BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy879
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/297 (60%), Positives = 236/297 (79%), Gaps = 5/297 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QS+CA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNS 295
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV +
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGT 305
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 260 bits (665), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 196/315 (62%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E V+RLK + +G++P+++ +GPPGVGKTT L LAR L G ++
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ LELNAS++RGI+ +R K+K FA+ K P G KI+ LDEAD++T AQQALRR
Sbjct: 76 RHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLDEADALTQDAQQALRR 132
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME++S+ RF L+CN S KIIEPIQSRCA+ R+ L D + ++ I E E + T +
Sbjct: 133 TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEE 192
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-M 237
GL+AI++ A+GDMR+A+N LQ+ +T E VF V P ++EM+L ++GN +
Sbjct: 193 GLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFL 252
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSXX 297
K K+ L K G + ED++ + + L I EP K+ + +IG + R+ EG N
Sbjct: 253 KAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEII 312
Query: 298 XXXXXXXXXCIVGSK 312
++G K
Sbjct: 313 QLEALLAQFTLIGKK 327
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 257 bits (656), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 123/297 (41%), Positives = 195/297 (65%), Gaps = 6/297 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG ++ ++RLK + N+P+++ SGPPG GKT T + LAR L G ++
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D +E+NAS++RGID VR+KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 68 RDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALRR 124
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME+YS + RF L+CN +IIEPIQSRCA+ R+ + + +++EICEKE + T D
Sbjct: 125 TMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEA+++ + GD R+A+N LQ V A+ ++++ P + E++ ++GN
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFM 244
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
++ +++ L + G + EDI+ +FR ++ I + LK+ +I ++G V R++EG N
Sbjct: 245 EARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGAN 301
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 216 bits (551), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 151/218 (69%), Gaps = 5/218 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG ++ ++RLK + N+P+++ SGPPG GKT T + LAR L G ++
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D +E+NAS++RGID VR+KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 68 RDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALRR 124
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME+YS + RF L+CN +IIEPIQSRCA+ R+ + + +++EICEKE + T D
Sbjct: 125 TMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKV 216
GLEA+++ + GD R+A+N LQ V A+ ++++
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 173/301 (57%), Gaps = 8/301 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ G + + ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRVI 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + S+C R+ L + ++ + E + + +
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
+A++ + GDMR+ LN LQS + ++ + +++ C P P +K +L + +E
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILED 254
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGV 293
+ ++ ++ + G A D+I I ++ + ++ E ++ ++ ++ ++ IS+G
Sbjct: 255 DWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGG 314
Query: 294 N 294
N
Sbjct: 315 N 315
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 156/278 (56%), Gaps = 18/278 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ ++ + V LK S N+P+++ GPPG GKT+TIL L + L GP
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL 87
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTD 110
K +LELNAS++RGI VR K+K FA+ V+ P +KI+ILDEADSMT
Sbjct: 88 MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA 147
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF L CN +II+P+ S+C+ R+ L + + ++ I E+
Sbjct: 148 DAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ 207
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH------VTAEYVFKVCD-EPHPL 223
EN+ + LE I+ + GD+R+ + LQS G + +T+ V ++ PH +
Sbjct: 208 ENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDI 267
Query: 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNI 261
+ E++ G+ + K ++ K G++ ++ +
Sbjct: 268 LI-EIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 39/237 (16%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSS-GNVPNIIISGPPGVGKTTTILCLARILLGP- 58
++KYRP++ + + NE+ LK S ++P++++ GP G GK T + L + GP
Sbjct: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
Query: 59 ------------SFKDAVLELNA---------------SNDRGIDTVRNKIKMFAQ-QKV 90
+ + LELN +NDR + ++ +K AQ ++V
Sbjct: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIV--IQELLKEVAQMEQV 122
Query: 91 TLPPG------RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQ 144
R+K VI++EA+S+T AQ ALRRTME YS R + C++ II PI+
Sbjct: 123 DFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 182
Query: 145 SRCAMLRYNKLTDAQLLSKVIEICEKENIS-HTNDGLEAIVFTAQGDMRQALNNLQS 200
S+C ++R +D+++ + + ++ E I T D L+ I + G++R +L L+S
Sbjct: 183 SQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGP-PGVGKTTTILCLARILLGPSF 60
+KYRP T + + E K +S G +P+II+ P PG GKTT +A+ L
Sbjct: 18 QKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTT----VAKALCHDVN 73
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEAD-SMTDGAQQALRRT 119
D + +N S D ID VR + FA GR K++++DE D S +Q+ LR
Sbjct: 74 ADMMF-VNGS-DCKIDFVRGPLTNFASAASF--DGRQKVIVIDEFDRSGLAESQRHLRSF 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTD-------AQLLSKVIEICEKEN 172
ME YS+ + NN + II+P+QSRC ++ + + TD Q++ ++ EIC+ E
Sbjct: 130 MEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG 189
Query: 173 ISHTN-DGLEAIVFTAQGDMRQALNNLQS 200
I+ + + A+V D R+ + L S
Sbjct: 190 IAIADMKVVAALVKKNFPDFRKTIGELDS 218
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 44/320 (13%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR-------I 54
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+ I
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 55 LLGP-------------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKI 99
P F D ++E++A++ ++ R+ + V P GR K+
Sbjct: 69 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKV 122
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
++DE ++ + AL +T+E +F LA + +K+ I SRC L Q
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 160 LLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN-NLQSTHNGFGHVTAEYV---FK 215
+ ++ I +E+I+H L+ + A+G +R AL+ Q+ +G G V+ + V
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPE----DIIGNIFRVAKTLDIP 271
D+ L++ E + VE N + +I+ G E +++G + R+A P
Sbjct: 243 TLDDDQALSLVEAM---VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299
Query: 272 EPLKLSIIQEIGNVHLRISE 291
L ++ + LR+ E
Sbjct: 300 AALG----NDMAAIELRMRE 315
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 44/320 (13%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR-------I 54
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+ I
Sbjct: 31 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 55 LLGP-------------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKI 99
P F D ++E++A++ ++ R+ + V P GR K+
Sbjct: 91 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKV 144
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
++DE ++ + AL +T+E +F LA + +K+ I SRC L Q
Sbjct: 145 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 204
Query: 160 LLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN-NLQSTHNGFGHVTAEYV---FK 215
+ ++ I +E+I+H L+ + A+G +R AL+ Q+ +G G V+ + V
Sbjct: 205 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 264
Query: 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPE----DIIGNIFRVAKTLDIP 271
D+ L++ E + VE N + +I+ G E +++G + R+A P
Sbjct: 265 TLDDDQALSLVEAM---VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 321
Query: 272 EPLKLSIIQEIGNVHLRISE 291
L ++ + LR+ E
Sbjct: 322 AALG----NDMAAIELRMRE 337
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 44/320 (13%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR-------I 54
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+ I
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 55 LLGP-------------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKI 99
P F D ++E++A++ ++ R+ + V P GR K+
Sbjct: 69 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKV 122
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
++DE ++ + AL +T+E +F LA + +K+ I SRC L Q
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 160 LLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN-NLQSTHNGFGHVTAEYV---FK 215
+ ++ I +E+I+H L+ + A+G +R AL+ Q+ +G G V+ + V
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPE----DIIGNIFRVAKTLDIP 271
D+ L++ E + VE N + +I+ G E +++G + R+A P
Sbjct: 243 TLDDDQALSLVEAM---VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299
Query: 272 EPLKLSIIQEIGNVHLRISE 291
L ++ + LR+ E
Sbjct: 300 AALG----NDMAAIELRMRE 315
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 44/320 (13%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR-------I 54
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+ I
Sbjct: 12 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 71
Query: 55 LLGP-------------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKI 99
P F D ++E++A++ ++ R+ + V P GR K+
Sbjct: 72 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKV 125
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
++DE ++ + AL +T+E +F LA + +K+ I SRC L Q
Sbjct: 126 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 185
Query: 160 LLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN-NLQSTHNGFGHVTAEYV---FK 215
+ ++ I +E+I+H L+ + A+G +R AL+ Q+ +G G V+ + V
Sbjct: 186 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 245
Query: 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPE----DIIGNIFRVAKTLDIP 271
D+ L++ E + VE N + +I+ G E +++G + R+A P
Sbjct: 246 TLDDDQALSLVEAM---VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 302
Query: 272 EPLKLSIIQEIGNVHLRISE 291
L ++ + LR+ E
Sbjct: 303 AALG----NDMAAIELRMRE 318
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 44/320 (13%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR-------I 54
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+ I
Sbjct: 31 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 55 LLGP-------------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKI 99
P F D ++E++A++ ++ R+ + V P GR K+
Sbjct: 91 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKV 144
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
++DE ++ + AL +T+E +F LA + +K+ I SRC L Q
Sbjct: 145 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRCLQFHLKALDVEQ 204
Query: 160 LLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN-NLQSTHNGFGHVTAEYV---FK 215
+ ++ I +E+I+H L+ + A+G +R AL+ Q+ +G G V+ + V
Sbjct: 205 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 264
Query: 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPE----DIIGNIFRVAKTLDIP 271
D+ L++ E + VE N + +I+ G E +++G + R+A P
Sbjct: 265 TLDDDQALSLVEAM---VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 321
Query: 272 EPLKLSIIQEIGNVHLRISE 291
L ++ + LR+ E
Sbjct: 322 AALG----NDMAAIELRMRE 337
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 30/235 (12%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR-------I 54
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+ I
Sbjct: 16 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 55 LLGP-------------SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKI 99
P F D ++E++A++ ++ R+ + V P GR K+
Sbjct: 76 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKV 129
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
++DE ++ + AL +T+E +F LA + +K+ I SRC L Q
Sbjct: 130 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 189
Query: 160 LLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN-NLQSTHNGFGHVTAEYV 213
+ ++ I +E+I+H L+ + A+G +R AL+ Q+ +G G V+ + V
Sbjct: 190 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 244
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 35/226 (15%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVF-----------------SSSGNVPNIIISGPPGVGKT 45
KY P + GN+ +V +LK + SG ++ GPPG+GKT
Sbjct: 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 91
Query: 46 TTILCLARILLGPSFKDAVLELNASNDR-------GIDTVRNKIKMFAQQKVTLPP---- 94
T A L+ +LE NAS+ R G+ + + + K
Sbjct: 92 T-----AAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLN 146
Query: 95 GRHKIVILDEADSMTDGAQQALRRTMEIYSNT-TRFALACNNSE-KIIEPIQSRCAMLRY 152
G+H ++I+DE D M+ G + + + + T T L CN + P C +++
Sbjct: 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQF 206
Query: 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ + S+++ I +E + ++ ++ T +GD+RQ +N L
Sbjct: 207 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 19/207 (9%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFS---SSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP+ + +G + + K +G++ ++I+ GPPG GKTT +AR
Sbjct: 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR------ 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ +A +E ++ G+ +R I+ Q + GR I+ +DE Q A
Sbjct: 73 YANADVERISAVTSGVKEIREAIERARQNRNA---GRRTILFVDEVHRFNKSQQDAFLPH 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTD---AQLLSKVIEICEK----EN 172
+E + T A N S ++ + SR + L+ Q+L++ +E + ++
Sbjct: 130 IEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQD 189
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQ 199
I ++ AI GD R+ALN L+
Sbjct: 190 IVLPDETRRAIAELVNGDARRALNTLE 216
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 24 VFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR-GIDTVRNKI 82
V +G + I+G PGVGK+TTI L +L K AVL ++ S+ R G + +K
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107
Query: 83 KM 84
+M
Sbjct: 108 RM 109
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 5 RPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTTTILCLA------- 52
RP+T + +G E ++L+V+ + + ++++ GPPG+GKTT +A
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 53 RILLGPSFK 61
R+ GP+ +
Sbjct: 67 RVTSGPAIE 75
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
Length = 337
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 24 VFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73
V +G + I+G PGVGK+TTI L +L K AVL ++ S+ R
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR 97
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 5 RPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTTTILCLA------- 52
RP+T + +G E ++L+V+ + + ++++ GPPG+GKTT +A
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 53 RILLGPSFK 61
R+ GP+ +
Sbjct: 67 RVTSGPAIE 75
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 5 RPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTTTILCLA------- 52
RP+T + +G E ++L+V+ + + ++++ GPPG+GKTT +A
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 53 RILLGPSFK 61
R+ GP+ +
Sbjct: 67 RVTSGPAIE 75
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR-GIDTVRN 80
L + +G+ ++ I+G PGVGK+TTI L L+ + AVL ++ S+ R G + +
Sbjct: 48 LDLMPEAGSAMHVGITGVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPSSTRTGGSILGD 107
Query: 81 KIKM 84
K +M
Sbjct: 108 KTRM 111
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
Length = 338
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 1 IEKY----------RPQTFSDIVGNEDTVERLKVFSSSGNVPN-----IIISGPPGVGKT 45
IEKY RP F +G E + L VF ++ N I+ SGP G+GKT
Sbjct: 10 IEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKT 69
Query: 46 T 46
T
Sbjct: 70 T 70
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR-GIDTVRNKIKM 84
SGN + I+G PGVGK+T I L L+ + AVL ++ S+ R G + +K +M
Sbjct: 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRM 133
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 37/129 (28%)
Query: 4 YRPQ-----TFSDIVGNEDTVERLK----------VFSSSG-NVP-NIIISGPPGVGKTT 46
Y+P TF D+ G E+ +E LK F+ G +P I++ GPPG GKT
Sbjct: 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKT- 63
Query: 47 TILCLARILLG----PSFK---DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKI 99
LAR + G P F +EL G+ R + +FAQ K P I
Sbjct: 64 ---LLARAVAGEANVPFFHISGSDFVELFV----GVGAARVR-DLFAQAKAHAPC----I 111
Query: 100 VILDEADSM 108
V +DE D++
Sbjct: 112 VFIDEIDAV 120
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTT 46
++ RP++ + +G E+ ++L + + + +++++GPPG+GKTT
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTT 66
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTT 46
++ RP++ + +G E+ ++L + + + +++++GPPG+GKTT
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTT 66
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTT 46
++ RP++ + +G E+ ++L + + + +++++GPPG+GKTT
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTT 66
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTT 46
++ RP++ + +G E+ ++L + + + +++++GPPG+GKTT
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTT 66
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTT 46
++ RP++ + +G E+ ++L + + + +++++GPPG+GKTT
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTT 66
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR-GIDTVRN 80
L++ +G ++ I+G PGVGK+T+I L L+ + AVL ++ S+ R G + +
Sbjct: 47 LELMPDAGRAMHVGITGVPGVGKSTSIEALGMHLIEQGHRVAVLAVDPSSVRSGGSILGD 106
Query: 81 KIKM 84
K +M
Sbjct: 107 KTRM 110
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTT 46
++ RP++ + +G E+ ++L + + + +++++GPPG+G+TT
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTT 66
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 21 RLKVFSSSGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-DRGIDTV 78
R +F+ P I++ GPPG GKT C+A F + L + G V
Sbjct: 106 RPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV 165
Query: 79 RNKIKMFAQQKVTLPPGRHKIVILDEADSM----TDGAQQALRRTMEIY---------SN 125
R +FA + P ++ +DE DS+ DG ++ RR + S+
Sbjct: 166 R---ALFAVARCQQP----AVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218
Query: 126 TTRFAL--ACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK-VIEICEKENISHTNDGLEA 182
R + A N ++I E + R Y L +A + VI + KE + + +E
Sbjct: 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQ 278
Query: 183 IV 184
IV
Sbjct: 279 IV 280
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 37/129 (28%)
Query: 4 YRPQ-----TFSDIVGNEDTVERLK----------VFSSSG-NVP-NIIISGPPGVGKTT 46
Y+P TF D+ G E+ +E LK F+ G +P I++ GPPG G T
Sbjct: 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGAT- 63
Query: 47 TILCLARILLG----PSFK---DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKI 99
LAR + G P F +EL G+ R + +FAQ K P I
Sbjct: 64 ---LLARAVAGEANVPFFHISGSDFVELFV----GVGAARVR-DLFAQAKAHAPC----I 111
Query: 100 VILDEADSM 108
V +DE D++
Sbjct: 112 VFIDEIDAV 120
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 16/56 (28%)
Query: 8 TFSDIVGNEDTVERLK-----------VFSSSGNVP--NIIISGPPGVGKTTTILC 50
T+SD+ G +D +E+L+ F++ G P I++ GPPG GKT LC
Sbjct: 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKT---LC 259
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 29 GNVPNIIISGPPGVGKTTTILCLARIL 55
G++ II++G PGVGK+T LA+IL
Sbjct: 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 31 VPNIIISGPPGVGKTT 46
+PNI+++G PGVGKTT
Sbjct: 4 LPNILLTGTPGVGKTT 19
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 3 KYRPQ-TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55
K RP FS IVG ED L + + + +++ G G GK+T + LA +L
Sbjct: 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 7 QTFSDIVGNEDT-------VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55
Q S +VG E+ VE +K +G ++++GPPG GKT L +A+ L
Sbjct: 48 QAASGLVGQENAREACGVIVELIKSKKXAGRA--VLLAGPPGTGKTALALAIAQEL 101
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 7 QTFSDIVGNEDT-------VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55
Q S +VG E+ VE +K +G ++++GPPG GKT L +A+ L
Sbjct: 34 QAASGLVGQENAREACGVIVELIKSKKMAGRA--VLLAGPPGTGKTALALAIAQEL 87
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 49/197 (24%)
Query: 9 FSDIVGNEDTVERL-----------KVFSSSGNVP-NIIISGPPGVGKTTTILCLAR--- 53
F D+ GNE+ E + + + +P +++ GPPG GKT +A
Sbjct: 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69
Query: 54 ----ILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM- 108
+ G SF + + L AS R +F K P I+ +DE D++
Sbjct: 70 VPFFSMGGSSFIEMFVGLGASRVR---------DLFETAKKQAP----SIIFIDEIDAIG 116
Query: 109 -----------TDGAQQALRR---TMEIYS--NTTRFALACNNSEKIIEPIQSRCAMLRY 152
D +Q L + M+ + N LA N +I++P R
Sbjct: 117 KSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDR 176
Query: 153 NKLTDAQLLSKVIEICE 169
L D + +EI +
Sbjct: 177 QVLVDKPDFNGRVEILK 193
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 128 RFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+ A+ N + I+EPIQ + + A L + +E+C+KEN+ D ++
Sbjct: 176 KAAITPNTAAFILEPIQGEAGI----NIPPAGFLKEALEVCKKENVLFVADEIQ 225
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 31 VPNIIISGPPGVGKTT 46
+PNI+++G PGVGKTT
Sbjct: 11 LPNILLTGTPGVGKTT 26
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL 49
DT ++ V + II GPPG GKTTT++
Sbjct: 191 DTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV 223
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL 49
DT ++ V + II GPPG GKTTT++
Sbjct: 191 DTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV 223
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 53/200 (26%)
Query: 8 TFSDIVGNEDT-------VERLKVFSS----SGNVP-NIIISGPPGVGKTTTILCLAR-- 53
TF+D+ G ++ VE L+ S G +P +++ GPPG GKT +A
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 54 -----ILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 108
+ G F + + + AS R MF Q K P I+ +DE D++
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVR---------DMFEQAKKAAP----CIIFIDEIDAV 116
Query: 109 T-----------DGAQQALRRTM----EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYN 153
D +Q L + + N +A N +++P A+LR
Sbjct: 117 GRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP-----ALLRPG 171
Query: 154 KLTDAQLLSKVIEICEKENI 173
+ D Q++ + ++ +E I
Sbjct: 172 RF-DRQVVVGLPDVRGREQI 190
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ-KVT 91
NI++ GP G GKT LAR+L P L + G D V N I+ Q+
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED-VENIIQKLLQKCDYD 111
Query: 92 LPPGRHKIVILDEADSMT--------------DGAQQALRRTME 121
+ + IV +D+ D ++ +G QQAL + +E
Sbjct: 112 VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE 155
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ-KVT 91
NI++ GP G GKT LAR+L P L + G D V N I+ Q+
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED-VENIIQKLLQKCDYD 111
Query: 92 LPPGRHKIVILDEADSMT--------------DGAQQALRRTME 121
+ + IV +D+ D ++ +G QQAL + +E
Sbjct: 112 VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE 155
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71
GN + ++G PG GK+T + +L+ K AV+ ++ S+
Sbjct: 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 36 ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71
+SGPPG GK+T I ++L K +VL ++ S+
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL 92
NI++ GP G GKT LA+ L P L + G D ++ +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 93 PPGRHKIVILDEADSMT--------------DGAQQALRRTME 121
+ IV +DE D ++ +G QQAL + +E
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 22/85 (25%)
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
+IL+ A S D QQ R LA + S +I+P+Q ++T Q
Sbjct: 115 LILEHAGSYFDEIQQ-------------RHGLANSISSYLIKPVQ---------RITKYQ 152
Query: 160 LLSKVIEICEKENISHTNDGLEAIV 184
LL K + C +E DGLE ++
Sbjct: 153 LLLKELLTCCEEGKGEIKDGLEVML 177
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVT 91
P + ++GPPGVGKT+ +A+ LG F + L D ++I+ + V
Sbjct: 109 PILCLAGPPGVGKTSLAKSIAKS-LGRKF--VRISLGGVRD------ESEIRGHRRTYVG 159
Query: 92 LPPGR-----------HKIVILDEADSMT 109
PGR + + +LDE D M+
Sbjct: 160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMS 188
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 22/85 (25%)
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ 159
+IL+ A S D QQ R LA + S +I+P+Q ++T Q
Sbjct: 113 LILEHAGSYFDEIQQ-------------RHGLANSISSYLIKPVQ---------RITKYQ 150
Query: 160 LLSKVIEICEKENISHTNDGLEAIV 184
LL K + C +E DGLE ++
Sbjct: 151 LLLKELLTCCEEGKGEIKDGLEVML 175
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71
+I+ GPPG GKT T+ R P F+ V+ LN S+
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAF--PDFE--VVSLNFSS 1340
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71
+I+ GPPG GKT T+ R P F+ V+ LN S+
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAF--PDFE--VVSLNFSS 1340
>pdb|1JR3|E Chain E, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXI|E Chain E, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|J Chain J, Adp Bound E. Coli Clamp Loader Complex
pdb|1A5T|A Chain A, Crystal Structure Of The Delta Prime Subunit Of The Clamp-
Loader Complex Of Escherichia Coli Dna Polymerase Iii
pdb|3GLF|E Chain E, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|J Chain J, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLG|E Chain E, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|J Chain J, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLH|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|O Chain O, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLI|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 334
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 27/139 (19%)
Query: 34 IIISGPPGVGKTTTILCLARILL-----------------------GPSFKDAVLELNAS 70
++I PG+G I L+R LL P + E
Sbjct: 27 LLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGK 85
Query: 71 NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFA 130
N G+D VR + + G K+V + +A +TD A AL +T+E T F
Sbjct: 86 NTLGVDAVREVTEKLNEHARL---GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142
Query: 131 LACNNSEKIIEPIQSRCAM 149
LA E+++ ++SRC +
Sbjct: 143 LATREPERLLATLRSRCRL 161
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 24/108 (22%)
Query: 77 TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136
T +K +M+ P +IL+ A + D QQ R LA + S
Sbjct: 95 TWADKFQMYVTYCKNKPDSNQ--LILEHAGTFFDEIQQ-------------RHGLANSIS 139
Query: 137 EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV 184
+I+P+Q ++T QLL K + C +E DGLE ++
Sbjct: 140 SYLIKPVQ---------RVTKYQLLLKELLTCCEEGKGELKDGLEVML 178
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 102 LDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDA--Q 159
+ EAD+ + + A +T +S +R A CN + + + Q +L+ + DA
Sbjct: 402 IHEADTTENQSGAAFDKTSATWSALSRIAALCNRA--VFQAGQDNVPILKRSVAGDASES 459
Query: 160 LLSKVIEIC 168
L K IE+C
Sbjct: 460 ALLKCIELC 468
>pdb|1XXH|E Chain E, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|J Chain J, Atpgs Bound E. Coli Clamp Loader Complex
Length = 334
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 27/139 (19%)
Query: 34 IIISGPPGVGKTTTILCLARILL-----------------------GPSFKDAVLELNAS 70
++I PG G I L+R LL P + E
Sbjct: 27 LLIQALPGXGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLXQAGTHPDYYTLAPE-KGK 85
Query: 71 NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFA 130
N G+D VR + + G K+V + +A +TD A AL +T+E T F
Sbjct: 86 NTLGVDAVREVTEKLNEHARL---GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142
Query: 131 LACNNSEKIIEPIQSRCAM 149
LA E+++ ++SRC +
Sbjct: 143 LATREPERLLATLRSRCRL 161
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 26/137 (18%)
Query: 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDA 158
+ IL++ D TD A + + ++++ + C +EK EP A L +L +
Sbjct: 28 LAILEKQDKKTDKASEEVSKSLQAMKE-----ILCGTNEK--EPPTEAVAQLA-QELYSS 79
Query: 159 QLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD 218
LL +I L+ I F + D+ Q NN+ G T EY +
Sbjct: 80 GLLVTLIA------------DLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEY---ISA 124
Query: 219 EPHPLAVKEMLLNCVEG 235
PH L MLL E
Sbjct: 125 HPHILF---MLLKGYEA 138
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 17 DTVERLKVFSSSGNVPN-IIISGPPGVGKT 45
DT++ K+F N II+ GPPG GKT
Sbjct: 1033 DTIKHEKIFYDLLNSKRGIILCGPPGSGKT 1062
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 17 DTVERLKVFSSSGNVPN-IIISGPPGVGKT 45
DT++ K+F N II+ GPPG GKT
Sbjct: 1252 DTIKHEKIFYDLLNSKRGIILCGPPGSGKT 1281
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73
G+ + ++ + V G V +++ GP G GK+T + CL L F + + ++ N +
Sbjct: 14 GSLEVLKGINVHIREGEV--VVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLK 68
Query: 74 GIDTVRNKIK 83
DT NK++
Sbjct: 69 AKDTNLNKVR 78
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 34 IIISGPPGVGKTTTILCLARI---------LLGPSFKDAVLELNASNDRGIDTVRNKIKM 84
++++G PG GK+TT +A + L P+ K A L R TV +
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGK-AARRLGEVTGRTASTVHRLLGY 265
Query: 85 FAQ--QKVTLPPGRHKIVILDEADSMTD 110
Q + L P + ++I+DE M D
Sbjct: 266 GPQGFRHNHLEPAPYDLLIVDEVSMMGD 293
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73
G+ + ++ + V G V +++ GP G GK+T + CL L F + + ++ N +
Sbjct: 35 GSLEVLKGINVHIREGEV--VVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLK 89
Query: 74 GIDTVRNKIK 83
DT NK++
Sbjct: 90 AKDTNLNKVR 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,942,387
Number of Sequences: 62578
Number of extensions: 355538
Number of successful extensions: 1189
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 90
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)