAQFALR 153
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + ++ + E + +
Sbjct: 154 RVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQD 213
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ +
Sbjct: 214 SGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQY 273
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+S+K I+ + + G A DI+ + +++P +++ ++ ++ ++ R+S G N
Sbjct: 274 SESFKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFGCNDK 333
Query: 297 LQLSGLLA 304
LQL ++A
Sbjct: 334 LQLGSVVA 341
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 177/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + GP +
Sbjct: 40 VEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAVARRIYGPEY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 100 RKQILELNASDDRGIDVVREQIKQFAETRTLFARG-FKLIILDEADMMTQQAQAALRRVI 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L ++ ++ + E E++ T DG
Sbjct: 159 EQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKRIGTVIEAEHVKLTEDGK 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + V ++ PHP ++ ++ + + S
Sbjct: 219 KALLKLSKGDMRRALNVLQACHAAYDSVGETEIYNCTGNPHPSDIENIVNSMLSDEFTTS 278
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++I + + G A +D+I + +T++ ++ ++ + R+S G + +QL
Sbjct: 279 YQMISTMKTERGLALQDLISGAYEYIETIEFKPQARIYLLDYLATTEHRLSAGASEKIQL 338
Query: 300 SGLLA 304
S +L
Sbjct: 339 SAMLG 343
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 178/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + DIV ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 42 VEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGNDY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G +K++ILDEAD MT AQ ALRR +
Sbjct: 102 RKQILELNASDDRGIDVVREQIKNFAETRTLFLKG-YKLIILDEADMMTTAAQAALRRVI 160
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KII IQSRC R++ L ++ ++ + E E + T DG
Sbjct: 161 EQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVERRLNSVIEAEGVKLTEDGK 220
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H F + ++ PHP ++ ++ + + + S
Sbjct: 221 KALLKLSKGDMRRALNVLQACHAAFDLIGEAQIYDCTGSPHPSDIETVVNSMLSDDFTTS 280
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
YK+I L + G A D+I + +T+D +++ ++ + R+S G + +QL
Sbjct: 281 YKMISALKVERGLALPDLINGAYEYIETIDFKPHVRVYVLDFLATTEHRLSTGASEKIQL 340
Query: 300 SGLLA 304
+ LL
Sbjct: 341 TALLG 345
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 186/320 (58%), Gaps = 16/320 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++FSDI+ ++D + L F+ G +P+++ GPPG GKT+TI+ ++R L G
Sbjct: 10 VEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGSHR 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG----------RHKIVILDEADSMTD 110
V+ELNAS++RGI+TVR +IK FA+ T G K++ILDEAD MT+
Sbjct: 70 HSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQMTN 129
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ +LRR MEIYS+ RF L CN +II PIQSRC R+ L + + + +I +
Sbjct: 130 AAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAKA 189
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAV 225
E ++ + L+ + QGDMR+ LN LQ T G +T++ V P+P +
Sbjct: 190 EGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNPTEI 249
Query: 226 KEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
++L ++ + KD + L ++ GY+ ED++ ++R +D P + + ++ +G+
Sbjct: 250 SKLLQRLMQESFKDCVDYVVTLNQVQGYSVEDLVTALYRSILRIDWPNVVIVQLLIRLGD 309
Query: 285 VHLRISEGVNSLLQLSGLLA 304
+ R+S G + +Q++ L++
Sbjct: 310 IEQRLSAGASPYIQIASLVS 329
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 183/308 (59%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 42 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS++RGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 102 SNMILELNASDERGIDVVRQQIQDFAGAR-SLSFGARPSVKLVLLDEADAMTKDAQFALR 160
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + + ++ I + E +S +
Sbjct: 161 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDD 220
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ +
Sbjct: 221 GGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPF 280
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
S+K I + + G A DII + + +P +++ +I ++ ++ R+S N
Sbjct: 281 STSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFACNDK 340
Query: 297 LQLSGLLA 304
LQL L++
Sbjct: 341 LQLGALIS 348
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 180/310 (58%), Gaps = 7/310 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQ +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 24 VEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 83
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 84 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 142
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 202
Query: 180 LEAIVFTAQ----GDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
++A+V ++ GDMR+ALN LQST FG VT E V+ P + +L +
Sbjct: 203 MKALVTLSKTLSSGDMRRALNILQSTSMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 262
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+ +Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G +
Sbjct: 263 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTS 322
Query: 295 SLLQLSGLLA 304
+QLS L+A
Sbjct: 323 EKIQLSSLIA 332
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 151/218 (69%), Gaps = 5/218 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG ++ ++RLK + N+P+++ SGPPG GKT T + LAR L G ++
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D +E+NAS++RGID VR+KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 68 RDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALRR 124
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME+YS + RF L+CN +IIEPIQSRCA+ R+ + + +++EICEKE + T D
Sbjct: 125 TMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKV 216
GLEA+++ + GD R+A+N LQ V A+ ++++
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222
>gi|351737548|gb|AEQ60583.1| replication factor C small subunit [Acanthamoeba castellanii
mamavirus]
gi|398257227|gb|EJN40835.1| hypothetical protein lvs_R331 [Acanthamoeba polyphaga
lentillevirus]
Length = 319
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 183/306 (59%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP D++ +++ +++ +F ++II+G PGVGKT+T+ C+A+ LLG
Sbjct: 8 IEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLGEDM 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LE+NA+ DRG+ ++ I F ++ + KI++LDEAD MT Q + +
Sbjct: 68 SQGYLEINAAEDRGVRSISTIIPPFCKK--VFAANKSKIILLDEADIMTSKCQYDINNMI 125
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + T+F CN+S KIIE IQS C +LR+ KLTD Q+ + +IC E I + GL
Sbjct: 126 KKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGL 185
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
I + + GDMR+++N+LQ T FG +T V K+C P P +++++ C+E N++ +
Sbjct: 186 RTICYISNGDMRKSINDLQKTAFTFGKITKNLVLKICKVPDPEDIRKIISLCLESNLEKA 245
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I++++ KL Y DI+ + V K D+ E L+L +I + + IS+G+ S LQL+
Sbjct: 246 DEIMNNIIKLDYCYFDIVTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRSKLQLT 305
Query: 301 GLLARL 306
G++ RL
Sbjct: 306 GMICRL 311
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 185/314 (58%), Gaps = 8/314 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V E VE LK S NVP+++ +GPPG GKT T A+ L GP +
Sbjct: 12 VEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDLFGPRY 71
Query: 61 KDA--VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQAL 116
+ +E+NAS++RGI+T+R ++K +A+ ++P G ++++LDE+D +TD AQ A
Sbjct: 72 IEDGHFIEINASDERGIETIRERVKTYAR---SVPFGGIGFRLLLLDESDQLTDAAQHAF 128
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RRTME +S T RF LA N S +IIEPIQSRCA+LR+ L+ + + + +I ENI
Sbjct: 129 RRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVETMLKKIAASENIKLD 188
Query: 177 NDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
+ ++AI + GDMR+A+N LQS + + ++ ++ V + ML ++G
Sbjct: 189 DSAIDAIYEFSLGDMRKAINILQSAASISKTIDSKTIYDVMGVVSRGEITRMLQLVLDGK 248
Query: 237 MKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ ++ LY GY P DI+ +I R L + E KL ++ IG RISEG
Sbjct: 249 FIEARNLLRELLYVQGYQPTDIVSSIAREIPLLPVSEQDKLRLMDLIGETDYRISEGGTP 308
Query: 296 LLQLSGLLARLCIV 309
+QL LA+L +V
Sbjct: 309 EVQLQAFLAKLALV 322
>gi|23271821|gb|AAH23674.1| Rfc5 protein, partial [Mus musculus]
Length = 333
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 3/301 (0%)
Query: 6 PQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPSFKDAV 64
PQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++ F V
Sbjct: 21 PQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMV 80
Query: 65 LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS 124
LELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR +E ++
Sbjct: 81 LELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFT 139
Query: 125 NTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV 184
TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG++A+V
Sbjct: 140 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALV 199
Query: 185 FTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKII 244
+ GDMR+ALN LQST+ FG VT E V+ P + +L + + +YK I
Sbjct: 200 TLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYKNI 259
Query: 245 HHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
L L G A DI+ + +D P +++ ++ ++ ++ R+S G + +QLS L+
Sbjct: 260 MELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLI 319
Query: 304 A 304
A
Sbjct: 320 A 320
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 183/312 (58%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ D++G ++ + LK F +G++P++I +GP G GKT+T + L L G +K
Sbjct: 7 EKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDDWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ LELNAS++RGID +RN IK FA+ + + G KI+ LDEAD +T+ AQ ALRRTME
Sbjct: 67 ENFLELNASDERGIDIIRNNIKDFAKIRPSNKLG-FKIIFLDEADQLTNEAQAALRRTME 125
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
++ +TTRF +CN S KII PIQSRC +LR+ L + K+ EI + E +D L+
Sbjct: 126 MFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDSLD 185
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
AI + GDMR+A+N +Q+ + G + ++++ E + K ++ + G D+
Sbjct: 186 AIYEISDGDMRKAINVMQAIQST-GEIKPSKIYEISGEINKNEYKNLISLSLNGAFSDAK 244
Query: 242 KIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ L G + DII + + I KL I+ + RIS+G + +Q+
Sbjct: 245 SLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQMD 304
Query: 301 GLLARLCIVGSK 312
LLAR+ +GS+
Sbjct: 305 ALLARISYIGSE 316
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 182/308 (59%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 42 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS++RGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 102 SNMILELNASDERGIDVVRQQIQDFAGAR-SLSFGARPSVKLVLLDEADAMTKDAQFALR 160
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + + ++ I + E +S +
Sbjct: 161 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDD 220
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ +
Sbjct: 221 GGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPF 280
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
S+K I + + G A DII + + +P +++ +I + ++ R+S N
Sbjct: 281 STSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINNLADIEYRLSFACNDK 340
Query: 297 LQLSGLLA 304
LQL L++
Sbjct: 341 LQLGALIS 348
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 181/305 (59%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TI+ +AR L G ++
Sbjct: 31 VEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARRLYGANY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K +LELNAS+DRGID VR++IK FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 91 KKQILELNASDDRGIDVVRDQIKGFAETRGVFAKG-FKLIILDEADMMTQAAQAALRRVI 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L +++ ++ + E E + + +G
Sbjct: 150 EQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVIENEGVKVSPEGK 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++ ++GDMR+ALN LQ+ H + E ++ PHP ++ ++ + +
Sbjct: 210 EALLKLSRGDMRRALNVLQACHAAYDITDEEAIYTCTGNPHPKDIENVVNSMMSQEFGTC 269
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I+ L + G A +D+I F + L++P ++ ++ ++ + R+S G + LQL
Sbjct: 270 YHMINSLKTERGLALQDLISGAFDYVQELELPPHSRVYLLDQLATIEHRLSTGGSEKLQL 329
Query: 300 SGLLA 304
+ L+A
Sbjct: 330 TALIA 334
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 178/310 (57%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + +V +++ ++ ++ F +P+++ GPPG GKT+TI A+ L G ++
Sbjct: 13 VEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYGKAY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K VLELNAS+DRGI VR +IK FA K G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 73 KSMVLELNASDDRGIGVVREQIKTFASTKTVFSAG-FKLIILDEADAMTNDAQAALRRVI 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF L CN KI +QSRC R+ L ++ +V + + E+I T G+
Sbjct: 132 EKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVIDAEHIETTPAGI 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA+V A GDMR+ALN LQST F V E V+ P P ++ ++ + + K +
Sbjct: 192 EALVKLASGDMRKALNILQSTFMAFNKVNDEGVYLCTGTPLPADIEAIVEVMLNESFKTA 251
Query: 241 Y-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ KI+ + G A +DI+ ++ LDIP +L ++ + + R++ G N QL
Sbjct: 252 FRKIMEIKTEQGLALQDILHDVHEFIHRLDIPTASRLLLLDRLAQIEERLAYGANERAQL 311
Query: 300 SGLLARLCIV 309
+ L+ +V
Sbjct: 312 ADLVGVFQVV 321
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 180/314 (57%), Gaps = 15/314 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPEL 95
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDG 111
++ VLELNAS++RGI +R K+K FAQ V + PP KI+ILDEADSMT
Sbjct: 96 YRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPP--FKIIILDEADSMTGA 153
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ LT+ +++EIC KE
Sbjct: 154 AQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKE 213
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG---HVTAEYVFKVCDEPHPLAVKEM 228
N+ ++ +G++A+V ++GD+R+A+ LQST FG +T V ++ P ++ +
Sbjct: 214 NLKYSKEGIDALVKVSEGDLRKAITLLQSTAR-FGAEKEITESLVIEIAGVVPPKVIENL 272
Query: 229 LLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLR 288
L C +GN + + +L GYA I+ V + + K I +++ V
Sbjct: 273 LQTCYKGNFEKLEVAVKNLVDEGYAATQILSQFHDVIIEEKLGDKQKSVITEKMAVVDKC 332
Query: 289 ISEGVNSLLQLSGL 302
+ +G + LQL L
Sbjct: 333 LVDGADEYLQLLNL 346
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 178/307 (57%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D V+ + +S +P++++ GPPG GKT+TIL +AR L G F
Sbjct: 40 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQF 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ-QKVTL-PPGRHKIVILDEADSMTDGAQQALRR 118
+ +LELNAS+DRGID VR +I+ FA Q + K+V+LDEAD+MT AQ ALRR
Sbjct: 100 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRR 159
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ TRFAL CN+ KII +QSRC R+ L + ++ + E + +
Sbjct: 160 VIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSES 219
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ + +
Sbjct: 220 GLAALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 279
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S+ I + + G A D++ + + +P +++ +I ++ ++ R+S G N L
Sbjct: 280 ASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKL 339
Query: 298 QLSGLLA 304
QL L+A
Sbjct: 340 QLGSLIA 346
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 185/322 (57%), Gaps = 9/322 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDL 95
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI VR K+K FAQ V T P G+ KI+ILDEADSMT AQ
Sbjct: 96 YRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQ 155
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L + +++EIC KEN+
Sbjct: 156 AALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENL 215
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+T +G++A+V ++GD+R+A+ LQS N +T + + ++ P ++ +L
Sbjct: 216 KYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKVIQSLLHI 275
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
C +G + + + GYA +++ + V + + K I +++ V +++
Sbjct: 276 CYKGTFEKLEVAVKDMIDQGYAATNLLNQLHDVIIEEQLSDKQKSVITEKMAEVDKCLAD 335
Query: 292 GVNSLLQLSGLLARLCIVGSKN 313
G + LQL L + + ++N
Sbjct: 336 GADEYLQLLSLCSVIMQQATQN 357
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 182/308 (59%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 43 VEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQY 102
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
++ +LELNAS+DRGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 103 QNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKSSVKLVLLDEADAMTKDAQFALR 161
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + ++ + + E + +
Sbjct: 162 RVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVED 221
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ +
Sbjct: 222 SGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQF 281
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
DS+K I + + G A DI+ + + +P +++ ++ ++ ++ R+S G N
Sbjct: 282 ADSFKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDK 341
Query: 297 LQLSGLLA 304
LQL ++A
Sbjct: 342 LQLGSVIA 349
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 181/308 (58%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 41 VEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQY 100
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
++ +LELNAS+DRGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 101 QNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKSSVKLVLLDEADAMTKDAQFALR 159
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + ++ + + E + +
Sbjct: 160 RVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVED 219
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A V + GDMR+ALN LQSTH +T E V+ P P ++ + +
Sbjct: 220 SGLAAFVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIELISYWLLNEQF 279
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
DS+K I + + G A DI+ + + +P +++ ++ ++ ++ R+S G N
Sbjct: 280 ADSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDK 339
Query: 297 LQLSGLLA 304
LQL ++A
Sbjct: 340 LQLGSVIA 347
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 184/321 (57%), Gaps = 8/321 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D ++ + +S +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 43 VEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 102
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ-QKVTL-PPGRHKIVILDEADSMTDGAQQALRR 118
+ +LELNAS+DRGID VR +I+ FA Q + K+V+LDEAD+MT AQ ALRR
Sbjct: 103 HNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRR 162
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ TRFAL CN+ KII +QSRC R+ L + ++ + E E +
Sbjct: 163 VIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPES 222
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEA+ + GDMR+ALN LQSTH +T E V+ P P V+++ + +
Sbjct: 223 GLEALKCLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPQDVQQITHWLLNESFA 282
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+SYK I + + G A DI+ + + + +++ +I ++ ++ R+S G N L
Sbjct: 283 ESYKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKL 342
Query: 298 QLSGLL-----ARLCIVGSKN 313
QL L+ AR +V + N
Sbjct: 343 QLGSLIASFTRARSALVAAAN 363
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 182/319 (57%), Gaps = 3/319 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T D++ +ED ++ + F +P+++ GPPG GKT+TIL A+ L P+
Sbjct: 11 VEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTPAQ 70
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F+ VLELNAS+DRGI+ VR ++ FA + G K++ILDEAD+MT+ AQ ALRR
Sbjct: 71 FRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSG-FKLIILDEADAMTNDAQNALRRI 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E +++ RF L CN KII +QSRC R+ L Q++ ++ + E+E + T DG
Sbjct: 130 IEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVVEQEKVKVTEDG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ AQGDMR+ LN LQS F V + V+ P + +L + +
Sbjct: 190 KKALIDLAQGDMRKVLNILQSAATAFPEVNEDSVYTCVGHPLKSDIMNILKWLLNDDFST 249
Query: 240 SYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
++K I L + G A +DI+ + LD+P + I+ E+ ++ +R++ G + +
Sbjct: 250 TFKKIQELKIQKGLALQDILTELHTFLYRLDLPPDSLIEILTEMADIEIRLNGGTSEKIH 309
Query: 299 LSGLLARLCIVGSKNKKTD 317
L L++ ++ SK K D
Sbjct: 310 LGSLISAFHMIRSKLKPAD 328
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GKT+TIL C ++
Sbjct: 18 VEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDRE 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 78 FNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 136
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ ++ ++ + ++E + + DG
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKEECVDISPDG 196
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR++LN LQST+ +G VT + V+ P + +L + +
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSDIANILDWMLNKDFTS 256
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ + +D P +++ ++ ++ +V R++ G + +Q
Sbjct: 257 AYKNIMELKTLKGLALHDILTEVHLYVHRVDFPASVRMHLLIKMADVEYRLASGTSEKIQ 316
Query: 299 LSGLLA 304
LS L+A
Sbjct: 317 LSSLIA 322
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 179/313 (57%), Gaps = 13/313 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPEL 95
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDG 111
++ VLELNAS++RGI +R K+K FAQ V + PP KI+ILDEADSMT
Sbjct: 96 YRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPP--FKIIILDEADSMTGA 153
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ LT+ +++EIC KE
Sbjct: 154 AQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKE 213
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQST--HNGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ ++ +G++A+V ++GD+R+A+ LQST + +T V ++ P ++ +L
Sbjct: 214 NLKYSKEGIDALVKVSEGDLRKAITLLQSTARFSAEKEITESLVIEIAGVVPPKVIENLL 273
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C +GN + + +L GYA I+ V + + K I +++ V +
Sbjct: 274 QTCYKGNFEKLEVAVKNLVDEGYAATQILSQFHDVIIEEKLGDKQKSVITEKMAVVDKCL 333
Query: 290 SEGVNSLLQLSGL 302
+G + LQL L
Sbjct: 334 VDGADEYLQLLNL 346
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP D++ +ED + + F + +P+++ GPPG GKT+TIL AR + GP
Sbjct: 14 VEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIYGPKE 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA K G K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FGSMVLELNASDDRGIGIVRGEILNFASTKSIFKSG-FKLIILDEADAMTNDAQNALRRV 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ RF L CN KII +QSRC R+ L+ +Q+ ++ + E+E ++ T+DG
Sbjct: 133 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQERLTVTDDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ AQGDMR+ALN LQST F VT V++ P + M++ + +
Sbjct: 193 KKALMDLAQGDMRKALNILQSTSMAFEEVTENNVYQCVGLPLKSDISNMVITLLNEDFAF 252
Query: 240 SYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
SY I+ + G A +D++ I ++ P +K+ +I ++ + R++ G + +Q
Sbjct: 253 SYDQINKVKVSKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIENRLAAGTSEKIQ 312
Query: 299 LSGLLA 304
LS L+A
Sbjct: 313 LSSLIA 318
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRPQ D++ + D + ++ F + +P+++ GPPG GKT+TIL AR L
Sbjct: 17 VEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGKTSTILACARQLYKDKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVIQQESIDITPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQST + VT E + P + +L + +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYEKVTEETAYNCTGHPLRSDIANILDWALNKDFTT 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A +DI+ + + +D P +++ ++ ++ +V R++ G + +Q
Sbjct: 256 AYKQILELKTLKGLALQDILTEVHLLIHRVDFPPDIRIGLLIKLADVEHRLASGTDEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 174/296 (58%), Gaps = 3/296 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 43 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 102
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI+ VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 103 FGSMVLELNASDDRGIEIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 161
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 162 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDLSEDG 221
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 222 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 281
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N
Sbjct: 282 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLAKMADIEYRLSVGTN 337
>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 334
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 178/310 (57%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 18 VEKYRPVTLDDVVSHKDITNTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAQY 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS++RGID VR ++K FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 78 RKQILELNASDERGIDVVREQVKQFAETRTLFAKG-FKLIILDEADMMTQQAQAALRRVI 136
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L ++ +V + E E +S T+DG
Sbjct: 137 EQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPAIEVEKRVKTVVEAEQVSLTDDGK 196
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + + ++ PHP ++ ++ + + S
Sbjct: 197 KALLKLSRGDMRRALNVLQACHAAYDTIGETEIYNCTGNPHPSDIEAIVNSMLADEFTAS 256
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++ + + G A +D++ + +T+DI ++ ++ + R+S G + +QL
Sbjct: 257 YQMTSKMKTERGLALQDLLTGAYEYLETIDIKPHARIYLLDHLATTEHRLSTGGSEKMQL 316
Query: 300 SGLLARLCIV 309
+ LL I
Sbjct: 317 TALLGAFKIA 326
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 174/305 (57%), Gaps = 1/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + +++ ++D + + F + VP+++ GPPG GKT+TIL A+ + G
Sbjct: 32 VEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFYGPPGTGKTSTILACAKKMYGNRM 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGI VR +IK FA + G K+VILDEAD+MT AQ ALRR +
Sbjct: 92 QSMVLELNASDDRGIGVVREQIKEFASTRTITSSGGTKLVILDEADAMTSDAQAALRRVI 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF L CN KI IQSRC R+ L+ Q+L ++ + E E ++ T+DG
Sbjct: 152 EKYTRNTRFCLICNYVSKITPAIQSRCTRFRFAPLSSEQMLDRLNFVIESERVNVTDDGK 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ AQGDMR+ LN LQST F V V+ P P ++ ++ + +
Sbjct: 212 AALMRLAQGDMRKVLNILQSTAMAFDTVDETSVYTCTGFPLPADIETIVQWLLNEPFTSA 271
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I L + G A +DI+ + ++ P +++ +++++ ++ R+S G N +QL
Sbjct: 272 MANIGELKLQKGLALQDILREVHEFMARIEFPANVRIYLLKQLADIEYRLSAGTNERIQL 331
Query: 300 SGLLA 304
L+A
Sbjct: 332 GSLVA 336
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 175/310 (56%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D++ +++ + L + +P+++ GPPG GKT+ I+ AR L G ++
Sbjct: 31 VEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGKNY 90
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
VLELNAS+DRGID VRN+IK FA K G K++ILDEADSMT+ AQ +LRR +
Sbjct: 91 GSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQG-VKLIILDEADSMTNDAQFSLRRVI 149
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF L CN KII +QSRC R+ L ++Q+ +V I + E ++ T DG
Sbjct: 150 EKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIAQLEKLNMTEDGF 209
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI+ QGDMR+ LN LQ+T V V+ P P ++ + + +
Sbjct: 210 KAILRLGQGDMRRILNILQATSMAHDIVDEANVYLCTGNPLPKDIESVTQWLFNESFTAA 269
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + KL GYA DI+ +++R L++P ++ + E+ + R+S G LQL
Sbjct: 270 VRKCAEMQKLKGYATSDILQDVYRYTTELELPPRCRMYLYDELAKLEHRLSNGTTEELQL 329
Query: 300 SGLLARLCIV 309
+ L+A I
Sbjct: 330 ASLVAIFAIA 339
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 182/322 (56%), Gaps = 19/322 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--- 57
+EKYRP T D+V ++D V + F S +P+++ GPPG GKT+TIL +AR + G
Sbjct: 81 VEKYRPATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPPGTGKTSTILAVARKIYGGTG 140
Query: 58 --------------PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILD 103
S ++ VLELNAS+DRGID VR++IK FA ++ G +K++ILD
Sbjct: 141 NSIRGGVSGKGKEGSSMRNNVLELNASDDRGIDVVRDQIKNFASTRMIFSSG-YKLIILD 199
Query: 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK 163
EAD MT AQ ALRR +E Y+ RF + CN +II +QSRC R+ L ++ +
Sbjct: 200 EADMMTTTAQNALRRVIEQYTKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEVDRR 259
Query: 164 VIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
+ + + E+++ T DG EA++ ++GDMR+ALN LQ+ H+ + V ++ PHP
Sbjct: 260 IQHVVDAESVNLTQDGREALLKLSKGDMRRALNVLQACHSAYPVVDEGAIYACTGNPHPA 319
Query: 224 AVKEMLLNCVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEI 282
+ EM+ + + + +Y +++ G A +DII + LD+P ++ ++ +
Sbjct: 320 DIDEMVTSMMSDEFQTAYQRVVAIKTDKGLALQDIIAGLGEALSGLDMPPHARIYLLDHL 379
Query: 283 GNVHLRISEGVNSLLQLSGLLA 304
+ R+S G + LQ++ LL
Sbjct: 380 AQIEHRLSTGGSEKLQMTALLG 401
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 180/314 (57%), Gaps = 3/314 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 40 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH--KIVILDEADSMTDGAQQALRR 118
+ +LELNAS+DRGID VR +I+ FA + + K+V+LDEAD+MT AQ ALRR
Sbjct: 100 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRR 159
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ TRFAL CN+ KII +QSRC R+ L + ++ + E E +
Sbjct: 160 VIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEP 219
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GL A+V + GDMR+ALN LQSTH +T E V P P ++++ + +
Sbjct: 220 GLAAVVRLSNGDMRKALNILQSTHMASQQITEEAVHLCTGNPLPKDIQQISYWLLNESFA 279
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+S+K I + K G A DI+ + + +P +++ +I ++ ++ R+S G + L
Sbjct: 280 ESFKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKL 339
Query: 298 QLSGLLARLCIVGS 311
QL L+A S
Sbjct: 340 QLGSLVASFTWARS 353
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GKT+TIL C ++
Sbjct: 18 VEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDRE 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 78 FNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 136
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ ++ ++ + ++E + + DG
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEHVVKEERVDISPDG 196
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR++LN LQST+ +G VT + V+ P + +L + +
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSDIANILDWMLNKDFTS 256
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ + ++ P +++ ++ ++ ++ R++ G + +Q
Sbjct: 257 AYKNIMELKTLKGLALHDILTEVHLYVHRVNFPASVRMHLLVKMADIEYRLASGTSEKIQ 316
Query: 299 LSGLLA 304
LS L+A
Sbjct: 317 LSSLIA 322
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 175/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRPQ D++ + V ++ S +P+++ GPPG GKTTTIL A++L P+
Sbjct: 16 VEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLYTPAQ 75
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI TVR I FA K T+ G K++ILDEAD+MT AQ ALRR
Sbjct: 76 FASMVLELNASDDRGIGTVRGAILDFASTK-TMFQGGVKLIILDEADAMTHDAQNALRRI 134
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME Y+ RF + CN KII IQSRC R+ L ++L ++ + E+E I ++DG
Sbjct: 135 MEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVIEQEKIKISDDG 194
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ QGDMR+ LN LQST F V E V+ P + EML + + N+ D
Sbjct: 195 KQAVLTLGQGDMRKVLNILQSTFVSFSEVNEENVYTCVGHPLQCDIFEMLQSLLNDNLSD 254
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
SYK I + L G A DI+ + L++P + ++ + ++ ++ G + ++
Sbjct: 255 SYKKIQTIKTLKGLALSDIVTELHTWVHKLELPSKVVCLLLISLSDIEYNLNNGSSENIE 314
Query: 299 LSGLLA 304
L LL+
Sbjct: 315 LGKLLS 320
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 193/330 (58%), Gaps = 19/330 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + +D+ ++D ++ + + +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 34 VEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK-VTLPPGRH-KIVILDEADSMTDGAQQALRR 118
++ +LELNAS+DRGI+ VR +I+ FA K ++ P + K+VILDEAD+MT AQ ALRR
Sbjct: 94 QNMILELNASDDRGIEVVRQQIQDFASTKSISFGPKVNVKLVILDEADAMTKDAQFALRR 153
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ +TRF L CN + KII +QSRC R+ L A + ++ + ++E + T+
Sbjct: 154 VIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPANVTERLRYVIQQEGLDVTDG 213
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEM---LLN---- 231
GL AIV A GD+R+ALN LQS H+T E V+ P P ++++ LLN
Sbjct: 214 GLAAIVRLANGDLRKALNILQSAQMASPHLTEEAVYLCTGNPMPKDIEQIAYWLLNEPFS 273
Query: 232 -CVEGNMKDSYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVH 286
+ + + K+ H + K+ G A D+ + T+++P +++ +I + +V
Sbjct: 274 TSFQSILNNLIKLFHDITKMKTSKGLALVDVARELQPFVFTINMPPTVRVQLIDALADVE 333
Query: 287 LRISEGVNSLLQLSGLL-----ARLCIVGS 311
R++ G N LQL LL AR +V +
Sbjct: 334 YRLAFGTNEKLQLGALLGAFTRARTALVAA 363
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 181/308 (58%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 42 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS++RGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 102 SNMILELNASDERGIDVVRQQIQDFAGAR-SLSFGARPSVKLVLLDEADAMTKDAQFALR 160
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + + ++ I + E +S
Sbjct: 161 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDE 220
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++ + +
Sbjct: 221 GGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPNDIERIAFWLLNEPF 280
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
S+K I + + G A DII + +++P +++ +I + ++ R+S N
Sbjct: 281 STSFKHISDMKMRKGLALVDIIREVTMFVFKIEMPSDVRVKLINNLADIEYRLSFACNDK 340
Query: 297 LQLSGLLA 304
LQL L++
Sbjct: 341 LQLGALIS 348
>gi|311977779|ref|YP_003986899.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050826|sp|Q5UQ47.1|RFCS1_MIMIV RecName: Full=Putative replication factor C small subunit R395;
Short=RFC small subunit R395; AltName: Full=Clamp loader
small subunit R395
gi|55417014|gb|AAV50664.1| unknown [Acanthamoeba polyphaga mimivirus]
gi|308204801|gb|ADO18602.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061329|gb|AEJ34633.1| hypothetical protein MIMI_R395 [Acanthamoeba polyphaga mimivirus]
Length = 319
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 182/306 (59%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP D++ +++ +++ +F ++II+G PGVGKT+T+ C+A+ LLG
Sbjct: 8 IEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLGEDM 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LE+NA+ DRG+ ++ I F ++ + KI++LDEAD MT Q + +
Sbjct: 68 SQGYLEINAAEDRGVRSISTIIPPFCKK--VFAANKSKIILLDEADIMTSKCQYDINNMI 125
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + T+F CN+S KIIE IQS C +LR+ KLTD Q+ + +IC E I + GL
Sbjct: 126 KKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGL 185
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
I + + GDMR+++N+LQ T F +T V K+C P P +++++ C+E N++ +
Sbjct: 186 RTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCLESNLEKA 245
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I++++ KL Y DI+ + V K D+ E L+L +I + + IS+G+ S LQL+
Sbjct: 246 DEIMNNIIKLDYCYFDIVTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRSKLQLT 305
Query: 301 GLLARL 306
G++ RL
Sbjct: 306 GMICRL 311
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 177/304 (58%), Gaps = 2/304 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + ++V +ED V L+ +S +P+++ GPPG GKT+TIL A+ L G F
Sbjct: 66 VEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGADF 125
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K VLELNAS+DRGID VR +IK FA K G K+VILDEAD+MT+ AQ ALRR +
Sbjct: 126 KMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGV-KLVILDEADAMTNDAQFALRRVI 184
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + CN KII +QSRC R+ L Q+ ++ + ++E ++ T DG+
Sbjct: 185 EKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTITPDGV 244
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++ QGDMR+ LN LQSTH + V + + P ++ + + + KD+
Sbjct: 245 EAVMRLGQGDMRRVLNLLQSTHMAYQKVDERHAYLCAAAPLKEDMEYIRNALLTASFKDA 304
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ I L GY+ DI+ + +++P + + ++ E+ N R++ G + LQL
Sbjct: 305 FDGILKLTTAKGYSLGDIVQELALKVMEIELPAAVMVHLLDEMSNTEERLAHGGSERLQL 364
Query: 300 SGLL 303
L+
Sbjct: 365 GSLV 368
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 176/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D++ ++D + ++ F + +P+++ GPPG GKT+TIL A+ L P
Sbjct: 10 VEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTPQQ 69
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI+ VRN+I FA + G K++ILDEAD+MT+ AQ ALRR
Sbjct: 70 FNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSG-FKLIILDEADAMTNDAQNALRRV 128
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ RF L CN KII IQSRC R+ L Q+L ++ + E+E I T DG
Sbjct: 129 IEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEEKIKVTEDG 188
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ A GDMR+ +N LQST F V ++V+ P + ++ + ++
Sbjct: 189 RQALLSLAHGDMRRVINILQSTSMAFDEVNEDHVYTCVGHPLKSDIANVVSWMLNEDLTS 248
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L G A +DI+ ++ P +++ +++++ +V R+S G + LQ
Sbjct: 249 AYSKIRDLQTFKGLALQDILTETHLYVHKIEFPPNVRVFLLEKMADVEYRLSAGCSEKLQ 308
Query: 299 LSGLLA 304
L LLA
Sbjct: 309 LGSLLA 314
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 177/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P+++ GPPG GKT+TIL C ++
Sbjct: 25 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYKDKE 84
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 85 FNSMVLELNASDDRGIGIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQEAQNALRRV 143
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E E + ++DG
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLKHVIESEKVDVSDDG 203
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR++LN LQST+ FG VT E V+ +P + +L + +
Sbjct: 204 MKALVTLSNGDMRRSLNILQSTNMAFGKVTEETVYTCTGQPLKSDIANILDWMLNQDFTA 263
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L L G A DI+ I +D P +++ ++ ++ ++ R++ G + +Q
Sbjct: 264 AYHNIMELKTLKGLALHDILTEIHLFVHRVDFPPSVRIQLLIKMADIEHRLAAGTSEKIQ 323
Query: 299 LSGLLA 304
L L+
Sbjct: 324 LGALVG 329
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 8/321 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +++ ++D + + F +P+++ GPPG GKT+TIL AR L G F
Sbjct: 39 VEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYGDKF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA + G K++ILDEAD+MT AQ ALRR +
Sbjct: 99 RSMILELNASDDRGIDVVREQIKNFASTRKLFSSG-FKLIILDEADAMTQAAQNALRRVI 157
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF L CN KII +QSRC R+ L +AQ+ ++ I +E I+ T G
Sbjct: 158 EQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITHIINQEGINITQAGR 217
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEM---LLNCVEGNM 237
+A++ +QGDMR+ALN LQ+ H G+ T E ++ P P + ++ L N
Sbjct: 218 QAVLKLSQGDMRRALNILQAVHTGYPEATEETIYACTGSPCPADIDQIVAWLFNMDYTTA 277
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S K++ H + G A D++ + L++P+ ++ +++++ ++ I G + +
Sbjct: 278 LKSVKLLKH--EKGLALADLLSGLVVSLAGLELPKVSRIFLMEKLADIEYNIGVGCSEDI 335
Query: 298 QLSGLLA--RLCIVGSKNKKT 316
QL ++ RL + ++N K
Sbjct: 336 QLGAMVGAFRLSVDMAENVKA 356
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 175/307 (57%), Gaps = 2/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+V ++D + L+ F SS VP+++ GPPG GKT+TIL AR + GP++
Sbjct: 26 VEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ ++ELNAS+DRGID VR +IK FA + K++ILDEAD+MT AQ ALRR +
Sbjct: 86 RNQLMELNASDDRGIDAVREQIKNFASTRQIF-ASTFKMIILDEADAMTLAAQNALRRVI 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R+ L ++ V + + E+ + D
Sbjct: 145 EKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAK 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ ++GDMR+ALN LQ+ H + H+ ++ PHP + L + + +
Sbjct: 205 MAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIA 264
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ I + + G A +DI+ IF L+I K+ I+ ++ + R+S G + +QL
Sbjct: 265 FNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKIQL 324
Query: 300 SGLLARL 306
S ++A +
Sbjct: 325 SAMIASI 331
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 177/311 (56%), Gaps = 3/311 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRP+ ++++ ++D + ++ F +P+++ GPPG GKT+TIL C R+
Sbjct: 13 VEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTILACARRLYADRE 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR + FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 73 FNSMVLELNASDDRGIGIVRGPVLQFASTRTIFKRG-FKLVILDEADAMTGDAQNALRRV 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME ++ TRF L CN KII IQSRC R+ L Q+L ++ + ++E + T+DG
Sbjct: 132 MEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLPRLEHVIQEEKVDVTDDG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+AI+ A GDMR+ LN LQST V + V+ V +P + ++ + N
Sbjct: 192 KKAILQLANGDMRRVLNILQSTSMAHDVVDEDNVYLVTGQPLRSDIANIVNWMLNENFTT 251
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L L G A +DI+ + +D P +K+ ++Q++ +V R+S G N LQ
Sbjct: 252 AYNNIFQLKVLKGLALQDILTEVHLFVHRIDFPMAVKMVLLQKMADVEYRLSAGTNEKLQ 311
Query: 299 LSGLLARLCIV 309
LS ++A +V
Sbjct: 312 LSSVIAAFQVV 322
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 181/307 (58%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + +D+ ++D ++ + ++ +P++++ GPPG GKT+TIL +AR L GP F
Sbjct: 12 VEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLYGPQF 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ-QKVTL-PPGRHKIVILDEADSMTDGAQQALRR 118
++ +LELNAS+DRGID VR +I+ FA Q ++ K++ILDEAD+MT AQ +LRR
Sbjct: 72 QNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVKLIILDEADAMTKDAQFSLRR 131
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ TRF L CN KII +QSRC R+ L + ++ + ++E + T D
Sbjct: 132 IIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQERLDVTED 191
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GL AIV + GDMR+ALN LQST HVT V+ P P ++++ + + +
Sbjct: 192 GLSAIVRLSNGDMRKALNILQSTQMAEPHVTEAAVYSCTGNPTPKEIEQIASWLLNESFQ 251
Query: 239 DSYK-IIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+Y I+ G A D++ + T+ +P +++ +I + ++ R++ G N L
Sbjct: 252 SAYSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIEYRLASGPNEKL 311
Query: 298 QLSGLLA 304
QL L++
Sbjct: 312 QLGALVS 318
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 189/326 (57%), Gaps = 15/326 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ D+ + D ++ + ++ +P++++ GPPG GKT+TIL +AR L GP +
Sbjct: 42 VEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ-QKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ +LELNAS+DRGID VR +I+ FA Q +L K+V+LDEAD+MT AQ ALRR
Sbjct: 102 RNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRV 161
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ +TRFAL N+ KII +QSRC R+ L + ++ + E E + ++ G
Sbjct: 162 IEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCG 221
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDE--------PHPLAVKEMLLN 231
L A+V + GDMR+ALN LQSTH +T E ++ +E P P ++++
Sbjct: 222 LAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHW 281
Query: 232 CVEGNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + YK + + + G A DI+ I + +P +++ +I ++ ++ R+S
Sbjct: 282 LLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLS 341
Query: 291 EGVNSLLQLSGLL-----ARLCIVGS 311
G N LQL ++ AR IVG+
Sbjct: 342 FGCNDKLQLGAIISTFTHARSIIVGA 367
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 181/308 (58%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQY 100
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS++RGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 101 GNMILELNASDERGIDVVRQQIQDFASAR-SLSFGAKQSVKMVLLDEADAMTKDAQFALR 159
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E ++ +TRFAL CN+ KII +QSRC R+ L + ++ I + E + +
Sbjct: 160 RVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDD 219
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ + +
Sbjct: 220 GGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESF 279
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
S+K I + + G A DII + + +P +++ +I ++ ++ R+S N
Sbjct: 280 STSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDK 339
Query: 297 LQLSGLLA 304
LQL L++
Sbjct: 340 LQLGALIS 347
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 178/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + GP +
Sbjct: 32 VEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGPDY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR ++K FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 92 RKQILELNASDDRGIDVVREQVKQFAETRTLFSKG-FKLIILDEADMMTQAAQAALRRVI 150
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI +QSRC R++ L ++ ++ + E E++ T DG
Sbjct: 151 EQYTKNVRFCIICNYVNKITPAVQSRCTRFRFSPLPIKEVERRLEGVIEAESVKLTPDGK 210
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + + ++ P P ++ ++ + + S
Sbjct: 211 DALLKLSKGDMRRALNVLQACHAAYDVIGETEIYNCTGSPQPKDIETVVTSMLGDEFTTS 270
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++I L + G A +D+I + +T++ ++ ++ ++ + R+S G + +QL
Sbjct: 271 YEMISALKIERGLALQDLITGAYDYIETIEFGSQARVYLLDQLASTEYRLSTGGSEKIQL 330
Query: 300 SGLLA 304
+ LL
Sbjct: 331 TALLG 335
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 182/310 (58%), Gaps = 7/310 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+E++RPQ S+I G V+RL V+S P+++ +GPPG GKTT + L + + G +
Sbjct: 17 VERHRPQAVSEIRGQHAIVQRLAVYSEKKEFPHLLFAGPPGTGKTTAAMALTKDVFGEEY 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ +LE+NAS++R ++++R K+K FA+ T P G + KI+ LDEAD++T+ AQ ALRR
Sbjct: 77 RRNLLEMNASDERKLESIRTKVKQFAR---TSPYGGAQFKIIFLDEADALTNDAQGALRR 133
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME Y+ T RF L+CN S KIIEPIQSRCA+ R+ L+DA + +++ + E E + +D
Sbjct: 134 IMEQYAETCRFILSCNYSSKIIEPIQSRCAVFRFRPLSDADVNAQIHHVAEIEGVKLEDD 193
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNM 237
+A+ +QGD+R+AL LQ H+T + +++ P A+ + L+ C +G
Sbjct: 194 AGDALTRISQGDLRKALTGLQVASAINMHITRDLIYETSATAPPEALHQYLMACRDDGFH 253
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSL 296
++ L + G A D + + R T D + E KL + + + V R+ EG
Sbjct: 254 AARRRLRELLDRYGLAGTDFVNQLHRELYTADFLNEDAKLDLTEWMAEVEYRLVEGGGEQ 313
Query: 297 LQLSGLLARL 306
+QL L ARL
Sbjct: 314 IQLDALTARL 323
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 177/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G S+
Sbjct: 29 VEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIYGTSY 88
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K +LELNAS+DRGID VR +IK FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 89 KKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-FKLIILDEADMMTQAAQAALRRVI 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L ++ +V + E EN+ T +G
Sbjct: 148 EQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMTEVEKRVDMVVEAENVPLTTEGK 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ ++GDMR+ALN LQ+ H + + ++ PHP ++ ++ + + S
Sbjct: 208 NALLKLSKGDMRRALNVLQACHAAYDIIGESEIYTCTGNPHPSDIEIIVNSMLSDEFTAS 267
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++I + + G A +D++ F T+++ ++ ++ + + R+S G + +QL
Sbjct: 268 YQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHRLSTGGSEKIQL 327
Query: 300 SGLLA 304
+ LL
Sbjct: 328 TALLG 332
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 172/305 (56%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 40 VEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAGY 99
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K LELNAS+DRGID VR +IK FA+ + G +K++ILDEAD MT AQ ALRR +
Sbjct: 100 KKQTLELNASDDRGIDVVREQIKQFAETRTLFSKG-YKLIILDEADMMTTAAQAALRRVI 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI+ IQSRC R++ L ++ +V + E + T DG
Sbjct: 159 EQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDHVVAAEGVKLTEDGK 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + V+ P P ++ ++ + + S
Sbjct: 219 KALLKLSKGDMRRALNILQACHAAYDQTGETEVYNCTGSPEPADIETVVNSMITDEFTTS 278
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A +D++ + + +D P ++ ++ + R+S G + +QL
Sbjct: 279 YHMISTLKTERGLALQDLLIGAYEYIEGIDFPPAARVYLLDHLATTEHRLSTGGSEKIQL 338
Query: 300 SGLLA 304
+ LL
Sbjct: 339 TALLG 343
>gi|429965079|gb|ELA47076.1| hypothetical protein VCUG_01437 [Vavraia culicis 'floridensis']
Length = 303
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 187/308 (60%), Gaps = 12/308 (3%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ ++VGN++T++ ++ ++ ++P+++ +GP G GKTT + ++ S K
Sbjct: 8 EKYRPKEIDNVVGNQETIKSIQSILNANSMPHLLFNGPSGTGKTTVAKIIGEKIV--SDK 65
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
VLELNAS++RGIDTVR IK F+ + L G K++ILDE DSMT AQQA+RRTME
Sbjct: 66 KHVLELNASDERGIDTVRTTIKNFSMR---LSTG-LKVIILDECDSMTVAAQQAMRRTME 121
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+ + RF L CNN +KI EPIQSRCA+ +NK+ + + +++ EI EN++ + + L
Sbjct: 122 MCTGDCRFILVCNNIQKISEPIQSRCAIFTFNKIKNEDMKTRLNEIVANENLNLSEEALN 181
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
I+F + DMRQA+N LQS V + K+ +P P ++ +++ ++ M ++
Sbjct: 182 TILFLSDSDMRQAINILQSALYS-KQVDENAILKITGQPSPKLIENIIILLLKNKMAEAL 240
Query: 242 KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSG 301
+++ GY P+D++ + FRVAK +D E LK I LR+ EGV S LQ
Sbjct: 241 SKFDCIWEDGYDPQDLLVSFFRVAKNMDNYEILKC-----ISKYQLRLFEGVGSKLQFYS 295
Query: 302 LLARLCIV 309
LL + V
Sbjct: 296 LLRDISFV 303
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 174/311 (55%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRPQ D++ + D + ++ F +P++++ GPPG GKT+TIL AR L
Sbjct: 17 VEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLYKDKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLRHVIQEESIDITEDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQST +G VT + V+ +P + +L C+ +
Sbjct: 196 MKAIVTLSSGDMRRSLNVLQSTSMAYGKVTEDSVYTCTGQPLRSDIANILDWCLNKDFTS 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL-----RISEGV 293
+YK I L L G A DI+ + + +D P + + + R++ G
Sbjct: 256 AYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRXXXXYKCADASFFTFRHRLASGT 315
Query: 294 NSLLQLSGLLA 304
+ +QLS ++
Sbjct: 316 DEKIQLSSMVG 326
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 181/311 (58%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F S +P+++ GPPG GKT+TIL AR L P
Sbjct: 14 VEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q++ ++ +I E E + T+DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITDDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
A++ A+GDMR+ LN LQST F V + V+ P ++++L + GN ++
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGNSLE 252
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
DS+K + Y G A EDII + L++P + +I ++ + R+++G +
Sbjct: 253 DSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVA 312
Query: 298 QLSGLLARLCI 308
Q + L+A I
Sbjct: 313 QTAALVAAFFI 323
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 174/304 (57%), Gaps = 2/304 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D + F +P+++ GPPG GKT+TIL +AR + GP +
Sbjct: 29 VEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGPEY 88
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G K+VILDEAD MT AQ ALRR +
Sbjct: 89 RKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-FKLVILDEADMMTQAAQAALRRVI 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L ++ +V + E E ++ T DG
Sbjct: 148 EQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFSPLPIKEVERRVDLVIEAEGVTITPDGK 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ A+GDMR+ LN LQ+ + + +T V+ PHP ++ ++ + + +
Sbjct: 208 AALLRLARGDMRRVLNVLQACYAAYEKITENEVYACTGAPHPADIETIVNSMLGDEFTTA 267
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++I + + G A +D+ F T+++ ++ ++ + R+S G + +Q+
Sbjct: 268 YEMISKMKTERGLALQDLTAGAFDYIDTIELKPHARIYLLDHLATTEHRLSTGGSEKIQM 327
Query: 300 SGLL 303
+ LL
Sbjct: 328 TALL 331
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 181/311 (58%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F S +P+++ GPPG GKT+TIL AR L P
Sbjct: 14 VEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q++ ++ +I E E + T+DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEAEAVQITDDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
A++ A+GDMR+ LN LQST F V + V+ P ++++L + GN ++
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGNSLE 252
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
DS+K + Y G A EDII + L++P + +I ++ + R+++G +
Sbjct: 253 DSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVA 312
Query: 298 QLSGLLARLCI 308
Q + L+A I
Sbjct: 313 QTAALVAAFFI 323
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 177/305 (58%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G S+
Sbjct: 29 VEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIYGNSY 88
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K +LELNAS+DRGID VR +IK FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 89 KKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-FKLIILDEADMMTQAAQAALRRVI 147
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ RF + CN KI IQSRC R++ L ++ +V + E EN+ T +G
Sbjct: 148 EQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMTEVEKRVDMVVEAENVPLTTEGK 207
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ ++GDMR+ALN LQ+ H + + ++ PHP ++ ++ + + S
Sbjct: 208 NALLKLSKGDMRRALNVLQACHAAYDIIGESEIYTCTGNPHPSDIEIIVNSMLSDEFTAS 267
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y++I + + G A +D++ F T+++ ++ ++ + + R+S G + +QL
Sbjct: 268 YQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHRLSTGGSEKIQL 327
Query: 300 SGLLA 304
+ LL
Sbjct: 328 TALLG 332
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 15/311 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP F ++V +E V+ L F + +P+++ GPPG GKTTT+L AR + P+
Sbjct: 14 VEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYSPAK 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK----------VTLPPGRHKIVILDEADSMT 109
VLELNAS++RGID VRN I FAQ K LP K+VILDEAD+MT
Sbjct: 74 MASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLP---FKLVILDEADAMT 130
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRR +E Y++ RF + CN II IQSRC R+ L ++ ++ I +
Sbjct: 131 RDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQHIVD 190
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEML 229
E++ T DG +A++ ++GDMR +N LQST F V+ V++ +P P +KE++
Sbjct: 191 SESVKMTPDGQKALLTVSKGDMRTVINTLQSTAMSFDTVSESTVYQCIGQPTPNEMKEVV 250
Query: 230 LNCVEGNMKDSYKIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLR 288
+ K+ + I L+ GYA +D+I ++ + T+DIP+ SII +G V
Sbjct: 251 TCLLNKPSKECMETIKSRLFMNGYALQDVITHLHDIVFTMDIPDEAMTSIICGLGEVEEN 310
Query: 289 ISEGVNSLLQL 299
++ G ++ LQL
Sbjct: 311 LASGCSNELQL 321
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 184/312 (58%), Gaps = 5/312 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+TF+D++ +D + + F +S ++P+++ GPPG GKT+TIL A + G +F
Sbjct: 11 LEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTNF 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K VLELNAS+DRGID VRN+IK F + G K+VILDEAD+MT AQ ALRR M
Sbjct: 71 KSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATG-VKLVILDEADAMTSAAQMALRRIM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+++TRF L CN + KII +QSRC R+ L + + ++ +I E+E + D L
Sbjct: 130 EKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFEKDAL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEML--LNCVEGNMK 238
E I+ +QGDMR +N LQST G VT V++ P +++++ LN E +
Sbjct: 190 ETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLN-EEDDFS 248
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
Y + + + G+A DI+ I + T ++ K +++++ ++ + + G + LL
Sbjct: 249 SCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGSELL 308
Query: 298 QLSGLLARLCIV 309
L L+ I+
Sbjct: 309 NLCSLIGSFQIM 320
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRPQ D++ ++D + + F +P+++ GPPG GKTTTIL +A+ + P
Sbjct: 15 VEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAPKE 74
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR++I FA + G K+VILDEAD+MT+ AQ ALRR
Sbjct: 75 FNSMVLELNASDDRGIGIVRDRILSFASTRTLFKSG-FKLVILDEADAMTNDAQNALRRV 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF + CN KII +QSRC R+ L Q+ ++ + E+E ++ + DG
Sbjct: 134 IEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVIEQEKLTVSEDG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V A GDMR++LN LQS F VT V+ P ++ ++ + + +
Sbjct: 194 MDALVTLANGDMRRSLNILQSCSMAFDEVTEHTVYTCVGHPLRSDIEHIVKWMLNESFTE 253
Query: 240 SYK-IIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I+ G A D++ + +D P +++ +++++ +V R++ G + +Q
Sbjct: 254 AYKNILEMQTAKGLALNDVLTEVHHYVHRIDFPMNVRIHLLEKMADVEHRLASGTSESIQ 313
Query: 299 LSGLLA 304
LS L+A
Sbjct: 314 LSSLVA 319
>gi|148687478|gb|EDL19425.1| replication factor C (activator 1) 2, isoform CRA_c [Mus musculus]
gi|149063100|gb|EDM13423.1| replication factor C (activator 1) 2, isoform CRA_a [Rattus
norvegicus]
gi|149063101|gb|EDM13424.1| replication factor C (activator 1) 2, isoform CRA_a [Rattus
norvegicus]
Length = 152
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 121/143 (84%)
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA 224
+ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL
Sbjct: 1 MNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLL 60
Query: 225 VKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
VKEM+ +CV+ N+ ++YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG
Sbjct: 61 VKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGY 120
Query: 285 VHLRISEGVNSLLQLSGLLARLC 307
H++++EGVNSLLQ++GLLARLC
Sbjct: 121 THMKVAEGVNSLLQMAGLLARLC 143
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 179/316 (56%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL +R L GP
Sbjct: 40 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAASRELYGPEL 99
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V PP KIVILDEADSMT
Sbjct: 100 FRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPP--FKIVILDEADSMTSA 157
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L D +++ ICEKE
Sbjct: 158 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKE 217
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ TN+ + +V ++GD+R+A+ LQS G +T E V ++ + +L
Sbjct: 218 NVKITNEAISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIVTEIAGVVPKETLDCVL 277
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQEIGNVHLR 288
+ C G+ + ++ +L G+A ++ + V + D+ + K I +++ V
Sbjct: 278 VACQSGSFEKLETVVKNLINNGHAATQLVNQLHDVILERGDLTDKQKAFITEKLAEVDKC 337
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQ+ GL A
Sbjct: 338 LADGADEYLQMLGLFA 353
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 177/310 (57%), Gaps = 6/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + +K F G +P++++ GPPG GKT+TIL + + L G
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKR 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI+ +R++IK FA+ K T K++ILDEAD MT AQ A+R
Sbjct: 76 SSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMR 135
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R+ L + +K ++I + EN++ T
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTE 195
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
G+++++ GDMR+ LN LQ ++ + + D P P K++L +G
Sbjct: 196 GGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFTKG 255
Query: 236 NMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
++K+SY+ + +L Y GY+ +DI+ ++ T D P+ +++ G + R S G +
Sbjct: 256 SIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGAS 315
Query: 295 SLLQLSGLLA 304
+ LS L++
Sbjct: 316 EQITLSALIS 325
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +++ ++D + ++ F S +P+++ GPPG GKT+TIL C ++
Sbjct: 18 VEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDRE 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR + FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 78 FNSMVLELNASDDRGIDIVRGPVLSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 136
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ ++ ++ + ++E++ + DG
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEHVDISPDG 196
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR++LN LQST+ + VT + V+ P + +L + +
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNMAYSKVTEDTVYTCTGHPLRSDIANILDWMLNKDFTS 256
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ I +D P +++ ++ ++ ++ R++ G + +Q
Sbjct: 257 AYKNIMELKTLKGLALHDILTEIHLYVHRVDFPALVRIHLLVKMADIEYRLASGTSEKIQ 316
Query: 299 LSGLLA 304
LS ++A
Sbjct: 317 LSSMIA 322
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 184/314 (58%), Gaps = 5/314 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+TF+D++ +D + + F +S ++P+++ GPPG GKT+TIL A + G +F
Sbjct: 11 LEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTNF 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K VLELNAS+DRGID VRN+IK F + G K+VILDEAD+MT AQ ALRR M
Sbjct: 71 KSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATG-VKLVILDEADAMTSAAQMALRRIM 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ +TRF L CN + KII +QSRC R+ L + + ++ +I E+E + D L
Sbjct: 130 EKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFEKDAL 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEML--LNCVEGNMK 238
E I+ +QGDMR +N LQST G VT V++ P +++++ LN E +
Sbjct: 190 ETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLN-EEDDFS 248
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
Y + + + G+A DI+ I + T ++ K +++++ ++ + + G + LL
Sbjct: 249 SCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGSELL 308
Query: 298 QLSGLLARLCIVGS 311
L L+ I+ +
Sbjct: 309 NLCSLIGSFQIMKT 322
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V + D + F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 37 VEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGNDY 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G K++ILDEAD MT AQ ALRR +
Sbjct: 97 RKQILELNASDDRGIDVVREQIKNFAETRTLFAKG-FKLIILDEADMMTTAAQSALRRVI 155
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KII IQSRC R++ L ++ ++ + E E + T DG
Sbjct: 156 EQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVEKRLNSVIEAEGVKLTEDGK 215
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + ++ PHP ++ ++ + ++ + S
Sbjct: 216 KALLKLSKGDMRRALNVLQACHAAYDRSGEAEIYNCTGNPHPSDIETIVNSMLQDDFTTS 275
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L + G A D+I + +T+ ++ ++ + R+S G N +QL
Sbjct: 276 YNLISALKTERGLALPDLINGAYEYLQTIQFKPNARIYLLDFLATTEHRLSTGGNEKIQL 335
Query: 300 SGLLA 304
+ LL
Sbjct: 336 TALLG 340
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 177/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+ +++ ++D + + F +P+++ GPPG GKT+TIL +A+ + P
Sbjct: 19 VEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIYSPKE 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA + G +KIVILDEAD+MT AQ ALRR
Sbjct: 79 FNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSG-YKIVILDEADAMTRDAQNALRRV 137
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF + CN KII +QSRC R+ L Q++ ++ + ++E + T DG
Sbjct: 138 IEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHVIQQEQCNVTEDG 197
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V A GDMR+ALN LQSTH V + V+ P ++ ++ + N
Sbjct: 198 MKALVTLANGDMRKALNILQSTHMAHDVVNEDNVYTCVGHPLRRDIENIINWVLNENFTS 257
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I+ + G A +DI+ + LD+P +K+ ++ ++ V R++ G N +Q
Sbjct: 258 AYNNILEMKTEKGLALQDILTEVHTYVHRLDLPINVKIHLLDKMAEVEHRLASGTNEKIQ 317
Query: 299 LSGLLA 304
LS L+A
Sbjct: 318 LSSLIA 323
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 43 VEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGKDY 102
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G +K++ILDEAD MT AQ ALRR +
Sbjct: 103 RKQILELNASDDRGIDVVREQIKNFAETRTLFSKG-YKLIILDEADMMTTAAQAALRRVI 161
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KII +QSRC R++ L ++ ++ + E E + T DG
Sbjct: 162 EQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIETEGVKITGDGR 221
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + V+ P P + ++ + S
Sbjct: 222 KALLKLSKGDMRRALNVLQACHAAYDETGEREVYHCTGTPDPADIANIVNSMFSDEFTTS 281
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
YK+I L G A +D++ + L++ ++ ++ R+S G + +QL
Sbjct: 282 YKMISSLKTDRGLALQDLLNGAYEYVDELELKPHARIYLLDYFATAEYRLSAGASEKIQL 341
Query: 300 SGLLA 304
+ LL
Sbjct: 342 TALLG 346
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 176/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP++ D++ +ED + + F + +P+++ GPPG GKT+TIL AR L +
Sbjct: 11 VEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYSTTQ 70
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VRN+I FA + G K++ILDEAD+MT AQ ALRR
Sbjct: 71 FNSMVLELNASDDRGIGVVRNQILSFASTRTIFNKG-FKLIILDEADAMTKDAQNALRRV 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME + TRF L CN KII IQSRC R+ LT ++ S++ I + E ++ T DG
Sbjct: 130 MEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKVEQLNVTEDG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L A+V A GDMR+ALN LQS+ + V + V+K P +K+++ + +
Sbjct: 190 LNALVTLANGDMRKALNILQSSSMAYNEVDEDGVYKCTGRPRRDDIKKIMKWMLNEDYTT 249
Query: 240 SYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L A +DII I + P +++ ++ ++ ++ R++ G + LQ
Sbjct: 250 AYRSIMELNMTTSMALQDIIEQIHLFVHEVHFPVAVRIYLLDKLADIEHRLASGTSEKLQ 309
Query: 299 LSGLLA 304
L L++
Sbjct: 310 LGSLVS 315
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 178/308 (57%), Gaps = 9/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRPQ D++ +ED + + F +P+++ GPPG GKT+TIL A+ + P
Sbjct: 11 VEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQIYSPKE 70
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA K G K+++LDEAD+MT+ AQ ALRR
Sbjct: 71 FTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG-FKLIVLDEADAMTNDAQNALRRV 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ RF L CN KII +QSRC R+ LT AQ+ ++ + +E ++ T DG
Sbjct: 130 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRIDHVITQERLTVTADG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ AQGDMR+ALN LQST F V V+ P + +++ + + +
Sbjct: 190 KKALMDLAQGDMRKALNILQSTSMAFDEVNETNVYLCVGHPLKEDISDIVSTLLNEDFEY 249
Query: 240 SYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
SY +H+ KL G A +D++ + +++P+ +K+ +I ++ + R++ G +
Sbjct: 250 SY---NHINKLKVGKGLALQDVLTQVHLYVHRIELPDKVKMYLIDKMAEIEYRLAAGTSE 306
Query: 296 LLQLSGLL 303
+QLS L+
Sbjct: 307 KIQLSSLI 314
>gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 315
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 175/308 (56%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQ+F +I+G ++ VE+LK + + ++I+SGPPGVGKTT+ + LA+ + GP +
Sbjct: 5 IEKYRPQSFDEIIGQKEIVEKLKAMAEKKEIQHMILSGPPGVGKTTSAVVLAKAVFGPDW 64
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ELNAS+DR + ++ K+K FA+ K P KI++ DEADS+T AQQALRR M
Sbjct: 65 TQNFIELNASDDRKLSVIQGKVKEFARTKPIDAP--FKIILFDEADSLTQEAQQALRRMM 122
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y NT RF + N IIEP+QSRCA+LR+ L+ + + I E E + + +
Sbjct: 123 EEYINTCRFVFSVNYQSNIIEPLQSRCAILRFQPLSKEDVHKFIKRIAESEKLDIDKEAM 182
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ + ++GD+R +N +QS N + A+ V + + L + G+ K S
Sbjct: 183 DALDYVSRGDLRTLVNLMQSLSNVSKKIDAKAVLQSSGLMDISKTIDGLKTALSGDFKKS 242
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+I + G ++++ +IF V T DI E +K + +++ RI EG +Q
Sbjct: 243 REIFSEIIDNGVNMKELLISIFNVISTTDIVNEKVKNYVFEKLAETDYRIVEGATPFIQF 302
Query: 300 SGLLARLC 307
LA L
Sbjct: 303 QAFLAFLA 310
>gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 313
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 176/308 (57%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+F +++G +D VE+LK SS + ++I+SGPPGVGKTT + LA+ + G ++
Sbjct: 5 VEKYRPQSFDEVIGQKDIVEKLKAMSSKKEIQHMILSGPPGVGKTTCAVVLAKEVFGSTW 64
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ELNAS+DR + ++ K+K FA+ K P KI++ DEADS+T AQQALRR M
Sbjct: 65 NQNFIELNASDDRKLSVIQGKVKEFARTKPIDSP--FKIILFDEADSLTQEAQQALRRMM 122
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+T RF + N IIEP+QSRCA+LR+ L+ + + I EKE + ++
Sbjct: 123 EEYSSTCRFLFSVNYQSNIIEPLQSRCAILRFQPLSKTDVTKFIDRIAEKEKLEIDSEAK 182
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ + ++GD+R +N +QS N + A+ V + E L + G+ K S
Sbjct: 183 DALEYVSRGDLRNLVNLMQSLANVSNKIDAKAVLQSSGLMDISKTIEGLKAALAGDFKKS 242
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGVNSLLQL 299
I + G ++++ +IF V T +I + +K I +++ RI EG +Q
Sbjct: 243 RAIFSEIIDSGINMKELLISIFNVVSTTEIANDKIKNYIFEKLAETDYRIVEGATPFIQF 302
Query: 300 SGLLARLC 307
LA L
Sbjct: 303 QAFLAFLS 310
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 176/310 (56%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP SD+V ++ ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 33 VEKYRPVALSDVVSHDGITTTIENFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGNDY 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K +LELNAS+DRGID VR +IK FA+ + TL K++ILDEAD MT AQ ALRR +
Sbjct: 93 KRQILELNASDDRGIDVVREQIKQFAETR-TLFRRSFKLIILDEADMMTQAAQSALRRII 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L + +V + E E++ DGL
Sbjct: 152 EQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIQDVERRVRHVIEAEDVKIEPDGL 211
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + T ++ PHP ++ ++ + + +
Sbjct: 212 DALLKLSKGDMRRALNILQACHAAYDRTTETEIYNCTGSPHPADIQAIVQSMMTEEFTTA 271
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y I + + G A +D+I + +++++P ++ ++ + + R+S G + LQ
Sbjct: 272 YHNISRIRVERGLALQDLITGAYDYVESIELPPQARVYLLDHLADTEHRLSTGGSEKLQF 331
Query: 300 SGLLARLCIV 309
+ LL I
Sbjct: 332 TALLGAFKIA 341
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 180/310 (58%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRPQ D++ +ED + + F +P+++ GPPG GKT+TIL A+ + P
Sbjct: 13 VEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQIYSPKE 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA K G K+++LDEAD+MT+ AQ ALRR
Sbjct: 73 FTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG-FKLIVLDEADAMTNDAQNALRRV 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ RF L CN KII +QSRC R+ L+ AQ+ ++ + +E ++ T DG
Sbjct: 132 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRIDHVITQERLTVTADG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ AQGDMR+ALN LQST F V V+ +P +KE + + V + +
Sbjct: 192 KKALMDLAQGDMRKALNILQSTSMAFSEVNETNVYLCVGQP----LKEDISDIVSTLLNE 247
Query: 240 SYKIIH-HLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+ + H+ KL G A +D++ + +++P+ +K+ +I ++ + R++ G +
Sbjct: 248 DFTYCYSHISKLKVGKGLALQDVLTQVHLYVHRIELPDQVKMRLIDKMAEIEYRLAAGTS 307
Query: 295 SLLQLSGLLA 304
+QLS L++
Sbjct: 308 EKIQLSSLIS 317
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 181/314 (57%), Gaps = 11/314 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ D+ + D V+ + ++ +P++++ GPPG GKT+TIL +AR L G +
Sbjct: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQY 100
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS++RGID VR +I+ FA + +L G K+V+LDEAD+MT AQ ALR
Sbjct: 101 GNMILELNASDERGIDVVRQQIQDFASAR-SLSFGAKQSVKMVLLDEADAMTKDAQFALR 159
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E ++ +TRFAL CN+ KII +QSRC R+ L + ++ I + E + +
Sbjct: 160 RVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDD 219
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ + +
Sbjct: 220 GGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESF 279
Query: 238 KDSYKIIHHLYKL-------GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
S+K I + + G A DII + + +P +++ +I ++ ++ R+S
Sbjct: 280 STSFKCILNYQSISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLS 339
Query: 291 EGVNSLLQLSGLLA 304
N LQL L++
Sbjct: 340 FACNDKLQLGALIS 353
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 182/311 (58%), Gaps = 12/311 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D++ +E+ ++ + F +P+++ GPPG GKT+TIL AR L P+
Sbjct: 15 VEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTPAQ 74
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLE+NAS+DRGI+ VR +I FA G K++ILDEAD+MT+ AQ ALRR
Sbjct: 75 FNSMVLEMNASDDRGINIVRGQILSFASTGTMYRSG-FKLIILDEADAMTNDAQNALRRI 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q+L ++ I ++EN++ T DG
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ + GDMR+ LN LQST FG VT E V+ P P+ +K N V +
Sbjct: 194 KQALITLSGGDMRKVLNVLQSTWLAFGAVTEENVYSCVGHPLPIDIK----NIVNWLFNE 249
Query: 240 SY-----KIIHHLYKLGYAPEDIIGNI-FRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
SY KI K G A +DI+ + + K + P+ + + +I ++ + R+S G
Sbjct: 250 SYELCYCKIQDIKLKKGLALQDILTELHLFIIKVFEFPDSILIDLIIKLAEIEKRVSIGC 309
Query: 294 NSLLQLSGLLA 304
+ +QL+ L++
Sbjct: 310 SEAVQLNALVS 320
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQT DI G E+ VERL+ + + +VP+++ SGP GVGKTT +AR + G +
Sbjct: 19 IEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDE+DS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDESDSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + V EI E I T+ G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAG 195
Query: 180 LEAIVFTAQGDMRQALNNLQST 201
++A+V+ A GDMR+A+N+LQ+
Sbjct: 196 VDALVYAADGDMRRAINSLQAA 217
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 184/311 (59%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+ G + V ++ F + G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 16 VEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALAREIYGRNY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N S K+ + SRC R+ L + ++ + EN+ +++
Sbjct: 135 EKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVLVHENLKLSDEAK 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGF-----GHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
EA++ +QGDMR+ LN LQ++ + AE +++ C P P +K +L + +E
Sbjct: 195 EALITLSQGDMRRVLNVLQASKATLDDPVKDEIDAEVIYECCGAPRPNDLKTVLKSILED 254
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPL-KLSIIQEIGNVHLRISEGV 293
+ +Y + + L G A D+I I ++ + ++ L +++++ ++G++ IS+G
Sbjct: 255 DWSTAYYTLTKIRSLKGLALIDLIEGIVKILEDYELKNELTRITLLTKLGDIEYAISKGG 314
Query: 294 NSLLQLSGLLA 304
N +Q S ++
Sbjct: 315 NEKIQSSAVIG 325
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 180/311 (57%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F S +P+++ GPPG GKT+TIL AR L P
Sbjct: 14 VEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q++ ++ +I E E + T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG-NMK 238
A++ A+GDMR+ LN LQST F V + V+ P ++++L + G +++
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLE 252
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
DS+K + Y G A EDII + L++P + +I ++ + R+++G +
Sbjct: 253 DSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVA 312
Query: 298 QLSGLLARLCI 308
Q + L+A I
Sbjct: 313 QTAALVAAFFI 323
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 181/310 (58%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRP+ D++ +ED ++ + F + +P+++ GPPG GKT+TIL AR L
Sbjct: 14 VEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILACARKLYTAGQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLE+NAS+DRGI VR +I FA TL K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FNSMVLEMNASDDRGIGIVRGQILNFASTG-TLYKSGFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q+L ++ I ++EN++ + DG
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPRLETIIKEENLNVSEDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
EA++ + GDMR+ LN LQST FG VT E V+ P P+ +K N V + +
Sbjct: 193 KEALIALSGGDMRKVLNVLQSTWLAFGTVTEETVYTCVGHPLPIDIK----NIVNWLLNE 248
Query: 240 SY-----KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
SY KI K G A +DI+ + ++ P+ + + +I ++ + R++ G +
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTQLHLFVNKIEFPDSILIELIIKLAEIEKRVAIGCS 308
Query: 295 SLLQLSGLLA 304
+QL+ L++
Sbjct: 309 EPVQLNALVS 318
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 176/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQ D++ ++D + ++ F S +P+++ GPPG G+T+TIL C ++
Sbjct: 17 VEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAKQLYKEKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR + FA + G K+VILDEAD MT AQ ALRR
Sbjct: 77 FTSMVLELNASDDRGIDVVRGPVLSFASTRTIFKRG-FKLVILDEADHMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ TR L CN KII +QSRC R+ L+ Q++ ++ + ++E+I G
Sbjct: 136 IEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEYVVQQESIDINPGG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++AIV + GDMR++LN LQST +G VT + V+ P + +L + +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANILDWSLNKDFTS 255
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ + + +D P +++ ++ ++ ++ R++ G N +Q
Sbjct: 256 AYKEILQLKTLKGLALNDILTEVHLLIHRVDFPPAIRIGLLIKLADIEHRLASGTNEKIQ 315
Query: 299 LSGLLA 304
LS ++A
Sbjct: 316 LSSMVA 321
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 174/306 (56%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V ++D ++ F +P+++ GPPG GKT+TIL +AR + G F
Sbjct: 39 VEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYGDDF 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGID VR +IK FA+ + G +K++ILDEAD MT AQ ALRR +
Sbjct: 99 RKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-YKLIILDEADMMTQAAQAALRRVI 157
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R++ L ++ +V + + E + DG
Sbjct: 158 EQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDAEGVQLREDGK 217
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + + ++ PHP ++ ++ + + S
Sbjct: 218 KALLKLSKGDMRRALNVLQACHAAYDEIGETEIYNCTGNPHPSDIETIVNSMLADEFTTS 277
Query: 241 YKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
Y+ + + K G A +D++ F +T+++ + ++ + R+S G + +Q
Sbjct: 278 YQSVINALKTERGLALQDLLAGAFDYIETIELKPHARAYLLDHLATTEYRLSTGGSEKIQ 337
Query: 299 LSGLLA 304
L+ LL
Sbjct: 338 LTALLG 343
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T +D+ + L+ S ++P+++ GPPG GKT+TIL L+R L GP
Sbjct: 26 VEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSRELFGPQL 85
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVT-------LPPGRHKIVILDEADSMTDGA 112
K+ VLELNAS++RGI VR KIK FA V+ PP KI+ILDEAD+MT A
Sbjct: 86 MKERVLELNASDERGISVVREKIKTFASTSVSKGVDGYPCPP--FKIIILDEADAMTAAA 143
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YSN TRF L CN +IIEP+ SRCA R+ L+ L+ ++ I +KE+
Sbjct: 144 QSALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHIRDKED 203
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEMLL 230
+ +++ L I+ GDMRQA+ LQS G V +V ++ + ++L
Sbjct: 204 VQCSDEVLARIIDLVDGDMRQAITFLQSASRLCGSSGVEVHHVEEIAGAIPNAVMTDLLD 263
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRI 289
C +G+ ++ + + + G++ + I+ + + V + DI + K I ++ V R+
Sbjct: 264 KCRQGSFENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKADIAHKLAQVDKRL 323
Query: 290 SEGVNSLLQLSGLLA 304
+G + LQ+ L A
Sbjct: 324 VDGADEELQIMDLCA 338
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 183/314 (58%), Gaps = 10/314 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ D+ + D ++ + ++ +P++++ GPPG GKT+TIL +AR L GP +
Sbjct: 42 VEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ-QKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ +LELNAS+DRGID VR +I+ FA Q +L K+V+LDEAD+MT AQ ALRR
Sbjct: 102 RNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRV 161
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ +TRFAL N+ KII +QSRC R+ L + ++ + E E + ++ G
Sbjct: 162 IEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHVIEAEGLGVSDCG 221
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDE--------PHPLAVKEMLLN 231
L A+V + GDMR+ALN LQSTH +T + K+ +E P P ++++
Sbjct: 222 LAALVRLSNGDMRKALNILQSTHMASKEITEKESKKITEEEVYLCTGNPLPKDIEQISHW 281
Query: 232 CVEGNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + YK I + + G A DI+ + + +P + + +I ++ ++ R+S
Sbjct: 282 LLNKPFDECYKNISEIKTRKGLAIVDIVREVTMFVLKIKMPSHVSVQLINDLADIEYRLS 341
Query: 291 EGVNSLLQLSGLLA 304
G N LQL +++
Sbjct: 342 FGCNDKLQLGAIIS 355
>gi|336121562|ref|YP_004576337.1| Replication factor C [Methanothermococcus okinawensis IH1]
gi|334856083|gb|AEH06559.1| Replication factor C [Methanothermococcus okinawensis IH1]
Length = 883
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 175/284 (61%), Gaps = 13/284 (4%)
Query: 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ 88
GN+P ++ TT LCLAR L G +++D LELN+S++RGID +R K+K FA+
Sbjct: 607 GNLPTVL-------HNTTAALCLARDLYGENWRDNFLELNSSDERGIDVIRTKVKDFART 659
Query: 89 KVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSR 146
K P G KI+ LDE+D++T AQ ALRRTME YS+ RF L+CN +II PIQSR
Sbjct: 660 K---PIGDAPFKIIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSRIIPPIQSR 716
Query: 147 CAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG 206
CA+ R++ L ++ K+ EI E E I+ G++AI++ ++GD+R+A+N LQ+
Sbjct: 717 CAIFRFSPLKREDIIKKIKEIAENEGITIDESGIDAIIYVSEGDLRKAINVLQTAATVSK 776
Query: 207 HVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVA 265
++ E ++KV + P + +ML + ++ +++++L G + EDI+ +FR
Sbjct: 777 NINDEIIYKVSSKARPDEIIKMLELALNNKFIEARELLYNLMIDWGMSGEDILLQMFREI 836
Query: 266 KTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309
LDI E K+S+++ IG RI EG N +QLS LLA++ ++
Sbjct: 837 PNLDIEERKKVSLVEAIGECDFRIVEGANERIQLSALLAKIGMM 880
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRP+T +I G+++ ++RLK + ++P+++ SGPPGVGK T
Sbjct: 6 VEKYRPKTLDEITGHDEIIKRLKSYVKKKSMPHMLFSGPPGVGKCLT 52
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 177/313 (56%), Gaps = 13/313 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 35 VEKYRPKCMEEVAFQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTILAAARELYGPEL 94
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
++ VLELNAS++RGI VR K+K FAQ V PP KI+ILDEADSMT+
Sbjct: 95 YRQRVLELNASDERGIQVVREKVKRFAQLTVAGHRTDGKPCPP--FKIIILDEADSMTNA 152
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L + ++++IC+KE
Sbjct: 153 AQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQVQEERLLDICDKE 212
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ ++ +G+ A+V ++GD+R+A+ LQS N +T V ++ P + +L
Sbjct: 213 NLKYSKEGIAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEIAGVVPPKMIDNLL 272
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C +G + + ++ GYA II + ++ + K +I +++ V +
Sbjct: 273 KICYKGTFEKLEIAVRNMVDEGYAATQIINQLHEAIIEEELNDKQKSAITEKMAVVDKCL 332
Query: 290 SEGVNSLLQLSGL 302
+G + LQ+ L
Sbjct: 333 VDGADEYLQMLSL 345
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 177/311 (56%), Gaps = 9/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPEL 95
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI VR+K+K FAQ V T P G+ KI+ILDEADSMT AQ
Sbjct: 96 YRQRVLELNASDERGIQVVRDKVKNFAQLTVAGTRPDGKSCPPFKIIILDEADSMTAPAQ 155
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L + +++EICEKEN+
Sbjct: 156 AALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQIQEERLLEICEKENL 215
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+T + + A+V ++GD+R+A+ LQS N +T V ++ + +L
Sbjct: 216 KYTKESIAALVRVSEGDLRKAITFLQSAARLNVDKEITDCAVIEIAGVVPDKMIDNLLQI 275
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
C G + + ++ GYA I+ + D+ + K +I +++ V +S+
Sbjct: 276 CFRGTFEKLEVAVRNMVDEGYAATQILTQLHECVIEQDLSDKQKSTITEKMAVVCKCLSD 335
Query: 292 GVNSLLQLSGL 302
G + LQL L
Sbjct: 336 GADEYLQLLSL 346
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 184/332 (55%), Gaps = 22/332 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP ++V +E V+ L F + +P+++ GPPG GKTTT+L AR + P+
Sbjct: 32 VEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTK 91
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV-----------TLPPGRHKIVILDEADSM 108
VLELNAS++RGID VRN I FAQ K T+P K+VILDEAD+M
Sbjct: 92 MASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVP---FKLVILDEADAM 148
Query: 109 TDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC 168
T AQ ALRR +E Y++ RF + CN I+ IQSRC R+ L ++ ++ I
Sbjct: 149 TKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIV 208
Query: 169 EKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEM 228
E E + T DG +A++ ++GDMR +N LQST F V+ V++ +P P +KE+
Sbjct: 209 ETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEV 268
Query: 229 LLNCVEGNMKDSYKIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
+ + K I L++ GYA +D+I ++ TLDIP+ +II +G V
Sbjct: 269 VKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEE 328
Query: 288 RISEGVNSLLQLSGLLA------RLCIVGSKN 313
+S G ++ QL+ ++A RLC+ KN
Sbjct: 329 NLSTGCSNETQLAAVVAAFFEAKRLCVKEMKN 360
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 182/316 (57%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ + PP KIVILDEADSMT
Sbjct: 99 FRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKMCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D+ +++++ EKE
Sbjct: 157 AQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEML 229
++ +N+ + +V ++GD+R+A+ LQS G +T + + ++ + E+L
Sbjct: 217 HVKISNEAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAGVIPKETIDELL 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
L C G+ + + +L G+A ++ + + ++ D + K +I++++ V
Sbjct: 277 LGCQSGSFEKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKC 336
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 337 LADGADEFLQLMSLCA 352
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 175/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRP+ D++ + D + ++ F + +P+++ GPPG GKT+TIL +A+ L
Sbjct: 14 VEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPDKQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 74 FGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSG-FKLVILDEADAMTQDAQNALRRV 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME ++ TRF L CN KII +QSRC R+ L+ Q+L ++ + E E ++ T+DG
Sbjct: 133 MEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++++ AQGDMR+ LN LQST + V ++V+ +P P + ++ + +
Sbjct: 193 RKSLLRLAQGDMRKVLNILQSTSMAYSVVNEDHVYLCTGQPQPTDIGNIVDWMLNKDFTT 252
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y I L L G A +DI+ +D P +++ ++ ++ V R++ G + +Q
Sbjct: 253 AYTNILKLKTLKGLALQDILEETHSYVHRVDFPAKIRIHLLDKMAEVEYRLASGTSEKIQ 312
Query: 299 LSGLLA 304
L ++A
Sbjct: 313 LGSMIA 318
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 177/311 (56%), Gaps = 9/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 34 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPEL 93
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI VR K+K FAQ V T P G+ KI+ILDEADSMT AQ
Sbjct: 94 YRQRVLELNASDERGIQVVREKVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQ 153
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L + +++EICEKEN+
Sbjct: 154 AALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEKENL 213
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+T + +EA+V ++GD+R+A+ LQ N +T + ++ ++ +L
Sbjct: 214 KYTRESIEALVQVSEGDLRKAITFLQCAARLNMDKEITDRAIVEIAGVVPSKMIEGLLQT 273
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
C +G + + +L GYA I+ + D+ + K I +++ V +S+
Sbjct: 274 CFKGTFERLEVTVRNLVNDGYAATQILSQLHESIIESDLKDKDKSIITEKMAVVSKCLSD 333
Query: 292 GVNSLLQLSGL 302
G + LQ+ L
Sbjct: 334 GADEYLQMLSL 344
>gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA]
gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei]
Length = 329
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 178/310 (57%), Gaps = 6/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + ++ F G +P++++ GPPG GKT+TIL + + L G S
Sbjct: 1 VEKYRPSVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 60
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI VR +IK FA+ K K++ILDEAD MT AQ A+R
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMR 120
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R++ L + +L+K ++I + EN++ T
Sbjct: 121 RIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTK 180
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
+G+E+++ +GDMR+ LN LQ ++ + + D P P +K +L + +
Sbjct: 181 NGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPTEIKFILEHLTKS 240
Query: 236 NMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+K+SY+II L + GY+ +DI+ ++ T D P+ +++ G + R + G
Sbjct: 241 TIKESYEIITKLQEDKGYSIKDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASGTT 300
Query: 295 SLLQLSGLLA 304
+ LS L++
Sbjct: 301 EQITLSSLIS 310
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 185/325 (56%), Gaps = 8/325 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ S ++ +ED + + + ++P+++ GPPG GKT+TI +AR L G S+
Sbjct: 23 VEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYGESY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
VLELNAS+DRGID VR +IK FA +K++ILDEADSMT+ AQ ALRR +
Sbjct: 83 SRMVLELNASDDRGIDVVREQIKTFASSMFMFSNYPYKLIILDEADSMTNPAQTALRRVI 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TTRF + CN KI+ +QSRC R++ L + + ++ EI E E++ +D L
Sbjct: 143 EKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIECESLKVNDDAL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFG---HVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
+I+ ++GDMR+ LN LQS + + +++ +P P +K++L+ + +
Sbjct: 203 NSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTGQPLPTDIKKILMWSLNQSY 262
Query: 238 KDSYKIIHHLYK-LGYAPEDIIGNI-FRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ I L K G + DII I F K +I P ++++E+ ++ +S G +
Sbjct: 263 IEALNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKELSDIEYNLSFGASE 322
Query: 296 LLQLSGLLARLCIV---GSKNKKTD 317
LQL +L ++ KN K D
Sbjct: 323 KLQLGSMLGSFQVIRDEAVKNNKDD 347
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 181/308 (58%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+ G +D V+ ++ F+ G +P+++ GPPG GKT+TI+ LAR L G ++
Sbjct: 9 VEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYGKNY 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRGID VR++IK FA + G K++ILDEAD+M++ AQ ALRR +
Sbjct: 69 RNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSG-FKLIILDEADAMSNAAQNALRRVI 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N S K+ + SRC R++ L D+ L +V + + E + +D
Sbjct: 128 EKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAEGLKIASDAR 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGF---GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
++++ ++GDMR+ALN LQ+ +T + V++ P P +V +L + +
Sbjct: 188 QSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSVMTVLDAIMSNDW 247
Query: 238 KDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
D+Y + + K G A D++ V ++ +++++Q +G++ IS+G +
Sbjct: 248 TDAYATMTKIRKTEGLALVDLMSGFVSVLDKYELKPRTRMAVLQGLGDIEYSISKGGSDK 307
Query: 297 LQLSGLLA 304
+Q + ++
Sbjct: 308 IQCTAVIG 315
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 181/325 (55%), Gaps = 22/325 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+T D+ ++ LK ++G +P+++ GPPG GKT+T L LAR L GP +
Sbjct: 31 VEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFGPDT 90
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV---------TLPPGRHKIVILDEADSMTD 110
++D +LELNAS++RGI VR KIK FAQ V PP K++ILDEAD+MT
Sbjct: 91 YRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPP--FKVIILDEADTMTP 148
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF L CN +IIEP+ SRCA R++ L +L ++ I +
Sbjct: 149 DAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISRE 208
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF--GHVTAEYVFKVCDEPHPLAVKEM 228
E++ DGL+AIV + GDMR+A+ +QS + VT E + + + P VKE
Sbjct: 209 EDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGK-IPAEVKEA 267
Query: 229 LLNCVE-GNMKDSYKIIHHLYKLGYAPEDIIGNI--FRVAKTLDIPEPLKLSIIQEIGNV 285
L + ++ G+ + GY ++ ++ VA T IP+ K I + I
Sbjct: 268 LWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTT-IPDHKKADICRRIAEA 326
Query: 286 HLRISEGVN---SLLQLSGLLARLC 307
+ +G N LL L+ + AR C
Sbjct: 327 DRCLIDGCNEELQLLDLASVAARSC 351
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 180/310 (58%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D++ +E+ ++ + F +P+++ GPPG GKT+TIL AR L +
Sbjct: 14 VEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTSAQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLE+NAS+DRGI+ VR +I FA G K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FNSMVLEMNASDDRGINIVRGQILSFASTGTMYKSG-FKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q+L ++ I ++EN++ T DG
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ + GDMR+ LN LQST FG VT E V+ P P+ +K N V +
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTWLAFGAVTEENVYSCVGHPLPIDIK----NIVNWLFNE 248
Query: 240 SY-----KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
SY KI K G A +DI+ + ++ P+ + + +I ++ + R+S G +
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTELHLFINKIEFPDSILIDLIIKLAEIEKRVSIGCS 308
Query: 295 SLLQLSGLLA 304
+QL+ L++
Sbjct: 309 EAVQLNALVS 318
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 176/309 (56%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L +G+ P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA + K P +KI++LDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ LT+ + S+++ IC++E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
I +GL + +QGD+R+A+ LQS FG ++++ + V V+ +L
Sbjct: 192 IYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALLKA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C GN + K +++ GY ++ +F + + DI + K I +++G +
Sbjct: 252 CRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLV 311
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 312 DGADEYLQL 320
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 123/318 (38%), Positives = 179/318 (56%), Gaps = 18/318 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L G
Sbjct: 42 VEKYRPKCMDEVAFQEEVVAVLKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFGTEL 101
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 102 FRQRVLELNASDERGIQVIREKVKRFAQLTVSGSRSDGKLCPP--FKIVILDEADSMTSA 159
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEPI SRC+ R+ L+D +++E+ EKE
Sbjct: 160 AQAALRRTMEKESKTTRFCLICNYISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVAEKE 219
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEM--- 228
N++ +++ + +V ++GD+R+A+ LQS G E K+ E + +EM
Sbjct: 220 NVAVSSEAISYLVHVSEGDLRKAITLLQSATRLMGG--KEVTEKIVTEIAGVIPREMLDG 277
Query: 229 -LLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQEIGNVH 286
L +C G+ + + +L GYA +I + V + D+ + K I +++ V
Sbjct: 278 VLASCQSGSFEKLEAVTKNLIDEGYAATQLINQLHDVIVEREDLSDKQKSIIAEKLAEVD 337
Query: 287 LRISEGVNSLLQLSGLLA 304
+ +G + LQL+ L A
Sbjct: 338 KCLVDGSDEFLQLTSLCA 355
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 180/311 (57%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F S +P+++ GPPG GKT+TIL AR L P
Sbjct: 14 VEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q++ ++ +I + E + T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDAEAVQITEDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
A++ A+GDMR+ LN LQST F V + V+ P ++++L + GN ++
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAFDKVNEDNVYTCVGYPLRQDIEQILKALLSGNSVE 252
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
DS+K + + Y G A EDI+ + L++P + +I ++ + R+++G
Sbjct: 253 DSFKTVENAKYARGLALEDILTELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEPA 312
Query: 298 QLSGLLARLCI 308
Q + L+A I
Sbjct: 313 QTAALVAAFFI 323
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 179/315 (56%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SGN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N +II+PI SRCA+ R++ + + ++ I + E + D
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKED 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
++ I ++GDMR+A+N LQ V V P + E+ + G+ +
Sbjct: 184 AIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVELFNLALSGDYL 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ +Y G A D I R + + + K + + + +V R+++G + +
Sbjct: 244 KAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEI 303
Query: 298 QLSGLLARLCIVGSK 312
QLS LA+L +G K
Sbjct: 304 QLSYFLAKLGSIGKK 318
>gi|429962476|gb|ELA42020.1| hypothetical protein VICG_00867 [Vittaforma corneae ATCC 50505]
Length = 292
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 184/303 (60%), Gaps = 21/303 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
++KY P+T D++GN+D ++ +K + P+++ +GPPG GKTT LA L+ PSF
Sbjct: 4 VDKYSPKTIEDVLGNQDVIQVIK--DIKDDFPHLLFTGPPGTGKTT----LAH-LMRPSF 56
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGIDT+R +K F + V K+VILDE D +T AQQALRR M
Sbjct: 57 E--TLELNASDERGIDTIRTTLKSFCHKNVP-----KKLVILDECDHLTAQAQQALRRLM 109
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI T+F L CN +IIEPIQSRCA+L++ ++ ++ ++ EIC+ ENI T+DGL
Sbjct: 110 EI--TDTKFILICNQISQIIEPIQSRCAVLKFERIPSSEFKHRLREICDAENIKITDDGL 167
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ + GD+R +L LQ + V ++++K+ P+ ++ ++ + M+ +
Sbjct: 168 DAVMNVSYGDIRASLGCLQGISSVKRVVDDDFIYKLNGIPNVKILESIISSIETKEMEKA 227
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+ H L+ L + DI+ +F++AK D E LK+ IG LRI+EGVNS +Q
Sbjct: 228 LETFHSLWNLKFESTDILDGLFKIAKNQDNFELLKI-----IGKYQLRINEGVNSKVQFY 282
Query: 301 GLL 303
+
Sbjct: 283 SMF 285
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 175/311 (56%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+T +D+V ++D + L F +P++++ GPPG GKT+T+L LA+ + GP +
Sbjct: 25 IEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVLALAKKVFGPKY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK------VTLPPGRHKIVILDEADSMTDGAQQ 114
K LELNAS+DRGID V+ +IK FA + V L K++ILDEAD+MT AQ
Sbjct: 85 KSMTLELNASDDRGIDVVKKEIKDFAGTRTIFGLIVLLCRTGFKMIILDEADNMTQTAQF 144
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR +E Y+ RF L CN KII +QSRC R++ LT A + + I +KENI
Sbjct: 145 ALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLTSADIQGNLERILDKENIK 204
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
T D L+A+ + GDMR+ LN LQS+ VT E +++ +P+P V + +
Sbjct: 205 ATPDALKAVEKISGGDMRKCLNILQSSSMASKEVTVESIYECTGDPNPSDVMWITHSLCN 264
Query: 235 GNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ +D Y KI + G A DI+ + D+P +++ + ++ R++
Sbjct: 265 DSFEDCYHKIFEIQREKGLALIDIVRAVHEQIIKHDLPSVPFCRLLESLSDLEYRLTAAT 324
Query: 294 NSLLQLSGLLA 304
N +QL +
Sbjct: 325 NEKIQLGSFVG 335
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 180/312 (57%), Gaps = 16/312 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T SD+V + V L+ S ++PN++ GPPG GKT+TIL AR L G +
Sbjct: 33 VEKYRPRTVSDVVEQSEAVSVLQQCISGADLPNLLFYGPPGTGKTSTILAAARQLFGDYY 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQQ 114
+D +LELNAS++RGI +R+K+K FAQ T P G+ KIVILDEADSMT AQ
Sbjct: 93 RDRILELNASDERGIQVIRDKVKTFAQLTASGTRPDGKPCPPFKIVILDEADSMTHAAQA 152
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +IIEP+ SRC R+ L +A +L ++ IC KEN+
Sbjct: 153 ALRRTMEKESRSTRFCLICNYVSRIIEPLTSRCTKFRFKPLNEAMILERLSFICGKENVE 212
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH---VTAEYVFKVCDEPHPLAVKEMLLN 231
++ L A+V T+ GDMR+A+ +LQS G ++ + V +V +K+ L
Sbjct: 213 CSDKTLAALVETSGGDMRRAITSLQSCAKLKGSGVPISIDDVLEVTGVVPERWLKKFLDV 272
Query: 232 CVEGNMKDSYKIIHHLYKL---GYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHL 287
C KD K+ L ++ YA I+ + + + + K I Q++G V
Sbjct: 273 C---KTKDQNKLQAFLKEMMFEAYAASQILEQLNQYIVNFEGFTDQQKAIIGQKLGVVSF 329
Query: 288 RISEGVNSLLQL 299
++ +G + +QL
Sbjct: 330 KLQDGGSEFIQL 341
>gi|448351100|ref|ZP_21539909.1| replication factor C [Natrialba taiwanensis DSM 12281]
gi|445634784|gb|ELY87958.1| replication factor C [Natrialba taiwanensis DSM 12281]
Length = 1031
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 114/282 (40%), Positives = 170/282 (60%), Gaps = 10/282 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+G++P ++ TT +AR + +++ LELNAS+ RGID VR++IK FA
Sbjct: 756 AGDIPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFA- 807
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ + H+I+ LDEAD++T AQ ALRRTME +SN TRF L+CN S +II+PIQSRC
Sbjct: 808 -RASFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 866
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ +LT+ + ++V EI E E I T+DG++A+V+ A GDMR+A+N LQ+
Sbjct: 867 AVFRFTELTEDAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVMGET 926
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAK 266
V E VF + P V+EM+ + + G+ + + L G A D+I + R A
Sbjct: 927 VDEETVFAITATARPEEVEEMVDHAIAGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAW 986
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
T DIPE + +++ +G V RI+EG N LQL +LA L +
Sbjct: 987 TFDIPEQATVRLLERLGEVDFRITEGANERLQLEAMLASLAL 1028
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 34/148 (22%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT------------- 47
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GK T
Sbjct: 22 IEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKCVTGETPVLTNEGITP 81
Query: 48 ILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ-------------KVTLPP 94
I + + G D LE+ ND G +F+++ ++T+ P
Sbjct: 82 ISAVVGAIDGFDTPDDDLEILTYNDDGSFEYAAPSHVFSKEAANLISIETRDGNEITVTP 141
Query: 95 GRHKIVILDE-------ADSMTDGAQQA 115
HK+++ DE A+S+TDG + A
Sbjct: 142 -EHKLLVADETGLSWKQAESITDGERIA 168
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 179/314 (57%), Gaps = 13/314 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+ G+E V LK ++ P+++ GPPG GKT+TIL +AR + GPS+
Sbjct: 32 VEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYGPSY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG-------RHKIVILDEADSMTDGAQ 113
K VLELNAS+DRGID VR++IK+FA + G K+VILDEAD+MT+ AQ
Sbjct: 92 KSMVLELNASDDRGIDVVRDQIKVFASSRQIFQRGGEENARSNFKLVILDEADAMTNVAQ 151
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRR +E Y+ TRF + N + K+ + SRC R++ L +A + +++++ + E +
Sbjct: 152 NALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQVIDAEKV 211
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVKEM 228
D A++ ++GDMR+ALN LQ+ H G H +T V+ P P + +
Sbjct: 212 KIAPDAKAALLELSKGDMRRALNVLQACHTGLEHPGKDTITLSQVYLCVGSPDPADIDTI 271
Query: 229 LLNCVEGNMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
L + + + +Y + L + G A DI+ + L++ E K++++ ++ ++
Sbjct: 272 LTSILNDDWTTAYDTVSTLKRERGLALVDILEKLSAELMALNLKEKTKIALLSKLADIEY 331
Query: 288 RISEGVNSLLQLSG 301
R++ G + +Q S
Sbjct: 332 RLANGGSEKIQTSA 345
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 183/315 (58%), Gaps = 22/315 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+ ++ V LK SG++P+++ GPPG GKT+TIL LAR L G F
Sbjct: 11 VEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLYGNEF 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS++RGI +R K+K F+Q R++IVILDEADSMT AQ ALRRTM
Sbjct: 71 RQKVLELNASDERGISVIREKVKNFSQMTANQGKIRYRIVILDEADSMTRDAQTALRRTM 130
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT-NDG 179
E Y+ TTRF L CN KII P+ SRC+ R+ L L++K+ EIC KEN++ +D
Sbjct: 131 EKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICTKENVNFRGSDD 190
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFK---------VCDEPHPLAVKEMLL 230
L+ ++ A+GDMR+A+ LQS H ++AE + + + D E +L
Sbjct: 191 LKFLIELAEGDMRRAVTLLQSAH----RISAEKITREDIRNIAGVIPDNVVEQIYTEPVL 246
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRI 289
+ + M+D + GY+ + ++ + + + I + + ++++++ V R+
Sbjct: 247 DRLTKRMRD-------FVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVEHRM 299
Query: 290 SEGVNSLLQLSGLLA 304
+G + L+ L L A
Sbjct: 300 KDGASELISLQDLAA 314
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 182/315 (57%), Gaps = 3/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SGN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGI+ +R ++K FA+ P K+VILDEAD+MT AQQALRR M
Sbjct: 67 RENTLELNASDERGINVIRERVKEFARTAPIKAP--FKLVILDEADNMTSDAQQALRRIM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIY+ TRF L N +II+PI SRCA+ R++ + + + ++ I ++E I D L
Sbjct: 125 EIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEVGEDAL 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKD 239
+ I ++GDMR+A+N LQ V A V P + E+ + G+ +K
Sbjct: 185 DLIYELSEGDMRKAINLLQVAAATNKVVDANAVAAAAAAVKPSDILELFNLALGGDYLKA 244
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
K+ +Y G A D I R + + + LK I + + +V R+++G + +Q+
Sbjct: 245 REKLRELMYIKGVAGVDFIRAFQRELIRMPLDDDLKAEIAELLADVDYRLTQGADEEIQM 304
Query: 300 SGLLARLCIVGSKNK 314
+ LLA+L +G + K
Sbjct: 305 AYLLAKLGSIGKRAK 319
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 182/311 (58%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+ G + V ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 17 VEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGKNY 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGI+ VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 77 SNMVLELNASDDRGIEVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N S K+ + SRC R+ L + ++ + ENI ++D
Sbjct: 136 EKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIHENIKISDDAK 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFG-----HVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
+A++ +QGDMR+ LN LQ++ + A+ +++ C P P +K +L + +E
Sbjct: 196 DALITLSQGDMRRVLNVLQASKATLDDPANEEIHADVIYECCGAPRPADLKTILKSILED 255
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPL-KLSIIQEIGNVHLRISEGV 293
+ +Y + L G A D+I I ++ + ++ L ++S++ ++G++ IS+G
Sbjct: 256 DWSSAYYTLTKLRSTKGLALIDLIEGIIKLLEDYELKNELTRISLLSKLGDIEYSISKGG 315
Query: 294 NSLLQLSGLLA 304
N +Q S ++
Sbjct: 316 NDKIQSSAVIG 326
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 178/310 (57%), Gaps = 6/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + ++ F G +P++++ GPPG GKT+TIL + + L G S
Sbjct: 16 VEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI VR +IK FA+ K K++ILDEAD MT AQ A+R
Sbjct: 76 SSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMR 135
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R++ L + +L+K ++I + EN++ T
Sbjct: 136 RIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTK 195
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
+G+E+++ +GDMR+ LN LQ ++ + + D P P +K +L + +
Sbjct: 196 NGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKS 255
Query: 236 NMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+K+SY+II L + GY+ +DI+ ++ T D P+ +++ G + R + G
Sbjct: 256 TIKESYEIITKLQEDKGYSIKDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASGAT 315
Query: 295 SLLQLSGLLA 304
+ LS L++
Sbjct: 316 EQITLSSLIS 325
>gi|448366855|ref|ZP_21554886.1| replication factor C [Natrialba aegyptia DSM 13077]
gi|445653764|gb|ELZ06624.1| replication factor C [Natrialba aegyptia DSM 13077]
Length = 1030
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 114/282 (40%), Positives = 170/282 (60%), Gaps = 10/282 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+G++P ++ TT +AR + +++ LELNAS+ RGID VR++IK FA
Sbjct: 755 AGDIPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFA- 806
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ + H+I+ LDEAD++T AQ ALRRTME +SN TRF L+CN S +II+PIQSRC
Sbjct: 807 -RASFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 865
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ +LT+ + ++V EI E E I T+DG++A+V+ A GDMR+A+N LQ+
Sbjct: 866 AVFRFTELTEDAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVMGET 925
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAK 266
V E VF + P V+EM+ + + G+ + + L G A D+I + R A
Sbjct: 926 VDEETVFAITATARPEEVEEMVDHAIAGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAW 985
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
T DIPE + +++ +G V RI+EG N LQL +LA L +
Sbjct: 986 TFDIPERATVRLLERLGEVDFRITEGANERLQLEAMLASLAL 1027
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 34/148 (22%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT------------- 47
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GK T
Sbjct: 22 IEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKCVTGETPVLTNKGITP 81
Query: 48 ILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ-------------KVTLPP 94
I + + G D LE+ ND G +F+++ ++T+ P
Sbjct: 82 ISAVVGAIDGFDTPDDDLEILTYNDDGSFEYAAPSHVFSKEAANLISIETRDGNEITVTP 141
Query: 95 GRHKIVILDE-------ADSMTDGAQQA 115
HK+++ DE A+S+TDG + A
Sbjct: 142 -EHKLLVADETGLSWKQAESITDGERIA 168
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 183/318 (57%), Gaps = 12/318 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP +D++ +E+ + + F +P+++ GPPG GKT+TIL AR L P S
Sbjct: 12 VEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKPQS 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI+ VR +I FA + T+ G +K++ILDEAD+MT+ AQ ALRR
Sbjct: 72 FGSMVLELNASDDRGINIVRGQILDFASTR-TIFKGGYKLIILDEADAMTNDAQNALRRI 130
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII IQSRC R+ L+ Q+L ++ + E E I T+DG
Sbjct: 131 IEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEHVVEAEGIDVTDDG 190
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-----E 234
+A++ A GDMR+ LN LQST + VT V+ HPL KE + N + E
Sbjct: 191 KKALMTLAGGDMRKVLNVLQSTWMAYKKVTEVNVYNCVG--HPL--KEDINNIIFWLLNE 246
Query: 235 GNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ K Y+ I L + G A EDI+ I V L+IP + ++ + ++ R+++G
Sbjct: 247 ESFKACYEKIQQLKTQKGLALEDILTEIHLVVNRLEIPPRVSSQLLINLASIEERLADGC 306
Query: 294 NSLLQLSGLLARLCIVGS 311
Q++ L+A V S
Sbjct: 307 VEKPQITALIAAFSKVRS 324
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 170/307 (55%), Gaps = 3/307 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + I+ ++ L+ F ++ +P+++ GPPG GKT+TI+ LA L G SF
Sbjct: 26 VEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTSTIMALAARLYGASF 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ VLELNAS+DRGID VR +IK FA + + K+VILDEAD+MT AQ ALRR
Sbjct: 86 RNNVLELNASDDRGIDVVRGQIKAFASTRNVFSTQKDTFKLVILDEADAMTQAAQAALRR 145
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME Y+ RF + CN KII IQSRC R++ L Q+ ++ + E+
Sbjct: 146 VMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVERQIDSVIAAEHCQIDAK 205
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
AI+ QGDMR+ALN LQ+ H + + V+ PHP ++ +E
Sbjct: 206 AKHAILQLCQGDMRRALNILQACHAANDMIDEDSVYLCTGHPHPQDIETAFQAMLEQEFT 265
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+++ I L + G A D++ + + +L++P ++ ++ + + R+S + +
Sbjct: 266 TAFQTIQTLRVEKGLALTDLLTGMHALVLSLELPPHARVFLLDHMAQIEYRLSTNASERV 325
Query: 298 QLSGLLA 304
QLS LLA
Sbjct: 326 QLSALLA 332
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 177/316 (56%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V LK ++PN++ GPPG GKT+TIL +R L GP
Sbjct: 40 VEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLFYGPPGTGKTSTILAASRELYGPEL 99
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V PP KI+ILDEADSMT
Sbjct: 100 FRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPP--FKIIILDEADSMTSA 157
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L D +++ ICEKE
Sbjct: 158 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKE 217
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ TN+ + +V ++GD+R+A+ LQS +T E V ++ + +L
Sbjct: 218 NVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIVTEIAGVVPKETLDSVL 277
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLR 288
+ C G+ + + L G+A ++ + V + D+ + K I +++ +V
Sbjct: 278 VVCQSGSFEKLENFVKDLINNGHAATQLVNQLHDVILERGDLTDKQKAFITEKLADVDKC 337
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQ+ GL A
Sbjct: 338 LTDGADEYLQMLGLFA 353
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 2/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+ +++ ++ +K P+++ GPPG GKT+TIL +AR + G S
Sbjct: 17 VEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILAVARQMYGASL 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGI VR +I FA K T+ + K+VILDE D+MT AQ ALRR +
Sbjct: 77 RSMVLELNASDDRGIGIVREQIVDFASTK-TMFSNKFKLVILDECDAMTKDAQAALRRVI 135
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF L CN KII +QSRC R+ L D+ + S++ + + E ++ + GL
Sbjct: 136 EKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVIDSERVNMGDGGL 195
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V GDMR+ LN LQ+TH V+ E V++ P P ++ ++ + D
Sbjct: 196 DAVVTLGAGDMRRTLNILQATHMSADVVSEEAVYQCTGNPLPKDIEAIVQALFNEDFVDV 255
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + + G A DI+ + +++P +++ ++ + + R++ G + LQL
Sbjct: 256 FAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLVDALADTEHRLAFGTSERLQL 315
Query: 300 SGLLARLCI 308
L+ +
Sbjct: 316 GALVGAFSV 324
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 185/315 (58%), Gaps = 12/315 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T SD++ +E+ + + F +P+++ GPPG GKT+TIL AR L P S
Sbjct: 12 VEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQLYKPQS 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI+ VRN+I FA + T+ G +K++ILDEAD+MT+ AQ ALRR
Sbjct: 72 FNQMVLELNASDDRGINIVRNQILNFASTR-TIFSGGYKLIILDEADAMTNDAQNALRRI 130
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q+L ++ + + E I ++DG
Sbjct: 131 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDAEGIKVSDDG 190
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVK-----EMLLNCVE 234
+A++ A GDMR+ LN LQST + VT + V+ HPL + LLN VE
Sbjct: 191 KKALMTLAGGDMRKVLNVLQSTWMAYKDVTEDNVYTCVG--HPLKIDITNIVNWLLN-VE 247
Query: 235 GNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ K++++ I L G A EDI+ I +++P + ++ ++ V R++ G
Sbjct: 248 -SFKETFEKIQELKTNKGLALEDILTEIHLYVHRMELPPRVMSQLLIKMAAVEERLAAGC 306
Query: 294 NSLLQLSGLLARLCI 308
Q++ L+A I
Sbjct: 307 VEKPQMASLIAAFQI 321
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 179/310 (57%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D++ +E+ ++ + F +P+++ GPPG GKT+TIL AR L P+
Sbjct: 14 VEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPAQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLE+NAS+DRGI VR +I FA G K++ILDEAD+MT AQ ALRR
Sbjct: 74 FNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSG-FKLIILDEADAMTKDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN +II +QSRC R+ L+ Q+L ++ I ++EN++ + DG
Sbjct: 133 IEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTIIKEENLNVSEDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ + GDMR+ LN LQST F VT E V+ P P+ +K N + + +
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIK----NIINWLLNE 248
Query: 240 SY-----KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
SY KI K G A +DI+ + ++ P+ + + ++ ++ + R+S G +
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSILIDLVIKLAEIEKRVSIGCS 308
Query: 295 SLLQLSGLLA 304
+QL+ L++
Sbjct: 309 EAVQLNALVS 318
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 183/322 (56%), Gaps = 10/322 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D V+ + + +P++++ GPPG GKT+TIL +AR + G +
Sbjct: 39 VEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYGSQY 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS++RGI VR +I+ FA +L G K+V+LDEAD+MT AQ ALR
Sbjct: 99 GNMILELNASDERGIGVVRQQIQDFASAH-SLSFGAKPAVKLVLLDEADAMTKDAQFALR 157
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + + ++ I + E +
Sbjct: 158 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLRHIIKSEGLDVDE 217
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR++LN LQSTH +T E V+ P P ++++ +
Sbjct: 218 GGLSALVRLSNGDMRKSLNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPF 277
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
S+K I + + G A DII + + +P +++ +I ++ ++ R++ N
Sbjct: 278 STSFKHIADMKMRKGLALIDIIREVTMFVFKIKMPSSVRVKLINDLADIEYRLTFACNDK 337
Query: 297 LQLSGLL-----ARLCIVGSKN 313
LQL L+ AR +V + +
Sbjct: 338 LQLGALISTFTTARTAMVAAAD 359
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 178/316 (56%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ + PP KIVILDEADSMT
Sbjct: 99 FRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGEVCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D +++++ EKE
Sbjct: 157 AQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEML 229
N+ T++ + +V ++GD+R+A+ LQS G +T + V ++ + +L
Sbjct: 217 NVKITSEAVSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLL 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + + +L GYA +I + V ++ D + K I++++ V
Sbjct: 277 SACWSGSFEKLETVAKNLISEGYAVAQLISQLHDLVVESEDFSDKQKSIIVEKLAEVDKC 336
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 337 LADGADEYLQLISLCA 352
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 176/311 (56%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+V +E+ + L +P+++ GPPG GKT+ IL AR++ P
Sbjct: 15 VEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMFTPKQ 74
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH-----KIVILDEADSMTDGAQQ 114
VLELNAS+DRGI VR++I FAQ K TL + K++ILDEAD+MT AQ
Sbjct: 75 LASMVLELNASDDRGIGIVRDQIMNFAQTK-TLHVDENGKSHIKLIILDEADAMTKDAQN 133
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR +E ++ RF + CN KII +QSRC R+ L + Q+L ++ I + E++
Sbjct: 134 ALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHIAKSESLK 193
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
T DG A++ A GDMR+ LN LQST F + E V+ +P P +++++ +
Sbjct: 194 LTEDGERALMKLAGGDMRRVLNILQSTAMAFPKIDEESVYLCVGQPLPSVIEDIVRILLN 253
Query: 235 GNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ +D++ I + L +A DI+ ++ LDIP + +I ++ + R++ G
Sbjct: 254 DSFEDAFTKIEGIRCLHAFALSDILASMQDAVYQLDIPSDVTCLLIAQMAQIEYRLARGC 313
Query: 294 NSLLQLSGLLA 304
+QL+ L+A
Sbjct: 314 TDRMQLAALIA 324
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 183/322 (56%), Gaps = 10/322 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ +D+ + D V+ + + +P++++ GPPG GKT+TIL +AR + G +
Sbjct: 38 VEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYGSQY 97
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
+ +LELNAS++RGI VR +I+ FA +L G K+V+LDEAD+MT AQ ALR
Sbjct: 98 GNMILELNASDERGIGVVRQQIQDFASAH-SLSFGAKPAVKLVLLDEADAMTKDAQFALR 156
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ +TRFAL CN+ KII +QSRC R+ L + + ++ I + E +
Sbjct: 157 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLQHIIKSEGLDVDE 216
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
GL A+V + GDMR+ALN LQSTH +T E V+ P P ++++ +
Sbjct: 217 GGLTALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPF 276
Query: 238 KDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
S+K I + + G A DII + + +P +++ +I ++ ++ R++ N
Sbjct: 277 STSFKYISDMKMRKGLALIDIIREVTMFVFKIKMPCNVRVKLINDLADIEYRLTFACNDK 336
Query: 297 LQLSGLL-----ARLCIVGSKN 313
LQL L+ AR +V + +
Sbjct: 337 LQLGALISTFTSARTAMVAAAD 358
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 179/310 (57%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D++ +E+ ++ + F +P+++ GPPG GKT+TIL AR L P+
Sbjct: 14 VEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPAQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLE+NAS+DRGI VR +I FA G K++ILDEAD+MT AQ ALRR
Sbjct: 74 FNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSG-FKLIILDEADAMTKDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN +II +QSRC R+ L+ Q+L ++ I ++EN++ + DG
Sbjct: 133 IEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDAIIKEENLNVSEDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ + GDMR+ LN LQST F VT E V+ P P+ +K N + + +
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIK----NIINWLLNE 248
Query: 240 SY-----KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
SY KI K G A +DI+ + ++ P+ + + ++ ++ + R+S G +
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSVLIDLVIKLAEIEKRVSIGCS 308
Query: 295 SLLQLSGLLA 304
+QL+ L++
Sbjct: 309 EAVQLNALVS 318
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 182/317 (57%), Gaps = 6/317 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F +GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N +II+PI SRCA+ R++ + + + ++ I + E + D
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELRED 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
+ I ++GDMR+A+N LQ V A V P + E+ + G+ +
Sbjct: 184 AINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDFV 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ +Y G A D I R + I + +K I + + +V R+++G + +
Sbjct: 244 KAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEEI 303
Query: 298 QLSGLLARLCIVGSKNK 314
QL+ LL +L +G + K
Sbjct: 304 QLTYLLTKLGAIGRRVK 320
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP ++V +E V+ L F + +P+++ GPPG GKTTT+L AR + P+
Sbjct: 14 VEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYSPAR 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK-----VTLPPGRH---KIVILDEADSMTDG 111
VLELNAS++RGID VRN I FAQ K T K+VILDEAD+MT
Sbjct: 74 MSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQVPFKMVILDEADAMTKD 133
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E Y++ RF + CN II IQSRC R+ L ++ ++ I E
Sbjct: 134 AQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQKLIVPRLDFIVNSE 193
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
NI T+DG +A++ + GDMR +N LQST F V+ V++ +P P +K+++
Sbjct: 194 NIKMTSDGRQALLTVSNGDMRTVINTLQSTAMSFDTVSESTVYQCIGQPTPKEMKQVVSI 253
Query: 232 CVEGNMKDSYKIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + K +I L+ GYA +D+I ++ TLDIP+ +I+ +G V ++
Sbjct: 254 LLNDSAKTCMNLIKTKLFDNGYALQDVITHLHDWVFTLDIPDEAMSAIVTGLGEVEQNLA 313
Query: 291 EGVNSLLQL 299
G ++ QL
Sbjct: 314 SGCSNETQL 322
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L +G+ P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR-------HKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA V P + +KI++LDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIVLDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC +E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICNEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
+ +GL + +QGD+R+A+ LQS+ FG H++++ + V V+ +L
Sbjct: 192 LHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVVPENVVEAILKA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C GN + K +++ GY ++ +F + + + K I +++G +
Sbjct: 252 CKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARICKKLGEADKCLV 311
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 312 DGADEYLQL 320
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 175/320 (54%), Gaps = 17/320 (5%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP I+ ++D + +K F+ G +P+++ GPPG GKT+TIL +++ L G
Sbjct: 10 EKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYGNYAN 69
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH----------KIVILDEADSMTDG 111
VLELNAS+DRGI+ VR+KIK FA+ P K++ILDEAD MT+
Sbjct: 70 VYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQMTNA 129
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
+Q ALRR MEIY+ RF L CN KII PIQSRC R++ L + L + +EI E
Sbjct: 130 SQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEIATNE 189
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD------EPHPLAV 225
I+ +GL A++ AQGDMR+ LN Q + V D P V
Sbjct: 190 GITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTPLEDEV 249
Query: 226 KEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
K + V+ + +II H+ +L GY+ +D++ ++++ +D P + + +I + +
Sbjct: 250 KSIFNALVQSTFSECIQIIRHVQELKGYSLQDLVTCLYKLIIKIDWPTIVIVQLIIRMAD 309
Query: 285 VHLRISEGVNSLLQLSGLLA 304
+ R++ G N +Q+ L++
Sbjct: 310 IEERLATGANENIQICALVS 329
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 16/312 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP +++V +E V+ L F + +P+++ GPPG GKTTT+L AR + PS
Sbjct: 14 VEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYHPSK 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ-----------QKVTLPPGRHKIVILDEADSM 108
VLELNAS++RGID VRN I FAQ K ++P K+VILDEAD+M
Sbjct: 74 MSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVP---FKLVILDEADAM 130
Query: 109 TDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC 168
T AQ ALRR +E Y++ RF + CN II IQSRC R+ L + ++ ++ I
Sbjct: 131 TKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPRLDFIV 190
Query: 169 EKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEM 228
+ E + T DG EA++ ++GDMR +N LQST F V+ V++ +P P +K++
Sbjct: 191 KSEGLQMTPDGREALLRVSKGDMRTVINTLQSTAMSFEVVSESTVYQCIGQPTPAEMKKV 250
Query: 229 LLNCVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
+ + K KI L++ GYA +D+I ++ +A ++DIP+ +II +G V
Sbjct: 251 VTLLLNQTAKTCMNKIKKSLFENGYALQDVITHLHDLAFSMDIPDSAMSAIIVGLGEVEE 310
Query: 288 RISEGVNSLLQL 299
+S G ++ QL
Sbjct: 311 NLSTGCSNETQL 322
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 178/311 (57%), Gaps = 7/311 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ ++ G E+ ++ LK +SG +PN++ GPPG GKTT+IL L+R L G FK
Sbjct: 20 EKYRPKKLDEVKGQEEVIKLLKSSLTSG-LPNLLFFGPPGSGKTTSILALSRELFGNCFK 78
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRT 119
D VLELNASN+RGID +R +K +A Q V+ G +K++ILDE+D++T AQ ALRR
Sbjct: 79 DRVLELNASNERGIDMIRTTLKNYAMQDVSHQDGIPDYKLIILDESDALTPDAQTALRRM 138
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME ++ TRF L CN +I+ PI SRC R+N L + + ICEKE T +
Sbjct: 139 MEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLTSICEKEKFDVTPEA 198
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++A+ ++GDMR A+ LQ G H VT + + V L + +++L C E +
Sbjct: 199 IKAVGKLSEGDMRYAIGLLQKLSQGVRHSVTPQDISNVAGVVPNLEISQIILICKEKTVF 258
Query: 239 DSY-KIIHHLYKLGYAPEDIIGNIFRV--AKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
D Y K++H + + YA + I+ I + T + E + + + EI + + + +
Sbjct: 259 DIYLKVLHLVVEENYAADSILSQIRDIFTQDTNGLTETQRCNFLLEIADTDAALIDRADP 318
Query: 296 LLQLSGLLARL 306
L +S LL L
Sbjct: 319 LFAISSLLGTL 329
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 183/309 (59%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+T D++ +ED + + F + P+++ GPPG GKT+TIL AR L P
Sbjct: 11 VEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYEPKE 70
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA + T+ + K++ILDEAD+MT AQ ALRR
Sbjct: 71 FSSMVLELNASDDRGIGIVRGEILNFASTR-TIFNKKFKLIILDEADAMTHDAQNALRRV 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII P+QSRC R+ L+ +Q++ ++ + + E++ T G
Sbjct: 130 IEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKTEDVPITPAG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGF---GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
+AIV A+GDMR++LN LQ+++ F G + V++ P + +++ + + +
Sbjct: 190 KQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIADIMTHLMNDD 249
Query: 237 MKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ +Y+ I + + A +DI+ + + D+ +K+ I+ ++G + R++ G +
Sbjct: 250 ITTAYRKILDIKTMKSLALQDIVHKVHQSIMEFDLKAKVKIFILSKLGQLEKRLAAGSSE 309
Query: 296 LLQLSGLLA 304
+QL L++
Sbjct: 310 NIQLGSLVS 318
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 178/311 (57%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F + +P+++ GPPG GKT+TIL AR L P+
Sbjct: 14 VEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSPAH 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ G K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII +QSRC R+ L+ Q+L ++ ++ ++EN++ T+DG
Sbjct: 133 IEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQEENVNVTDDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
A++ A+GDMR+ LN LQST F V + V+ P ++ ML + D
Sbjct: 193 KNALLTLAKGDMRKVLNVLQSTSMAFDIVNEDNVYMCVGYPLRSEIEHMLQTLLSAATFD 252
Query: 240 S-YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S + I K G A EDI+ + L++P + +I ++ V R+++G
Sbjct: 253 SAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKMAQVEERLTKGCTETA 312
Query: 298 QLSGLLARLCI 308
Q + L++ I
Sbjct: 313 QTAALVSAFFI 323
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ V + F +P+++ GPPG GKT+TIL AR L P+
Sbjct: 13 VEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYTPAQ 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ G K++ILDEAD+MT+ AQ ALRR
Sbjct: 73 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADAMTNDAQNALRRI 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII +QSRC R+ L+ Q+L ++ +I E E ++ T+DG
Sbjct: 132 IEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEAEAVTITDDG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG-NMK 238
+A++ A+GDMR+ LN LQST F V V+ P +++L + G + K
Sbjct: 192 KKALLTLAKGDMRKVLNVLQSTVMAFNEVNENNVYMCVGYPLKQDTEQILNALLSGESFK 251
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++K I + G A EDI+ + L++P + +I ++ + R+S+G
Sbjct: 252 AAFKTIEDAKSRRGLALEDILTELHLFVMRLELPMSVMNKLIIKLAQIEERLSKGCTEGA 311
Query: 298 QLSGLLARLCI 308
Q++ L++ I
Sbjct: 312 QIAALVSAFFI 322
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 182/324 (56%), Gaps = 14/324 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+ E+ V LK ++PN+++ GPPG GKT+TIL AR L G
Sbjct: 40 VEKYRPRTVDDVAFQEEVVAVLKKSLQGADLPNLLLYGPPGTGKTSTILAAARELFGADL 99
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
K VLELNAS++RGI VR+K+K F+Q T P GR KIVILDEADSMT+ AQ
Sbjct: 100 MKQRVLELNASDERGIQVVRDKVKTFSQLSASGTRPDGRPCPPFKIVILDEADSMTNPAQ 159
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
+LRRTME + TTRF L CN +IIEP+ SRCA R+ L+ L ++ I E E +
Sbjct: 160 ASLRRTMEKETKTTRFCLICNYISRIIEPLASRCAKFRFKPLSSDILQKRLRHIAEAEKV 219
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + + A++ T++GD+R+A+ LQS H G +T + + ++ V +++
Sbjct: 220 NAEDKAITALIDTSEGDLRKAITYLQSAHRLKGEDAITEKDILEITGVIPKDMVSQLIQT 279
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C + + K + L GY+ E +I I V D+ + K I ++I R++
Sbjct: 280 CYSDSYEKLEKSVKDLKAEGYSAEQVILQIHDEVLPREDLTDKQKSVIAEKIAVCDQRLA 339
Query: 291 EGVNSLLQL----SGLLARLCIVG 310
+G + LQL S ++ + C G
Sbjct: 340 DGGDEFLQLMDLTSVMMQQFCHPG 363
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 176/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVSVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +N+G+ +V ++GD+R+A+ LQS G VT + + P + +
Sbjct: 219 NVIISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTENVITDIAGVIPPETINGIF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G+A ++ + V + D+ + K I +++ V
Sbjct: 279 AACQGGSFDKLEGVVKDLIDEGHAATQVVNQLHDVVVENDDLSDKQKSIITEKLAEVDKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLLSLCA 354
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 9/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L + ++P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ------QKVTLPPGRHKIVILDEADSMTDGAQ 113
+K VLELNAS+DRGI+ VR KIK FA +K P +KI+ILDEADSMT+ AQ
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQ 131
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E +
Sbjct: 132 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGL 191
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLNC 232
S L + + GD+R+A+ LQS FG +++ + V VK +L +C
Sbjct: 192 SLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASC 251
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQEIGNVHLRISE 291
G + K ++++ GY +I V DIP+ K I +++G + +
Sbjct: 252 KSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVD 311
Query: 292 GVNSLLQL 299
G + LQL
Sbjct: 312 GADEYLQL 319
>gi|448330403|ref|ZP_21519685.1| Replication factor C small subunit [Natrinema versiforme JCM 10478]
gi|445611784|gb|ELY65530.1| Replication factor C small subunit [Natrinema versiforme JCM 10478]
Length = 1030
Score = 203 bits (517), Expect = 8e-50, Method: Composition-based stats.
Identities = 112/282 (39%), Positives = 171/282 (60%), Gaps = 10/282 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+G+VP ++ TT +AR + +++ LELNAS+ RGID VR++IK FA+
Sbjct: 754 AGDVPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFAR 806
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ H+I+ LDEAD++T AQ ALRRTME +SN TRF L+CN S +II+PIQSRC
Sbjct: 807 S--SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 864
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ +LTD + ++V EI ++I+ T+DG++A+++ A GDMR+A+N LQ+
Sbjct: 865 AVFRFTELTDDAIEAQVREIAADQDIAVTDDGVDALIYAADGDMRKAINALQAAAVMGET 924
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAK 266
V E VF + P V+ M+ + +EG+ + + L + G A D+I + R A
Sbjct: 925 VDEETVFAITATARPEEVEAMVDHAIEGDFTAARAALEDLLTERGLAGGDVIDQLHRSAW 984
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
DIPE + +++ +G V RI+EG N LQL +LA L +
Sbjct: 985 EFDIPEQATVRLLERLGEVDFRITEGANERLQLEAMLASLAL 1026
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
IEKYRP+ +I G+ED V RL+ + ++P+++ +GP G GK T
Sbjct: 20 IEKYRPERLDEIKGHEDIVPRLQRYVEQDDLPHLMFAGPAGTGKCVT 66
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 174/309 (56%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L +G+ P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA Q+K P KI++LDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ I ++E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + L + + GD+R+A+ LQS FG +++E + V V+E+L
Sbjct: 192 LCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEELLKA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C GN + K +++ GY ++ +F + + D+ + K I +++G +
Sbjct: 252 CKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKCLV 311
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 312 DGADEYLQL 320
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I E+E
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAERE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +L
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVL 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++P+ K I +++ +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVSQLHDVVVENNLPDKQKSIITEKLAEADKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|443404662|ref|YP_007379001.1| replication factor C small subunit [Halovirus HVTV-1]
gi|441462173|gb|AGC34465.1| replication factor C small subunit [Halovirus HVTV-1]
Length = 327
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 182/310 (58%), Gaps = 4/310 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG-PS 59
+EKYRPQT DIVG+E+ V+R++ F + +VP+++ +G G+GKT I A+ G +
Sbjct: 9 VEKYRPQTLDDIVGHEEVVKRMRKFLDTEDVPHVVFAGKQGIGKTAIIQAFAKEKYGVDN 68
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+++ +LELNAS++RGIDT+R+K+K +A Q T+ ++KIV LDEAD +T AQ ALRR
Sbjct: 69 WRNNILELNASDERGIDTIRDKVKNYAVQG-TIGDHQYKIVFLDEADQLTKDAQTALRRI 127
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +++ TRF L+CN +II PIQSRCA + LTD L + E+E I+ +D
Sbjct: 128 MEDHADVTRFFLSCNYLSQIIGPIQSRCAPFSISPLTDDDLFQIGKNVAEEEGIAIEDDT 187
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L +V A GD R+ +N++Q+ G + A V V V++++ VEG++ D
Sbjct: 188 LTLMVNAADGDARKLINSMQAAVYE-GEIDANGVNVVVSTVDDALVEQIVNTAVEGDLDD 246
Query: 240 SYKIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ + + + K G + + RV K D+P +K ++ ++ + R G N +Q
Sbjct: 247 AMRQLDVEVLKEGVPANQLCDSFLRVIKKQDLPGDVKAKMLDKVAETNWRAMRGANPHVQ 306
Query: 299 LSGLLARLCI 308
LLA L +
Sbjct: 307 FHSLLADLHV 316
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 172/305 (56%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+V + D ++ F +P+++ GPPG GKT+TIL +AR + G +
Sbjct: 38 VEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGTEY 97
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS+DRGI+ VR +IK FA+ + G +K++ILDEAD MT AQ ALRR +
Sbjct: 98 RKQILELNASDDRGIEVVREQIKNFAETRTLFSKG-YKLIILDEADMMTTAAQSALRRVI 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KII IQSRC R++ L ++ +V + + E + T +G
Sbjct: 157 EQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDAEGVKITAEGK 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ ++GDMR+ALN LQ+ H + ++ P P ++ ++ + ++ + S
Sbjct: 217 QALLKLSKGDMRRALNVLQACHAAYELTGEAEIYNCTGNPQPADIETIVNSMLQDDFTTS 276
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y +I L G A D+I + +T++ ++ ++ + R+S G + LQ
Sbjct: 277 YNLISALKIDRGLALPDLINGAYEYIETINFKPHARIYLLDFLATTEHRLSTGGSEKLQF 336
Query: 300 SGLLA 304
+ LL
Sbjct: 337 TALLG 341
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F + +P+++ GPPG GKT+TIL AR L P+
Sbjct: 14 VEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSPAH 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ G K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII +QSRC R+ L+ Q++ ++ ++ E+EN++ T+DG
Sbjct: 133 IEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEEENVNITDDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ A+GDMR+ LN LQST F V + V+ P ++ +L + D
Sbjct: 193 KKALLTLAKGDMRKVLNVLQSTSMAFDVVNEDNVYMCVGYPLRSEIENVLQTLLSAATFD 252
Query: 240 S-YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
S + I K G A EDI+ + L++P + +I ++ + R+++G +
Sbjct: 253 SAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIIKLAEIEERLTKGCSETA 312
Query: 298 QLSGLLARLCI 308
Q + L++ I
Sbjct: 313 QTAALVSAFFI 323
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 180/311 (57%), Gaps = 9/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ E+ V L+ ++PN++ GPPG GKT+TIL AR L G +
Sbjct: 37 VEKYRPRTIDEVSYQEEVVAVLQKSLQGADLPNLLFYGPPGTGKTSTILAAARDLFGDIY 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRH----KIVILDEADSMTDGAQQ 114
KD VLELNAS++RGI VR K+K+F+Q+ V+ P G+ KIVILDEADSMT AQ
Sbjct: 97 KDRVLELNASDERGIQVVREKVKIFSQRTVSSVRPDGKQCPPFKIVILDEADSMTGAAQA 156
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME + +TRF L CN +IIEP+ SRC+ R+ L L+ ++ IC EN+S
Sbjct: 157 ALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLPREILVKRLEHICIAENMS 216
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHV--TAEYVFKVCDEPHPLAVKEMLLNC 232
+ + LE+++ ++GD+R+A+ LQS N T E ++++ ++ +L C
Sbjct: 217 CSEEVLESLIEASEGDLRRAITFLQSIANLNSEACPTIEDIYEITGRVPSCWIEGLLEKC 276
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
G+ I++ G++ ++ + R+ + ++ K I +++ R++E
Sbjct: 277 TSGSYDAMQSFINNFSAEGFSVSQLLNQLHERIVFSTELSSKQKNVICEKLAICDHRLAE 336
Query: 292 GVNSLLQLSGL 302
G + LQL L
Sbjct: 337 GADEQLQLLDL 347
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 178/319 (55%), Gaps = 10/319 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T ++V +ED + + SGN+P+++ GPPG GKTTTI A L G
Sbjct: 21 VEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGKDR 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK----VTLPPG----RHKIVILDEADSMTDG 111
+ VLE+NAS+DRGID VR +++ FA + P K+VILDEAD M+
Sbjct: 81 IRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASTPAAPTIAAFKLVILDEADQMSGD 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + + +LS++ + ++E
Sbjct: 141 AQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKFVAQEE 200
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ T++GL A + GD+R+ LN LQ++ G +T E V++V P P V+ ++ +
Sbjct: 201 GVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYRVTGNPTPADVRGIVED 260
Query: 232 CVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + S++ +H + + G + D++ + + +D+P+ K ++ ++ +V +
Sbjct: 261 MIAHDFAASWEKVHQIVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAA 320
Query: 291 EGVNSLLQLSGLLARLCIV 309
G +SG+L +V
Sbjct: 321 GGAKETTCISGILGAFQLV 339
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 168/322 (52%), Gaps = 17/322 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ E+ V L +GN+P+++ GPPG GKTTT L +A L GP +
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAIAHQLFGPEY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV---------TLPPGRHKIVILDEADSMTDG 111
K VLELNAS+DRGI+ VR KIK FA V PP KI+ILDEADSMT+
Sbjct: 72 KSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPP--FKIIILDEADSMTED 129
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L + + +++ IC++E
Sbjct: 130 AQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEE 189
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ +D L + ++GD+R+A+ LQS +G + P V + L
Sbjct: 190 GVHLDSDALTMLSSISEGDLRRAITYLQSAARLYGSSISSNNLISVSGIVPKEVVQSLYQ 249
Query: 232 -CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G + K + + G+ I ++ V + DI + K I Q + +
Sbjct: 250 ACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARISQRLAEADKCL 309
Query: 290 SEGVNSLLQL----SGLLARLC 307
+G + LQL S + LC
Sbjct: 310 IDGADEYLQLLDVASNAMRSLC 331
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 182/316 (57%), Gaps = 17/316 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+T S++ + V L + N+P++I GPPG GKT+ L LAR L G
Sbjct: 18 VEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALALARQLFGKDG 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT-----------LPPGRHKIVILDEADSM 108
K+ +LELNAS+DRGID VR KIK +A+ ++ +PP KIVILDEAD M
Sbjct: 78 LKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPMPPW--KIVILDEADMM 135
Query: 109 TDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC 168
T AQ ALRR +E YS TRF CN KII+P+ SRC++ R+ + +S+++ IC
Sbjct: 136 TSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQAQISRLVFIC 195
Query: 169 EKENI-SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKE 227
E+E I S TN+ +EA+V +QGD+R+++ LQ+ + + ++T + V+ + P + V +
Sbjct: 196 EQEKISSFTNEAMEALVRVSQGDLRRSITLLQTIGSLYKNITEDIVYDIAGIPPRVVVID 255
Query: 228 MLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVH 286
+L +C +G M D + + G+ DI+ I VA +++ + K I E+ N
Sbjct: 256 LLKSC-KGTMDDVDTAVKIIIDQGWDVSDIMSQICDIVANDVELDDISKARISLELSNRD 314
Query: 287 LRISEGVNSLLQLSGL 302
+ +G + QL L
Sbjct: 315 FALFQGASQYFQLLSL 330
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 169/310 (54%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L + + P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA ++ P KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
+S + L + +QGD+R+A+ LQS FG +T+ + V V ++
Sbjct: 192 LSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--DIPEPLKLSIIQEIGNVHLRI 289
C G+ + K + ++ GY II +F + DI + K I + + R+
Sbjct: 252 CKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRL 311
Query: 290 SEGVNSLLQL 299
+G + LQL
Sbjct: 312 VDGADEYLQL 321
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 178/319 (55%), Gaps = 10/319 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T ++V +ED + + SGN+P+++ GPPG GKTTTI A L G
Sbjct: 21 VEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGKDR 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK----VTLPPG----RHKIVILDEADSMTDG 111
+ VLE+NAS+DRGID VR +++ FA + P K+VILDEAD M+
Sbjct: 81 IRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAAPTIAAFKLVILDEADQMSGD 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + + +LS++ + ++E
Sbjct: 141 AQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKFVAQEE 200
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ T++GL A + GD+R+ LN LQ++ G +T E V++V P P V+ ++ +
Sbjct: 201 GVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYRVTGNPTPADVRGIVED 260
Query: 232 CVEGNMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + S++ +H + + G + D++ + + +D+P+ K ++ ++ +V +
Sbjct: 261 MIAHDFAASWEKVHQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAA 320
Query: 291 EGVNSLLQLSGLLARLCIV 309
G +SG+L +V
Sbjct: 321 GGAKETTCISGILGAFQLV 339
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L +G+ P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA Q K P KI++LDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ I ++E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + L + F + GD+R+A+ LQS FG +++E + V V+ +L
Sbjct: 192 LCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALLKA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C GN + K +++ GY ++ +F + + D+ + K I +++G +
Sbjct: 252 CKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLV 311
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 312 DGADEYLQL 320
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 172/310 (55%), Gaps = 13/310 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA---------QQKVTLPPGRHKIVILDEADSMTD 110
+K VLELNAS+DRGI+ VR KIK FA Q PP +KI+ILDEADSMT+
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPP--YKIIILDEADSMTE 129
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC++
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEML 229
E ++ ++ L + +QGD+R+A+ LQ FG ++++ + V V+ +
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALF 249
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ + K ++++ GY ++ +F V DI + K I + + +
Sbjct: 250 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCL 309
Query: 290 SEGVNSLLQL 299
+G + LQL
Sbjct: 310 VDGADEYLQL 319
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 169/310 (54%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L + + P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA ++ P KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
+S + L + +QGD+R+A+ LQS FG +T+ + V V ++
Sbjct: 192 LSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSGVVPLEVVNKLFTA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--DIPEPLKLSIIQEIGNVHLRI 289
C G+ + K + ++ GY II +F + DI + K I + + R+
Sbjct: 252 CKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRL 311
Query: 290 SEGVNSLLQL 299
+G + LQL
Sbjct: 312 VDGADEYLQL 321
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 172/310 (55%), Gaps = 13/310 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA---------QQKVTLPPGRHKIVILDEADSMTD 110
+K VLELNAS+DRGI+ VR KIK FA Q PP +KI+ILDEADSMT+
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP--YKIIILDEADSMTE 129
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC++
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEML 229
E ++ ++ L + +QGD+R+A+ LQ FG ++++ + V V+ +
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALF 249
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ + K ++++ GY ++ +F V DI + K I + + +
Sbjct: 250 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCL 309
Query: 290 SEGVNSLLQL 299
+G + LQL
Sbjct: 310 VDGADEYLQL 319
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 177/316 (56%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 42 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPEL 101
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 102 FRQRVLELNASDERGIQVIREKVKTFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 159
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 160 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDISEKE 219
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ N+G+ +V ++GD+R+A+ LQS G VT + + ++ + +
Sbjct: 220 NVKINNEGIAYLVKVSEGDLRKAITFLQSATRLTGGQEVTEKVITEIAGVVPTGTITGIF 279
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + ++ L G+A +I + V + D+ + K I +++ V
Sbjct: 280 YACQSGSFEKLEALVKDLIDEGHAATQLINQLHDVVVEKDDLTDKQKSIITEKLAEVDKC 339
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 340 LADGADEHLQLISLCA 355
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ + PP KIVILDEADSMT
Sbjct: 99 FRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D +++++ EKE
Sbjct: 157 AQGALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEML 229
N+ T++ + +V + GD+R+A+ LQS G +T + V ++ + +L
Sbjct: 217 NVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLL 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + + +L GYA ++ + V ++ D + K I++++ V
Sbjct: 277 SACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKC 336
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 337 LADGADEYLQLISLCA 352
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 180/310 (58%), Gaps = 7/310 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT D+ G + V +K F G +P+++ GPPG GKT+TI+ LA+ + G ++
Sbjct: 12 VEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYGKNY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 72 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 130
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N S KI + SRC R+ L + + ++ + E++ +
Sbjct: 131 EKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHEHLRISPAAK 190
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGF----GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
EA++ + GDMR+ LN LQ++ +T E +++ C P P ++ +L + +E +
Sbjct: 191 EALLELSNGDMRRVLNVLQASKATLESPEDEITDEVIYECCGAPRPQDIQTILKSILEDD 250
Query: 237 MKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLRISEGVN 294
+Y + + G A D+I +I ++ + + E ++S++ ++G++ IS+G N
Sbjct: 251 WSTAYDTLTRIRSSNGLALIDLIESIVKILEEYKLKKEETRISLLSQLGDIEYAISKGGN 310
Query: 295 SLLQLSGLLA 304
+Q S ++
Sbjct: 311 DKIQSSAVIG 320
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 175/309 (56%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP + D+ G D VE ++ F G +P+++ GPPG GKT+TI LA+ + G ++
Sbjct: 14 IEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTSTICALAKEIYGKNY 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT AQ ALRR +
Sbjct: 74 RNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTSAAQNALRRII 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L +A + +V+ I E++ T D
Sbjct: 133 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIERRVLSIMAHEHLQLTEDAR 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGH----VTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
A++ A GDMR+ALN LQ+ VT + V+ PHP ++ ++ + + +
Sbjct: 193 AALLRLAAGDMRRALNVLQAAKATLDDPAQPVTEDVVYDCVGAPHPRDIETVVDSILRDD 252
Query: 237 MKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ + + G A D+I + + D+ +P +++++ + ++ +S+G +
Sbjct: 253 WATALDTVRRVRVARGLALVDMIHGAVELLTSYDLKQPTRIALLTHLADIEYAVSKGGSD 312
Query: 296 LLQLSGLLA 304
+Q S +A
Sbjct: 313 KIQTSAAIA 321
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 15/314 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPVL 95
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI +R K+K FAQ V T P G+ KI+ILDEADSMT AQ
Sbjct: 96 YRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKPCPPFKIIILDEADSMTPPAQ 155
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L + +++ ICEKEN+
Sbjct: 156 AALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQVQEERLLAICEKENL 215
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDE-----PHPLAVKEM 228
++ + + A+V ++GD+R+A+ LQS V E + E PH + + +
Sbjct: 216 KYSGESVSALVRVSEGDLRKAITFLQSAAR--LSVDKEISERTITEIAGVVPHKM-IDSL 272
Query: 229 LLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLR 288
L C G + + +L GYA I+ + D+ + K +I +++ V
Sbjct: 273 LHICFRGTFEKLEVEVRNLVDEGYAATQILSQLHESIIEKDLGDKQKSAITEKMAVVSKC 332
Query: 289 ISEGVNSLLQLSGL 302
+S+G + LQ+ L
Sbjct: 333 LSDGADEYLQMLSL 346
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP+T D+ +D V LK S+GN+P+++ GPPG GKT+TIL +A + GP
Sbjct: 14 VSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPEL 73
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGRH-----KIVILDEADSMTDGA 112
K VLELNAS++RGI+ VR KIK FA V T+ G + K++ILDEADSMT A
Sbjct: 74 IKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEADSMTSDA 133
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRT+E S TTRF L CN +II+P+ SRCA R+ L + ++ I +E
Sbjct: 134 QAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKYISIQEG 193
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
I T+ +AI + GDMR+A+ LQS +G+ +T + ++ + PL + ++ +
Sbjct: 194 IKCTDSVYQAIQTVSDGDMRKAITYLQSAFRFYGNKLTEDTIYNISGTLSPLIITSLIKS 253
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C + KD + + GY ++ +F V + K I +IGNV +
Sbjct: 254 CKSNSFKDLQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQKSLISMKIGNVDRNLI 313
Query: 291 EGVNSLLQL 299
+G LQL
Sbjct: 314 DGSEEFLQL 322
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 175/313 (55%), Gaps = 12/313 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP+T D+ ED + LK ++GN+P+++ GPPG GKT+TIL +A + GP
Sbjct: 13 VAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPEL 72
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKV-------TLPPGRHKIVILDEADSMTDGA 112
K VLELNAS++RGI+ VR KIK FA V + P K++ILDEADSMT A
Sbjct: 73 MKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDA 132
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRT+E S TTRF L CN +II+P+ SRCA R+ L + ++ I ++E
Sbjct: 133 QAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEG 192
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
I +AI + GDMR+A+ LQS F + ++ + ++ + P +K+ L++
Sbjct: 193 IKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQ-LVD 251
Query: 232 CVEGNMKDSYK-IIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C + N D + ++ + GY +I +F V T D+ + K I +IGNV +
Sbjct: 252 CCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNL 311
Query: 290 SEGVNSLLQLSGL 302
+G LQL L
Sbjct: 312 IDGSEEFLQLFDL 324
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 176/311 (56%), Gaps = 9/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPVL 95
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI +R K+K FAQ V T P G+ KI+ILDEADSMT AQ
Sbjct: 96 YRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTPPAQ 155
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L + +++++ICEKEN+
Sbjct: 156 AALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNHIQETRLLDICEKENL 215
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
++ +G+ A+V ++GD+R+A+ LQS + +T + ++ + +L
Sbjct: 216 KYSKEGISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTITEIAGVVPNKMIDNLLHI 275
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
C G + + +L GYA I+ + D + K +I +++ V + +
Sbjct: 276 CFRGTFEKLEVAVRNLVDEGYAATQILSQLHESIIEKDFGDKQKSAIAEKMAVVSKCMLD 335
Query: 292 GVNSLLQLSGL 302
G + LQ+ L
Sbjct: 336 GADEFLQMLSL 346
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T I + D ++ ++ +P+++ GPPG GKT+TIL +AR + G S
Sbjct: 12 EKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYGSSLG 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ LELNAS+DRGI VRN+I+ FA + T+ + K++ILDE D+MT AQ ALRR ME
Sbjct: 72 NMTLELNASDDRGIAVVRNEIQDFASTR-TIFSNKFKLIILDECDAMTKDAQFALRRVME 130
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
Y+ RF L CN KII +QSRC R+ L + ++ IC++E+I T GLE
Sbjct: 131 KYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQESIKVTQGGLE 190
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVK---EMLLNCVEGNMK 238
A++ GDMR+ LN LQST G VT + + +P P ++ + LLN G
Sbjct: 191 ALIELGCGDMRRTLNLLQSTVMSAGEVTGDSAYATAGKPLPQDIERCAQWLLNEPLG--- 247
Query: 239 DSYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+ H+ L G A DI+ + + +P P+++ ++ ++ ++ R++ G +
Sbjct: 248 ---EAFQHMLDLQLQKGVALVDILQQLHPFVFRIGMPPPVRIQLVSKMADIEHRLAYGTS 304
Query: 295 SLLQLSGL 302
LQL L
Sbjct: 305 DRLQLGAL 312
>gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi]
gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi]
Length = 328
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 177/310 (57%), Gaps = 7/310 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + ++ F G +P++++ GPPG GKT+TIL + + L G S
Sbjct: 1 VEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGDSR 60
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI VR +IK FA+ K K++ILDEAD MT AQ A+R
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMR 120
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R+ L + +L+K ++I + EN++ T
Sbjct: 121 RIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRF-PLKEEYMLNKALDIAKSENVNITK 179
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
+G+E+++ +GDMR+ LN LQ ++ + + D P P +K +L + +
Sbjct: 180 NGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKS 239
Query: 236 NMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+K+SY+II L + GY+ +DI+ ++ T D P+ +++ G + R + G
Sbjct: 240 TIKESYEIITKLQEDKGYSIKDIMICLYEAVLTYDYPDSAICLLLKNFGEIEERCASGAT 299
Query: 295 SLLQLSGLLA 304
+ LS L++
Sbjct: 300 EQITLSSLIS 309
>gi|448302355|ref|ZP_21492337.1| Replication factor C small subunit [Natronorubrum tibetense GA33]
gi|445581584|gb|ELY35936.1| Replication factor C small subunit [Natronorubrum tibetense GA33]
Length = 1029
Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats.
Identities = 111/282 (39%), Positives = 168/282 (59%), Gaps = 10/282 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+G+VP ++ TT +AR + +++ LELNAS+ RGID VR++IK FA+
Sbjct: 753 AGDVPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFAR 805
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ H+I+ LDEAD++T AQ ALRRTME +SN TRF L+CN S +II+PIQSRC
Sbjct: 806 S--SFGGYNHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 863
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ +L++ + ++V EI E I T+DG++A+V+ A GDMR+A+N LQ+
Sbjct: 864 AVFRFTELSEKAIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMGET 923
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAK 266
V E VF + P V+ M+ + ++G+ + + L G A D+I + R A
Sbjct: 924 VDEETVFAITSTARPEEVEAMVEHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLHRSAW 983
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
DIPE + +++ +G V RI+EG N LQL +LA L +
Sbjct: 984 EFDIPEQATVRLLERLGEVDYRITEGANERLQLEAMLASLAL 1025
Score = 47.0 bits (110), Expect = 0.013, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
IEKYRP+ +I G+E+ V RL+ + +P+++ +GP G GK T
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLQNYVEQDELPHLMFAGPAGTGKCVT 66
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 175/318 (55%), Gaps = 14/318 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 40 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDL 99
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 100 FRSRVLELNASDERGIQVVREKVKNFAQLAVSGSRSDGKPCPP--FKIVILDEADSMTSA 157
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 158 AQAALRRTMEKESKATRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKE 217
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +N+G+E +V ++GD+R+A+ LQS G V + + + + +
Sbjct: 218 NVKISNEGIEYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIGGIF 277
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + L G+A ++ + V + ++ + K I +++ V
Sbjct: 278 AACKSGSFDKLEAAVKDLINEGHAATQLVSQLHDAVVENDNLSDKQKSIITEKLAEVDKC 337
Query: 289 ISEGVNSLLQLSGLLARL 306
+++G + LQL L A L
Sbjct: 338 LTDGADEYLQLISLCATL 355
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA Q+ P +KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+V+ IC +E
Sbjct: 132 QNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICREEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
++ + L + + +QGD+R+A+ LQ +G ++++ + V AV +
Sbjct: 192 LNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVIPQEAVGALYAA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C G+ + K ++++ GY ++ + V + DI + K I + +G +
Sbjct: 252 CRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQICKSLGAADKCLV 311
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 312 DGADEYLQL 320
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 156/263 (59%), Gaps = 3/263 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNI 261
+Y+ I L L G A DI+ I
Sbjct: 261 AYRNIMELKTLKGLALHDILTEI 283
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 175/310 (56%), Gaps = 11/310 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP +++ + D + + F +P+++ GPPG GKT+TIL +A+ L P
Sbjct: 13 VEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLYSPKE 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR + FA + G KIVILDEAD+MT+ AQ ALRR
Sbjct: 73 FNSMVLELNASDDRGIGIVRGPVLSFASTRTIFKSG-FKIVILDEADAMTNDAQNALRRV 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII IQSRC R+ L + Q++ ++ + ++E + T DG
Sbjct: 132 IEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVIQQERVDVTEDG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+ A+V A GDMR++LN LQST + V V+ HPL KE + N V + +
Sbjct: 192 MNALVTLANGDMRKSLNILQSTSMAYDVVNEVNVYTCVG--HPL--KEDISNIVNWMLNE 247
Query: 240 ----SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+Y I L L G A +DI+ + + +++P +++ ++ ++ + ++ G N
Sbjct: 248 DFTTAYNNILDLKTLKGLALQDILTEVHKFIHKVELPTKVRIKLLDKMAEIEYNLTAGTN 307
Query: 295 SLLQLSGLLA 304
+QL L+A
Sbjct: 308 EKIQLGSLIA 317
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 156/263 (59%), Gaps = 3/263 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNI 261
+Y+ I L L G A DI+ I
Sbjct: 261 AYRNIMELKTLKGLALHDILTEI 283
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A + + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQFVSQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A + + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQFVSQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 186/339 (54%), Gaps = 34/339 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++ E+ V+ L+ +GN+P+II GPPG GKT++IL A+ L GP+F
Sbjct: 14 VEKYRPNKIDEVSYQEEVVKSLEGVLQTGNLPHIIFHGPPGTGKTSSILAFAKQLYGPNF 73
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR----------------------- 96
+D +LELNAS+DRGI VR KIK FAQQ V P +
Sbjct: 74 YRDRILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQLFQIRNYKCPN 133
Query: 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLT 156
+KI+ILDEADSMT AQ ALRR +E S+TTRF + CN KIIEP+ SRC R+ +
Sbjct: 134 YKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITKIIEPLASRCVKFRFKPIV 193
Query: 157 DAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFK 215
+ L K+ EIC+KE I + + LE ++ + GD+R+++N +QS F + + V +
Sbjct: 194 EEAQLCKLKEICDKEYIQYEDQALEKLIHISNGDLRKSVNLIQSASTLFNKSINLQTVLE 253
Query: 216 VCD---EPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIP 271
+ + H + + E+LL + N+ + K + G++ + +I + + DI
Sbjct: 254 ISGSIPDEHVINLYEVLL---QKNLNELRKSVQQFIYQGFSADQLINQFSDIILYSNDIN 310
Query: 272 EPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310
E K I ++I ++E +S LQ+ + + CI+
Sbjct: 311 EIKKARIFEKIAQADQGLNERADSELQILNMFS--CILS 347
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 175/306 (57%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP I+ +++ + ++ F + +P+++ GPPG GKT+ ++ +A+ L G +
Sbjct: 8 VEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYGKAE 67
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+K+ +LELNAS+DRGI+ VR +IK F + + G K+VILDE DSMT AQ ALRR
Sbjct: 68 YKNMILELNASDDRGINVVREQIKSFCSTQQLMSKG-IKLVILDECDSMTSSAQFALRRI 126
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ TTRF CN KII +QSRC R+ L +L K+ EI E EN+ D
Sbjct: 127 VEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIAELENLRLDQDA 186
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
E+IV + GDMR+ LN L+S H+T + V+ V P P ++ + ++ + D
Sbjct: 187 AESIVKLSGGDMRKVLNVLESCSLAHKHITLQNVYDVTGRPSPYDIENIYISLNNDRLND 246
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ I+ L ++ + EDII I + + + +K+ +I + + R+++G + +
Sbjct: 247 ALNTINSLKQVKSLSVEDIISEIHKKVMQTKMLDEMKIFLISRMAEIEYRMAQGSSERVN 306
Query: 299 LSGLLA 304
L+ L+
Sbjct: 307 LASLVG 312
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E V L+ +GN+P+ + GPPG GKTTT L +A+ L GP
Sbjct: 19 VEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKELYGPEL 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP-PGR----HKIVILDEADSMTDGAQQ 114
+K V ELNAS++RGI VRNKIK FA Q V P PG +KI+ILDEAD+MT AQ
Sbjct: 79 YKQRVKELNASDERGISVVRNKIKTFASQAVGAPAPGYPSPPYKILILDEADAMTGDAQS 138
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR ME YS TRF L CN KII+PI SRCA R++ L + +++ I E+E +
Sbjct: 139 ALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKFIGEQEGLE 198
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGF-GHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
++D + GDMR+A+ LQS F G ++ + +V +K+M C
Sbjct: 199 MSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGKISGASIVEVAGHIPDEKIKKMYDLCR 258
Query: 234 EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
EG +++ + + + G++ I+ D + +K I ++G V +++G
Sbjct: 259 EGKFEEAQAHMEDILRDGFSGLKILDQYSDYVLEADCSDEVKAEIFIKLGEVDRFLAQGA 318
Query: 294 NSLLQLSGLLA 304
+ +QL+ L++
Sbjct: 319 DEGMQLATLVS 329
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP D++ + + + +K F + +P+++ GPPG GKT+TIL +A+ L G +
Sbjct: 11 VEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKELYGAKN 70
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
K VLELNAS+ RGID VRN+I FA + +L K++ILDE D+MT AQ ALRR
Sbjct: 71 LKKMVLELNASDARGIDVVRNEILNFASSR-SLHCKGFKVIILDECDAMTRDAQAALRRV 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME ++ RF L CN K+I IQSRC R+ L+ Q++ ++ + E+E I +G
Sbjct: 130 MEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDIDQNG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++ ++ A+GDMR++LN LQ++H F VT + V+KV P ++ M+ + ++K
Sbjct: 190 MDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLNQDIKY 249
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
I L + G A D++ +++ D+P+ K I+ + ++ R++ G +Q
Sbjct: 250 CMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGATEKIQ 309
Query: 299 LSGLLA 304
L+ ++A
Sbjct: 310 LAVIVA 315
>gi|449265791|gb|EMC76929.1| Replication factor C subunit 5, partial [Columba livia]
Length = 299
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 3/282 (1%)
Query: 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-SFKDAVLELNASNDRGIDTVRNKIK 83
F S +P++++ GPPG GKT+TIL AR L F VLELNAS+DRGID VR I
Sbjct: 6 FISEDRLPHLLLYGPPGTGKTSTILACARQLYREREFGSMVLELNASDDRGIDIVRGPIL 65
Query: 84 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPI 143
FA + G K+VILDEAD+MT AQ ALRR +E ++ TRF L CN KII +
Sbjct: 66 SFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL 124
Query: 144 QSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203
QSRC R+ LT ++ ++ + ++E + T DG++A+V + GDMR+ALN LQST
Sbjct: 125 QSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVTEDGMKALVTLSSGDMRRALNILQSTTM 184
Query: 204 GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIF 262
FG VT E V+ P + +L + + +Y+ I L L G A +DI+ I
Sbjct: 185 AFGKVTEENVYTCTGHPLESDIANILDWMLNQDFSTAYRKITELKTLKGLALQDILTEIH 244
Query: 263 RVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
+D P +++ ++ ++ ++ R++ G + +QLS L+A
Sbjct: 245 LFVHRVDFPPSIRIQLLIKLADIEYRLAAGTSEKIQLSSLIA 286
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 4/311 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F + +P+++ GPPG GKT+TIL AR L +
Sbjct: 14 VEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSSAH 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ G K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII +QSRC R+ L+ Q+L ++ +I ++E+++ T+DG
Sbjct: 133 IEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQEEHVNVTDDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE-GNMK 238
A++ ++GDMR+ LN LQST F V + V+ P ++ ML + +
Sbjct: 193 KNALLTLSKGDMRKVLNVLQSTSMAFDIVNEDNVYMCVGYPLRSEIEHMLQTLLSAATFE 252
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+Y I K G A EDI+ + L++P + +I ++ V R+S+G
Sbjct: 253 SAYDTIEEAKTKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKLAQVEERLSKGCTEKA 312
Query: 298 QLSGLLARLCI 308
Q + L++ I
Sbjct: 313 QTAALVSAFFI 323
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 175/315 (55%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQVHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 180/311 (57%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+ G + V L F +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 9 VEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYGKNY 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
VLELNAS+DRGID VRN+IK FA + G K+VILDEAD+MT+ AQ ALRR +
Sbjct: 69 SHMVLELNASDDRGIDVVRNQIKEFASTRQIFSRG-FKLVILDEADAMTNAAQNALRRII 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N S K+ +QSRC R+ L + + ++ + E++ + D +
Sbjct: 128 EKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHEHLRVSEDAV 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFG-----HVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
+A++ ++GDMR+ LN LQ++ G V+ + +++ C P ++++L + +E
Sbjct: 188 QALIKLSKGDMRRVLNVLQASKATLGDDESDEVSTDTIYECCGAARPADLRKILKSILEE 247
Query: 236 NMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGV 293
+ +Y +H + + G A D+I I + ++ E ++++ ++ ++ IS+G
Sbjct: 248 DWNTAYYTLHKIRQEQGLALIDLIEGIMEILDQYELQHEQTRINLCMKLADLEYAISKGG 307
Query: 294 NSLLQLSGLLA 304
+S +Q S L+
Sbjct: 308 DSKIQSSALIG 318
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 179/315 (56%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F +GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGIGVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N +II+PI SRCA+ R++ + + ++ EI E + +D
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGVELKDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
++ I ++GDMR+A+N LQ V A V P V E+ + G++
Sbjct: 184 AIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLAMGGDLA 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ +Y G A D+I R + + + +K + + + V R+++G + +
Sbjct: 244 KARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGADEEI 303
Query: 298 QLSGLLARLCIVGSK 312
QL L +L +G K
Sbjct: 304 QLMYFLMKLGSIGKK 318
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 181/325 (55%), Gaps = 16/325 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ + T+ LK +S N+P+++ GPPG GKT+TI L R L GP
Sbjct: 26 VEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRELYGPEL 85
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ V+ P +KI+ILDEADSMT
Sbjct: 86 SKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDEADSMTA 145
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME +SN TRF L CN +II+P+ SRC+ R+ L ++ + ++ EI +
Sbjct: 146 DAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRLKEISQL 205
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGH---VTAEYVFKVCDEPHPLAV 225
EN+ H L+ I+ + GDMR+A+ LQS GFG +T++ V ++ +
Sbjct: 206 ENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEVEELAGLVPTHIL 265
Query: 226 KEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGN 284
+EML +GN+ + + ++ K G++ ++ + T D K I + +
Sbjct: 266 QEMLNKVSQGNVNEIIEYVNEFVKNGWSAVSVVNQLHDYYITSNDYGTDFKNKISLLLFD 325
Query: 285 VHLRISEGVNSLLQLSGLLARLCIV 309
+++ G N LQL LL ++ V
Sbjct: 326 ADAKLANGTNEHLQLLNLLVQISQV 350
>gi|448320709|ref|ZP_21510195.1| replication factor C [Natronococcus amylolyticus DSM 10524]
gi|445605611|gb|ELY59533.1| replication factor C [Natronococcus amylolyticus DSM 10524]
Length = 1029
Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats.
Identities = 110/282 (39%), Positives = 169/282 (59%), Gaps = 10/282 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+G+VP ++ TT +AR + +++ LELNAS+ RGID VR++IK FA+
Sbjct: 753 AGDVPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFAR 805
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ H+I+ LDEAD++T AQ ALRRTME +SN TRF L+CN S +II+PIQSRC
Sbjct: 806 S--SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 863
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ +LT+ + +++ +I E E I T+DG++A+V+ A GDMR+A+N LQ+
Sbjct: 864 AVFRFTELTEDAVEAQIRDIAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMGEV 923
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAK 266
V E VF + P V+ M+ ++G+ + + L + G A D+I + R A
Sbjct: 924 VDEETVFAITSTARPEEVEAMVDQAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAW 983
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
D+PE + +++ +G V RI+EG N LQL +LA L +
Sbjct: 984 QFDLPEKATVRLLERLGEVDYRITEGANERLQLEAMLASLAL 1025
Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GK T
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKCVT 66
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 183/315 (58%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SG++P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N +II+PI SRCA+ R++ + + ++ I + E + +D
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKSEGVELRDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
++ I ++GDMR+A+N LQ V + V P + E+ + G++
Sbjct: 184 AIDIIYELSEGDMRKAINLLQVVAATNKVVDSNAVAAAAATIKPSDIIELFNLAIGGDVS 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ +Y G A D I R + + + +K I + + ++ R+++G + +
Sbjct: 244 KAREKLRELMYLKGVAGVDFIRAFQRELIRMALDDDVKAEIAELLADIDYRLTQGADEEI 303
Query: 298 QLSGLLARLCIVGSK 312
QL+ LL++L +G +
Sbjct: 304 QLTYLLSKLGALGRR 318
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 185/334 (55%), Gaps = 32/334 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F S +P++++ GPPG GKT+TIL LAR + G +
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK---VTLPP-----GRHKIVILDEADSMTDG 111
+ VLELNAS+DRGID VR +IK FA K T P G K++ILDEAD+MT
Sbjct: 108 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSA 167
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR ME Y+ TRF + N + K+ + SRC R++ L + + V + EKE
Sbjct: 168 AQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKE 227
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH---------NGFGH--------VTAEYVF 214
+ D ++++V ++GDMR+ALN LQ+ H G G+ +T E ++
Sbjct: 228 EVQIQPDAVDSLVTLSKGDMRRALNVLQACHASSMPLPSKKGDGNEQQQERETITEETIY 287
Query: 215 KVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDI 270
PHP +K +L + + D ++ + L G A DII + ++L++
Sbjct: 288 TCIAAPHPADIKIILETLL--STSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEV 345
Query: 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
P +++S I+ + +V R+S G + ++Q G++
Sbjct: 346 PAQVRVSWIEGLADVEWRLSGGGSEVIQTGGMIG 379
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 181/316 (57%), Gaps = 13/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +++ G +D V ++ F +G +P+++ GPPG GKT+TI+ LAR + GP++
Sbjct: 12 VEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPNY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG---RHKIVILDEADSMTDGAQQALR 117
K+ VLELNAS+DRGID VRN+IK FA + + K++ILDEAD+MT AQ +LR
Sbjct: 72 KNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNSLR 131
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ RF + N S K+ + SRC R++ + +A + S++ + KE ++ T
Sbjct: 132 RIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSRIDNVIIKEKVNITP 191
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGH-------VTAEYVFKVCDEPHPLAVKEMLL 230
D L A++ +QGDMR++LN LQ+ G + E ++ PHP ++ +L
Sbjct: 192 DALNALLQLSQGDMRRSLNVLQACKAACGDDDDNSETIDVEMIYNCVGAPHPQDIETVLD 251
Query: 231 NCVEGNMKDSYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLR 288
+ ++ + +Y ++ YK+ G A D+I + + ++ ++ + V
Sbjct: 252 SILKQDWTTAYMTLNK-YKIDKGLALIDLITGFIDILNDYKVKPKTRIEYLKGLSEVEYG 310
Query: 289 ISEGVNSLLQLSGLLA 304
IS+G N +Q S ++
Sbjct: 311 ISKGGNDRIQSSAIIG 326
>gi|448509973|ref|ZP_21615854.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
gi|445696314|gb|ELZ48405.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
Length = 208
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 134/193 (69%), Gaps = 4/193 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
IEKYRPQT DI G E+ VERL+ + + +VP+++ SGP GVGKTT +AR + G +
Sbjct: 19 IEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGEDN 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ LELNAS+ RGID VR++IK FA+ G +IV LDE+DS+TD AQ ALRRT
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKGFARSSFG---GDFRIVFLDESDSLTDDAQSALRRT 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME +S+ TRF L+CN S KII+PIQSRCA+ R++ L+D + V EI E I T+ G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAG 195
Query: 180 LEAIVFTAQGDMR 192
++A+V+ A GDMR
Sbjct: 196 VDALVYAADGDMR 208
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 175/315 (55%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 175/315 (55%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 175/315 (55%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 175/315 (55%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 175/307 (57%), Gaps = 5/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP++ +++ +E + + F +P++++ GPPG GKT+TIL AR L P+
Sbjct: 15 VEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTPTQ 74
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA T+ K++ILDEAD+MT AQ ALRR
Sbjct: 75 FNSMVLELNASDDRGIGIVRGQILSFASTG-TMYKSAFKLIILDEADAMTIDAQNALRRI 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L Q++ ++ + E EN+ T DG
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNYVIEAENLKVTEDG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
EA++ + GDMR+ L+ LQST +G V E V+ P P + ++ + +
Sbjct: 194 KEALMTLSGGDMRKVLSVLQSTWFAYGIVNQENVYNCVGHPLPSDIHTIINWLLNESYDT 253
Query: 240 SYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
YK I L KL G A +DI+ I +D P + + ++ ++ + R++ G ++
Sbjct: 254 CYKKIQEL-KLNKGLALQDILTEIHLCVIKIDFPNSVFIDLLCKMAEIEKRLASGCRDII 312
Query: 298 QLSGLLA 304
Q++ L++
Sbjct: 313 QINSLIS 319
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 184/334 (55%), Gaps = 32/334 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F S +P++++ GPPG GKT+TIL LAR + G +
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK---VTLPP-----GRHKIVILDEADSMTDG 111
+ VLELNAS+DRGID VR +IK FA K T P G K++ILDEAD+MT
Sbjct: 108 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSA 167
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR ME Y+ TRF + N + K+ + SRC R++ L + + V + EKE
Sbjct: 168 AQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKE 227
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH---------NGFGH--------VTAEYVF 214
+ D ++++V ++GDMR+ALN LQ+ H G + +T E ++
Sbjct: 228 EVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDANEQQRERETITEETIY 287
Query: 215 KVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDI 270
PHP +K +L + + D ++ + L G A DII + ++L++
Sbjct: 288 TCIAAPHPADIKIILETLL--STSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEV 345
Query: 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
P +++S I+ + +V R+S G N ++Q G++
Sbjct: 346 PAQVRVSWIEGLADVEWRLSGGGNEVIQTGGMIG 379
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 19/311 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +IV ++D + ++ F +P+++ GPPG GKT+TIL A+ + GP F
Sbjct: 42 VEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTGKTSTILACAKKIYGPKF 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ +LELNAS++RGID VR +IK FA K G K+VILDEAD+MT AQ ALRR +
Sbjct: 102 RNQLLELNASDERGIDVVREQIKNFASTKQIFNSG-FKLVILDEADAMTLAAQNALRRVI 160
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R+ L+ ++ K+ + + ENI+ + G
Sbjct: 161 EKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEICLKLDYVIKNENINISEKGK 220
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+V A GDMR+ LN LQ+ H + + + V+ PHP E++ V+ D
Sbjct: 221 AELVKLADGDMRKGLNILQACHAAYDFIDEDAVYNCVGNPHP----EIIELIVKSLFNDE 276
Query: 241 Y-----KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ II + G A DII ++ V L++P L+ R+S G +
Sbjct: 277 FLICLNTIIKVKTERGLALLDIITGVYEVLDELELPINLQ---------YRYRLSNGASE 327
Query: 296 LLQLSGLLARL 306
+QLS ++ +
Sbjct: 328 KIQLSAMIGTI 338
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 190/349 (54%), Gaps = 38/349 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T SD+ + TV+ L+ S N+P+++ GPPG GKT+T+L LA+ L GP
Sbjct: 36 VEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPDM 95
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHK---------IVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ ++T PP +K I+ILDEADSMT
Sbjct: 96 IKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPPFKIIILDEADSMTQ 155
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L + ++ EI EK
Sbjct: 156 DAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLEEIAEK 215
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL 230
E + + ++A++ ++GD+R+A+ LQS G ++ + DE + K + +
Sbjct: 216 EGVPLEDGAVDALIKCSEGDLRKAITFLQSAARLVGASASDKDGE-GDEAMDVDKKAVTV 274
Query: 231 NCVE---GNMKD-----------------SYK----IIHHLYKLGYAPEDIIGNIFRVAK 266
VE G + D SY+ ++ L G++ ++G +++ A
Sbjct: 275 KIVEDIAGVIPDSTIGDLVSAIRPKSSGSSYQAISDVVEKLVADGWSAGQVVGQLYQ-AL 333
Query: 267 TLD--IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKN 313
T D IP+ K I+ V R+ +G + L + L R+ + +K
Sbjct: 334 TYDEIIPDAQKNKIVMVFSEVDKRLVDGADEHLSVLDLSVRISAILAKK 382
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 172/326 (52%), Gaps = 17/326 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T +V +ED + L+ SGN+P++++ GPPG GKTTTI A L G
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDR 79
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL---------------PPGRHKIVILDE 104
+ VLE+NAS+DRGID VR + + FA P + K+VILDE
Sbjct: 80 VRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFKLVILDE 139
Query: 105 ADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164
AD M+ AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + + ++ ++
Sbjct: 140 ADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRL 199
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA 224
+ E+E + +T DGL A + GD+R+ LN +Q++ VT E V++V P P
Sbjct: 200 RFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEVTEESVYRVTGNPTPAD 259
Query: 225 VKEMLLNCVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIG 283
V ++ + + + S+ K+ + + G + D+ I V +D+P+ K ++ ++
Sbjct: 260 VTAIVSDMLSSDFATSWIKVEESVVQKGISIADLTREIHPVMMAMDLPQDCKCFLLMKLS 319
Query: 284 NVHLRISEGVNSLLQLSGLLARLCIV 309
++ + G L GLL +V
Sbjct: 320 DLEYYAAGGARESAGLGGLLGAFQLV 345
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 16/317 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKRVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRSRVLELNASDERGIQVVREKVKSFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKTQQQRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ TN+G+ ++ ++GD+R+A+ LQS VT + + + + +
Sbjct: 219 NVKITNEGIAYLINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMDIAGVIPAETIDGIF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHL 287
C G+ ++ L G+ P + N F V + + + K I +++ V
Sbjct: 279 AVCQSGSFDKLEAVVKDLIDEGH-PATQLVNQFHDVVVENHHLSDKQKSVITEKLAEVDQ 337
Query: 288 RISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 338 CLADGADEHLQLISLCA 354
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 173/326 (53%), Gaps = 17/326 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T +V +ED + L+ SGN+P++++ GPPG GKTTTI A L G
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDR 79
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL---------------PPGRHKIVILDE 104
+ VLE+NAS+DRGID VR + + FA P + K+VILDE
Sbjct: 80 VRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPAAKFKLVILDE 139
Query: 105 ADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164
AD M+ AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + + ++ ++
Sbjct: 140 ADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRL 199
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA 224
+ E+E + +T DGL A ++GD+R+ LN +QS+ +T E V++V P P
Sbjct: 200 RYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSALSANEITEESVYRVTGNPTPAD 259
Query: 225 VKEMLLNCVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIG 283
V ++ + + + S+ K+ + + G + D+ I + +D+P+ K ++ ++
Sbjct: 260 VTAIVSDMLSSDFATSWIKVEEGVLQKGISMADLTREIHPIMMAMDLPQDCKCFLLMKLS 319
Query: 284 NVHLRISEGVNSLLQLSGLLARLCIV 309
++ + G L GLL +V
Sbjct: 320 DLEYYAAGGARESAGLGGLLGAFQLV 345
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 178/316 (56%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ + PP KIVILDEADSMT
Sbjct: 99 FRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKVCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D +++++ EKE
Sbjct: 157 AQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEML 229
++ +++ + +V ++GD+R+A+ LQS G +T + V ++ + E+L
Sbjct: 217 HVKISSEAVSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTEIAGVIPKETIDELL 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + + +L GYA ++ + V ++ + K +I++++ V
Sbjct: 277 SVCQSGSFEKLETLAKNLINEGYAVAQLVNQLHDAVVESEAYRDKEKSAIVEKLAEVDKC 336
Query: 289 ISEGVNSLLQLSGLLA 304
+ +G + LQL L A
Sbjct: 337 LVDGADEYLQLMSLCA 352
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 179/308 (58%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T ++ G+E + +K F G +P+++ GPPG GKTTTI+ +AR + G ++
Sbjct: 20 VEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNY 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ +LELNAS++RGID VR++IK FA + G K+VILDEAD+MT+ AQ ALRR +
Sbjct: 80 RNMILELNASDERGIDVVRDQIKTFASTRQIFSSG-FKLVILDEADAMTNAAQNALRRII 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS TRF + N + K+ + SRC R++ L + + ++ + E+E++ + +
Sbjct: 139 EKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEAF 198
Query: 181 EAIVFTAQGDMRQALNNLQSTH---NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
++++ + GDMR+ALN LQ+ + + ++ E V+ P P ++ +L ++G+
Sbjct: 199 QSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLDGSW 258
Query: 238 KDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + ++ + G A D++ + LD+ +++++ + + R+S G N
Sbjct: 259 ESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSSGGNES 318
Query: 297 LQLSGLLA 304
+Q S +
Sbjct: 319 IQTSATIG 326
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 166/308 (53%), Gaps = 9/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ + L + ++P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ------QKVTLPPGRHKIVILDEADSMTDGAQ 113
+K VLELNAS+DRGI+ VR KIK FA +K P +KI+ILDEADSMT+ AQ
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDAQ 131
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRT E YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC +E +
Sbjct: 132 NALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEGL 191
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL-AVKEMLLNC 232
+ + + +QGD+R+A+ LQS FG + P VK +L C
Sbjct: 192 NLNAQAMSTLSVISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKSLLAAC 251
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISE 291
G + K + + GY ++ V + DIP+ K I +++G + +
Sbjct: 252 RSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKCLVD 311
Query: 292 GVNSLLQL 299
G + LQL
Sbjct: 312 GADEYLQL 319
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 191/328 (58%), Gaps = 14/328 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++ E+ ++ L+ SGN+P++I+ GPPG GKT++IL A+ L GP+F
Sbjct: 45 VEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYGPTF 104
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR------HKIVILDEADSMTDGAQ 113
K+ +LELNAS+DRGI VR+KIK FAQQ V+ P + KI+ILDEADSMT AQ
Sbjct: 105 YKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADSMTTEAQ 164
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRR +E S+TTRF + CN KIIEP+ SRC R+ + ++K+ EIC+ E+I
Sbjct: 165 SALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKTEDI 224
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF-GHVTAEYVFKVCDEPHPLAVKEMLLNC 232
+ + LE ++ + GD+R+++N LQS + + E + ++ + L + + L
Sbjct: 225 EYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISGVNYLLCINK-LYKL 283
Query: 233 VEGNMKDSYK--IIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRI 289
+ G D K + LY+ GY+P+ ++ + + D E K I+++I +
Sbjct: 284 LIGKDFDKLKEGVKQFLYQ-GYSPDQLLYQFSEYIISSKDFNEVKKARILEKIALADKGL 342
Query: 290 SEGVNSLLQLSGLLARLCIVGSKNKKTD 317
+E +S LQ+ + + C+ +N TD
Sbjct: 343 NERADSELQILNMFSS-CLSVLQNPDTD 369
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 166/308 (53%), Gaps = 9/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ + L + ++P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ------QKVTLPPGRHKIVILDEADSMTDGAQ 113
+K VLELNAS+DRGI+ VR KIK FA +K P +KI+ILDEADSMT+ AQ
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDAQ 131
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRT E YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC +E +
Sbjct: 132 NALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEGL 191
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL-AVKEMLLNC 232
+ + + +QGD+R+A+ LQS FG + P VK +L C
Sbjct: 192 NLNAQAMSTLSVISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKSLLAAC 251
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISE 291
G + K + + GY ++ V + DIP+ K I +++G + +
Sbjct: 252 RSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKCLVD 311
Query: 292 GVNSLLQL 299
G + LQL
Sbjct: 312 GADEYLQL 319
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP D++ + + + +K F + +P+++ GPPG GKT+TIL +A+ L G +
Sbjct: 11 VEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKELYGAKN 70
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
K VLELNAS+ RGI+ VRN+I FA + +L K++ILDE D+MT AQ ALRR
Sbjct: 71 LKKMVLELNASDARGINVVRNEILNFASSR-SLHCKGFKVIILDECDAMTRDAQAALRRV 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME ++ RF L CN K+I IQSRC R+ L+ Q++ ++ + E+E I +G
Sbjct: 130 MEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDIDQNG 189
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++ ++ A+GDMR++LN LQ++H F VT + V+KV P ++ M+ + ++K
Sbjct: 190 MDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLNQDIKY 249
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
I L + G A D++ +++ D+P+ K I+ + ++ R++ G +Q
Sbjct: 250 CMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGATEKIQ 309
Query: 299 LSGLLA 304
L+ ++A
Sbjct: 310 LAVIVA 315
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 172/326 (52%), Gaps = 17/326 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T +V +ED + L+ SGN+P++++ GPPG GKTTTI A L G +
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKAR 79
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL---------------PPGRHKIVILDE 104
+ VLE+NAS+DRGID VR + + FA P + K+VILDE
Sbjct: 80 VRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPAAKFKLVILDE 139
Query: 105 ADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164
AD M+ AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + + ++ ++
Sbjct: 140 ADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSSMMPRL 199
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA 224
+ E+E + +T DGL A + GD+R+ LN +Q++ +T E V++V P P
Sbjct: 200 RYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEITEESVYRVTGNPTPAD 259
Query: 225 VKEMLLNCVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIG 283
V ++ + + + S+ K + + G + D+ I V +D+P+ K ++ ++
Sbjct: 260 VTAIVSDMLSSDFATSWVKAEESVVQKGISMADLTREIHPVMMAMDLPQDCKCFLLMKLS 319
Query: 284 NVHLRISEGVNSLLQLSGLLARLCIV 309
++ + G L GLL +V
Sbjct: 320 DLEYYAAGGARESAVLGGLLGAFQLV 345
>gi|448307233|ref|ZP_21497133.1| Replication factor C small subunit [Natronorubrum bangense JCM 10635]
gi|445596211|gb|ELY50304.1| Replication factor C small subunit [Natronorubrum bangense JCM 10635]
Length = 1029
Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats.
Identities = 111/282 (39%), Positives = 167/282 (59%), Gaps = 10/282 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+G+VP ++ TT +AR + +++ LELNAS+ RGID VR++IK FA+
Sbjct: 754 AGDVPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFAR 806
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ H+I+ LDEAD++T AQ ALRRTME +SN TRF L+CN S +II+PIQSRC
Sbjct: 807 S--SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 864
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ +L+ L +++ EI E I T+DG++A+V+ GDMR+A+N LQ+
Sbjct: 865 AVFRFTELSADALEAQIREIAAIEGIDVTDDGVDALVYAGDGDMRKAINGLQAAAVMGDV 924
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAK 266
V E VF + P V+ M+ + ++G+ + + L + G A D+I + R A
Sbjct: 925 VDEETVFAITSTARPEEVEAMVDHAIDGDFTAARAALEDLLMERGLAGGDVIDQLHRSAW 984
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
DIPE + +++ +G V RISEG N LQL +LA L +
Sbjct: 985 EFDIPEQATVRLLERLGEVDYRISEGANERLQLEAMLASLAL 1026
Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
IEKYRP+ +I G+E+ V RL+ + ++P+++ +GP G GK T
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKCVT 66
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 180/313 (57%), Gaps = 10/313 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+T ++ ++ V LK ++PN++ GPPG GKT+TIL +R L G
Sbjct: 31 VEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRELFGADM 90
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI VR+K+K FAQ P G+ KI+ILDEADSMT+ AQ
Sbjct: 91 YRSRVLELNASDERGIQVVRDKVKKFAQTAAGGIRPDGKPRPPFKIIILDEADSMTNDAQ 150
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S T+F L CN +IIEP+ SRC+ R+ L+ K+ EICE ENI
Sbjct: 151 AALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLREICEVENI 210
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + L+AI+ ++GDMR+++ LQS H + E V+++ + +++ +
Sbjct: 211 NCGEEALDAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAGVIPDRIIDDLIQS 270
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C G+ + + + L + GY+ ++ IF + + ++ + K +I + + + R+
Sbjct: 271 CYGGSYEKLDEKVQELLQDGYSASQVVNQIFDIIVERGELTDTQKSAIAERLAVIDKRLC 330
Query: 291 EGVNSLLQLSGLL 303
+G + LQ+ L
Sbjct: 331 DGADEGLQIMDLF 343
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 167/308 (54%), Gaps = 9/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ + L + ++P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ------QKVTLPPGRHKIVILDEADSMTDGAQ 113
+K VLELNAS+DRGI+ VR KIK FA +K P +KI+ILDEADSMT+ AQ
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDAQ 131
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E +
Sbjct: 132 NALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMSNRIMHICNEEGL 191
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL-AVKEMLLNC 232
+ L + +QGD+R+A+ LQS FG + P VK +L C
Sbjct: 192 NLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKSLLAAC 251
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQEIGNVHLRISE 291
G + K + ++ GY ++ V DIP+ K I +++G + +
Sbjct: 252 RSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVGADDIPDDQKARICKKLGETDKCLVD 311
Query: 292 GVNSLLQL 299
G + LQL
Sbjct: 312 GADEYLQL 319
>gi|363740218|ref|XP_003642280.1| PREDICTED: replication factor C subunit 5-like [Gallus gallus]
Length = 347
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 162/282 (57%), Gaps = 3/282 (1%)
Query: 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-SFKDAVLELNASNDRGIDTVRNKIK 83
F S +P++++ GPPG GKT+TIL AR L F VLELNAS+DRGID VR I
Sbjct: 54 FISEDRLPHLLLYGPPGTGKTSTILACARQLYREREFSSMVLELNASDDRGIDIVRGPIL 113
Query: 84 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPI 143
FA + G K+VILDEAD+MT AQ ALRR +E ++ TRF L CN KII +
Sbjct: 114 SFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL 172
Query: 144 QSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203
QSRC R+ LT ++ ++ + ++E + + DG++A+V + GDMR+ALN LQST
Sbjct: 173 QSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVSEDGMKALVTLSSGDMRRALNILQSTSM 232
Query: 204 GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIF 262
FG VT E V+ P + +L + +Y+ I L L G A +DI+ I
Sbjct: 233 AFGKVTEENVYTCTGHPLKADIANILDWMLNQKFSTAYRKIMELKTLKGLALQDILTEIH 292
Query: 263 RVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
+D P +++ ++ ++ ++ R++ G + +QLS L+A
Sbjct: 293 LFVHRVDFPPSVRIQLLIKMADIEYRLAAGTSEKVQLSSLIA 334
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 177/319 (55%), Gaps = 10/319 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T D+V +E+ ++ + +SG++P+++ GPPG GKTTTI A L G
Sbjct: 21 VEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPGTGKTTTIKACAHHLFGKER 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL---PPGRH-----KIVILDEADSMTDG 111
+ VLE+NAS+DRGID VR +++ FA PG K+VILDEAD M+
Sbjct: 81 LRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQTVTNFKLVILDEADQMSSD 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E ++ RF + CN+ KII +QSRC R++ + + +L ++ I +E
Sbjct: 141 AQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRFSPVKKSAMLPRLKLIAREE 200
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ T++GL + + GDMR+ LN +Q++ G +T E V++ P P V+ M+ +
Sbjct: 201 GVPFTDEGLISAFRLSDGDMRRCLNTMQASSMSAGEITEESVYRTTGNPTPTDVRVMVGD 260
Query: 232 CVEGNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ N S++ + L G + D++ + + +D+P+ K ++ ++ +V +
Sbjct: 261 MLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVMAMDLPQDCKCFLLIKLADVEYYAA 320
Query: 291 EGVNSLLQLSGLLARLCIV 309
G ++ + G+L +V
Sbjct: 321 GGTREMINIGGVLGAFQLV 339
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG--P 58
+EKYRP D+V +ED V L S N+P++++ GPPG GKT+TI+ A+ + G
Sbjct: 4 VEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGSTA 63
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
++ LELNAS+ RGID VRN+IK FA + G K++ILDEAD+MT AQ ALRR
Sbjct: 64 AYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSG-IKLIILDEADAMTSDAQFALRR 122
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E ++ RF L CN KII +QSRC R+ L Q+ S+++E+ + E ++T D
Sbjct: 123 VIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVADAEKCNYTED 182
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVK---EMLLNCVEG 235
G++AI+ + GDMR+ LN LQST G V + V+ P P V E L+N
Sbjct: 183 GIQAILDLSGGDMRRVLNLLQSTAMGSEIVDEKNVYMTSGAPLPRDVHVAMEWLMNL--- 239
Query: 236 NMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
KD Y K+ + GYA DI+ + + P + ++ + +V R++ G +
Sbjct: 240 EFKDVYEKLTNMCSTKGYALTDILTELANKVTEANFPPGVLAVLLDGMSDVEHRLAFGTD 299
Query: 295 SLLQLSGLL 303
LQ + L+
Sbjct: 300 EKLQAASLV 308
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 24/329 (7%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V LK ++PN++ GPPG GKT+TIL +AR L G
Sbjct: 34 VEKYRPKCVDDVAQQEEVVMVLKKSLEGADLPNLLFYGPPGTGKTSTILAVARELYGHEM 93
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ--QKVTLPPGR----HKIVILDEADSMTDGAQ 113
K VLELNAS++RGI +R+K+K F+Q + P G+ K+VILDEADSMT AQ
Sbjct: 94 LKQRVLELNASDERGIQVIRDKVKTFSQLSASASRPDGKPCPPFKLVILDEADSMTPSAQ 153
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME + TTRF L CN +IIEP+ SRC+ R+ L+ L ++ EIC KE +
Sbjct: 154 AALRRTMEKQTKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSSEILERRLKEICVKEEV 213
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + ++ ++ ++GDMR+A+ LQS H G + AE + ++ A+ + L+
Sbjct: 214 NCEDKAIDEVIKISEGDMRKAITFLQSAHRLKGDSGIVAEDIIEIAG-----AIPDNLIK 268
Query: 232 CV-EGNMKDSYK----IIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNV 285
+ + + DSY+ ++ + G+A +IG + ++ + D+ + K +I+++I V
Sbjct: 269 SLFDASRSDSYQKLEGVVKEIIAEGHAASQLIGQVHDQIVQMEDLNDHQKSAIMEKIAIV 328
Query: 286 HLRISEGVNSLLQL----SGLLARLCIVG 310
+ +G + LQ+ S ++ + C G
Sbjct: 329 DKCLIDGADEYLQVLSMCSVMMQQFCHAG 357
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 179/312 (57%), Gaps = 9/312 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +++ G +D V ++ F +G +P+++ GPPG GKT+TI+ LAR + GP +
Sbjct: 12 VEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIYGPHY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG---RHKIVILDEADSMTDGAQQALR 117
K+ VLELNAS+DRGID VRN+IK FA + + K++ILDEAD+MT AQ +LR
Sbjct: 72 KNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNSLR 131
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E Y+ RF + N S K+ + SRC R++ + + + S++ + KE ++ T
Sbjct: 132 RIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKEKVNITP 191
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGH---VTAEYVFKVCDEPHPLAVKEMLLNCVE 234
D L A++ +QGDMR++LN LQ+ G + E ++ PHP ++ +L + ++
Sbjct: 192 DALNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVGAPHPQDIEAVLDSILK 251
Query: 235 GNMKDSYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+ +Y ++ YK+ G A D+I + + ++ ++ + V IS+G
Sbjct: 252 QDWTTAYLTLNK-YKIDKGLALVDLITGFIEILNDYKVKPKTRIEYLKGLCEVEYGISKG 310
Query: 293 VNSLLQLSGLLA 304
N +Q S ++
Sbjct: 311 GNDKIQSSAIIG 322
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 168/308 (54%), Gaps = 9/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L + ++P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ------QKVTLPPGRHKIVILDEADSMTDGAQ 113
+K VLELNAS++RGI+ VR KIK FA +K P +KI+ILDEADSMT+ AQ
Sbjct: 72 YKSRVLELNASDERGINVVRTKIKDFAAVAVGTARKGGYPCPPYKIIILDEADSMTEDAQ 131
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E +
Sbjct: 132 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMTNRILHICHEEGL 191
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLNC 232
+ L + QGD+R+A+ LQS FG +++ + V VK +L C
Sbjct: 192 TLDAQALSTLSAICQGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDIVKSLLGAC 251
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQEIGNVHLRISE 291
G + K + + GY ++ V DIP+ K I +++G + +
Sbjct: 252 KSGEFDVANKEVSSIIADGYPVSQLLSQFLDVIVNADDIPDEQKARICKKLGEADKCLVD 311
Query: 292 GVNSLLQL 299
G + LQL
Sbjct: 312 GADEYLQL 319
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 175/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRSRVLELNASDERGIQVVREKVKNFAQLAVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVTRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +N+G+ +V ++GD+R+A+ LQS G V + + + + +
Sbjct: 219 NVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ +L G+A +I + + + ++ + K + +++
Sbjct: 279 AACQSGSFDKLEAVVKNLINEGHAATQLINQVHDAIVENDNLSDKQKSIMTEKLAEADKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLISLCA 354
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G VT + + + + +
Sbjct: 219 HVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G+A ++ + V D + + K I +++ V
Sbjct: 279 AACQSGSFDKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLISLCA 354
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 174/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ +I E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 40 VEKYRPKCVDEIAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 99
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 100 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 157
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 158 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 217
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 218 HVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAQTIDGIF 277
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G+A ++ V D + + K I +++ V
Sbjct: 278 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQFHDVVVENDNLSDKQKSIITEKLAEVDKC 337
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 338 LADGADEHLQLISLCA 353
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 175/318 (55%), Gaps = 12/318 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP+T D+ ++ V LK G +P+++ GPPG GKT+TIL +A L GP
Sbjct: 31 VSKYRPRTVDDVAHQDEVVRALKKSLDGGALPHLLFYGPPGTGKTSTILAIAMDLYGPDL 90
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGRH----KIVILDEADSMTDGAQ 113
KD VLELNAS++RGI+ VR KIK FA V T G+ K++ILDEADSMT AQ
Sbjct: 91 IKDRVLELNASDERGIEIVRTKIKNFASFTVNNTTVAGKQVPSFKLIILDEADSMTQDAQ 150
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRT+E S TTRF L CN +IIEP+ SRCA R+ L + ++ I ++E +
Sbjct: 151 AALRRTIENTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKPLKSEAMGERLKYIADQEGV 210
Query: 174 SHTNDG-LEAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEMLL 230
+ N+ L+AI +QGDMR+A+ +QS H + +T ++ + P ++ +
Sbjct: 211 NLANESTLDAIHTVSQGDMRKAITFMQSAHRFYASKSITDANIYDISGSVEPKTLELFIN 270
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLR 288
+C G+ ++ + LGY II +F V ++ + I +IG +
Sbjct: 271 SCKSGDFYKVRHLVERVMALGYPASQIISQLFDIVVQPSIHFNNIQRTKIAIKIGQIDRN 330
Query: 289 ISEGVNSLLQLSGLLARL 306
+ +G + LQL L A +
Sbjct: 331 LVDGSDEFLQLFDLGAYM 348
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 143/222 (64%), Gaps = 11/222 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP++ +D+ + T+ L+ S N+P+++ GPPG GKT+TIL L+R L GP+
Sbjct: 38 VEKYRPKSLADVTAQDHTITVLQRTLQSSNLPHMLYYGPPGTGKTSTILALSRSLYGPAL 97
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR----------HKIVILDEADSMT 109
F VLELNAS++RGI VR K+K FA+ +++ PPG +KI+ILDEADSMT
Sbjct: 98 FHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCPPYKIIILDEADSMT 157
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ ++ + Q +++ EI E
Sbjct: 158 QDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRMGEGQAGTRLREIAE 217
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE 211
KE + +EA++ ++GD+R+A+ LQS G A+
Sbjct: 218 KEKVPMEEGVVEALIKHSEGDLRKAITFLQSAARLVGAAGAD 259
>gi|110669521|ref|YP_659332.1| replication factor C small subunit I [Haloquadratum walsbyi DSM
16790]
gi|121684598|sp|Q18E75.1|RFCS_HALWD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Hwa RFC intein
gi|109627268|emb|CAJ53758.1| replication factor C small subunit [Haloquadratum walsbyi DSM
16790]
Length = 649
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 155/254 (61%), Gaps = 3/254 (1%)
Query: 55 LLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 114
+ G +++ +LELNAS++RGID VR++IK FA + + H+I+ LDEADS+TD AQ
Sbjct: 395 VYGDDWQNNLLELNASDERGIDVVRDRIKNFA--RSSFGGYDHRIIFLDEADSLTDDAQS 452
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME +++ TRF L+CN S KII+PIQSRCA+ R++ L++ + + +I ENI
Sbjct: 453 ALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIE 512
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
T DGL+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ ++
Sbjct: 513 LTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEETVYTITSTARPEDIETMVTAAID 572
Query: 235 GNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
G+ + + L G A DII + R A LD+ E + +++ +G RI+ G
Sbjct: 573 GDFTTARSQLQTLLVDTGMAGGDIIDQLHRTAWNLDLDEETTVRLLERVGEADYRITVGA 632
Query: 294 NSLLQLSGLLARLC 307
N +QL LLA L
Sbjct: 633 NEQVQLEALLASLA 646
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
IEKYRP T +I G EDTV+RL+ + ++P+++ +GP GVGK T
Sbjct: 18 IEKYRPATLENIYGQEDTVDRLQSYIDRDDLPHLLFAGPAGVGKCVT 64
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 175/307 (57%), Gaps = 5/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP++ +++ +E ++ + + +P++++ GPPG GKT+TIL AR L P+
Sbjct: 13 VEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARKLYTPAQ 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA T+ K++ILDEAD+MT AQ ALRR
Sbjct: 73 FNSMVLELNASDDRGIGIVRGQILSFASTG-TMYKSAFKLIILDEADAMTIDAQNALRRI 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L Q++ ++ + E EN+ T DG
Sbjct: 132 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLKVTEDG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ + GDMR+ ++ LQST +G V E V+ P P + ++ + +
Sbjct: 192 KQALITLSGGDMRKVISVLQSTWFAYGAVNEENVYNCVGHPLPRDITSIVNWLLNESYDT 251
Query: 240 SYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
YK I L KL G A +DI+ + +D P+ L ++ ++ + R++ G +
Sbjct: 252 CYKKIQEL-KLNKGLALQDILTEVHSYVIKIDFPDQLFTDLLCKMAEIEKRLASGCRDNI 310
Query: 298 QLSGLLA 304
QL+ L++
Sbjct: 311 QLNSLIS 317
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ SD+V +ED V ++ F +P+++ GPPG GKT+ IL +R + G +
Sbjct: 18 VEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFGETS 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK-VTLPPG--RHKIVILDEADSMTDGAQQALR 117
+VLELNAS+DRGID R +I FA K + + G K++ILDEAD+MT+ AQ ALR
Sbjct: 78 NSSVLELNASDDRGIDVARGRILNFASTKRIAIQAGTASFKLIILDEADAMTNDAQNALR 137
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R +E +++ RF L CN KII +QSRC R+ L Q+L ++ + ++E++ +
Sbjct: 138 RIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVVKEESLEMSP 197
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
DG +A++ A+GDMR+ LN LQS F + ++ P P + L + + ++
Sbjct: 198 DGAKALLTLAKGDMRRILNILQSCSMAFPVINESNIYACTGHPPPSDISLALESLLNDDL 257
Query: 238 KDSYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ +Y+ IH + G + DI+ + + L+I +K+ ++ ++ + R+ G +
Sbjct: 258 QKAYQTIHVQLQTTKGLSLIDILTELHLLVHRLEISNRVKVKLLIKLADAEHRLLSGTSE 317
Query: 296 LLQLSGLLA 304
+QL ++A
Sbjct: 318 KIQLGAVVA 326
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G VT + + + + +
Sbjct: 219 HVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G+A ++ + V D + + K I +++ V
Sbjct: 279 AACQSGSFDKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLISLCA 354
>gi|385804979|ref|YP_005841379.1| replication factor C small subunit [Haloquadratum walsbyi C23]
gi|339730471|emb|CCC41810.1| replication factor C small subunit [Haloquadratum walsbyi C23]
Length = 649
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 155/254 (61%), Gaps = 3/254 (1%)
Query: 55 LLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 114
+ G +++ +LELNAS++RGID VR++IK FA + + H+I+ LDEADS+TD AQ
Sbjct: 395 VYGDDWQNNLLELNASDERGIDVVRDRIKNFA--RSSFGGYDHRIIFLDEADSLTDDAQS 452
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME +++ TRF L+CN S KII+PIQSRCA+ R++ L++ + + +I ENI
Sbjct: 453 ALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIE 512
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
T DGL+A+V+ A GDMR+A+N+LQ+ V E V+ + P ++ M+ ++
Sbjct: 513 LTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEETVYTITSTARPEDIETMVTAAID 572
Query: 235 GNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
G+ + + L G A DII + R A LD+ E + +++ +G RI+ G
Sbjct: 573 GDFTTARSQLQTLLVDTGMAGGDIIDQLHRTAWNLDLDEETTVRLLERVGEADYRITVGA 632
Query: 294 NSLLQLSGLLARLC 307
N +QL LLA L
Sbjct: 633 NEQVQLEALLASLA 646
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
IEKYRP T +I G EDTV+RL+ + ++P+++ +GP GVGK T
Sbjct: 18 IEKYRPATLENIYGQEDTVDRLQSYIDRDDLPHLLFAGPAGVGKCVT 64
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 176/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 99 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 157 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 217 HVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGLF 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLR 288
C G+ ++ +L G+A ++ + V D + + K I +++ V
Sbjct: 277 AACQSGSFDKLEGVVKNLIDEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKC 336
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 337 LADGADEHLQLISLCA 352
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 167/308 (54%), Gaps = 9/308 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ + L + ++P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQ------QKVTLPPGRHKIVILDEADSMTDGAQ 113
+K VLELNAS+DRGI+ VR KIK FA +K P +KI+ILDEADSMT+ AQ
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDAQ 131
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC +E +
Sbjct: 132 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEGL 191
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL-AVKEMLLNC 232
+ L + +QGD+R+A+ LQS FG + P VK +L C
Sbjct: 192 NLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSLSSSDLISVSGVIPEDVVKSLLAAC 251
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISE 291
G + K + ++ GY ++ V + DI + K I +++G + +
Sbjct: 252 KSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVSADDIQDDQKARICKKLGETDKCLVD 311
Query: 292 GVNSLLQL 299
G + LQL
Sbjct: 312 GADEYLQL 319
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 172/310 (55%), Gaps = 17/310 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIV E+ V+ LK +G++P++I GPPG GKT+ L L R L G F
Sbjct: 11 VEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFGDDF 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+ V ELNAS++RGID VR+ IK FA + +P G+ KIVILDEADSMT AQ ALRR
Sbjct: 71 RLRVKELNASDERGIDAVRSSIKEFAS--LAVPNGKIPFKIVILDEADSMTSAAQNALRR 128
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS-HTN 177
+E YS+ TRF + CN KII+PI SRCA R+ L ++ ++ +I E +N+S +
Sbjct: 129 IIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQNLSVDSE 188
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFG---HVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
D E +V + GD+R+A+ QS + +T+E + + P+P V+ C+
Sbjct: 189 DTYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAPNPADVENYFKTCLS 248
Query: 235 GNMKDSYKIIHHLYKLGYAPEDIIGNIFR-----VAKTLDIPEPLKLSIIQEIGNVHLRI 289
D I + L YA D IG IF + KT +IPE K +I +I I
Sbjct: 249 A---DWDTIENATIDLVYAGYD-IGQIFEILINLIVKTNEIPEAKKPELILKIAQADGAI 304
Query: 290 SEGVNSLLQL 299
+ QL
Sbjct: 305 INRADPQFQL 314
>gi|374635888|ref|ZP_09707477.1| transcriptional regulator, XRE family [Methanotorris formicicus
Mc-S-70]
gi|373560850|gb|EHP87100.1| transcriptional regulator, XRE family [Methanotorris formicicus
Mc-S-70]
Length = 1300
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 158/247 (63%), Gaps = 6/247 (2%)
Query: 67 LNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEIYS 124
L+ S++RGID +R K+K FA+ K P G KI+ LDE+D++T AQ ALRRTME YS
Sbjct: 1056 LHNSDERGIDVIRTKVKDFARTK---PIGDVPFKIIFLDESDALTSDAQNALRRTMEKYS 1112
Query: 125 NTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV 184
+ RF L+CN KII PIQSRCA+ R++ L ++ K+ EI EKE ++ T +GLEAI+
Sbjct: 1113 DICRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDVVKKLKEIAEKEGLTLTPEGLEAII 1172
Query: 185 FTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKII 244
+ ++GDMR+A+N LQ+ + + E V+KV P +K+M+ +EG ++ +++
Sbjct: 1173 YVSEGDMRKAINVLQTAASVSKEIDEEVVYKVSSRARPEEIKKMIELALEGKFIEARELL 1232
Query: 245 HHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
+ L G + ED+I IFR +L+I E K+ +++ +G RI EG N +QLS LL
Sbjct: 1233 YKLMVDWGMSGEDVILQIFREIPSLNIDERKKVELVEALGECDYRIVEGANERIQLSALL 1292
Query: 304 ARLCIVG 310
A++C +G
Sbjct: 1293 AKMCNMG 1299
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRP+T ++VG+E+ V+RLK + ++P+++ SGPPGVGK T
Sbjct: 6 VEKYRPKTLDEVVGHEEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 52
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 178/316 (56%), Gaps = 15/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ +D++ ++D + + S +P+++ GPPG GKT+TI +AR L G ++
Sbjct: 30 VEKYRPKSINDLIAHDDIIA-----TKSNTLPHLLFYGPPGTGKTSTIQAIARKLYGENY 84
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV----TLPPGRHKIVILDEADSMTDGAQQAL 116
VLELNAS+DRGID VR +IK FA T+P +K++ILDEADSMT+ AQ AL
Sbjct: 85 SRMVLELNASDDRGIDVVREQIKTFASSMFFFNSTVP---YKLIILDEADSMTNIAQTAL 141
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RR +E Y+ TTRF + CN KII +QSRC R+ L D+ ++ EI + EN+
Sbjct: 142 RRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRFKPLPDSATEERLKEILKIENVQID 201
Query: 177 NDGLEAIVFTAQGDMRQALNNLQS-THNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
+G++A++F GDMR++LN LQS + + G + E ++K P P +L
Sbjct: 202 EEGMKAVLFLGDGDMRKSLNILQSVSMSTNGLIGEEQIYKCTGNPSPTDFHMVLEWLFNE 261
Query: 236 NMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGV 293
+ + ++ I L K G + DII + D+P L + + ++ +S G
Sbjct: 262 DFQTAFNNITDLKKKKGLSLTDIISYFPHFLMEMDDMPSILLCKALSHLSDIEFNLSNGA 321
Query: 294 NSLLQLSGLLARLCIV 309
+ LQL L+ I+
Sbjct: 322 SEKLQLGSLVGSFQIL 337
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 184/319 (57%), Gaps = 6/319 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP+ F ++V E+ RL+ F SGN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ TRF L N +II+PI SRCA+ R++ + + ++ I + E I +D
Sbjct: 124 IMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKSEGIELRDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
++ I ++GDMR+A+N LQ V A V P V E+ + G++
Sbjct: 184 AIDLIYEVSEGDMRKAINLLQVAAATSNVVDANAVASATTMIRPADVIELFNLALNGDVA 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ +Y G A D I R + + + +K I + + +V R+++G + L
Sbjct: 244 KAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLADVDYRLTQGSDEEL 303
Query: 298 QLSGLLARLCIVGSKNKKT 316
QL LL++L +G + ++T
Sbjct: 304 QLLYLLSKLGAIGKRARQT 322
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+T D+ E V L+ +GN+P+ + GPPG GKTT L +A+ L GP
Sbjct: 19 VEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQLYGPEL 78
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP-PGR----HKIVILDEADSMTDGAQQ 114
+K V ELNAS++RGI VR+K+K FA V P PG +KI+ILDEAD+MT AQ
Sbjct: 79 YKQRVKELNASDERGISVVRDKVKTFASLAVGAPAPGYPSPPYKILILDEADAMTTDAQS 138
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
A+RR ME YS TRF L CN KII+PI SRCA R+ L + +++ I E+E++
Sbjct: 139 AMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYIAEQESLE 198
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGF-GHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
++D A + GDMR+A+ LQS F G V A + +V + + +L C
Sbjct: 199 LSDDVFPACSKHSGGDMRKAITLLQSAARLFSGKVDAAGIVEVAGYIPDVKLTTLLDLCK 258
Query: 234 EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
G+ + + + + GY+ I+ + + D + +K I ++G V +++G
Sbjct: 259 SGDFDKAQAHMEDILRDGYSGIKIMDQLSDIVLEADCSDEIKGDIFMKMGEVDRALAQGA 318
Query: 294 NSLLQLSGLLA 304
+ LQL+ +++
Sbjct: 319 DEGLQLATVVS 329
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 171/311 (54%), Gaps = 3/311 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + ++V ++D + L+ + +P+ ++ GPPG GKT+TIL A+ + G +
Sbjct: 428 VEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYGAGY 487
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K LELNAS+DRGID VR++IK FA + G K++ILDEAD MT AQ ALRR +
Sbjct: 488 KSMTLELNASDDRGIDVVRDQIKEFAGTRRLFSKG-IKLIILDEADMMTKDAQFALRRVI 546
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF L CN + KII +QSRC R+ L Q+ +V +I +EN++
Sbjct: 547 EKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRRENVAIGTKAT 606
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGF-GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ +GDMR+ LN LQ+ + G VT E +F V P P V + + +
Sbjct: 607 DALLELGKGDMRRVLNVLQAAAVAYPGEVTYESLFLVTGNPLPDHVDAIFASLLNDTFDA 666
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+ ++ L K GYA D++ I +P K ++ ++ ++ R + + LQ
Sbjct: 667 ARTLLGDLCKTQGYALPDLLTRINAKVVAAKLPNAAKAHVLTKLADIEYRCAFATTTELQ 726
Query: 299 LSGLLARLCIV 309
LS L++ +
Sbjct: 727 LSSLVSAFVVA 737
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 177/313 (56%), Gaps = 10/313 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+T ++ ++ V LK ++PN++ GPPG GKT+TIL +R L G
Sbjct: 31 VEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRELFGTDM 90
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI VR+K+K FAQ P G+ KI+ILDEADSMT AQ
Sbjct: 91 YRSRVLELNASDERGIQVVRDKVKKFAQTAAGGIRPDGKPCPPFKIIILDEADSMTYDAQ 150
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S T+F L CN +IIEP+ SRC+ R+ L+ K+ EICE ENI
Sbjct: 151 AALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLREICEAENI 210
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + LEAI+ ++GDMR+++ LQS H + E V+++ + +++
Sbjct: 211 NCGEEALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAGVIPDKMIDDLIQA 270
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C G+ + + + L + GY+ ++ IF + ++ + K +I + + + R+
Sbjct: 271 CYGGSYEKLDEKVQELLQGGYSASQVVNQIFDIIVDRGELTDKQKSAIAERLAVIDKRLC 330
Query: 291 EGVNSLLQLSGLL 303
+G + LQ+ L
Sbjct: 331 DGADEGLQIMDLF 343
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 182/310 (58%), Gaps = 8/310 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP + +++V +++ ++ L + +P+++ GPPG GKT+TIL AR+L P
Sbjct: 18 VEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYTPKQ 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH-----KIVILDEADSMTDGAQQ 114
VLELNAS+DRGI VR +I FAQ TL ++ K+VILDEAD+MT AQ
Sbjct: 78 LSSMVLELNASDDRGIGIVREQIINFAQTS-TLNVDKNQSSVPKLVILDEADAMTKDAQS 136
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR +E +++ RF + CN KII IQSRC LR+ L++ Q+L ++ I E+++
Sbjct: 137 ALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVRVESLT 196
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
T DG +A++ A+GDMR+ +N LQST F V V++ P P V++++ +
Sbjct: 197 VTEDGQKALLNLAEGDMRRVINILQSTAMAFKTVDERNVYRCLGYPLPTDVEKIVKILLN 256
Query: 235 GNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+M+D+Y I + + +A DI+ ++ L +P L ++ + ++ +S+G
Sbjct: 257 DSMEDAYTRIEEIRNERAFALSDILNSMHDFIFRLVVPPELLSRLLICMADIEYHLSQGC 316
Query: 294 NSLLQLSGLL 303
+ LQL L+
Sbjct: 317 SDRLQLGALI 326
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 179/321 (55%), Gaps = 12/321 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+V ++D ++ + F +P+++ GPPG GKT+TIL A+ + P
Sbjct: 13 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA + G K++ILDEAD+MT+ AQ ALRR
Sbjct: 73 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG-PKLIILDEADAMTNDAQNALRRI 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ RF + CN KII +QSRC R+ L Q++ ++ EI E + + G
Sbjct: 132 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL-----AVKEMLLNCVE 234
++A++ + GDMR+ LN LQST + VT + V+ HPL ++ LLN E
Sbjct: 192 MKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG--HPLRADIDSILNWLLN--E 247
Query: 235 GNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ +K I L G A DI+ + + + + +P + +S++ ++ + R++ G
Sbjct: 248 NDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGS 307
Query: 294 NSLLQLSGLLARLCIVGSKNK 314
+ ++L+ L+A I + K
Sbjct: 308 SERVELAALIASFQIARDQVK 328
>gi|448401395|ref|ZP_21571631.1| Replication factor C small subunit [Haloterrigena limicola JCM 13563]
gi|445666658|gb|ELZ19317.1| Replication factor C small subunit [Haloterrigena limicola JCM 13563]
Length = 1032
Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats.
Identities = 111/282 (39%), Positives = 167/282 (59%), Gaps = 10/282 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+G+VP ++ TT +AR + +++ LELNAS+ RGID VR++IK FA+
Sbjct: 756 AGDVPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFAR 808
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ H+I+ LDEAD++T AQ ALRRTME +SN TRF L+CN S +II+PIQSRC
Sbjct: 809 S--SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 866
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ +L + + ++V EI E+I+ T+DG++A+V+ A GDMR+A+N LQ+
Sbjct: 867 AVFRFTELGEDAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMGET 926
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYK-LGYAPEDIIGNIFRVAK 266
V E VF + P V+ M+ + G+ + + L G A D+I + R A
Sbjct: 927 VDEETVFAITATARPEEVEAMVEYAIGGDFTAARAALEELLTDRGLAGGDVIDQLHRSAW 986
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308
DIPE + +++ +G V RI+EG N LQL +LA L +
Sbjct: 987 EFDIPEQATVRLLERLGEVDYRITEGANERLQLEAMLASLAL 1028
Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
IEKYRP+ +I G+E+ V RLK + ++P+++ +GP G GK T
Sbjct: 22 IEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKCVT 68
>gi|160331486|ref|XP_001712450.1| rfc2 [Hemiselmis andersenii]
gi|159765898|gb|ABW98125.1| rfc2 [Hemiselmis andersenii]
Length = 319
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 170/305 (55%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKD 62
KYRP ++ ++ ++ + + +PNII+SGPPG GKT+ I CLAR + G F+
Sbjct: 12 KYRPYLLKELSIHKSLKKKFILMTKKVILPNIILSGPPGSGKTSGIFCLARKIFGKDFQK 71
Query: 63 AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI 122
VL LN S++RG++ +R KIK F Q+K+ + K+VILDEAD MT AQ+ALRR MEI
Sbjct: 72 HVLCLNTSDNRGVEIIREKIKTFCQKKLKNENLKKKLVILDEADFMTITAQEALRRIMEI 131
Query: 123 YSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEA 182
+S+ RFAL CN KII P+QSRCA+LR+ K+ + LL+++I I E + GLEA
Sbjct: 132 FSDKVRFALICNFPSKIIGPLQSRCAILRFKKIKETFLLNRLIFILNNEGVFFDIAGLEA 191
Query: 183 IVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYK 242
+F GD+RQ LN Q FG++T + + K C + E N+ S +
Sbjct: 192 TIFLTNGDIRQILNMSQIIVKTFGNLTQKAIKKFCSLSNSTVFLEFFSAFSNKNVYFSQE 251
Query: 243 IIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGL 302
++ G + I IF K + I E K+ I + + L S+ VN + L L
Sbjct: 252 LLLDCINNGSNIIETIQRIFLFCKKIHINEKGKIKIFDILCHFRLICSQNVNPSVFLMFL 311
Query: 303 LARLC 307
+LC
Sbjct: 312 NQKLC 316
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 170/321 (52%), Gaps = 14/321 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA Q++ P +KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIIILDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L + + ++++ IC +E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMSNRILHICNEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL-N 231
++ + L + +QGD+R+A+ LQ FG + P V E +
Sbjct: 192 LTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAIPREVTEAIYAA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRIS 290
C G+ + K ++ + GY ++ +F V + DI + K I + + +
Sbjct: 252 CKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARICKSLATADKCLV 311
Query: 291 EGVNSLLQL----SGLLARLC 307
+G + LQL S + LC
Sbjct: 312 DGADEYLQLLDVVSNTMRSLC 332
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DI+ ++ V + +P+++ GPPG GKT+ I+ +AR + G F
Sbjct: 35 VEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKIYGKHF 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
VLELNAS+DRGID VRN+IK FA K G K++ILDEADSMT+ AQ +LRR +
Sbjct: 95 SSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGA-KLIILDEADSMTNDAQFSLRRVI 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF L CN KII +QSRC R+ L Q+ +V +I + E I T+ G
Sbjct: 154 EKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVKQIRDLEKIDLTDGGF 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A++ +GDMR+ LN LQ+ + V E V+ P P + + + + ++
Sbjct: 214 DALMQLGKGDMRRILNILQAASLAYATVNEENVYLCTGNPVPEDIAAICHSLWNDSFAEA 273
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ GYA DI+ ++ +D+P + I E+ + R++ G + LQL
Sbjct: 274 VSKCQAIQMTKGYATTDIMKEVYHNTTEVDLPAKCQHFIYDELAKLEHRLATGASEKLQL 333
Query: 300 SGLLA 304
L++
Sbjct: 334 ISLVS 338
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ + L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFSFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVNSLLQLSGLLA 304
++G + LQL L A
Sbjct: 339 ADGADEHLQLISLCA 353
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 181/334 (54%), Gaps = 32/334 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F S +P++++ GPPG GKT+TIL LAR + G +
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGSKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK---VTLPP-----GRHKIVILDEADSMTDG 111
+ VLELNAS+DRGID VR +IK FA K T P G K++ILDEAD+MT
Sbjct: 108 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSA 167
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR ME Y+ TRF + N + K+ + SRC R++ L + + V + EKE
Sbjct: 168 AQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRLVDTVIEKE 227
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH-----------------NGFGHVTAEYVF 214
+ D ++++V ++GDMR+ALN LQ+ H +T E ++
Sbjct: 228 QVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDTSEQPQDRETITEETIY 287
Query: 215 KVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDI 270
PHP +K +L + + D ++ + L G A DII + ++L++
Sbjct: 288 TCIAAPHPADIKMILETLL--STSDVTSCLNTVQTLKSNKGLALADIISALSTELQSLEV 345
Query: 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
P +++S I+ + +V R+S G + +Q G++
Sbjct: 346 PAQVRVSWIEGLADVEWRLSGGGSESIQTGGMIG 379
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 137/211 (64%), Gaps = 11/211 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+T D+ E TV L+ +S N+P+++ GPPG GKT+TIL LAR L GP +
Sbjct: 27 VEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPEN 86
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK----------VTLPPGRHKIVILDEADSMT 109
F+ VLELNAS++RGI VR KIK FA+Q P +KI+ILDEADSMT
Sbjct: 87 FRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADGTVYPCPPYKIIILDEADSMT 146
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRR ME+Y+ TRF L CN +IIEP+ SRC+ R+ L A +++ ++
Sbjct: 147 QDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSARIAQVAS 206
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQS 200
EN+ T + ++A++ T+QGD+R+A+ LQS
Sbjct: 207 AENVPVTPETVDALISTSQGDLRRAITYLQS 237
>gi|402471008|gb|EJW04947.1| hypothetical protein EDEG_00064 [Edhazardia aedis USNM 41457]
Length = 312
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 179/315 (56%), Gaps = 27/315 (8%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ ++++GN + V L ++SG +P+++ GPPG GKTTTI LA L G ++K
Sbjct: 7 EKYRPKALTEVLGNSEVVRSLSKIAASGILPHMLFYGPPGTGKTTTIRALAFQLYGLNYK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+LELNAS++RGIDTVRN IK FAQ K++ILDEADSM+ AQ +RR +E
Sbjct: 67 SNILELNASDERGIDTVRNTIKSFAQ--TISFKNTMKLIILDEADSMSRDAQNCMRRIIE 124
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+S+ RF L N S KII IQSRC R+ + D+ + ++ IC KENI + DG+
Sbjct: 125 DFSSNVRFCLIANYSSKIIPAIQSRCTKFRFAPVKDSNIAQRIENICIKENIKFSKDGIH 184
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVC--------DEPHPLA----VKEML 229
AIV GDMR+ +N+L+ N +G + V +C DE + + +++L
Sbjct: 185 AIVRYCNGDMRKIMNDLEGISNAYGLIDEFSVNSICGGTSEKIFDEFYKILFTNDFEKIL 244
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
L+C +KD Y I + +I I + DI + K+ I++ + ++ R+
Sbjct: 245 LSC--QVIKDKYSI---------DCDALITYISGLIVKSDILK--KMQILKILSDIQYRL 291
Query: 290 SEGVNSLLQLSGLLA 304
S G + +Q++ ++
Sbjct: 292 SLGCSQEIQMAAFIS 306
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 155/278 (55%), Gaps = 9/278 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L + + P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA ++ P KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
+S + L + +QGD+R+A+ LQS FG +T+ + V V ++
Sbjct: 192 LSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD 269
C G+ + K + ++ GY II +F + D
Sbjct: 252 CKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEAD 289
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 151/269 (56%), Gaps = 11/269 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ S++ E+ V L + N+P+++ GPPG GKT+T L +AR L GP
Sbjct: 7 VEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPEL 66
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP-PGR----HKIVILDEADSMTDGAQQ 114
K VLELNAS++RGI VR K+K FA V P PG +K++ILDEADSMT AQ
Sbjct: 67 MKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEADSMTQDAQN 126
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME YS TRF CN +IIEP+ SRCA R+ L A + ++ ICE+E+++
Sbjct: 127 ALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERESVT 186
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEPHPLAVKEM----L 229
L+ + + GD+R+A+N LQS G GHV + V + P V +
Sbjct: 187 LGPGALDTLSAVSGGDLRRAINTLQSAARLGAGHVDRATLLDVSGQVAPEVVSSLAAACR 246
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDII 258
G K + ++ GYA + ++
Sbjct: 247 ATGAAGRFGALQKQVQNIIAEGYAAQQVL 275
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 173/316 (54%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP++ ++ ++ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 42 VEKYRPKSVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 101
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 102 FRLRVLELNASDERGIQVIREKVKNFAQLTVSGSRSDGKLCPP--FKIVILDEADSMTSA 159
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D +++ I EKE
Sbjct: 160 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLNITEKE 219
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T E + + + +
Sbjct: 220 NVKISSEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVITDIAGVIPSETIDGVF 279
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQE-IGNVHLR 288
C G+ ++ L G+A ++ + V D + SII E +
Sbjct: 280 AACQSGSFDKLETVVKDLIIEGHAATQLVNQLHDVVVENDTLSDKQKSIITEKLAEADKC 339
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 340 LADGADEHLQLISLCA 355
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 175/313 (55%), Gaps = 15/313 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+ KYRP+T ++ ++ V+ LK +GN+P+++ GPPG GKT+TIL +A L GP
Sbjct: 18 VNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTGKTSTILAVAMDLFGPEL 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--------PPGRHKIVILDEADSMTDG 111
+KD VLELNAS++RGI+ VR KIK FA V+ P K+++LDEADSMT
Sbjct: 78 YKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPAAAFKLIVLDEADSMTHD 137
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E S TTRF L CN +IIEP+ SRCA R+ L D ++ ++ I E
Sbjct: 138 AQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSLNDTAMIERLRYIASSE 197
Query: 172 NISHTNDGL-EAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEM 228
++ D + +AI + GD+R+A+ LQS++ +G +T + ++ + P + E
Sbjct: 198 SMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPDNIYNISGTVPPKLI-ET 256
Query: 229 LLNCVEGNMKDSYKI-IHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVH 286
L+N + N D + + L GY I+ IF +V + K I +IG+V
Sbjct: 257 LINTCKSNSYDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSFSDKQKALIAMKIGDVD 316
Query: 287 LRISEGVNSLLQL 299
+ +G LQL
Sbjct: 317 RNLVDGSEEFLQL 329
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 179/316 (56%), Gaps = 18/316 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V + V L+ G++PN+++ GPPG GKT+TIL +R + G F
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMF 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
KD +LELNAS++RGI+ VR KIK F+Q + P G+ KI+ILDEADSMT AQ
Sbjct: 93 KDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQS 152
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L + +++ ++ ICE E +
Sbjct: 153 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVK 212
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHV--TAEYVFKVCDEPHPLAVKEMLL 230
+D ++IV + GD+R+A+ LQS + G H+ TA+ +F++ +++ L
Sbjct: 213 IEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTAD-LFEMSGVIPEYYLEDYLE 271
Query: 231 NCVEGNMKDSYKIIHHL----YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVH 286
C GN + + + + Y +G E + I D P K +I ++G
Sbjct: 272 VCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLND---PQKATICDKLGECC 328
Query: 287 LRISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 329 FRLQDGGSEYLQIMDL 344
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 174/319 (54%), Gaps = 10/319 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T ++V +ED + + SGN+P+++ GPPG GKTTTI A L G
Sbjct: 21 VEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGKDR 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIK--------MFAQQKVTLPPGRHKIVILDEADSMTDG 111
+ VLE+NAS+DRGID VR +++ FA K+VILDEAD M+
Sbjct: 81 IRANVLEMNASDDRGIDVVRQQVREFSSTSSFYFASAPAAPTIAAFKLVILDEADQMSGD 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + + +L ++ + ++E
Sbjct: 141 AQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLPRLKFVAQEE 200
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ T++GL A + GD+R+ LN +Q++ G +T E V++V P P V+ ++ +
Sbjct: 201 GVRFTDEGLVAAFRLSNGDLRRCLNTMQASAMSAGEITEESVYRVTGNPTPADVRGIVED 260
Query: 232 CVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + S+ K+ + + G + D++ + + +D+P+ K ++ ++ +V +
Sbjct: 261 MIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAA 320
Query: 291 EGVNSLLQLSGLLARLCIV 309
G +SG+L +V
Sbjct: 321 GGAKETTCISGILGAFQLV 339
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 176/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G VT + + + + +L
Sbjct: 219 HVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGLL 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + +L G+A ++ + V + ++ + K I +++ V
Sbjct: 279 AACQSGSFDKLEAAVKNLIDEGHAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLMSLCA 354
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 175/320 (54%), Gaps = 9/320 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP SD+ ++D ++ + +S +P +++ GPPG GKT+TIL +A+ L GP F
Sbjct: 34 VEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLLLYGPPGTGKTSTILAVAKELYGPQF 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LELNAS+DRGID VRN+I FA K++ILDE DSMT AQ ALRR +
Sbjct: 94 SQMTLELNASDDRGIDVVRNEISAFASTMRFGSNAGFKLIILDECDSMTKDAQFALRRII 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF L N K+I +QSRC R++ L + +V + +EN+ T+D +
Sbjct: 154 EKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGPNAVKDRVQFVVRQENLQITDDAI 213
Query: 181 EAIVFTAQGDMRQALNNLQSTH---NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
+A+ GDMR+ LN LQS+ G G + A V+ +P P ++ + + N
Sbjct: 214 DAVTRLGAGDMRRTLNILQSSFLSKEGDGPIDANSVYATTGQPRPEDIEAIAGVLLNSNF 273
Query: 238 KDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
K++ K+ + G A DI+ + L +P+ + +++ ++ +V R++ +
Sbjct: 274 KEAVAKVAAIKQERGLALADIVRLLVEYVFRLHMPQLARANLVSDMADVEYRLAYVTHER 333
Query: 297 LQLSGLL-----ARLCIVGS 311
LQL L+ AR IV +
Sbjct: 334 LQLMALVGAFANAREAIVAA 353
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 178/321 (55%), Gaps = 12/321 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
++KYRP+ SD+ + V L+ + N+P+++ GPPG GKTT L + + L GP
Sbjct: 27 VDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQLYGPEL 86
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKV-------TLPPGRHKIVILDEADSMTDGA 112
K VLELNAS++RGI VR KIK FA V PP +KI+ILDEADSMT+ A
Sbjct: 87 GKKRVLELNASDERGISVVRGKIKSFASTTVGEGVPGYPCPP--YKILILDEADSMTNDA 144
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRR ME YS TRF + CN KII+PI SRCA R+ L + ++ I + EN
Sbjct: 145 QSALRRMMETYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINFIAKGEN 204
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
+ L+A+ + GDMR+A+ LQS + FG +T + + +V ++E+L
Sbjct: 205 LQLAEGTLQALEHVSAGDMRKAITLLQSAASLFGPELTGDRIREVAGVIPDEKIEELLQL 264
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNI-FRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
CV G+ + S + + K G+ I+ + +A + + + +K I ++G V ++
Sbjct: 265 CVAGDSQKSQALAEDILKDGFPCLQILEQFGYYLADSDLLEDEMKAEICLKLGEVEKKLV 324
Query: 291 EGVNSLLQLSGLLARLCIVGS 311
+G + LQLS ++ IV S
Sbjct: 325 DGADEWLQLSHCISIATIVCS 345
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 171/300 (57%), Gaps = 3/300 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP + D++ + + + ++ F +P+++ GPPG GKT+TIL +A+ L P
Sbjct: 13 VEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPKE 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR I FA + G K+VILDEAD+MT+ AQ ALRR
Sbjct: 73 FNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG-FKLVILDEADAMTNDAQNALRRV 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF CN KII +QSRC R+ L + Q++ ++ + +EN+ T DG
Sbjct: 132 IEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFVVREENVDMTEDG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ A+GDMR+ +N LQST VT E V+ P ++ ++ + +
Sbjct: 192 KKALITLAKGDMRRVINILQSTSMAHEKVTEENVYLCTGHPLRTDIENIVNWMLNEDFTA 251
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
++ I+ L L G A DI+ + ++ P+ +++ ++ ++ ++ R++ G + LQ
Sbjct: 252 AFNHINQLKTLKGLALLDILLEVHTYVHRIEFPQKVRIYLLDKMSDIEYRLAAGTSEKLQ 311
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 151/269 (56%), Gaps = 11/269 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ S++ E+ V L + N+P+++ GPPG GKT+T L +AR L GP
Sbjct: 7 VEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPEL 66
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP-PGR----HKIVILDEADSMTDGAQQ 114
K VLELNAS++RGI VR K+K FA V P PG +K++ILDEADSMT AQ
Sbjct: 67 MKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEADSMTQDAQN 126
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME YS TRF CN +IIEP+ SRCA R+ L A + ++ ICE+E+++
Sbjct: 127 ALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERESVT 186
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEPHPLAVKEM----L 229
L+ + + GD+R+A+N LQS G GHV + V + P V +
Sbjct: 187 LGPGALDTLSAVSGGDLRRAINTLQSAARLGGGHVDRATLLDVSGQVAPEVVSSLAAACR 246
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDII 258
G K + ++ GYA + ++
Sbjct: 247 ATGAAGRFGALQKQVQNIIAEGYAAQQVL 275
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 183/349 (52%), Gaps = 38/349 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+ E TV L+ + N+P+++ GPPG GKT+TIL LA+ L GP
Sbjct: 36 VEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGPEM 95
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---------KIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ ++T PP + KI+ILDEADSMT
Sbjct: 96 MKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREKYPCPPFKIIILDEADSMTQ 155
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTMEIYS TRF L CN +II+P+ SRC+ R+ L + ++ EI
Sbjct: 156 DAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAMKRLEEIAAA 215
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL 230
E++ + ++A+V ++GD+R+A+ LQS G A+ DE + K + +
Sbjct: 216 ESVPLGDGAIDALVRCSEGDLRKAVTFLQSAARLIG-AGAQVKDGDGDEDMDVDKKAVTV 274
Query: 231 NCVE------------------------GNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
+E G+ K++ + G++ I+ +++V
Sbjct: 275 KIIEDIAGVIPGATIDELVAALRPRGSNGSYSSVSKVVEDMVADGWSAGQIVSQLYQVI- 333
Query: 267 TLD--IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKN 313
T D IP+ K I+ V R+ +G + L + L R+ + S+
Sbjct: 334 TFDETIPDVQKNKIVMVFSEVDKRLLDGADEHLSILDLSMRISAIMSEK 382
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 170/308 (55%), Gaps = 15/308 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ ++ V L +G+ P+++ GPPG GKTTT L +A L G
Sbjct: 12 VEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFG--- 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGAQ 113
VLELNAS+DRGI+ VR KIK FA Q K P KI++LDEADSMT+ AQ
Sbjct: 69 ---VLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQ 125
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ I ++E +
Sbjct: 126 NALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGL 185
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLNC 232
+ L + F + GD+R+A+ LQS FG +++E + V V+ +L C
Sbjct: 186 CLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALLKAC 245
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRISE 291
GN + K +++ GY ++ +F + + D+ + K I +++G + +
Sbjct: 246 KSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVD 305
Query: 292 GVNSLLQL 299
G + LQL
Sbjct: 306 GADEYLQL 313
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 166/309 (53%), Gaps = 16/309 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ E+ V L + + P+++ GPPG GKTTT L +A L G
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG--- 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGAQ 113
VLELNAS+DRGI+ VR KIK FA ++ P KI+ILDEADSMT+ AQ
Sbjct: 69 ---VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 125
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E +
Sbjct: 126 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGL 185
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLNC 232
S + L + +QGD+R+A+ LQS FG +T+ + V V ++ C
Sbjct: 186 SLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTAC 245
Query: 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--DIPEPLKLSIIQEIGNVHLRIS 290
G+ + K + ++ GY II +F + DI + K I + + R+
Sbjct: 246 KSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLV 305
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 306 DGADEYLQL 314
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ G + V+ ++ F G +P+++ GPPG GKT+TI+ LAR + GP +
Sbjct: 11 VEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYGPKY 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS+DRGID VRN+IK FA G K++ILDEAD+MT AQ ALRR +
Sbjct: 71 KNMVLELNASDDRGIDVVRNQIKDFASTMQIFSKG-FKLIILDEADAMTSVAQNALRRII 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N S K+ + SRC R+ + + ++ + KE I+ D +
Sbjct: 130 EKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKEKITIKPDAI 189
Query: 181 EAIVFTAQGDMRQALNNLQSTH----NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
E+++ +QGDMR+ALN LQS N + E ++ P P V+ +L + ++ +
Sbjct: 190 ESLLTLSQGDMRRALNVLQSCKASLDNPDDEIDEEMIYNCIGAPQPKDVETVLDSILKDD 249
Query: 237 MKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+Y + ++ G A D++ + ++ + K+ I++ + V IS+G N
Sbjct: 250 WTTAYLTMDKFKRVKGLALIDLLEGFVGILNKYELDKQTKIKILKGLSEVEYGISKGGND 309
Query: 296 LLQLSGLLA 304
+ S ++
Sbjct: 310 KINSSAIIG 318
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 18/309 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ ++ V L + N P+++ GPPG GKTTT L +A L G
Sbjct: 12 VEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFG--- 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFA---------QQKVTLPPGRHKIVILDEADSMTDG 111
VLELNAS+DRGI+ VR KIK FA Q PP +KI+ILDEADSMT+
Sbjct: 69 ---VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP--YKIIILDEADSMTED 123
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC++E
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEE 183
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLL 230
++ ++ L + +QGD+R+A+ LQ FG ++++ + V V+ +
Sbjct: 184 ELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALFA 243
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C G+ + K ++++ GY ++ +F V DI + K I + + +
Sbjct: 244 ACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCLV 303
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 304 DGADEYLQL 312
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 174/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +++G+ +V ++GD+R+A+ LQS G VT + + + + +L
Sbjct: 219 HVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVIPTETIDGVL 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G+A + + V D + + K I +++
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEADKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLISLCA 354
>gi|256052294|ref|XP_002569709.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 337
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 164/284 (57%), Gaps = 2/284 (0%)
Query: 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81
LK F + +P+++ GPPG GKT+TIL A+ L F VLELNAS+DRGID VR +
Sbjct: 41 LKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQFSSMVLELNASDDRGIDVVREQ 100
Query: 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141
+ FA K TL G+ K+VILDEADSMT AQ ALRR +E ++ TRF L CN KII
Sbjct: 101 VLSFASTK-TLFAGKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKIIP 159
Query: 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201
IQSRC R+ L + + + +I E + T+DG++AI A GDMR+++N LQST
Sbjct: 160 AIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIYQFASGDMRKSINLLQST 219
Query: 202 HNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGN 260
+ V V+ P P V+ +L + + + +Y I + L G A +DII
Sbjct: 220 YMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAYHNITAVKNLKGIALQDIITE 279
Query: 261 IFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
I + +D+P+ ++ ++ + ++ R+S+G + LQL ++
Sbjct: 280 IHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQLGAFVS 323
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA Q++ P KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME +S TRF CN +IIEP+ SRCA R+ L++ + +++ I +E
Sbjct: 132 QNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
+S + L + +QGD+R+A+ LQS FG ++++ + V V + +
Sbjct: 192 LSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVVDALFVA 251
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRIS 290
C GN + K ++++ GY ++ IF V + D+ + K I +++ +
Sbjct: 252 CKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLV 311
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 312 DGADEYLQL 320
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 174/319 (54%), Gaps = 10/319 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T ++V +ED + + SGN+P+++ GPPG GKTTTI A L G
Sbjct: 21 VEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGKDR 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK----VTLPPGR----HKIVILDEADSMTDG 111
+ VLE+NAS+DRGID VR +++ FA + P K+VILDEAD M+
Sbjct: 81 IRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAASTIAAFKLVILDEADQMSGD 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + +L ++ + ++E
Sbjct: 141 AQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKNAMLPRLKFVAQEE 200
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ T+ GL A + GD+R+ LN +Q++ G +T E V++V P P V+ ++ +
Sbjct: 201 GVRFTDGGLVAAFRLSNGDLRRCLNTMQASAMSAGEITEESVYRVTGNPTPADVRGIVED 260
Query: 232 CVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + S+ K+ + + G + D++ + + +D+P+ K ++ ++ +V +
Sbjct: 261 MIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAA 320
Query: 291 EGVNSLLQLSGLLARLCIV 309
G +SG+L +V
Sbjct: 321 GGAKETTCISGILGAFQLV 339
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 176/311 (56%), Gaps = 10/311 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D++ +ED + + + +P+++ GPPG GKT+TI +AR L G ++
Sbjct: 27 VEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDNY 86
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQ----KVTLPPGRHKIVILDEADSMTDGAQQAL 116
VLELNAS+DRGID VR +IK FA T+P +K++ILDEADSMT+ AQ AL
Sbjct: 87 SRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVP---YKLIILDEADSMTNIAQTAL 143
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RR +E Y+ TTRF + CN KII +QSRC R++ L ++ EI EKEN+
Sbjct: 144 RRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVD 203
Query: 177 NDGLEAIVFTAQGDMRQALNNLQSTHNGF--GHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
+ + A++ GDMR+ LN LQS ++T E ++K P P ++ M+ +
Sbjct: 204 SKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLLN 263
Query: 235 GNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+ +++++ I L K G + DII + + +D+ + ++ + ++ +S G
Sbjct: 264 SDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIGS 323
Query: 294 NSLLQLSGLLA 304
+ LQL L+
Sbjct: 324 SEKLQLGSLVG 334
>gi|303388295|ref|XP_003072382.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301522|gb|ADM11022.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 305
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 181/307 (58%), Gaps = 19/307 (6%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ +VGN + V LK SS+ +PN++ GPPG GKTT+I +A L P +
Sbjct: 7 EKYRPESLQQVVGNREIVAALKSISSTNKIPNMLFYGPPGTGKTTSIRAIANNL--P--R 62
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQ--QKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
VLELNAS++RGI TVR IK FA K T K+VILDEAD M+ AQ ALRR
Sbjct: 63 SCVLELNASDERGIATVRETIKEFASTYSKTT------KLVILDEADMMSRDAQNALRRI 116
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E +S RF L N+S KII PI SRC R+ + D + S++ EIC+KENI ++ +G
Sbjct: 117 IEDFSANARFCLIANHSRKIIPPILSRCTKFRFGPIEDTE--SRIKEICKKENIKYSEEG 174
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL-NCVEGNMK 238
++ I ++GDMR+A+N++Q G ++ E V K + P+ V E L N +M
Sbjct: 175 IKGIAEISEGDMRKAVNDVQGISVSLGPISLENVRKF-NGVAPIDVYEELFENLKTMSMA 233
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
D L Y+ G +D++ N+ ++ + ++ E K+ I++E+G++ R S G + +
Sbjct: 234 DLRVKCEELKYEHGMDSDDLLKNLSKMVRKSNMKE--KMRILKEMGDIEYRRSIGCSEKV 291
Query: 298 QLSGLLA 304
Q +++
Sbjct: 292 QTDAIIS 298
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 183/319 (57%), Gaps = 6/319 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ TRF L N +II+PI SRCA+ R++ + + + ++ I + E I +D
Sbjct: 124 IMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
++ I ++GDMR+A+N LQ V A V P V E+ G++
Sbjct: 184 AIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRPADVVELFNLAFNGDVT 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K K+ +Y G A D I R + + + +K I + + V R+++G + L
Sbjct: 244 KAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQGSDEEL 303
Query: 298 QLSGLLARLCIVGSKNKKT 316
QL LL++L +G + ++T
Sbjct: 304 QLLYLLSKLGAIGKRARQT 322
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 155/268 (57%), Gaps = 10/268 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T S++V +E+ +E + SGN+P+++ GPPG GKTTTI A L G
Sbjct: 21 VEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLYGKER 80
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDG 111
+ VLE+NAS+DRGID VRN+I+ FA T K+VILDEAD M+
Sbjct: 81 IRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSSFKLVILDEADQMSSD 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E Y+ RF + CN+ KII +QSRC R+ + A +L ++ I ++E
Sbjct: 141 AQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRLAFIAQEE 200
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+I TNDGL A + GDMR+ LN LQ++ G +T E V++ P P V+ ++
Sbjct: 201 SIPFTNDGLVAAFRLSNGDMRRCLNTLQASAMSTGEITEESVYRTTGNPTPADVRGLVEE 260
Query: 232 CVEGNMKDSY-KIIHHLYKLGYAPEDII 258
+ + S+ +++ + + G + D++
Sbjct: 261 MLSSDYATSWNRVLRAVTEKGMSSTDLV 288
>gi|242398094|ref|YP_002993518.1| Replication factor C small subunit [Thermococcus sibiricus MM 739]
gi|242264487|gb|ACS89169.1| Replication factor C small subunit [Thermococcus sibiricus MM 739]
Length = 766
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 156/247 (63%), Gaps = 6/247 (2%)
Query: 67 LNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRTMEIYS 124
L+ S++RGI+ +R K+K FA+ K P G KI+ LDEAD++T AQQALRRTME++S
Sbjct: 521 LHNSDERGINVIREKVKEFARTK---PIGGVSFKIIFLDEADALTQDAQQALRRTMEMFS 577
Query: 125 NTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV 184
+ RF L+CN S KIIEPIQSRCA+ R+ L D + ++ I E E + T +GL+AI+
Sbjct: 578 SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDVARRLKYIAENEGLELTEEGLQAIL 637
Query: 185 FTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKI 243
+ A+GD+R+A+N LQ+ +T E VF V P V+EM+L +EGN +K K+
Sbjct: 638 YVAEGDLRRAINVLQAAAALDTRITDENVFLVASRARPEDVREMMLLALEGNFLKARDKL 697
Query: 244 IHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
L K G + ED++ + + L I EP K+++ +IG + R+ EG N ++QL LL
Sbjct: 698 REILLKQGLSGEDVLIQMHKEVFNLPISEPKKVALADKIGEYNFRLVEGSNEMIQLEALL 757
Query: 304 ARLCIVG 310
A+ ++G
Sbjct: 758 AQFTLLG 764
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIVG + V+RLK + + ++P+++ +GPPG GKTT+ L LAR L G +
Sbjct: 19 VEKYRPERLDDIVGQDHIVKRLKHYVKTASMPHLLFAGPPGTGKTTSSLALARELFGEHW 78
Query: 61 KDAVLELNAS 70
+ LELNAS
Sbjct: 79 RHNFLELNAS 88
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 174/318 (54%), Gaps = 22/318 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+V + V L+ ++PN+++ GPPG GKT+TIL AR + G +
Sbjct: 36 VEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
+D +LELNAS++RGI+ VR KIK FAQ + P GR KI++LDEADSMT AQ
Sbjct: 96 RDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRSCPPFKIIVLDEADSMTHAAQA 155
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L + Q+++++ ICE E +
Sbjct: 156 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLQHICELEGVR 215
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD--EPHPLAVKEMLLNC 232
D ++IV + GDMR+A+ LQS + G AE+ D E + + L +
Sbjct: 216 IDPDAYKSIVRISGGDMRRAITTLQSCYRLKG---AEHTINTDDLLEMSGIIPEHYLEDY 272
Query: 233 VEGNMKDSYKIIHHL--------YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
+E +Y+ + H Y +G + + I R D K I ++G
Sbjct: 273 LEVCRSGNYERLEHFVREIGYSAYSVGQMMDQFVEFIVRCGSLTD---KQKAIICDKLGE 329
Query: 285 VHLRISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 330 CCYRLQDGGSEYLQIMDL 347
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 40 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 99
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 100 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 157
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 158 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 217
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 218 HVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGIF 277
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G+A ++ V D + + K I +++
Sbjct: 278 AACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKSIITEKLAEADKC 337
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 338 LADGADEHLQLISLCA 353
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 183/348 (52%), Gaps = 33/348 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T SD+ + TV L+ + N+P+++ GPPG GKT+T+L LA+ L GP
Sbjct: 37 VEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPEL 96
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHK---------IVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ ++T PP +K I+ILDEADSMT
Sbjct: 97 MKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCPPFKIIILDEADSMTQ 156
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L S++ +I K
Sbjct: 157 DAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQENARSRLEDIAAK 216
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAEYVFKVCDEPHPLAV 225
E ++ + ++A++ ++GD+R+A+ LQS G E V P + +
Sbjct: 217 EGVALEDGAVDALIKCSEGDLRKAITFLQSAARLVGAVGAAGAGQEDKMDVDSRPVTVRI 276
Query: 226 KEMLLNCVEGNMKDSY-----------------KIIHHLYKLGYAPEDIIGNIFR-VAKT 267
E + + G D+ K++ + G++ ++G +++ +
Sbjct: 277 IEDIAGVIPGKTIDALVEAIRPRGAALTYQAVSKVVEDMVADGWSATQVVGQLYQAIVYD 336
Query: 268 LDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKNKK 315
IP K I+ V R+ +G + L + L R+ ++ S K+
Sbjct: 337 EGIPNIQKNEIVMVFSEVDKRLVDGSDEHLSILDLCLRISVIMSGRKQ 384
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 183/334 (54%), Gaps = 32/334 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F S +P++++ GPPG GKT+TIL LAR + G +
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGSKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK---VTLPP-----GRHKIVILDEADSMTDG 111
+ VLELNAS+DRGID VR +IK FA K T P G K++ILDEAD+MT
Sbjct: 108 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSA 167
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR ME Y+ TRF + N + K+ + SRC R++ L + + V + +KE
Sbjct: 168 AQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKLVDTVIDKE 227
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH---------NGFGH--------VTAEYVF 214
+ D ++++V ++GDMR+ALN LQ+ H G + +T E ++
Sbjct: 228 QVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGEANESPEERELITEETIY 287
Query: 215 KVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL----GYAPEDIIGNIFRVAKTLDI 270
PHP ++ +L + + D ++ + L G A DII + ++L++
Sbjct: 288 TCIAAPHPTDIRTILETLL--STSDVTSCLNTVQTLKSNKGLALADIITALSTELQSLEV 345
Query: 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
P +++S I+ + +V R+S G + +Q G++
Sbjct: 346 PPQVRVSWIEGLADVEWRLSGGGSEAIQTGGMIG 379
>gi|353231592|emb|CCD78010.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 325
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 164/284 (57%), Gaps = 2/284 (0%)
Query: 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81
LK F + +P+++ GPPG GKT+TIL A+ L F VLELNAS+DRGID VR +
Sbjct: 29 LKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQFSSMVLELNASDDRGIDVVREQ 88
Query: 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141
+ FA K TL G+ K+VILDEADSMT AQ ALRR +E ++ TRF L CN KII
Sbjct: 89 VLSFASTK-TLFAGKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKIIP 147
Query: 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201
IQSRC R+ L + + + +I E + T+DG++AI A GDMR+++N LQST
Sbjct: 148 AIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIYQFASGDMRKSINLLQST 207
Query: 202 HNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGN 260
+ V V+ P P V+ +L + + + +Y I + L G A +DII
Sbjct: 208 YMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAYHNITAVKNLKGIALQDIITE 267
Query: 261 IFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
I + +D+P+ ++ ++ + ++ R+S+G + LQL ++
Sbjct: 268 IHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQLGAFVS 311
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 176/318 (55%), Gaps = 22/318 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+V + V L+ ++PN+++ GPPG GKT+TIL AR + G +
Sbjct: 36 VEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
++ +LELNAS++RGI+ VR KIK FAQ + P GR KI++LDEADSMT AQ
Sbjct: 96 RERILELNASDERGINVVRTKIKNFAQLTASSVRPDGRPCPPFKIIVLDEADSMTHAAQA 155
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L + Q+++++ IC+ E++S
Sbjct: 156 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIITRLQHICDLESVS 215
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD--EPHPLAVKEMLLNC 232
D ++IV + GDMR+A+ LQS + G AE+ D E + + L +
Sbjct: 216 IEPDAYQSIVKISGGDMRRAITTLQSCYRLKG---AEHTINSDDLLEMSGIIPEHYLDDY 272
Query: 233 VEGNMKDSYKIIHHL--------YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
+E +Y+ + H Y +G E + + R D K I ++G
Sbjct: 273 LEVCRSGNYERLEHFVREIGYSAYSVGQMMEQFVEYVVRCGSLTD---KQKAIICDKLGE 329
Query: 285 VHLRISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 330 CCYRLQDGGSEYLQIMDL 347
>gi|154344961|ref|XP_001568422.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 364
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 171/326 (52%), Gaps = 17/326 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T +V +ED + L+ +SGN+P++++ GPPG GKTTTI A L G
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLRHLMNSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDR 79
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP---------------PGRHKIVILDE 104
+ VLE+NAS+DRGID VR + + FA + K+VILDE
Sbjct: 80 VRANVLEMNASDDRGIDVVRQQTREFASTTSIFSVMGSSSSTGSGSGGSAVKFKLVILDE 139
Query: 105 ADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164
AD M+ AQ ALRR +E Y+ RF L CN+ KII +QSRC R+ + + ++ ++
Sbjct: 140 ADQMSHDAQAALRRVIEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVKKSAMMPRL 199
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA 224
+ E E + +T DGL A +QGD+R+ LN +Q++ +T E V++V P P
Sbjct: 200 RYVAEHEGVKYTTDGLAAAYRLSQGDLRRCLNTMQASALSANEITEESVYRVTGNPTPAD 259
Query: 225 VKEMLLNCVEGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIG 283
V ++ + + + S+ K + + G + D+ I V +D+P+ K ++ ++
Sbjct: 260 VTTIVSHMLSSDFATSWIKTEEAVTQKGISMADLTREIHPVVMAMDLPQDCKCFLLMKLS 319
Query: 284 NVHLRISEGVNSLLQLSGLLARLCIV 309
++ + G L GLL +V
Sbjct: 320 DLEYYAAGGARESAGLGGLLGAFQLV 345
>gi|385301010|gb|EIF45243.1| rfc3p [Dekkera bruxellensis AWRI1499]
Length = 330
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 183/313 (58%), Gaps = 8/313 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ + G ++T++ ++ F+ G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 13 VEKYRPQNLDQVYGQQETIQTIRKFAQDGRIPHLLFYGPPGSGKTSTIIALAREIYGKNY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRGID VR++IK FA + G K+VILDEAD+MT+ AQ ALRR +
Sbjct: 73 RNMVLELNASDDRGIDXVRDQIKNFASTRQIFSSG-FKLVILDEADAMTNTAQNALRRII 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + KI + SRC R++ L + + +V + ++E +
Sbjct: 132 EKYTKNTRFCILANYAHKINPALMSRCTRFRFSPLAISAIEERVDTVIKEEKLKIEKXAE 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGH----VTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
+ +V ++GDMR+ALN LQ+ + + +++ P P +++ +L +E +
Sbjct: 192 KCLVALSKGDMRKALNVLQACAAALDKPEDTIXVDMIYECVGAPRPKSIEVILNAIMERD 251
Query: 237 MKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
DSY +++ + K G A D+I + ++ ++ +IQ +G++ IS+G +
Sbjct: 252 WTDSYSVMNKIRKTEGLALIDLIEGFMDILAKYELKPLTRIKMIQGLGDIEYGISKGGSD 311
Query: 296 LLQLSGLLARLCI 308
+Q + ++ CI
Sbjct: 312 KIQSTAVIG--CI 322
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 175/318 (55%), Gaps = 22/318 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+V + V L+ ++PN+++ GPPG GKT+TIL AR + G +
Sbjct: 34 VEKYRPRSVEDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMY 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
+D +LELNAS++RGI+ VR KIK FAQ + P GR KI++LDEADSMT AQ
Sbjct: 94 RDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRPCPPFKIIVLDEADSMTHAAQA 153
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L + Q+++++ IC +EN++
Sbjct: 154 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLKHICMQENVN 213
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD--EPHPLAVKEMLLNC 232
D ++IV + GDMR+A+ LQS + G +++ D E + + L +
Sbjct: 214 IDPDAYKSIVKISGGDMRRAITTLQSCYRLKG---SDHTINTDDLLEMSGIIPEHYLEDY 270
Query: 233 VEGNMKDSYKIIHHL--------YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
+E Y+ + H Y +G E + I R D K I ++G
Sbjct: 271 LEVCRSGKYERLEHFVREIGYSAYSVGQMMEQFVEFIVRCGSLTD---KQKAIICDKLGE 327
Query: 285 VHLRISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 328 CCYRLQDGGSEYLQIMDL 345
>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
Length = 326
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 178/312 (57%), Gaps = 14/312 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+ D+V ++ LK +G++P+++ GPPG GKT+TIL LAR LLG +
Sbjct: 5 VEKYRPRRVKDVVHHDHLKRVLKGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGEEN 64
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT-LPPG--RHKIVILDEADSMTDGAQQAL 116
++ VLELNAS++RG+D VR+KIK F + ++ PG K+VILDEAD+MT AQ AL
Sbjct: 65 MRERVLELNASDERGLDVVRDKIKTFCKMSISSFQPGCPPFKLVILDEADTMTADAQSAL 124
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RRTME + TRF L CN KII P+ SRCA R++ LT + +++ ICE+ENI
Sbjct: 125 RRTMETQAVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLYICERENIIFE 184
Query: 177 NDG---LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
N L+AIV +++GDMR A+N LQ+ VT E V +V E P + L + V
Sbjct: 185 NCSRGVLDAIVKSSRGDMRSAVNLLQTVSQQQHRVTPESVVEVAGEV-PERAFDTLWSAV 243
Query: 234 EG-----NMKDSYKIIHHLYKLGYAPEDIIGNI-FRVAKTLDIPEPLKLSIIQEIGNVHL 287
+ +D + GY ++ I RV ++ ++ K I E+
Sbjct: 244 TSPSHLEHFEDVVDAVSTFVGEGYPVGKVLSEIQSRVVQSGELENADKAVICLELMETDR 303
Query: 288 RISEGVNSLLQL 299
+++G + LQL
Sbjct: 304 CLNDGADEELQL 315
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 99 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 157 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQRERLLDIAEKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++ + +V ++GD+R+A+ LQS G V + + + + +
Sbjct: 217 NVKISHEVIAYLVKVSEGDLRKAITFLQSATRLTGGKEVMRDVITDIAGVIPATTIDGIF 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G A ++ + V + D+ + K I +++ V
Sbjct: 277 TACQSGSFDKLEAVVKDLIDEGQAAVQLVNQLHDVVVENEDLSDKQKSIITEKLAEVDKC 336
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 337 LADGADEHLQLMSLCA 352
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 175/318 (55%), Gaps = 14/318 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ ++ V L+ + ++PN++ GPPG GKT+TIL L+R L G
Sbjct: 35 VEKYRPKCVDDVAHQDEVVAVLRKSLTGADLPNLLFYGPPGTGKTSTILALSRELFGFQL 94
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
K+ VLELN+S++RGI+ +R K+K FAQ PP +KI+ILDEADSMT
Sbjct: 95 MKERVLELNSSDERGINVIREKVKNFAQLTANSLREDGKKCPP--YKIIILDEADSMTKA 152
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ+ALRRTME S TTRF L CN +II PI SRC+ R+ L+ ++ +CEKE
Sbjct: 153 AQEALRRTMEKSSKTTRFCLICNYVTRIIPPIISRCSQFRFKSLSTEDQKKRLWMVCEKE 212
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
+ + D + +V ++GD+R+A+ LQ+ H G + + V ++ +K ++
Sbjct: 213 GVKISQDAMSCLVKCSEGDLRKAMTYLQTAHRLKGAEGIDEKDVLEITGVVPDDIIKSLI 272
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQE-IGNVHLR 288
+C + + + ++ G++ II + TL L+ S++ E I V
Sbjct: 273 RSCASNSHDKVQESVDYIISEGHSAAKIISQLHDEVLTLSSLNDLQKSVVMEKIAIVDKC 332
Query: 289 ISEGVNSLLQLSGLLARL 306
+S+G + LQL L L
Sbjct: 333 LSDGADEYLQLMALATTL 350
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 175/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 71 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 130
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 131 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 188
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I KE
Sbjct: 189 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKE 248
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 249 HVKISNEGVSYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGIF 308
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ L G+A ++ + V + ++ + K I +++ V
Sbjct: 309 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKC 368
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 369 LADGADEHLQLISLCA 384
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 179/324 (55%), Gaps = 20/324 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ TV+ LK S N+P+++ GPPG GKT+TIL L + L GP
Sbjct: 26 VEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGPEL 85
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG----RH-----KIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ VT P RH KI+ILDEADSMT
Sbjct: 86 MKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILDEADSMTA 145
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YSN TRF L CN +II+P+ SRC+ R+ L ++ L+++ I +
Sbjct: 146 DAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQYIASE 205
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHV-TAEYVFKVCDE-----PHPLA 224
E+++ + L+ I+ ++GD+R+ + LQS ++ AE +E P P+
Sbjct: 206 ESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAYLDNAEITTSQVEELAGVVPEPVL 265
Query: 225 VKEMLLNCVEG-NMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEI 282
++ L+N +E ++K+ ++ K G+ +I + K ++ K + +
Sbjct: 266 LE--LVNKIESKDLKEIINYVNSFIKSGWCAASVISQLHDYYVKNDELDTEFKNKLFLLL 323
Query: 283 GNVHLRISEGVNSLLQLSGLLARL 306
R++ G N LQL L ++
Sbjct: 324 FETDSRLANGTNEHLQLLNLAVKI 347
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 182/322 (56%), Gaps = 16/322 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+V ++ V LK + + PN++ GPPG GKT+ IL +A L G
Sbjct: 40 VEKYRPKVVDDVVHQDEVVSVLKKTLTGSDFPNLLFYGPPGTGKTSAILAIAHELFGRDL 99
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--PPGR----HKIVILDEADSMTDGAQ 113
+K +LELNAS+DRGI +R+K+K FA+ + P G+ KIVILDEADSMT AQ
Sbjct: 100 YKSRILELNASDDRGIQVIRDKVKSFARHSASASRPDGKPCPSFKIVILDEADSMTQAAQ 159
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S +TRF L CN +IIEP+ SRC+ R+ L+ A L +++ IC +EN+
Sbjct: 160 AALRRTMEKESTSTRFCLICNYISRIIEPLTSRCSKFRFKPLSSAILRTRLEYICREENV 219
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
++ I+ T+ GDMR+A+ LQS + G VT + + ++ P ++ E LL
Sbjct: 220 KCNEKAIDRIIETSDGDMRKAITFLQSGYRLKGDEEVTEKDIMEIAG-VVPQSLIEGLLK 278
Query: 232 CVEGNMKDSYKI-IHHLYKLGYAPEDIIGNIFRVAKT-LDIPEPLKLSIIQEIGNVHLRI 289
N D + + + G+ I+ + V T ++ + K +I +++ V R+
Sbjct: 279 TCSSNSYDQLETAVKNFVAEGFPAVQIMNQLNDVIITHCELNDLQKSAICEQMAVVDRRL 338
Query: 290 SEGVNSLLQL----SGLLARLC 307
S+G + LQL S ++ + C
Sbjct: 339 SDGADEYLQLLDISSFIMTQFC 360
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 22/309 (7%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D V ++D V P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKD-VAHQDEV-----------CPHMLFYGPPGTGKTTTALAIAHQLFGPEL 59
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA Q+K P KI++LDEADSMT+ A
Sbjct: 60 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTEDA 119
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ I ++E
Sbjct: 120 QNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEG 179
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + L + + GD+R+A+ LQS FG +++E + V V+E+L
Sbjct: 180 LCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEELLKA 239
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C GN + K +++ GY ++ +F + + D+ + K I +++G +
Sbjct: 240 CKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKCLV 299
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 300 DGADEYLQL 308
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 18/316 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V + V L+ G++PN+++ GPPG GKT+TIL +R + G F
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMF 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
KD +LELNAS++RGI+ VR KIK F+Q + P G+ KI+ILDEADSMT AQ
Sbjct: 93 KDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQS 152
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L D +++ ++ IC E +
Sbjct: 153 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGDDKVIDRLKYICAMEGVK 212
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHV--TAEYVFKVCDEPHPLAVKEMLL 230
D ++IV + GD+R+A+ LQS + G H+ TA+ +F++ +++ L
Sbjct: 213 IEEDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTAD-LFEMSGVIPEYYLEDYLE 271
Query: 231 NCVEGNMKDSYKIIHHL----YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVH 286
C GN + + + + Y +G E + V + +P K I ++G
Sbjct: 272 VCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEF---VVHHPGLNDPQKAKICDKLGECC 328
Query: 287 LRISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 329 FRLQDGGSEYLQIMDL 344
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 173/310 (55%), Gaps = 7/310 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++ G + V ++ F S G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 14 VEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLLFYGPPGTGKTSTIVALAREIYGNNY 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 74 SNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L + ++ + KE + + D L
Sbjct: 133 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQRIDNVIVKEKVKISEDAL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNG----FGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
A + ++GDMR+ LN +Q+ G + E V++ P P +K +L + + +
Sbjct: 193 NATLKLSKGDMRKVLNVIQACQAGQNSNENEIDEELVYECIGTPKPNDIKMILNSIMNED 252
Query: 237 MKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGVN 294
+Y + + G A D+I I V + ++ E ++SI+ +G++ IS G N
Sbjct: 253 WNTAYFTMERIKVTQGLALVDLIEGIVEVLEGYELKNEETRISILSRLGDIEYSISHGGN 312
Query: 295 SLLQLSGLLA 304
+Q S ++
Sbjct: 313 ERVQSSAVIG 322
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 165/310 (53%), Gaps = 23/310 (7%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQEEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGPEL 59
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA ++ P KI+ILDEADSMT+ A
Sbjct: 60 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDA 119
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E
Sbjct: 120 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEG 179
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
+S + L + +QGD+R+A+ LQS FG +T+ + V V ++
Sbjct: 180 LSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTA 239
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--DIPEPLKLSIIQEIGNVHLRI 289
C G+ + K + ++ GY II +F + DI + K I + + R+
Sbjct: 240 CKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRL 299
Query: 290 SEGVNSLLQL 299
+G + LQL
Sbjct: 300 VDGADEYLQL 309
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 178/309 (57%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D+ G + V ++ F G +P+++ GPPG GKT+ I+ L+R + G ++
Sbjct: 11 IEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYGTNY 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 71 RNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L + +V ++ EN+ + +
Sbjct: 130 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTDAIEKRVNKVLILENLKLSREAF 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGF----GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
A++ ++GDMR+ALN LQ++ VT + +++ PHP ++ L + ++ +
Sbjct: 190 TALLRLSKGDMRRALNVLQASKATLDDPDAEVTEDTIYECIGAPHPQDIETALESMLKDD 249
Query: 237 MKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ ++ + L G A D++ I + ++ ++ ++ ++ ++ +S+G N
Sbjct: 250 WSTAFFTVNKIRTLKGLALIDLVEGIVETLEGYELKPETRVELLCKLSDIEYAMSKGGND 309
Query: 296 LLQLSGLLA 304
+Q S ++
Sbjct: 310 KVQSSAVIG 318
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 170/310 (54%), Gaps = 25/310 (8%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D V ++D V P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKD-VAHQDEV-----------CPHMLFYGPPGTGKTTTALAIAHQLFGPEL 59
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA---------QQKVTLPPGRHKIVILDEADSMTD 110
+K VLELNAS+DRGI+ VR KIK FA Q PP +KI+ILDEADSMT+
Sbjct: 60 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP--YKIIILDEADSMTE 117
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ IC++
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 177
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEML 229
E ++ ++ L + +QGD+R+A+ LQ FG ++++ + V V+ +
Sbjct: 178 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALF 237
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ + K ++++ GY ++ +F V DI + K I + + +
Sbjct: 238 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCL 297
Query: 290 SEGVNSLLQL 299
+G + LQL
Sbjct: 298 VDGADEYLQL 307
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 169/305 (55%), Gaps = 2/305 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ +++ ++ +K + +P++++ GPPG GKT+TIL +AR + G S
Sbjct: 39 VEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTSTILAVARQIYGNSL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELN+S++RGI VR +I+ FA + + K++ILDE D+MT AQ ALRR +
Sbjct: 99 ANMTLELNSSDERGIGVVRQEIQDFASTRSVFS-NKFKLIILDECDAMTQDAQAALRRVI 157
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF L CN KII +QSRC R+ L+ + ++ + + E + GL
Sbjct: 158 EKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFVRERLQYVADIEKMKLGPGGL 217
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V GDMR++LN LQS H F V V+ P P ++ +L + + +
Sbjct: 218 DAVVQLGSGDMRRSLNILQSCHMAFDTVDQSAVYTCTGNPLPADIERVLTWLLNDRVAEV 277
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ I L G A DI+ + L IP P K+++++ + +V R++ + LQL
Sbjct: 278 FANILKLQVDKGIALVDIVRELHPFVMALSIPVPAKVALVERLADVEHRLAFSTSEKLQL 337
Query: 300 SGLLA 304
L+A
Sbjct: 338 GALVA 342
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 177/341 (51%), Gaps = 39/341 (11%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ SD++ ++D + ++ + G +P+++ GPPG GKT+TIL +A+ G +
Sbjct: 38 VEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPHLLFHGPPGTGKTSTILAVAKEFYGSAV 97
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQ-------------KVTLPPGRH---------- 97
+ VLELNAS+DRGI+TVR +IK FA+ K +P
Sbjct: 98 RTHVLELNASDDRGINTVREQIKTFAETSSTSFQQNRLIFGKSAVPATEAAEATSSHGQE 157
Query: 98 ---------KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCA 148
K++ILDEAD MT+ AQ ALRR ME Y+ RF L CN KI IQSRC
Sbjct: 158 KKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCT 217
Query: 149 MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH- 207
R+ ++ A L +K +I + E + ++DGL+A+V A+GDMR+ LN +Q++H H
Sbjct: 218 GFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALVKIARGDMRRLLNCMQASH--LAHP 275
Query: 208 ---VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIFR 263
V A+ V + P P V M + + K + L GYA D +
Sbjct: 276 GEEVNADIVHRTLGLPPPSEVTTMFERLLVADFFACCKELDELVTAKGYAMRDWVIAFHE 335
Query: 264 VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
+D P + ++ + + ++ R++ G + +Q+ ++A
Sbjct: 336 RILLVDWPANVLITFVSRLADLEERLATGASEAVQMHAVVA 376
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 183/309 (59%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + + G DTV+ ++ F G +P+++ GPPG GKT+TI+ LA+ + G ++
Sbjct: 15 VEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKEIYGKNY 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRGI VR++I FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 75 RNMVLELNASDDRGISVVRDQIVNFASTRQIFSNG-FKLIILDEADAMTNVAQNALRRVI 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ TRF + N + K+ + SRC R+ ++ + ++ ++ ++E I+ +D L
Sbjct: 134 EKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGINIDDDAL 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGH----VTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
++++ ++GDMR+ALN LQ+ G +T+ +++ P P ++ +L ++ N
Sbjct: 194 QSLLKLSKGDMRKALNVLQACFTGLDSPSQAITSPMIYECVGAPDPQDIEHVLDTIIQEN 253
Query: 237 MKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ ++ I++ L + GYA D++ + + + +L+I++ + ++ IS G N
Sbjct: 254 WEAAFTIMNRLKLEKGYALIDLVNGFVDILGGYQLEKMCRLTILKGLADIEYAISRGGND 313
Query: 296 LLQLSGLLA 304
+Q + ++
Sbjct: 314 AIQNTAVIG 322
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 180/331 (54%), Gaps = 28/331 (8%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F + +P+++ GPPG GKT+TIL LAR + G +
Sbjct: 49 VEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGSKN 108
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK-------VTLPPGRHKIVILDEADSMTDGA 112
+ VLELNAS+DRGID VR +IK FA K + PG +K++ILDEAD+MT A
Sbjct: 109 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADAMTSTA 168
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRR ME Y+ TRF + N + K+ + SRC R++ L +A + V ++ +EN
Sbjct: 169 QMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVIAEEN 228
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH------------------VTAEYVF 214
+ + +A+V ++GDMR+ALN LQ+ H +T ++
Sbjct: 229 VQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIQGTPKLEEKDIVRDLITETTIY 288
Query: 215 KVCDEPHPLAVKEMLLNCVE-GNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPE 272
PHP + +++ ++ ++K ++I+ + G A DII + LD+P
Sbjct: 289 DCIASPHPADISKIMNTILKTTDVKSCLQMINAVKSTQGLALADIITALSEELTKLDVPA 348
Query: 273 PLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
+ ++ +Q + V R+S G + ++Q L+
Sbjct: 349 SVMITWLQGLAEVEYRLSGGGSEVIQTGALV 379
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 176/315 (55%), Gaps = 16/315 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+V + V L+ ++PN+++ GPPG GKT+TIL AR + G +
Sbjct: 34 VEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMY 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
KD +LELNAS++RGI+ VR KIK F+Q + P GR KI+ILDEADSMT AQ
Sbjct: 94 KDRILELNASDERGINVVRTKIKNFSQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQS 153
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S++TRF L CN +II PI SRC+ R+ L + ++++++ ICE E++
Sbjct: 154 ALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICELESVK 213
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
D + IV + GD+R+A+ LQS G H + +F++ + + +
Sbjct: 214 IDPDAYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDV 273
Query: 232 CVEGNMKDSYKIIHHL----YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
C GN + + + + Y +G E ++ I D P K I +++G
Sbjct: 274 CRSGNYERLEQFVRDIGYSAYSVGQMMEQLVEFIVHHPNLTD---PQKAKICEKLGECCY 330
Query: 288 RISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 331 RLQDGGSEYLQIMDL 345
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 180/331 (54%), Gaps = 28/331 (8%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F + +P+++ GPPG GKT+TIL LAR + G +
Sbjct: 49 VEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGSKN 108
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK-------VTLPPGRHKIVILDEADSMTDGA 112
+ VLELNAS+DRGID VR +IK FA K + PG +K++ILDEAD+MT A
Sbjct: 109 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADAMTSTA 168
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRR ME Y+ TRF + N + K+ + SRC R++ L +A + V ++ +EN
Sbjct: 169 QMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVIAEEN 228
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH------------------VTAEYVF 214
+ + +A+V ++GDMR+ALN LQ+ H +T ++
Sbjct: 229 VQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIQGTPKLEEKDIVRDLITETTIY 288
Query: 215 KVCDEPHPLAVKEMLLNCVE-GNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPE 272
PHP + +++ ++ ++K ++I+ + G A DII + LD+P
Sbjct: 289 DCIASPHPADISKIMNTILKTTDVKSCLQMINAVKSTQGLALADIITALSEELTKLDVPA 348
Query: 273 PLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
+ ++ +Q + V R+S G + ++Q L+
Sbjct: 349 SVMITWLQGLAEVEYRLSGGGSEVIQTGALV 379
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 172/316 (54%), Gaps = 6/316 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +IV +++ L+ + +P+++ GPPG GKTT IL AR + G F
Sbjct: 20 VEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAILACAREMFGAQF 79
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK--VTLPPGRHKIVILDEADSMTDGAQQALRR 118
K VLELNAS+DRGID VR +IK FA + L G K+VILDEAD+MT AQ ALRR
Sbjct: 80 KTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAG-IKLVILDEADAMTSAAQAALRR 138
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME Y++ RF L CN + KII IQSRC R+ + AQ++ ++ I ++E +
Sbjct: 139 IMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQMIQRLEYIADREGVPVDRA 198
Query: 179 GLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
+A+ AQGDMR+A+ +QST + VT + V+ P P + + +
Sbjct: 199 AFDALARIAQGDMRRAIYLMQSTFLASASARVTEDGVYANAGMPSPADLHAIAQILLYDP 258
Query: 237 MKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ I + K G+A D+I + +++ +K + +++ N+ R+ +
Sbjct: 259 FAQAFCKISEIKKGKGFALLDMIHGLHEAVMLMELSPKVKAFLFEQLANMEWRLVSATSE 318
Query: 296 LLQLSGLLARLCIVGS 311
+QL+ L+ + S
Sbjct: 319 RIQLAALVGIFRLAAS 334
>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
Length = 354
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 8/312 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+T D+V +++ +E +K F +P++++ GPPG GKT+TIL AR + P
Sbjct: 31 VEKYRPKTLDDLVAHQEIIETIKRFVKMNALPHLLLHGPPGTGKTSTILACARQMYPPGQ 90
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV----TLPPGRHKIVILDEADSMTDGAQQA 115
+ VLELNAS+ RGID VR IK F + +L K+VILDEAD+MT +Q A
Sbjct: 91 LRQYVLELNASDARGIDVVRECIKQFVSSRSMFSGSLGTNMPKLVILDEADNMTSVSQFA 150
Query: 116 LRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISH 175
LRR +E YS+ RF L CN + KII +QSRC R+ L DA+ +V + + E +
Sbjct: 151 LRRVIEQYSSNARFCLICNYASKIIPALQSRCTKFRFAPLKDAEARMRVDYVAKCEGVKI 210
Query: 176 TNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH--VTAEYVFKVCDEPHPLAVKEMLLNCV 233
+ DG+ A++ T +GDMR+ LN LQS + V A + KV P + +
Sbjct: 211 SEDGMLALLRTGEGDMRKVLNTLQSCTLSYPSHTVDANIIHKVAGLPETSTIDRLEAVLC 270
Query: 234 EGNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+ +++ +I L K GY+ D++ I T+D+P + + +++ + R+S G
Sbjct: 271 QKPLREGMMVIEELRVKHGYSVADLLREIHDRMVTVDMPPRARNLLFRDLAEIEYRLSSG 330
Query: 293 VNSLLQLSGLLA 304
+ +Q + L+
Sbjct: 331 CSEKVQGAALVG 342
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 156/263 (59%), Gaps = 3/263 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ ++ + F +P++++ GPPG GKT+TIL A+ L P
Sbjct: 15 VEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYTPQQ 74
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGI VR +I FA G +K++ILDEAD+MT+ AQ ALRR
Sbjct: 75 FNSMVLELNASDDRGIGIVRGQILSFASTGTMYRSG-YKLIILDEADAMTNDAQNALRRI 133
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L Q+L ++ + +EN++ T DG
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITEENVTVTEDG 193
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
+A++ + GDMR+ +N LQST FG V E V+ P P+ +K ++ + + +
Sbjct: 194 KKALMTLSGGDMRKVINVLQSTWLAFGCVNEENVYTCVGHPLPVDIKNIINWLLNESYEA 253
Query: 240 SYKIIHHL-YKLGYAPEDIIGNI 261
+Y + L K G A +DI+ I
Sbjct: 254 AYNKVQDLKTKKGLALQDILTEI 276
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 177/316 (56%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ ++ + +V ++GD+R+A+ LQS G ++ + + + ++ ++
Sbjct: 219 NVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGIV 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ +L G+A ++ + + + ++ + K I +++ V
Sbjct: 279 TACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEVDKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLMSLCA 354
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 182/335 (54%), Gaps = 34/335 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG-PS 59
+EKYRP + ++ G++D + + F S +P++++ GPPG GKTTTIL LAR + G +
Sbjct: 48 VEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYGIKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK----VTLPP------GRHKIVILDEADSMT 109
+ VLELNAS+DRGID VR +IK FA K V P G K++ILDEAD+MT
Sbjct: 108 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLIILDEADAMT 167
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRR ME Y+ TRF + N + K+ + SRC R++ L +A + S V ++ E
Sbjct: 168 ATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRSLVDKVIE 227
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG-----------------FGHVTAEY 212
EN+ + E++V ++GDMR+ALN LQ+ H +T
Sbjct: 228 AENVRIQPEATESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKDQPSPEHELITDAT 287
Query: 213 VFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL----GYAPEDIIGNIFRVAKTL 268
++ PHP ++E++ + + D ++ + L G A DI+ + +TL
Sbjct: 288 IYNCIAAPHPSDIREIMTTLL--STSDVISCLNTINTLKTSKGLALADILSALGEQLQTL 345
Query: 269 DIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
++P ++S ++ + V R+S G + ++Q GL+
Sbjct: 346 EVPAQTRISWLEGLAEVEWRLSGGGSEMVQTGGLV 380
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 175/315 (55%), Gaps = 16/315 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + D+V + V L+ ++PN+++ GPPG GKT+TIL AR + G +
Sbjct: 34 VEKYRPSSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMY 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
KD +LELNAS++RGI+ VR KIK F+Q + P GR KI+ILDEADSMT AQ
Sbjct: 94 KDRILELNASDERGINVVRTKIKNFSQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQS 153
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S++TRF L CN +II PI SRC+ R+ L + ++++++ ICE E++
Sbjct: 154 ALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICELESVK 213
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
D + IV + GD+R+A+ LQS G H + +F++ + + +
Sbjct: 214 IDPDAYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDV 273
Query: 232 CVEGNMKDSYKIIHHL----YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
C GN + + + + Y +G E ++ I D P K I +++G
Sbjct: 274 CRSGNYERLEQFVRDIGYSAYSVGQMMEQLVEFIVHHPNLTD---PQKAKICEKLGECCY 330
Query: 288 RISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 331 RLQDGGSEYLQIMDL 345
>gi|449684117|ref|XP_004210543.1| PREDICTED: replication factor C subunit 2-like [Hydra
magnipapillata]
Length = 161
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 112/140 (80%)
Query: 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQS 200
E IQSRCA+LRY KLTDAQLL ++++ICEKE + T++GLEAIVFTAQGDMRQA+NNLQS
Sbjct: 13 EAIQSRCAVLRYTKLTDAQLLERLLDICEKEKVIKTDEGLEAIVFTAQGDMRQAINNLQS 72
Query: 201 THNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGN 260
TH GFG + E VFKVCDEPHP+ +KEML +C+ N+ ++YK++ HL++LGY+ DII
Sbjct: 73 THTGFGFINPENVFKVCDEPHPILIKEMLNHCILSNIDEAYKVMAHLWRLGYSAVDIITV 132
Query: 261 IFRVAKTLDIPEPLKLSIIQ 280
IFRV K D+ E LKL I+
Sbjct: 133 IFRVCKNHDMAEFLKLEYIK 152
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 179/311 (57%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ G + + ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 16 VEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGRNY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRVI 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L + ++ + +E + + +
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKLSPEAE 194
Query: 181 EAIVFTAQGDMRQALNNLQS-----THNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
+A++ + GDMR+ LN LQS + G ++ + +++ C P P +K +L + +E
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAPRPSDLKTVLKSMLED 254
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGV 293
+ ++ ++ + G A D+I I ++ + D+ E ++ ++ + ++ IS+G
Sbjct: 255 DWGTAHYTLNKIRSAKGLALIDLIEGIVKILEKYDLQNEETRVQLLTRLADIEYSISKGG 314
Query: 294 NSLLQLSGLLA 304
N +Q S ++
Sbjct: 315 NDQIQGSAVIG 325
>gi|333911588|ref|YP_004485321.1| replication factor C [Methanotorris igneus Kol 5]
gi|333752177|gb|AEF97256.1| Replication factor C [Methanotorris igneus Kol 5]
Length = 756
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 67 LNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEIYS 124
L+ S++RGID +R K+K FA+ K P G KI+ LDE+D++T AQ ALRRTME YS
Sbjct: 511 LHNSDERGIDVIRTKVKDFARTK---PIGDAPFKIIFLDESDALTSDAQNALRRTMEKYS 567
Query: 125 NTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV 184
+ RF L+CN KII PIQSRCA+ R++ L ++ K+ EI EKE ++ T +G+EAI+
Sbjct: 568 DVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDVVKKLKEIAEKEGLTLTPEGIEAII 627
Query: 185 FTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKII 244
+ ++GDMR+A+N LQ+ + + E V+KV P +K+M+ +EG ++ +++
Sbjct: 628 YVSEGDMRKAINVLQTAASVSKEINDEVVYKVSSRARPEEIKKMIELALEGKFIEARELL 687
Query: 245 HHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
+ L G + ED+I IFR +L+I E K+ +++ +G RI EG N +QL LL
Sbjct: 688 YKLMIDWGMSGEDVILQIFREIPSLNIDERKKVELVEALGECDYRIVEGANERIQLCALL 747
Query: 304 ARLC 307
A++C
Sbjct: 748 AKMC 751
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 54/70 (77%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T +IVG+E+ V+RLK + ++P+++ SGPPGVGKTT LCLAR L G ++
Sbjct: 6 VEKYRPKTLDEIVGHEEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGENW 65
Query: 61 KDAVLELNAS 70
+D LELNAS
Sbjct: 66 RDNFLELNAS 75
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 178/325 (54%), Gaps = 20/325 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ ++ + V LK S N+P+++ GPPG GKT+TIL L + L GP
Sbjct: 26 VEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPPGTGKTSTILALTKELFGPEL 85
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ V+ P + +KI+ILDEADSMT
Sbjct: 86 TKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRENHPCPPYKIIILDEADSMTA 145
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS+ TRF L CN +II+P+ SRC+ R+ L A L ++ I ++
Sbjct: 146 DAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKSLDAANALDRLKYIAKE 205
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAEYVFKVCDEPHPLAV 225
E++ + L+ I+ + GDMR+A+ LQS H G +T + + ++ +
Sbjct: 206 ESVDYEEGVLDDILKISSGDMRRAITLLQSAHKRKGLEGSKKITPQEIEEISGLVPNSTI 265
Query: 226 KEMLLNCVEGNMKDSYKIIHHLYKLGY---APEDIIGNIFRVAKTLDIPEPLKLSIIQEI 282
E+ E N+ + + ++ K G+ A + + N + V+ K+S I +
Sbjct: 266 HELAAKIAESNIDEIAEYVNTFMKSGWSVAAVTEQLHNYYLVSDDYGTDFKNKVSWI--L 323
Query: 283 GNVHLRISEGVNSLLQLSGLLARLC 307
N +++ G N +QL L+ ++C
Sbjct: 324 FNTDSKLTNGTNEHIQLLNLVIQIC 348
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 134/209 (64%), Gaps = 6/209 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V + V L+ S+ ++PN+++ GPPG GKT+TIL AR L G F
Sbjct: 33 VEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMF 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQQ 114
K+ +LELNAS+DRGI +RNK+K FAQ T P G+ KIVILDEAD+MT AQ
Sbjct: 93 KERILELNASDDRGIAVIRNKVKTFAQLAASGTRPDGKPCPPFKIVILDEADAMTHAAQA 152
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME + TTRF L CN +IIEPI SRC R+ L +++ ++ IC++E +
Sbjct: 153 ALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLRQEKIIERLRFICDQETVE 212
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHN 203
+ + IV + GD+R+A+ LQS H
Sbjct: 213 VEDQAYQDIVDISGGDLRRAITTLQSCHR 241
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 170/309 (55%), Gaps = 22/309 (7%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D V ++D V P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKD-VAHQDEV-----------CPHMLFYGPPGTGKTTTALAIAHQLFGPEL 59
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA Q K P KI++LDEADSMT+ A
Sbjct: 60 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDA 119
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + S+++ I ++E
Sbjct: 120 QNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEG 179
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPLAVKEMLLN 231
+ + L + F + GD+R+A+ LQS FG +++E + V V+ +L
Sbjct: 180 LCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALLKA 239
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C GN + K +++ GY ++ +F + + D+ + K I +++G +
Sbjct: 240 CKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLV 299
Query: 291 EGVNSLLQL 299
+G + LQL
Sbjct: 300 DGADEYLQL 308
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 185/347 (53%), Gaps = 36/347 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T SD+ + TV+ L+ S N+P+++ GPPG GKT+T+L LA+ L GP
Sbjct: 36 VEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPDM 95
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP-PGRH--------KIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ ++T P PG KI+ILDEADSMT
Sbjct: 96 IKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPPFKIIILDEADSMTQ 155
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L + ++ EI EK
Sbjct: 156 DAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKRRLEEIAEK 215
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG------HVTAEYVFKVCDEPHPLA 224
E ++ + ++A++ ++GD+R+A+ LQS + V V + +
Sbjct: 216 EGVALEDGAVDALIKCSEGDLRKAITFLQSAARLVSANAPDKEAEGDEVMDVDKKAVTVK 275
Query: 225 VKEMLLNCVEGNMKD-------------SYKII----HHLYKLGYAPEDIIGNIFRVAKT 267
+ E + + D SY+II L G++ ++ +++ A T
Sbjct: 276 IVEDIAGVIPDTTIDDLVKAIRPKRSGSSYQIISDVVEKLVADGWSAGQVVNQLYQ-ALT 334
Query: 268 LD--IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
D IP+ K I+ V R+ +G + L + L R+ + SK
Sbjct: 335 YDETIPDAQKNKIVLVFSEVDKRLVDGADEHLSILDLSVRISNIMSK 381
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 163/310 (52%), Gaps = 31/310 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ E+ V L + + P+++ GPPG GKTTT L +A L GP
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTDGA 112
+K VLELNAS+DRGI+ VR KIK FA ++ P KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDA 131
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ L++ + ++++ IC +E
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEG 191
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL-AVKEMLLN 231
+S + L + +QGD+R+A+ LQ PL V ++
Sbjct: 192 LSLDGEALSTLSSISQGDLRRAITYLQVV--------------------PLEVVNKLFTA 231
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--DIPEPLKLSIIQEIGNVHLRI 289
C G+ + K + ++ GY II +F + DI + K I + + R+
Sbjct: 232 CKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRL 291
Query: 290 SEGVNSLLQL 299
+G + LQL
Sbjct: 292 VDGADEYLQL 301
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 179/311 (57%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ G + + ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 16 VEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGRNY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRVI 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L + ++ + +E + + +
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKLSPEAE 194
Query: 181 EAIVFTAQGDMRQALNNLQS-----THNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
+A++ + GDMR+ LN LQS + G ++ + +++ C P P +K +L + +E
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAPRPSDLKTVLKSMLED 254
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGV 293
+ ++ ++ + G A D+I I ++ + D+ E ++ ++ + ++ IS+G
Sbjct: 255 DWGTAHYTLNKIRSAKGLALIDLIEGIVKILEEYDLQNEETRVQLLTRLADIEYSISKGG 314
Query: 294 NSLLQLSGLLA 304
N +Q S ++
Sbjct: 315 NDQIQGSAVIG 325
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 181/333 (54%), Gaps = 30/333 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T SD+ G++D + + F S +P+++ GPPG GKT+TIL LAR + G +
Sbjct: 45 VEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIYGAEN 104
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---------KIVILDEADSMTD 110
+ VLELNAS+DRGI+ VR +IK FA K G K++ILDEAD+MT+
Sbjct: 105 MRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILDEADAMTN 164
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRR ME Y+ TRF + N S K+ + SRC R++ L + + S V ++ E+
Sbjct: 165 TAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVDKVIEE 224
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF------------------GHVTAEY 212
EN+ T D +E++V ++GDMR+ALN LQ+ H +T E
Sbjct: 225 ENVKITPDAVESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQIVRDTITTET 284
Query: 213 VFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDI 270
++ P P A+K++L + + + I ++ K+ G A DII ++ L++
Sbjct: 285 IYNCVAAPPPDAIKKILNTLLSTSDVTACLTIINMLKISQGLALADIITSLSEELVKLEV 344
Query: 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
+ ++ + + + R++ G N +Q + ++
Sbjct: 345 KPQVMITWLDALAEIEYRVASGANEAIQTAAVV 377
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 178/311 (57%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+ G ++ V ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 13 VEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALAREIYGKNY 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 73 SNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L + +++ + EN+ +
Sbjct: 132 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETRIANVLVHENLKLNDTAK 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFG-----HVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
A++ ++GDMR+ LN LQ++ +T + +++ P P ++ +L + +E
Sbjct: 192 RALLDLSKGDMRRVLNVLQASRATLDDPSNEEITDDIIYECVGAPRPEDLETVLKSILED 251
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGV 293
+ +Y + + + G A D+I I ++ + ++ E ++ ++ +G++ IS+G
Sbjct: 252 DWSTAYYTLTKVRTMKGLALIDLIEGIVKILEEYELKNEVTRIELLTRLGDIEYAISKGG 311
Query: 294 NSLLQLSGLLA 304
N +Q S ++
Sbjct: 312 NDKIQSSAVIG 322
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 171/309 (55%), Gaps = 10/309 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +DIV + V ++ G+ PN++ GPPG GKT+ I AR + G +
Sbjct: 36 VEKYRPKNVNDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--PPGRH----KIVILDEADSMTDGAQQ 114
KD +LELNAS+DRGI VR KIK FA ++ P G+ KI+ILDEADSMT AQ
Sbjct: 96 KDRILELNASDDRGIQVVREKIKSFALRRANPNGPDGKKCPPFKIIILDEADSMTGAAQT 155
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR ME S++TRF L CN +II+PI SRC R+ L+D + ++++ IC +EN+
Sbjct: 156 ALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSIARLEYICNEENLK 215
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG---HVTAEYVFKVCDEPHPLAVKEMLLN 231
LE IV + GD+RQA+ LQS G +TA+ V + +
Sbjct: 216 ADKSVLEKIVEASGGDLRQAVMCLQSITRLKGKDYEITADDALDVIGLIPDEQINILWEA 275
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNI-FRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C +GN + K + +L GY +I + R+ + ++ + K I +G R++
Sbjct: 276 CKKGNYINVQKSLENLLLEGYPGAKVIEQLNERIIFSDELTDKQKAIIGDVLGECDFRLT 335
Query: 291 EGVNSLLQL 299
EG + +QL
Sbjct: 336 EGSDEYIQL 344
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 140/223 (62%), Gaps = 7/223 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T DIV + V+ L+ S G++P+++ GPPG GKT+ IL A+ L G
Sbjct: 34 VEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDIS 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT------LPPGRHKIVILDEADSMTDGAQQ 114
+D VLELNAS++RGI VR+K+K FAQ V+ P +K+VILDEADSMT AQ
Sbjct: 94 RDRVLELNASDERGIQVVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQA 153
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME + TTRF L CN +II PI SRC+ R+ L ++ ++ EICE EN+
Sbjct: 154 ALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVD 213
Query: 175 -HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKV 216
+ L V T +GD+R+AL LQ +G +TA+ + +V
Sbjct: 214 VGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEV 256
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 182/331 (54%), Gaps = 28/331 (8%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F + +P+++ GPPG GKT+TIL LAR + GP +
Sbjct: 48 VEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGPKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK-------VTLPPGRHKIVILDEADSMTDGA 112
+ VLELNAS+DRGI+ VR +IK FA K T+ PG +K++ILDEAD+MT A
Sbjct: 108 MRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEADAMTSTA 167
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRR ME Y+ TRF + N + K+ + SRC R++ L ++ + V ++ +EN
Sbjct: 168 QMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDKVIMEEN 227
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH------------------VTAEYVF 214
+ + +A+V ++GDMR+ALN LQ+ H +T ++
Sbjct: 228 VQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIKGTPKMEEKDIVRDLITETTIY 287
Query: 215 KVCDEPHPLAVKEMLLNCVE-GNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPE 272
PHP + +++ ++ ++K ++I+ + G A DII + +D+P
Sbjct: 288 DCIASPHPADISKIMNTILKTSDVKSCLQMINAIKSTQGLALADIITALSEELIKVDVPA 347
Query: 273 PLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303
+ ++ +Q + V R+S G + ++Q ++
Sbjct: 348 SVMITWLQGLAEVEYRLSGGGSEVIQTGAVV 378
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 176/316 (55%), Gaps = 18/316 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V + V L+ G++PN+++ GPPG GKT+TIL R + G +
Sbjct: 32 VEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAAGRQIFGDMY 91
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
K+ +LELNAS++RGI+ VR KIK F+Q + P GR KIVILDEADSMT AQ
Sbjct: 92 KNRILELNASDERGINVVRTKIKTFSQLAASSVRPDGRPCPPFKIVILDEADSMTHAAQS 151
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L + ++++++ ICE+E +
Sbjct: 152 ALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFRFKSLGEEKVIARLQFICEQEGVQ 211
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHV--TAEYVFKVCDEPHPLAVKEMLL 230
D ++IV + GD+R+A+ LQS G H TA+ +F++ + + L
Sbjct: 212 IDPDAYKSIVKISGGDLRRAITTLQSCFRLKGPEHTINTAD-LFEMSGVIPDYYLDDYLE 270
Query: 231 NCVEGNMKDSYKIIHHL----YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVH 286
C G+ + K + + Y +G E + I + +P K I ++G
Sbjct: 271 VCRSGDYERLEKFVRDIGYSAYSVGQMMEQFVEFI---VNHPGLNDPQKAKICDKLGECC 327
Query: 287 LRISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 328 FRLQDGASEYLQIMDL 343
>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 173/315 (54%), Gaps = 13/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+E RP+T D+ + V L+ + G++P+ + GPPG GKT+TIL +AR GP
Sbjct: 1 MEHSRPKTTHDVAHQSEVVAMLQKCVAGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQL 60
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
K+ VLELNAS++RGI VR KIK FA PP KI++LDEAD+MT+
Sbjct: 61 MKERVLELNASDERGIGVVREKIKNFAVMTANTRVSGGYPCPP--FKIILLDEADAMTEA 118
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRT+E +SN TRF + CN +IIEP+ SRCA R+ L+DA +L+++ I + E
Sbjct: 119 AQSALRRTIEQHSNVTRFCMVCNYVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAE 178
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEML 229
N+ ++ L+ IV + GDMRQA+ LQS H G + E +V V + E+L
Sbjct: 179 NVKCADEVLQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETSHVEDVSGLVPQSTINELL 238
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C E + + + G++ ++ + +++ E K I+ ++ R+
Sbjct: 239 SRCNENSFEALQASVDDAILSGFSGSQLLHQLHETLMEMEMDESKKAKILHKMAVADKRL 298
Query: 290 SEGVNSLLQLSGLLA 304
+G + L L +LA
Sbjct: 299 IDGADEQLTLLDVLA 313
>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
Length = 326
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 180/313 (57%), Gaps = 16/313 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+ D+V ++ L +G++P+++ GPPG GKT+TIL LAR LLG +
Sbjct: 5 VEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGEGN 64
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT-LPPG--RHKIVILDEADSMTDGAQQAL 116
++ VLELNAS++RG+D VR+KIK F++ ++ PG K+VILDEAD+MT AQ AL
Sbjct: 65 MRERVLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKLVILDEADTMTADAQSAL 124
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RRTME +S TRF L CN KII P+ SRCA R++ L + +++ ICE+ENI
Sbjct: 125 RRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERENIIFE 184
Query: 177 N---DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
N L+AIV +++GDMR A+N LQ+ VT E + ++ E P V +ML + V
Sbjct: 185 NCSRSVLDAIVKSSRGDMRSAVNLLQTVSQQ-PRVTPESIVEIAGEV-PERVFDMLWSAV 242
Query: 234 E------GNMKDSYKIIHHLYKLGYAPEDIIGNI-FRVAKTLDIPEPLKLSIIQEIGNVH 286
G+ + + GY ++ I RV + +I + K +I +
Sbjct: 243 TSQPRQPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRVVHSGEIEDADKAAICLSLMETD 302
Query: 287 LRISEGVNSLLQL 299
+++G + LQL
Sbjct: 303 RCLNDGADEELQL 315
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 180/344 (52%), Gaps = 36/344 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ DI E TV L+ + N+P+++ GPPG GKT+TIL LA+ L GP
Sbjct: 36 VEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGPEM 95
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---------KIVILDEADSMTD 110
K VLELNAS++RGI VR+K+K FA+ ++T PP + KI+ILDEADSMT
Sbjct: 96 MKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGYRDKYPCPPFKIIILDEADSMTQ 155
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTMEIYS TRF L CN +II+P+ SRC+ R+ L ++ EI
Sbjct: 156 DAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAKKRLEEIATA 215
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-------------------HVTAE 211
E++ + ++A++ ++GD+R+A+ LQS G +T +
Sbjct: 216 ESVPVDDGAIDALIRCSEGDLRKAVTFLQSAARLVGAGAQPKDSDGDDDMEVDKKAITVK 275
Query: 212 YVFKVCDEPHPLAVKEMLLNCVEGNMKDSY----KIIHHLYKLGYAPEDIIGNIFRVAKT 267
+ + + E++ SY K++ + G++ ++ +++V T
Sbjct: 276 IIEDIAGVIPSKTIDELVAALRPRGSNGSYAGVSKVVEDMVADGWSAGQVVSQLYQVV-T 334
Query: 268 LD--IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309
D IP+ K I+ V R+ +G + L + L R+ +
Sbjct: 335 FDETIPDVQKNKIVMVFSEVDKRLLDGADEHLSILDLSMRISAI 378
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 175/316 (55%), Gaps = 14/316 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V L+ ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ N+ + +V ++GD+R+A+ LQS G V+ + + + + +
Sbjct: 219 NVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ +L G+A ++ + + + ++ + K I +++ V
Sbjct: 279 TACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKC 338
Query: 289 ISEGVNSLLQLSGLLA 304
+++G + LQL L A
Sbjct: 339 LADGADEHLQLMSLCA 354
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 176/322 (54%), Gaps = 14/322 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T DIV + V L+ ++PN++ GPPG GKT+TIL AR L G F
Sbjct: 38 VEKYRPKTVDDIVEQVEVVSVLRQTLKGADLPNLLFYGPPGTGKTSTILAAARQLFGDMF 97
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQQ 114
K+ +LELNAS+DRGI +R+K+K FAQ T P G+ KIV+LDEADSMT AQ
Sbjct: 98 KERILELNASDDRGIQVIRDKVKTFAQLSASSTRPDGQPCPPFKIVLLDEADSMTSAAQA 157
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME+Y+ TTRF L CN +II PI SRC+ R+ L + ++ ++ +I + E ++
Sbjct: 158 ALRRTMELYTKTTRFCLVCNYVSRIIPPITSRCSKFRFKPLGENKIFERLSKISKAEKVN 217
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH---VTAEYVFKVCDEPHPLAVKEMLLN 231
+D L +V GD+R+A+ +LQS +T E V +V + E++
Sbjct: 218 INDDTLMTLVKCTGGDLRRAITSLQSCARIKEEGELITIEDVNEVAGVIPDSVITELINT 277
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C + N ++ + Y+ ++ + + + + + K +I ++ R+
Sbjct: 278 CNKNNYTTIEDFVNEVTYQAYSVAQLMEQLTEYIIQDFKLSDKAKATIFDKLSLCSSRLI 337
Query: 291 EGVNSLLQLSGLLARLCIVGSK 312
+G + L LL LC +K
Sbjct: 338 DGASEYL----LLIDLCCTIAK 355
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 173/307 (56%), Gaps = 5/307 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRPQ D+V +D V + S N+P++++ GPPG GKT+TI+ A+ + G S
Sbjct: 20 VEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIVAAAKRMYGSSS 79
Query: 60 -FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
+ LELNAS+ RGID VRN+IK FA K G K++ILDEAD+MT AQ ALRR
Sbjct: 80 AYSSMTLELNASDARGIDVVRNEIKEFAGTKQLFNKG-IKLIILDEADAMTSDAQFALRR 138
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y+ RF L CN KII +QSRC R+ L+ Q+ ++ E+ E E T D
Sbjct: 139 IIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEVAEAEKCKTTQD 198
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G++AI+ + GDMR+ LN LQST V V+ P P + ++L + N +
Sbjct: 199 GIDAILRLSGGDMRRVLNLLQSTAMSAEVVDETSVYLTSGAPLPADMDQILDWLMNHNFQ 258
Query: 239 DSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQE-IGNVHLRISEGVNSL 296
+ + I + + GYA D++ + L+ + + L ++ + + NV R++ G +
Sbjct: 259 TACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLGMLLDGMSNVEHRLAFGPDEK 318
Query: 297 LQLSGLL 303
+Q++ L+
Sbjct: 319 IQIASLV 325
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 174/307 (56%), Gaps = 7/307 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+T D+ G ++ V ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 11 IEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGSNY 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 71 RNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 129
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L++ + ++ + KE++
Sbjct: 130 ERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAH 189
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
A++ + GDMR+ALN LQ+ + VT + +++ PHP ++ ML + ++
Sbjct: 190 AALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESILKD 249
Query: 236 NMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+ + ++ + G A D+I I + + ++ ++ ++ + ++ IS G
Sbjct: 250 DWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSISRGGT 309
Query: 295 SLLQLSG 301
+Q S
Sbjct: 310 DSIQTSA 316
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 168/317 (52%), Gaps = 8/317 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP T ++V +E+ + + SG++P+ + GPPG GKTTT+ A L G
Sbjct: 41 VEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKACAHYLFGKER 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL------PPGRHKIVILDEADSMTDGAQ 113
+ VLE+NAS+DRGID VR +++ FA P K+VILDEAD M+ AQ
Sbjct: 101 VRANVLEMNASDDRGIDVVRQQVREFASTSSIFCTNSSNPVSSFKLVILDEADQMSGDAQ 160
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRR +E Y+ RF + CN KII +QSRC R+ + +L ++ + ++E +
Sbjct: 161 AALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRLKFVVQEEGV 220
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
T +GL A GDMR+ LN +QS+ G VT E V++ P P V+ ++ + +
Sbjct: 221 RFTEEGLAAAFRLCNGDMRRCLNIMQSSAMSAGEVTEESVYRTTGNPTPAEVRGIVEDML 280
Query: 234 EGNMKDSY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+ S+ K+ + + G + D++ + + +D+P K ++ ++ +V + G
Sbjct: 281 AHDYALSWEKMQQAVIEKGVSATDLVREVHHIVMAMDLPVDCKCFLLTKLADVEYYAASG 340
Query: 293 VNSLLQLSGLLARLCIV 309
+ + G+L +V
Sbjct: 341 TRESINIGGVLGAFQLV 357
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 168/317 (52%), Gaps = 18/317 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ D+ ++ V L +GN+P+++ GPPG GKT+T L + R L GP
Sbjct: 8 VEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTALAVTRELFGPQL 67
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV-----TLPPGRHKIVILDEADSMTDGAQQ 114
+K VLELNAS+DRGI+ VR KIK FA V P K++ILDEADSMT+ AQ
Sbjct: 68 YKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGVSDYPCPPFKVIILDEADSMTEDAQN 127
Query: 115 ALRRTMEIYSNTTRFALACNNSE----------KIIEPIQSRCAMLRYNKLTDAQLLSKV 164
ALRRTME YS TRF CN +IIEP+ SRCA R+ L + ++
Sbjct: 128 ALRRTMETYSKVTRFCFICNYISRLCKTIILCFRIIEPLASRCAKFRFKSLNQDVMHGRI 187
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-HVTAEYVFKVCDEPHPL 223
+ IC +E + ++ L + ++GD+R+A+ LQS +G +T++ + V
Sbjct: 188 LHICSEEGVQMGSEALATLSRVSEGDLRRAITYLQSATRLYGSSITSKDILSVSGVIPDN 247
Query: 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEI 282
++ +L C G + K + ++ GY I ++ V ++ +I + K I Q +
Sbjct: 248 VIQSLLQACTSGVFDQAQKEVTNIIAEGYPVSQIFSQVYDHVVESPEISDEQKAKICQRL 307
Query: 283 GNVHLRISEGVNSLLQL 299
+ +G + LQL
Sbjct: 308 AEADKCLLDGADESLQL 324
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 180/333 (54%), Gaps = 29/333 (8%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP + ++ G++D + + F S +P++++ GPPG GKTTTIL LAR + G +
Sbjct: 47 VEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYGSKN 106
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK----VTLPP-----GRHKIVILDEADSMTD 110
+ VLELNAS+DRGID VR +IK FA K V P G K++ILDEAD+MT
Sbjct: 107 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILDEADAMTA 166
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRR ME Y+ RF + N + K+ + SRC R++ L + + S V ++ E
Sbjct: 167 TAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRSLVDKVIEA 226
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG-----------------FGHVTAEYV 213
EN+ +E++V ++GDMR+ALN LQ+ H +T + +
Sbjct: 227 ENVRIQPQAIESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKEQPPPEHELITDDTI 286
Query: 214 FKVCDEPHPLAVKEMLLNCVE-GNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIP 271
+ PHP ++E++ + ++ I+ L G A DI+ + +TL++P
Sbjct: 287 YNCIAAPHPSDIREIMTTLLSTSDVTSCLNTINTLKMSKGLALADILSALGEQLQTLEVP 346
Query: 272 EPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
++S ++ + V R+S G + ++Q GL+
Sbjct: 347 AQTRISWLEGLAEVEWRLSGGGSEMVQTGGLVG 379
>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
Length = 417
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 186/354 (52%), Gaps = 52/354 (14%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F S +P++++ GPPG GKT+TIL LAR + G +
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFA----------------------QQKVTLPP--- 94
+ VLELNAS+DRGID VR +IK FA +Q + P
Sbjct: 108 MRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIIVGTKQIFSTAPSSG 167
Query: 95 ---GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLR 151
G K++ILDEAD+MT AQ ALRR ME Y+ TRF + N + K+ + SRC R
Sbjct: 168 SGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFR 227
Query: 152 YNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH--------- 202
++ L + + V + EKE + D ++++V ++GDMR+ALN LQ+ H
Sbjct: 228 FSPLKEKDIRRLVDTVIEKEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSK 287
Query: 203 NGFGH--------VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL---- 250
NG + +T E ++ PHP +K +L + + D ++ + L
Sbjct: 288 NGDANEQQQERETITEETIYTCIAAPHPADIKIILETLL--STSDVTSCLNTVQTLKANK 345
Query: 251 GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304
G A DII + ++L++P +++S I+ + +V R+S G + ++Q G++
Sbjct: 346 GLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGSEVIQTGGMIG 399
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 185/321 (57%), Gaps = 10/321 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRP + +++V +++ + L + +P+++ GPPG GKT+TIL AR+L
Sbjct: 18 VEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYTSKQ 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH-----KIVILDEADSMTDGAQQ 114
VLELNAS+DRGI VR +I FAQ TL ++ K++ILDEAD+MT AQ
Sbjct: 78 LSSMVLELNASDDRGIGIVREQIINFAQTS-TLNVDKNQSSVPKLIILDEADAMTKDAQS 136
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR +E +++ RF + CN KII IQSRC LR+ L++ Q+L ++ I + E ++
Sbjct: 137 ALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVQVETLT 196
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
T DG +A++ A+GDMR+ +N LQST F V V++ P P V++++ +
Sbjct: 197 VTEDGQKALLNLAEGDMRRVINILQSTAMAFKTVDEPNVYRCVGYPLPTDVEKIVKILLN 256
Query: 235 GNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+++D+Y I + + +A DI+ ++ L +P L ++ + ++ +S+G
Sbjct: 257 DSIEDAYTKIEEIRTERAFALSDILNSMHEFIFRLVVPPELLSRLLICMADIEYHLSQGC 316
Query: 294 NSLLQLSGLLARLCIVGSKNK 314
+ LQL L+ + ++N+
Sbjct: 317 SDRLQLGALIG--AFINTRNE 335
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 176/319 (55%), Gaps = 15/319 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+ + T+ LK + N+P+++ GPPG GKT+TIL L+R L G
Sbjct: 10 VEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQLFGQDL 69
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQ------KVTLPPGRHKIVILDEADSMTDGAQ 113
K VLELNAS++RGI+ VR KIK FA+Q ++P +KI+ILDEADSMT AQ
Sbjct: 70 VKSRVLELNASDERGINVVREKIKNFAKQAPKASTSASVPA--YKIIILDEADSMTQDAQ 127
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME YS +TRF L CN +IIEP+ SRC+ R+ L ++ +++ I ++ENI
Sbjct: 128 SALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEYIAQEENI 187
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQST---HNGFGH-VTAEYVFKVCDEPHPLAVKEML 229
++A++ GD+RQA+ LQS H +T + + ++ + ++
Sbjct: 188 PLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGTIPENIIDNII 247
Query: 230 LNCV-EGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHL 287
C + N K+ I ++ GYA ++ + + + I + K I I
Sbjct: 248 QVCSNKKNFKEIQSTIKQIHLFGYASAQVLLQLHDKFIENTSISDTSKSKAILSIAEADK 307
Query: 288 RISEGVNSLLQLSGLLARL 306
+++G + LQL L +L
Sbjct: 308 ALTDGADDELQLLNLAMKL 326
>gi|256090013|ref|XP_002581023.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 245
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 139/229 (60%), Gaps = 1/229 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP + D++ ++D + +K F + +P+++ GPPG GKT+TIL A+ L F
Sbjct: 5 IEKYRPSSIEDLISHDDISKTIKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQF 64
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
VLELNAS+DRGID VR ++ FA K TL G+ K+VILDEADSMT AQ ALRR +
Sbjct: 65 SSMVLELNASDDRGIDVVREQVLSFASTK-TLFAGKFKLVILDEADSMTKDAQNALRRII 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E ++ TRF L CN KII IQSRC R+ L + + + +I E + T+DG+
Sbjct: 124 EKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGI 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEML 229
+AI A GDMR+++N LQST+ V V+ P P V+ +L
Sbjct: 184 KAIYQFASGDMRKSINLLQSTYMSSKTVDGPSVYACVAYPSPTEVRSLL 232
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 141/212 (66%), Gaps = 7/212 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+ E+ V+ L+ +GN+P++++ GPPG GKT+TI+ LA+ L GP F
Sbjct: 30 VEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIALAKQLFGPDF 89
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG------RHKIVILDEADSMTDGAQ 113
+ VLELNAS+DRGI+ VRNK+K FA+Q V P +KI+ILDEADSMT+ AQ
Sbjct: 90 WRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNPGFLCPSYKIIILDEADSMTNDAQ 149
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRR +E Y+ TTRF + CN KIIEP+ SRC R+ + + + + ++ + + E++
Sbjct: 150 SALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIERLKFVADSESV 209
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF 205
++ D L+ +V + GD+R+++N LQS+ +
Sbjct: 210 TYNLDALKQLVVVSGGDLRKSVNMLQSSSTLY 241
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 16/315 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V + V L+ G++PN+++ GPPG GKT+TIL +R + G F
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMF 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
KD +LELNAS++RGI+ VR KIK F+Q + P G+ KI+ILDEADSMT AQ
Sbjct: 93 KDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQS 152
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L + +++ ++ IC E +
Sbjct: 153 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICGLEGVK 212
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
D ++IV + GD+R+A+ LQS + G H + +F++ +++ L
Sbjct: 213 IEEDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHTINTADLFEMSGVIPEYYLEDYLEV 272
Query: 232 CVEGNMKDSYKIIHHL----YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL 287
C GN + + + + Y +G E + I D P K +I ++G
Sbjct: 273 CRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLND---PQKATICDKLGECCF 329
Query: 288 RISEGVNSLLQLSGL 302
R+ +G + LQ+ L
Sbjct: 330 RLQDGGSEYLQIMDL 344
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 154/271 (56%), Gaps = 17/271 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIV + V ++ G+ PN++ GPPG GKT+ I AR + G +
Sbjct: 68 VEKYRPRNVDDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMY 127
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--PPGRH----KIVILDEADSMTDGAQQ 114
KD +LELNAS+DRGI VR+KIK FA ++ P G+ KIVILDEADSMT AQ
Sbjct: 128 KDRILELNASDDRGIQVVRDKIKSFALRRANPNGPDGKKCPPFKIVILDEADSMTGAAQT 187
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR ME S++TRF L CN +II+PI SRC R+ LTD + ++++ IC +EN+
Sbjct: 188 ALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLTDEKSIARLEYICNEENLK 247
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDE-------PHPLAVKE 227
LE IV + GD+RQA+ LQS G +Y V D PH + +
Sbjct: 248 ADRSVLEKIVQASGGDLRQAVMCLQSITRLKGK---DYEITVNDALDVIGLVPHD-QINK 303
Query: 228 MLLNCVEGNMKDSYKIIHHLYKLGYAPEDII 258
+ C +GN + K++ +L GY +I
Sbjct: 304 LWEACKKGNYNNVQKLLENLLLEGYPGSQVI 334
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 174/319 (54%), Gaps = 10/319 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ DIV + V ++ G+ PN++ GPPG GKT+ I AR + G +
Sbjct: 35 VEKYRPKNVDDIVEQTEVVNVIRQAMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMY 94
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--PPGRH----KIVILDEADSMTDGAQQ 114
KD +LELNAS+DRGI VR KIK FA +K P G+ KI+ILDEADSMT AQ
Sbjct: 95 KDRILELNASDDRGIQVVREKIKSFALRKANPIGPDGKKCPPFKIIILDEADSMTGAAQT 154
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR ME +++TRF L CN +II+PI SRC R+ L+D + +S++ IC +EN+
Sbjct: 155 ALRRIMEKEAHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSISRLEYICNEENLK 214
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG---HVTAEYVFKVCDEPHPLAVKEMLLN 231
LE IV + GD+RQA+ LQS G +T + V + +
Sbjct: 215 ADRSVLEKIVEASGGDLRQAVMCLQSITRLKGKNYEITVDDALDVIGLIPDEKINALWEA 274
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNI-FRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
C +GN + ++ +L GY +I + +V + ++ + K+ I +G +++
Sbjct: 275 CKKGNYSNVETLLENLLLEGYPGSQVIEQLNEKVIFSDELSDKQKVIIGDMLGECDYKLT 334
Query: 291 EGVNSLLQLSGLLARLCIV 309
EG + LQL + + + I
Sbjct: 335 EGSDEYLQLLSIFSTILIA 353
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 135/209 (64%), Gaps = 11/209 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQS 200
N+ +++G+ +V ++GD+R+A+ LQS
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQS 247
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 177/325 (54%), Gaps = 16/325 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ + LK S N+P+++ GPPG GKT+TIL L + L GPS
Sbjct: 25 VEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPSL 84
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ VT P +KI+ILDEADSMT
Sbjct: 85 MKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSMTA 144
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS+ TRF L CN +II+P+ SRC+ R+ L + L ++ +I ++
Sbjct: 145 DAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIAQQ 204
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYV-FKVCDEPHPLAVKEML 229
E +S+ LE ++ A+GD+R+A+ LQ+ ++ AE + +E + +++
Sbjct: 205 EALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITIAQVEELAGVVPDDII 264
Query: 230 LNCVE----GNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGN 284
VE ++ + K ++ + K G+ II + A+ ++ K I +
Sbjct: 265 KGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFLLLFK 324
Query: 285 VHLRISEGVNSLLQLSGLLARLCIV 309
R+S G + +QL L ++ V
Sbjct: 325 TDSRLSNGTDEHIQLLDLAMKITQV 349
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 184/345 (53%), Gaps = 34/345 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T SD+ + TV L+ + N+P+++ GPPG GKT+T+L LA+ L GP
Sbjct: 37 VEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPEL 96
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH----------KIVILDEADSMT 109
+ VLELNAS++RGI VR K+K FA+ ++T PP + KI+ILDEADSMT
Sbjct: 97 MRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCPPFKIIILDEADSMT 156
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L +++ I E
Sbjct: 157 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKARLEHIAE 216
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPH------ 221
KE ++ ++A++ +++GD+R+A+ LQS G G + E D
Sbjct: 217 KECVALEPGAVDALIKSSEGDLRKAITFLQSAARLVGAGRASGEGEQDTMDVDSKAVTAQ 276
Query: 222 ---------PLAVKEMLLNCVE----GNMKDSY-KIIHHLYKLGYAPEDIIGNIFR-VAK 266
P A + L+ + G S K++ ++ G++ ++ +F+ +
Sbjct: 277 IVEDIAGVIPTATIDGLVEAMRPRGSGQTYQSVAKVVENMVADGWSATQVVSQLFQAIMY 336
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311
+IP+ K +I + R+ +G + L + L RL ++ S
Sbjct: 337 DEEIPDVQKNAISIVFSEIDKRLVDGADEHLSILDLGLRLSVIMS 381
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 138/216 (63%), Gaps = 10/216 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T SD+ + TV L+ + N+P+++ GPPG GKT+TIL LA+ L GP F
Sbjct: 36 VEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPEF 95
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH---------KIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ ++T PP + K+++LDEADSMT
Sbjct: 96 VKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYRDRYPCPPFKLIVLDEADSMTQ 155
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L ++V +I +
Sbjct: 156 DAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARARVEDIATR 215
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG 206
E++S ++A++ ++GD+R+A+ LQS G
Sbjct: 216 EHVSLAPGAVDALIRCSEGDLRKAITFLQSAARLVG 251
>gi|403270485|ref|XP_003927208.1| PREDICTED: uncharacterized protein LOC101046302 [Saimiri
boliviensis boliviensis]
Length = 766
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 171/311 (54%), Gaps = 13/311 (4%)
Query: 5 RPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-FKDA 63
RP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP F+
Sbjct: 448 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 507
Query: 64 VLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDGAQQA 115
VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT AQ A
Sbjct: 508 VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSAAQAA 565
Query: 116 LRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISH 175
LRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKEN+
Sbjct: 566 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKI 625
Query: 176 TNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
+++G+ +V ++GD+R+A+ LQS G +T + + + + + C
Sbjct: 626 SDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKINGVFAACQ 685
Query: 234 EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
G+ ++ L G+A ++ + V ++ + K I +++ V +++G
Sbjct: 686 SGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGA 745
Query: 294 NSLLQLSGLLA 304
+ LQL L A
Sbjct: 746 DEYLQLISLCA 756
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 177/325 (54%), Gaps = 16/325 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+ + LK S N+P+++ GPPG GKT+TIL L + L GPS
Sbjct: 25 VEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPSL 84
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTD 110
K VLELNAS++RGI VR K+K FA+ VT P +KI+ILDEADSMT
Sbjct: 85 MKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSMTA 144
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS+ TRF L CN +II+P+ SRC+ R+ L + L ++ +I ++
Sbjct: 145 DAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIAQQ 204
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKV-CDEPHPLAVKEML 229
E +S+ LE ++ A+GD+R+A+ LQ+ ++ AE + +E + +++
Sbjct: 205 EALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITTAQVEELAGVVPDDII 264
Query: 230 LNCVE----GNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGN 284
VE ++ + K ++ + K G+ II + A+ ++ K I +
Sbjct: 265 KGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFLLLFK 324
Query: 285 VHLRISEGVNSLLQLSGLLARLCIV 309
R+S G + +QL L ++ V
Sbjct: 325 TDSRLSNGTDEHIQLLDLAMKITQV 349
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 176/311 (56%), Gaps = 8/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP T D+ G + V ++ F G +P+++ GPPG GKT+T++ LAR + G ++
Sbjct: 14 VEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLLFYGPPGTGKTSTVVALAREIYGKNY 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 74 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRII 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L L ++ ++ E++ T
Sbjct: 133 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTEALERRMNKVLSNEHLKMTTSAK 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFG-----HVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
EA++ ++GDMR+ LN LQ+ +T + ++ C P P ++ +L + ++
Sbjct: 193 EALLKLSRGDMRRVLNVLQACKATLDKPLEEEITDDTIYDCCGAPRPADLETILESILKD 252
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIGNVHLRISEGV 293
+ +Y ++ + G A D+I + ++ ++ + ++S++ ++ ++ IS G
Sbjct: 253 DWTTAYYTLNRVRGAKGLALIDLIEGFVDILESYELKSQEARISMLTQLSDIEYAISRGG 312
Query: 294 NSLLQLSGLLA 304
N +Q S ++
Sbjct: 313 NDRIQGSAVIG 323
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 141/225 (62%), Gaps = 9/225 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EK+RP++ D+ ++ V LK ++PN++ GPPG GKT+TIL AR L G
Sbjct: 39 VEKFRPRSVDDVAYQDEVVAVLKKSLEGSDLPNLLFYGPPGTGKTSTILAAARSLFGAEM 98
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
K VLELNAS++RGI+ VR K+K FAQ T P G+ KI+ILDEADSMT AQ
Sbjct: 99 MKLRVLELNASDERGINVVREKVKKFAQTTASGTRPDGKPCPPFKIIILDEADSMTSPAQ 158
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S +TRF L CN +IIEPI SRCA R+ L D L ++ ICE E I
Sbjct: 159 AALRRTMEKESKSTRFCLICNYVSRIIEPIASRCAKFRFKPLADQILTERLQGICEAEKI 218
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKV 216
S+ + ++A++ +++GDMR+A+ LQS G V+ VF++
Sbjct: 219 SYDKESIKALIDSSEGDMRKAITYLQSVARLKGDEEVSKADVFEI 263
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 172/313 (54%), Gaps = 11/313 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+V + V LK ++PN+++ GPPG GKT+TIL R + G +
Sbjct: 34 VEKYRPRSVEDVVEQSEVVAVLKKCVEGADLPNMLLYGPPGTGKTSTILAAGRQIFGDMY 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGR----HKIVILDEADSMTDGAQQ 114
+D +LELNAS++RGI+ VR KIK FAQ + P GR KI+ILDEADSMT AQ
Sbjct: 94 RDRILELNASDERGINVVRTKIKNFAQLSASNVRPDGRPCPPFKIIILDEADSMTHAAQA 153
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC R+ L + Q++ ++ IC+ E +
Sbjct: 154 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCTKFRFKSLGEDQIIERLKLICQAEGVQ 213
Query: 175 -HTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGH-VTAEYVFKVCDEPHPLAVKEMLL 230
+ ++IV + GDMR+A+ LQS + G H + + +F++ + + L
Sbjct: 214 MDGEESYKSIVRISGGDMRRAITTLQSCYRLKGPEHIINTQDLFEMSGIIPDYYLDDYLE 273
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRI 289
C GN K + + Y+ ++ + ++ +P K I ++G R+
Sbjct: 274 VCRSGNYKRLEDFVREIGYSAYSVGQMLEQFVEFIVLNENLTDPQKARICDKLGECCYRL 333
Query: 290 SEGVNSLLQLSGL 302
+G + LQ+ L
Sbjct: 334 QDGGSEYLQIMDL 346
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 189/334 (56%), Gaps = 25/334 (7%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-F 60
EKYRP+T D+V E+ V LK GN+P+++ GPPG GKT+T +A+ L GP +
Sbjct: 11 EKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQLFGPELY 70
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP---GRH-----KIVILDEADSMTDGA 112
K VLELNAS++RGI+ +R K+K FAQ V+ P G++ KI+ILDEADSMT A
Sbjct: 71 KTRVLELNASDERGINVIRTKVKTFAQTAVSENPTGKGKYPCPPFKIIILDEADSMTVDA 130
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME YSN TRF L CN +II+PI SRCA R+ L + L ++ I +E
Sbjct: 131 QSALRRTMETYSNVTRFCLICNYVSRIIDPITSRCAKFRFKPLEYSLLKERLQYIANQEG 190
Query: 173 ISHTNDG-LEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLL 230
I+ ++ L+ IV ++GD+R+A+ LQS FG+ ++ ++ ++ ++E+L
Sbjct: 191 ITLKDEKVLDTIVGHSEGDLRKAITTLQSASRMFGNAISQNHIAEISGLVPDEIIEEILT 250
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ ++ ++ + K G+A II + R L +K+ IQ + L+IS
Sbjct: 251 LSQQTDLGVIRSGVNKIIKQGFAAYQIITQLGRY--LLSEACCVKMDDIQR-SKILLKIS 307
Query: 291 E-------GVNSLLQLSGLLARLCIVGSKNKKTD 317
E G + LQL L + + SK +TD
Sbjct: 308 ECDKCLIDGADEFLQLLSLASYI----SKTLQTD 337
>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
Length = 343
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 173/309 (55%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP + ++ G +D V+ ++ F G +P+++ GPPG GKT+TI+ LAR + GP++
Sbjct: 26 VEKYRPDSLDEVYGQQDIVDTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAREIYGPNY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS+DRGID VRN+IK FA G K++ILDEAD+MT AQ +LRR +
Sbjct: 86 KNMVLELNASDDRGIDVVRNQIKNFASTMQIFSKG-FKLIILDEADAMTSVAQNSLRRII 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N S K+ + SRC R+ + ++ + ++ + KEN+S +
Sbjct: 145 EKYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGESAIQERLKNVIIKENLSINEEAE 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGF----GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
+ ++ + GDMR+ALN LQ+ + + +++ PHP ++ L + ++ +
Sbjct: 205 KTLLKLSNGDMRRALNVLQAVKASLDHDDDEIDQDMIYECIGAPHPQDIETALDSILKDD 264
Query: 237 MKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
S+ I + G A D+I + + ++ I++ + V IS+G N
Sbjct: 265 WTTSFLTIDQYKRTKGLALIDMISGFVEILNNYQLKPKTRIEILKGLSEVEYGISKGGNE 324
Query: 296 LLQLSGLLA 304
+Q S ++
Sbjct: 325 KIQTSTIIG 333
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 183/322 (56%), Gaps = 8/322 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP + +++V + + E L + +P+++ GPPG GKT+TIL A+++ P
Sbjct: 18 VEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMYAPKQ 77
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH-----KIVILDEADSMTDGAQQ 114
VLELNAS+DRGI VR +I FAQ TL ++ K+++LDEAD+MT AQ
Sbjct: 78 LSSMVLELNASDDRGIGIVREQIINFAQTS-TLSMDKNQKSMPKLIVLDEADAMTKDAQS 136
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRR +E +++ RF + CN KII IQSRC LR+ L + Q+L ++ I + E+++
Sbjct: 137 ALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQAESLT 196
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
T DG A++ A+GDMR+ +N LQST F V V++ P P V++++ +
Sbjct: 197 ITKDGQNALLNLAEGDMRRIINILQSTAMAFKTVDEWSVYQCVGYPLPNDVEKIVRILLN 256
Query: 235 GNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
+++D+Y I + + +A DI+ ++ L IP L ++ + ++ +S+G
Sbjct: 257 DSIEDAYTKIEEIRSERAFALSDILNSMHDFIFRLVIPPELLSRLLVCMADIEYHLSQGC 316
Query: 294 NSLLQLSGLLARLCIVGSKNKK 315
+ LQL L+ + S+ K
Sbjct: 317 SDRLQLGALIGAFINIRSELAK 338
>gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A]
gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A]
Length = 311
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 183/314 (58%), Gaps = 10/314 (3%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLK-VFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+EKYRP+ +D+V ++ + ++ + ++G +P+++ SG GVGKTTT LC+AR +LGP
Sbjct: 3 VEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLGPH 62
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGRHKIVILDEADSMTDGAQQALR 117
+D +LELNAS++RGI VR+K+K F+ +P KI+ILDEAD MT AQ ALR
Sbjct: 63 IQDNLLELNASDERGIGMVRDKVKRFSNFAAFEEIP---FKIIILDEADEMTADAQTALR 119
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RT+E S RF + NN KII+PIQSRCA+ ++ + + + ++++ +I + E S
Sbjct: 120 RTIEDASKICRFIIVANNISKIIDPIQSRCAVYKFTSIPEKEAMAQLKKIAKGEKASIDE 179
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
+GL+ + ++GD+R A+N LQ+ + G VTAE V + V +L + G++
Sbjct: 180 EGLKEVYEQSEGDLRHAINILQAAASS-GAVTAESVRTSAGQARKGDVDGILKRALAGDL 238
Query: 238 KDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + + L K+ G + D + + +P +I++ I RI G N
Sbjct: 239 SGARERMVELIKVYGMSESDFLKYVSAAVFRSGAGDP--GAILRIIAEYDYRILSGANPE 296
Query: 297 LQLSGLLARLCIVG 310
+QLS +LA L +G
Sbjct: 297 IQLSAMLAELGSLG 310
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 137/215 (63%), Gaps = 10/215 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+T DI E+TV L+ + N+P+++ GPPG GKT+TIL LA+ L GP +
Sbjct: 96 VEKYRPKTIDDISAQENTVRVLRKSLENANLPHMLFYGPPGTGKTSTILALAKQLFGPEA 155
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT-------LPPGRHKIVILDEADSMTDGA 112
F+ VLELNAS++RGI VR KIK FA+ ++ PP +KI+ILDEADSMT A
Sbjct: 156 FRTRVLELNASDERGITVVREKIKNFAKIAISPAVGDYPCPP--YKIIILDEADSMTQDA 213
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRR ME YS TRF L CN +IIEPI SRC+ R+ L ++ +C+KE
Sbjct: 214 QSALRRIMENYSKITRFCLICNYVTRIIEPITSRCSKFRFKPLDTTNTQKRLEYVCQKEE 273
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
+ + ++A++ ++GD+R+A+ LQS +G
Sbjct: 274 VQCGEESVQALIRCSEGDLRRAITYLQSASRLYGK 308
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 6/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +++ +E ++ + F +P++++ GPPG GKT+TIL AR L P+
Sbjct: 14 VEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTPAQ 73
Query: 61 KDA--VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
++ VLELNAS+DRGI VR +I FA T+ K++ILDEAD+MT AQ ALRR
Sbjct: 74 FNSMVVLELNASDDRGIGIVRGQILSFASTG-TMYKSAFKLIILDEADAMTIDAQNALRR 132
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E Y++ RF + CN KII +QSRC R+ L Q++ ++ + E EN++ T D
Sbjct: 133 IIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLNVTED 192
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G +A++ + GDMR+ ++ LQST +G V V+ P P ++ ++ +
Sbjct: 193 GKQALMTLSGGDMRKVISVLQSTWFAYGIVNEGNVYNCVGHPLPSDIRNIVNWLLNEPYD 252
Query: 239 DSYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
YK I L KL G A +DI+ I +D P+ + + ++ ++ + R++ G
Sbjct: 253 TCYKNIQQL-KLNKGLALQDILTEIHLCVIKIDFPDSIFIDLLCKLAEIEKRLASGCRDA 311
Query: 297 LQLSGLLA 304
+Q++ L++
Sbjct: 312 IQVNSLIS 319
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 166/315 (52%), Gaps = 14/315 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T D+ ++ V LK ++PN++ GPPG GKT+TIL L+R L G +
Sbjct: 36 VEKYRPKTVDDVAHQDEVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFGDMY 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ--QKVTLPPGR----HKIVILDEADSMTDGAQQ 114
K +LELNAS++RGI VR KIK F+Q T P GR KIVILDEADSMT AQ
Sbjct: 96 KSRILELNASDERGIQVVREKIKNFSQLTANATRPDGRPCPPFKIVILDEADSMTPSAQA 155
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME + TTRF L CN +IIEP+ SRC+ R+ L LL ++ +IC EN+
Sbjct: 156 ALRRTMEKQTKTTRFCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTAENVQ 215
Query: 175 HTNDGLEAIVF---TAQGDMRQALNNLQSTHN---GFGHVTAEYVFKVCDEPHPLAVKEM 228
++ + F GDMR+A+ QS G +T + C P V +
Sbjct: 216 CDDEAILFFFFLKSACLGDMRRAITLFQSVSRLKLGEPVLTEDVAEVACIIPKSW-VDRV 274
Query: 229 LLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHL 287
L C + + + I L GY + + V + D + K I++++
Sbjct: 275 LQTCASNSYEKLDQTIQDLVLEGYPASQLFNQLHDVLIASADYDDKQKSVIMEKLAICDH 334
Query: 288 RISEGVNSLLQLSGL 302
R+ EG + LQ+ L
Sbjct: 335 RLLEGADEYLQMMDL 349
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 135/211 (63%), Gaps = 10/211 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ D+V + V L+ S+ ++PN+++ GPPG GKT+TIL AR L G F
Sbjct: 36 VEKYRPKSVDDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMF 95
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDGA 112
K+ +LELNAS+DRGI +RNK+K FAQ + PP KIVILDEAD+MT A
Sbjct: 96 KERILELNASDDRGIAVIRNKVKTFAQLTASGTRTDGKPCPP--FKIVILDEADAMTHAA 153
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRTME + TTRF L CN +IIEPI SRC R+ L + +++ ++ ICE+EN
Sbjct: 154 QAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKVIERLRFICEQEN 213
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203
+ + IV + GD+R+A+ LQS H
Sbjct: 214 VDVEDQAYREIVDISGGDLRRAITTLQSCHR 244
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,802,724,857
Number of Sequences: 23463169
Number of extensions: 192857231
Number of successful extensions: 826930
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7830
Number of HSP's successfully gapped in prelim test: 8156
Number of HSP's that attempted gapping in prelim test: 799475
Number of HSP's gapped (non-prelim): 17437
length of query: 317
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 175
effective length of database: 9,027,425,369
effective search space: 1579799439575
effective search space used: 1579799439575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)