BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy879
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1
Length = 359
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 273/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++VGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 44 VEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 103
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 104 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 163
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD+Q+L+++++I EKE++ +T+DGL
Sbjct: 164 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGL 223
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +C+ N+ ++
Sbjct: 224 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEA 283
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL++LGY+PED+IGNIFRV KT +PE LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 284 YKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 343
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 344 GLLARLC 350
>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2
SV=1
Length = 349
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 271/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+LS+++ + EKE + +T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 274 YKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 333
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 334 GLLARLC 340
>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1
Length = 349
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 271/307 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNSLLQ++
Sbjct: 274 YKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 333
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 334 GLLARLC 340
>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3
Length = 354
Score = 493 bits (1270), Expect = e-139, Method: Compositional matrix adjust.
Identities = 229/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 159 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 219 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 279 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 338
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 339 GLLARLC 345
>sp|Q05B83|RFC2_BOVIN Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1
Length = 352
Score = 493 bits (1269), Expect = e-139, Method: Compositional matrix adjust.
Identities = 228/307 (74%), Positives = 269/307 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD Q+L++++ + EKE + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +CV ++ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNSLLQ++
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 336
Query: 301 GLLARLC 307
GLLARLC
Sbjct: 337 GLLARLC 343
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/313 (72%), Positives = 267/313 (85%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E +++T DGL
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +TAE VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
YKI+ L+KLGY+PEDII NIFRV K ++I E LKL I+EIG H++I +G+NSLLQL+
Sbjct: 259 YKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLT 318
Query: 301 GLLARLCIVGSKN 313
LLA+LCI K+
Sbjct: 319 ALLAKLCIAAEKH 331
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T++RLKV + GN+P+++ISG PG+GKTT+ILCLA LLGP++
Sbjct: 24 VEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRN+IK FAQ+KV LPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 84 KEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY++LTD Q+L +++ IC+ E +++T+DGL
Sbjct: 144 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ TA+GDMRQA+NNLQST GFG V E VF+V D+P P+A+ ML C GN+ +
Sbjct: 204 AALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDVA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + ++ LG++ DI+ N+FRV KT+D IPE +L +++EIG H+ I EGV +LLQL
Sbjct: 264 LEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQL 323
Query: 300 SGLLARLC 307
SGL+ RL
Sbjct: 324 SGLVCRLA 331
>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium discoideum
GN=rfc2 PE=3 SV=1
Length = 338
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 248/315 (78%), Gaps = 1/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TV RL+ S GN+PNIIISGPPG GKT++ILCLAR LLG ++
Sbjct: 23 VEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGANY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AV ELNAS+DR +D VR+KIK FA +KVTLP GRHKI+ILDE DSMT GAQQALRR M
Sbjct: 83 KEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQQALRRIM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEPIQSRCA+LR+ +L+D+Q+L+++ E+ + E + +T+DGL
Sbjct: 143 EIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FTA+GDMRQALNNLQ+TH+GFG + AE V KVCD+PHPL +K+++ C + + K++
Sbjct: 203 AAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDFKEA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
Y + L+ GY+ DII +F + K+ +IPE KL ++EIG +LR + GVN+L+QL
Sbjct: 263 YPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTLVQL 322
Query: 300 SGLLARLCIVGSKNK 314
+GLL++LC+V K K
Sbjct: 323 TGLLSKLCLVSIKMK 337
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/308 (60%), Positives = 245/308 (79%), Gaps = 5/308 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV + LQ
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 308
Query: 299 LSGLLARL 306
L+ +LA++
Sbjct: 309 LASMLAKI 316
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 268 bits (686), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/316 (45%), Positives = 201/316 (63%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ DIV +D VERLK F N+P+++ SGPPG GKTT L L L G +++
Sbjct: 11 EKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDNYR 70
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
LELNAS++RGID +RNK+K FA+ T+ G K+V+LDEAD+MT AQQALRRT
Sbjct: 71 QYFLELNASDERGIDVIRNKVKEFAR---TVAGGNVPFKVVLLDEADNMTADAQQALRRT 127
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF LACN KIIEPIQSR A+ R+ L +++++ I + E + +
Sbjct: 128 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKA 187
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
LE I QGDMR+A+N LQ++ + +G VT E V+KV P ++EM++ ++GN +K
Sbjct: 188 LETIYDITQGDMRKAINILQAS-SVYGKVTVEAVYKVLGLAQPKEIREMIMLALQGNFLK 246
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
K+ L G + EDII I R ++IP+ LK+ ++ IG V RI EG +
Sbjct: 247 AREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDE 306
Query: 297 LQLSGLLARLCIVGSK 312
+QL+ LLA+L + G K
Sbjct: 307 IQLNALLAKLAVYGEK 322
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 266 bits (680), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 203/315 (64%), Gaps = 6/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG ++ ++RLK + N+P+++ SGPPG GKT T + LAR L G ++
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D +E+NAS++RGID VR+KIK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 68 RDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALRR 124
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME+YS + RF L+CN +IIEPIQSRCA+ R+ + + +++EICEKE + T D
Sbjct: 125 TMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
GLEA+++ + GD R+A+N LQ V A+ ++++ P + E++ ++GN
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFM 244
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ +++ L + G + EDI+ +FR ++ I + LK+ +I ++G V R++EG N +
Sbjct: 245 EARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERI 304
Query: 298 QLSGLLARLCIVGSK 312
QL LA L + K
Sbjct: 305 QLDAYLAYLSTLAKK 319
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 201/312 (64%), Gaps = 6/312 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT S++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELN+S++RGID +R K+K FA+ K P G K++ LDE+D++T AQ ALRR
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK---PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME YS+ RF L+CN KII PIQSRCA+ R++ L L+ + EI EKEN++
Sbjct: 123 TMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKG 182
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
G++AI++ ++GDMR+A+N LQ+ VT E V+KV + P +K+M + G
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 239 DSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+S + +++L G + EDI+ IFR LDI E K+ +++ IG RI EG N +
Sbjct: 243 ESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 298 QLSGLLARLCIV 309
QLS LLA++ I+
Sbjct: 303 QLSALLAKMGIL 314
>sp|Q8SQM0|RFC4_ENCCU Replication factor C subunit 4 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RFC4 PE=1 SV=1
Length = 309
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 202/312 (64%), Gaps = 9/312 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KY+P DIVGNE T+E + + S ++P+++ +GPPG GKTT LAR LLG
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGN-- 62
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ +LELNAS++RGIDTVR IK FAQ++V KI+ILDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EI+S+ RF L CN KI EPIQSRCA+LR++++ + +L ++ EI E E I T + L
Sbjct: 121 EIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+ +V + GDMRQ+LN LQ+ N G V +Y+ K+ P P ++++L ++ ++++
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEA 240
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ +++ + P D+I + FR AK ++ E LK+ IG +LRISEGVNS LQ
Sbjct: 241 LEMFDEIWEEKFDPLDLINSFFRAAKNMESYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 301 GLLARLCIVGSK 312
G+ + +GSK
Sbjct: 296 GMFWDILDMGSK 307
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 254 bits (649), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 189/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VG+ D ERL+ + ++P+++ +GP G GKT + + +A+ L G +
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDW 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+D LELNAS++RGID VR++IK FA + + ++++ LDEAD++TD AQ ALRRTM
Sbjct: 73 QDNFLELNASDERGIDVVRDRIKDFA--RSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S KII+PIQSRCA+ R+ +L D + + + EI E E + HT+DG+
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGI 190
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P ++ M+ + G+ +
Sbjct: 191 DALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAAA 250
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A DII + R D+ E + ++ +G RI+EG N +QL
Sbjct: 251 RATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQL 310
Query: 300 SGLLARLCI 308
LLA + +
Sbjct: 311 EALLASVAL 319
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 254 bits (649), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 189/309 (61%), Gaps = 3/309 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+VG+ D ERL+ + ++P+++ +GP G GKT + + +A+ L G +
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDW 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+D LELNAS++RGID VR++IK FA + + ++++ LDEAD++TD AQ ALRRTM
Sbjct: 73 QDNFLELNASDERGIDVVRDRIKDFA--RSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN TRF L+CN S KII+PIQSRCA+ R+ +L D + + + EI E E + HT+DG+
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGI 190
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V E V+ + P ++ M+ + G+ +
Sbjct: 191 DALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAAA 250
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L G A DII + R D+ E + ++ +G RI+EG N +QL
Sbjct: 251 RATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQL 310
Query: 300 SGLLARLCI 308
LLA + +
Sbjct: 311 EALLASVAL 319
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 254 bits (649), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 199/314 (63%), Gaps = 7/314 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ +++VG +D VERL+ + ++ +P+++ +G GVGKTT + LAR + G ++
Sbjct: 9 IEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDTW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 NMNFRELNASDERGIDVVRNQIKQFAR---TAPLGDATFKILFLDEADALTQDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ LTD + ++ I +KE I+
Sbjct: 126 TMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEG 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
AI + + GDMR+A+N LQ HVTAE ++ + P + ++L C+EG+ +
Sbjct: 186 AYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLARCLEGDFE 245
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ +++H L Y G AP +++ ++R ++++ + LK+ +I +G R+SEG ++
Sbjct: 246 TAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADAD 305
Query: 297 LQLSGLLARLCIVG 310
+Q+ LLAR+ G
Sbjct: 306 IQMDALLARIVRSG 319
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 253 bits (647), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 196/318 (61%), Gaps = 9/318 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T +IV E+ V RLK F N+P+++ +GPPG GKTT CLA L G +++
Sbjct: 15 EKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGENYR 74
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
+LELNAS++RGID +R+K+K FA+ +V +P KIV+LDEAD+MT AQQALRR
Sbjct: 75 QYMLELNASDERGIDVIRSKVKEFARTRVAANIP---FKIVLLDEADNMTADAQQALRRL 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF L N KIIEPIQSRCA+ R+ L ++S++ I E+E + +
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEA 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LEAI ++GDMR+A+N LQ+ G VT + V+KV HP +++M+ + GN D
Sbjct: 192 LEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIRQMIQLALAGNFND 250
Query: 240 SYKIIHHLY-KLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ + + L G + D+I + R + + IP+ K+ I G + R+ EG +
Sbjct: 251 AREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADDE 310
Query: 297 LQLSGLLARLCIVGSKNK 314
+QL+ LARL +G K K
Sbjct: 311 IQLNAFLARLAFLGKKLK 328
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 200/310 (64%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T S++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + +I EKEN++ G+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ +T E V+KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFVEA 244
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +++L G + EDI+ +FR LDI E K+ +++ IG RI EG N +QL
Sbjct: 245 REQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
Query: 300 SGLLARLCIV 309
S LLA++ I+
Sbjct: 305 SALLAKMGIL 314
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 199/313 (63%), Gaps = 8/313 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ ++VG+++ ++RLK + ++P+++ SG PGVGKTT LCLA+ L G ++
Sbjct: 6 VEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNTW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 KENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + EI EKE+I+ G+
Sbjct: 125 EKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSGM 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ ++ ++KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFVEA 244
Query: 241 YKIIHHLYKL----GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
LYKL G + EDII IFR L+I E K+ +++ IG RI EG N
Sbjct: 245 R---EQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANER 301
Query: 297 LQLSGLLARLCIV 309
+QLS LLA++ I+
Sbjct: 302 IQLSALLAKMGIL 314
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 196/316 (62%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ +IV ++ VERLK F N+P+++ +GPPG GKTT L L R L G +++
Sbjct: 9 EKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNNYR 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVT--LPPGRHKIVILDEADSMTDGAQQALRRT 119
LELNAS++RGID +RNK+K FA+ + +P K+++LDEAD+MT AQQALRRT
Sbjct: 69 QYFLELNASDERGIDVIRNKVKEFARTVASNNVP---FKVILLDEADNMTADAQQALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TTRF LACN KIIEPIQSR A+ R+ L +++++I+I + E + G
Sbjct: 126 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKG 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
+E I QGDMR+A+N +Q+ + +G +T E V+KV P ++EML + G ++
Sbjct: 186 IETIFDITQGDMRKAINVIQAA-SAYGKITVETVYKVLGLAQPKEIREMLHLALSGKFLQ 244
Query: 239 DSYKIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
K+ L G + EDII + + + IP+ LK+ ++ G V RI EG +
Sbjct: 245 ARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDE 304
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LA+L + K
Sbjct: 305 IQLSAFLAKLALHAEK 320
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 251 bits (642), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 194/316 (61%), Gaps = 9/316 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+T DIV + ++RLK F N+P+++ +GPPG GKTT L L L G ++
Sbjct: 12 EKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYT 71
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+ LELNAS++RGID +RNK+K FA+ T+ PG K+V+LDEAD+MT AQQALRRT
Sbjct: 72 EYFLELNASDERGIDVIRNKVKEFAR---TVIPGDIPFKVVLLDEADNMTADAQQALRRT 128
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME+Y+ TRF LACN KIIEPIQSR A+ R+ L +++++I I + E +
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKA 188
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
LE I GDMR+++N LQ+ + +G ++ E VFKV P V+EM+ ++G
Sbjct: 189 LETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQ 247
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
+ K+ L G + EDI+ I R + + I E L++ ++ IG RI EG +
Sbjct: 248 ARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDE 307
Query: 297 LQLSGLLARLCIVGSK 312
+QLS LLA++ I G+K
Sbjct: 308 IQLSALLAKMAIYGNK 323
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 251 bits (640), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 192/317 (60%), Gaps = 6/317 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP +DIVG +D VERL + SGN+P+++ +G GVGKTT + LAR G S+
Sbjct: 9 IEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDSW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 QMNFRELNASDERGIDVVRNQIKEFAR---TRPAGDAAFKILFLDEADALTTDAQAALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ L + ++ I +E++ T +
Sbjct: 126 TMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTPE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++A+V+ AQGDMR+A+N LQ + A V+ + P + E+L + G+
Sbjct: 186 AMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDFD 245
Query: 239 DSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ ++ L + G AP ++I +R D+ LK+ +I +G R+SEG +S +
Sbjct: 246 GAEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSDI 305
Query: 298 QLSGLLARLCIVGSKNK 314
Q+ L+AR + G++ +
Sbjct: 306 QMEALIARFVLAGTRKR 322
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 198/310 (63%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + +I EKE ++ G+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ VT E V+KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFVEA 244
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +++L G + EDI+ +FR LDI E K+ +++ IG RI EG N +QL
Sbjct: 245 REQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
Query: 300 SGLLARLCIV 309
S LLA++ I+
Sbjct: 305 SALLAKMGIL 314
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 198/310 (63%), Gaps = 2/310 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++VG+ + ++RL + ++P+++ SG PGVGKTT L LA+ L G ++
Sbjct: 6 VEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELN+S++RGID +R K+K FA+ K + K++ LDE+D++T AQ ALRRTM
Sbjct: 66 RENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS+ RF L+CN KII PIQSRCA+ R++ L L+ + +I EKE ++ G+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI++ ++GDMR+A+N LQ+ VT E V+KV + P +K+M + G ++
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFVEA 244
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ +++L G + EDI+ +FR LDI E K+ +++ IG RI EG N +QL
Sbjct: 245 KEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
Query: 300 SGLLARLCIV 309
S LLA++ I+
Sbjct: 305 SALLAKMGIL 314
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 248 bits (633), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 194/315 (61%), Gaps = 5/315 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ DIV + VERLK F N+P+++ +GPPG GKTT LA L G ++
Sbjct: 10 VEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGENY 69
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ +LELNAS++RGI+ +R K+K FA+ + T P KIV+LDEAD+MT AQQALRR M
Sbjct: 70 RQYMLELNASDERGINVIREKVKEFARSR-TPPEIPFKIVLLDEADNMTSDAQQALRRLM 128
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+ TRF L N KII+PIQSRCA R+ L+ ++ ++ I E E + + + L
Sbjct: 129 ELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEAL 188
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AI ++GDMR+A+N LQ+ + G VT + V++V P V+EML ++G+ +
Sbjct: 189 DAIYEISEGDMRKAINVLQAA-SYLGKVTVDAVYRVVGMAKPREVREMLATALKGDFTAA 247
Query: 241 YKIIHH-LYKLGYAPEDIIGNIFR--VAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
++ + + G + ED+ I R + L +PE L++ +G VH R+ EG + +
Sbjct: 248 RSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVEGSDDDI 307
Query: 298 QLSGLLARLCIVGSK 312
QLS LA L ++ K
Sbjct: 308 QLSAFLAWLTMMSRK 322
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 191/317 (60%), Gaps = 6/317 (1%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ D++G++ RL + SGN+P+++ SGPPGVGKT + LAR L G ++
Sbjct: 9 EKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGETWH 68
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRT 119
+ELNAS++RGID VRN IK FA+ T P G + KI+ LDEAD++T AQ ALRRT
Sbjct: 69 SNFIELNASDERGIDVVRNNIKNFAR---TAPLGEAKFKIIFLDEADALTSDAQSALRRT 125
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME Y+ T RF ++CN S KIIEPIQSRCA+ R+ L + + + I + E + DG
Sbjct: 126 MERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG 185
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+++ A+GDMR+A+N LQS +TA+ +++ P +++ML + G D
Sbjct: 186 MDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQFMD 245
Query: 240 SY-KIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
S K+ L G + DII I+R L + E + ++++ IG R++EG + +Q
Sbjct: 246 SRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASERIQ 305
Query: 299 LSGLLARLCIVGSKNKK 315
+ LLA + G+ K
Sbjct: 306 IEALLAHFKMQGAARSK 322
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 247 bits (630), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 187/308 (60%), Gaps = 3/308 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT D++G+E+ V RLK + S ++ +++ SGP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS++RGID VR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +SN RF L+CN S +II+PIQSRCA+ R++ L D + ++ I +E+I T DGL
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ V V+ + P ++ M+ + ++G+ S
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ L + G A DII + R DI + + +++ IG RI+ G N +QL
Sbjct: 255 RATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERVQL 314
Query: 300 SGLLARLC 307
+LA L
Sbjct: 315 EAMLASLA 322
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 204/322 (63%), Gaps = 17/322 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
IEKYRP + + G E+T+ERL + ++ N+P+++ SGPPGVGKT + + +AR + G
Sbjct: 16 IEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 75
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 117
+++ ELNAS++RGID VRNKIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 76 WRENFTELNASDERGIDIVRNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSALR 132
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTME +S+ RF L+CN S KIIEPIQSRCA+ R+ +L+D + ++ I +++++S T+
Sbjct: 133 RTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITD 192
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
G EA+++ AQGDMR+A+N+LQ+ + ++ E +++ +P +K ++ + G
Sbjct: 193 GGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIETALRG 252
Query: 236 NMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLD--------IPEPLKLSIIQEIGNVH 286
N + + K ++ LY+ G + EDI+G I+RV +D + E + ++ IG
Sbjct: 253 NFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETD 312
Query: 287 LRISEGVNSLLQLSGLLARLCI 308
R++EG + +QL LLA +
Sbjct: 313 FRLTEGASEKIQLEALLAHFAL 334
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 200/323 (61%), Gaps = 13/323 (4%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP++ +IV E+ V+RLK F + N+P+++ +GPPG GKTT L LA L G S+
Sbjct: 7 VEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGESW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
+D LELNAS++RGID +R++IK +A+ TLP G K+VILDEAD+MT AQQALRR
Sbjct: 67 RDNTLELNASDERGIDVIRSRIKDYAR---TLPIGDVPFKLVILDEADNMTGDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME++S TRF L N + KIIEPIQSRCA+ R+ L ++ I ++E I+ +
Sbjct: 124 TMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDG 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LEAI +QGD+R+A+N LQ+ +VT E V+ P V+EM+ + ++GN+
Sbjct: 184 ALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNLL 243
Query: 238 --KDSYKIIHHLYKLGYAPEDIIGNIFR---VAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+D +++ LY G + DII I R K++ + + ++ +G + RI EG
Sbjct: 244 EARDKLRLL--LYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEG 301
Query: 293 VNSLLQLSGLLARLCIVGSKNKK 315
+ +QL LL++L +V K K
Sbjct: 302 SDDEIQLMALLSKLALVSKKAAK 324
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 244 bits (623), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 184/295 (62%), Gaps = 3/295 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRPQT DIVG+E ERLK + + ++P+++ +GP GVGKTT +A+ + G +
Sbjct: 15 IEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDW 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ LELNAS+ RGID VR++IK FA + + H+I+ LDEAD++T AQ ALRRTM
Sbjct: 75 RENFLELNASDQRGIDVVRDRIKSFA--RASFGGYDHRIIFLDEADALTSDAQSALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E +S+ TRF L+CN S +II+PIQSRCA+ R++ L DA + ++ I + E I T+DG+
Sbjct: 133 EQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGV 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+V+ A GDMR+A+N LQ+ G V E V+ + P ++EM+ ++G+ +
Sbjct: 193 DALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDFTAA 252
Query: 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+ L +G A DII + R D+ E + +++ IG RI+ G +
Sbjct: 253 RSQLETLLTDVGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEADYRITAGAS 307
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 244 bits (622), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 202/322 (62%), Gaps = 17/322 (5%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
IEKYRP + + G ++T+ERLK + ++ N+P+++ SGPPGVGKT + + +AR + G
Sbjct: 16 IEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 75
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 117
+++ ELNAS++RGID VRNKIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 76 WRENFTELNASDERGIDIVRNKIKNFAK---TAPIGGAPFKIIFLDEADALTADAQSALR 132
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTME +S+ RF L+CN S KIIEPIQSRCA+ R+ +L+D + ++ I + +S T
Sbjct: 133 RTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITE 192
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
G EA+++ AQGDMR+A+N+LQ+ + ++ E +++ +P +K ++ + G
Sbjct: 193 GGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRG 252
Query: 236 NMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLD--------IPEPLKLSIIQEIGNVH 286
N + + K ++ LY+ G + EDI+G I+RV +D + E ++++ IG
Sbjct: 253 NFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETD 312
Query: 287 LRISEGVNSLLQLSGLLARLCI 308
R++EG + +QL LLA +
Sbjct: 313 FRLTEGASEKIQLEALLAHFAL 334
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 199/324 (61%), Gaps = 21/324 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
IEKYRP + G E+T+ERLK + ++ N+P+++ SGPPGVGKT + + +AR + G
Sbjct: 12 IEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALR 117
+++ ELNAS++RGID VR KIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 72 WRENFTELNASDERGIDVVRTKIKNFAK---TAPMGGAEFKIIFLDEADALTSDAQSALR 128
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
RTME +SN RF L+CN S +IIEPIQSRCA+ R+ +L+D + ++ I + + +S T
Sbjct: 129 RTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITE 188
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGF----GHVTAEYVFKVCDEPHPLAVKEMLLNCV 233
DG EA+V+ +QGDMR+A+N+LQ+ F ++ +++ +P ++ ++ +
Sbjct: 189 DGYEALVYVSQGDMRKAVNSLQAA--AFVEPNKSISRGTIYRTTATANPEDIRNLIETAL 246
Query: 234 EGNMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLD--------IPEPLKLSIIQEIGN 284
GN + + K ++ LY+ G + EDI+G I+R +D + E + ++ IG
Sbjct: 247 RGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGE 306
Query: 285 VHLRISEGVNSLLQLSGLLARLCI 308
+ R++EG +QL LLA +
Sbjct: 307 IDFRLTEGATEKIQLEALLAHFAL 330
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 241 bits (615), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 186/311 (59%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E + RLK + ++PN++ +GP GVGKTT L LAR +LG +
Sbjct: 9 VEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGEYW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVR IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 69 RQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRREM 126
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R+ L Q++ ++ I EKEN+ + L
Sbjct: 127 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEYEAHAL 186
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E IV+ A+GD+R+A+N LQS + +T ++ V P V++M+ ++G ++
Sbjct: 187 ETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILDGKFMEA 246
Query: 241 YKIIHHLYKL-GYAPEDIIGNIF----RVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ + L G + ED++ I+ R+A ++ + +I IG RI EG N
Sbjct: 247 RDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFRIREGANP 306
Query: 296 LLQLSGLLARL 306
+QL LLAR
Sbjct: 307 RIQLEALLARF 317
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 187/315 (59%), Gaps = 2/315 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VG +D V RL+ + +GN+P+++ +G G+GKTT + LAR G S+
Sbjct: 9 IEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDSW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ E+NAS++RGID VRN+IK FA+ L KI+ LDEAD++T AQ ALRRTM
Sbjct: 69 QTNFREMNASDERGIDVVRNQIKEFARTS-PLAGATFKILFLDEADALTTDAQAALRRTM 127
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ T RF L+CN S KII+PIQSRCA+ R+ L ++ + I E ++ T L
Sbjct: 128 ETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGAL 187
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+AIV+ A GDMR+A+N LQ + E +F++ P + E+L + G ++
Sbjct: 188 DAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDELLDLSIGGRFDEA 247
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299
+ + L + G AP ++I +R DI LK+ +I +G R+SEG +S +Q+
Sbjct: 248 EQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSDIQM 307
Query: 300 SGLLARLCIVGSKNK 314
LLAR + +++
Sbjct: 308 EALLARFVLAAEQHR 322
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 238 bits (607), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 190/318 (59%), Gaps = 6/318 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ DI+G ++ +ERL+ + + +P+++ +G G GKTT + LAR G +
Sbjct: 9 IEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGEDW 68
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRR 118
+ ELNAS++RGID VRN+IK FA+ T P G KI+ LDEAD++T AQ ALRR
Sbjct: 69 QMNFRELNASDERGIDVVRNQIKQFAR---TSPFGGSTFKILFLDEADALTTDAQSALRR 125
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y+ T RF L+CN S KII+PIQSRCA+ R+ L + V I +N++ T +
Sbjct: 126 TMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTEE 185
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
++AI + AQGDMR+A+N LQ ++ + +F + P + +++ + GN
Sbjct: 186 VIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDDLIDLSLAGNFL 245
Query: 239 DSYKIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ + L+ G AP+++I ++R D+PE +K+ +I +G R+SEG S +
Sbjct: 246 GAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSDI 305
Query: 298 QLSGLLARLCIVGSKNKK 315
Q+ L+A+ + G +N +
Sbjct: 306 QMQSLIAKFVMYGGRNSR 323
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 194/312 (62%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ S+I G ++ +++LK F +P+++ +G G GKT+T + LA L G S+K
Sbjct: 7 EKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGESWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ +E+NASN+ GID +RNKIK A+ + + P G KI+ LDEAD +T AQ ALRRTME
Sbjct: 67 ENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRTME 125
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+YS TTRF ACN S KII PIQSR ++R+ + D + K+ EI + E + ++ +E
Sbjct: 126 MYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESME 185
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+V + GDMR+A+N LQ+ + G ++ + ++++ P +V +++ + G ++
Sbjct: 186 AMVEVSGGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPESVNKLISRAINGLFDEAR 244
Query: 242 KIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I+ + + G + DI+ ++ + + +P K+ II+ + + RI EG N +QL
Sbjct: 245 QIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLD 304
Query: 301 GLLARLCIVGSK 312
L+AR+ +GSK
Sbjct: 305 ALIARIADIGSK 316
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 186/311 (59%), Gaps = 7/311 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DI+G + V RL+ + ++PN++ +GP GVGKTTT + L + +LG +
Sbjct: 6 VEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVRN IK F + K P R I+ LDE D+MT AQ ALRR M
Sbjct: 66 RQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T F L+CN S KII+PIQSRCA+ R+ + ++ +++ IC E +T+ G+
Sbjct: 124 EMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDGGI 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI + A+GDMR+A+N LQ+ + V + V++V + P V ++ + G+ +
Sbjct: 184 EAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFMGA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFR-VAKTL---DIPEPLKLSIIQEIGNVHLRISEGVNS 295
++ L G + ED++ I++ V+K + + + + +I+ I + RI EG N
Sbjct: 244 RNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGANP 303
Query: 296 LLQLSGLLARL 306
+QL LL +
Sbjct: 304 RIQLEALLTQF 314
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 228 bits (581), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
ME+Y+ TRF L N IIEPIQSR M+R++ L + +++ I + E + ++D
Sbjct: 124 IMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LEAI QGDMR+A+N LQ +T E V K P ++E L + GN
Sbjct: 184 ALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRETLNDAFRGNFG 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K + +I + G +I+ + R A LD+PE LK I I H I G + L
Sbjct: 244 KAATQIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAILRGAHGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIYGALAKI 312
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 228 bits (580), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F +GN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N IIEPIQSR M+R++ L + +++ I E E + ++D
Sbjct: 124 IMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM- 237
LEAI QGDMR+A+N LQ VT E V K P ++E L V+G+
Sbjct: 184 ALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVKGSFG 243
Query: 238 KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
K + +I + G +II I R LD+ E +K I I H I G + L
Sbjct: 244 KAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAILRGAHGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIYGALAKV 312
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 227 bits (578), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 178/309 (57%), Gaps = 6/309 (1%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
EKYRP++F ++V E+ RL+ F SGN+P+++ GPPG GKTT L LAR L G +
Sbjct: 7 FEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRR 118
++ LELNAS++RGI+ +R ++K FA+ T P G+ K+VILDEAD+MT AQQALRR
Sbjct: 67 RENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
MEIY+ TRF L N IIEPIQSR M+R+N L ++S++ I E E + ++D
Sbjct: 124 IMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDD 183
Query: 179 GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMK 238
LE I QGDMR+A+N LQ +T + V + P ++E L ++GN
Sbjct: 184 ALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALKGNFS 243
Query: 239 DSYKIIHHLYKLGYAPE-DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLL 297
+ I+ G E +II I R LD+PE +K + I H G L
Sbjct: 244 KAMTQIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATLRGARGLT 303
Query: 298 QLSGLLARL 306
Q+ G LA++
Sbjct: 304 QIFGALAKI 312
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+YK I L L G A DI+ + +D P +++ ++ ++ ++ R+S G + +Q
Sbjct: 261 AYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQ 320
Query: 299 LSGLLA 304
LS L+A
Sbjct: 321 LSSLIA 326
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 187/314 (59%), Gaps = 7/314 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQT D+VG E V RLK + ++PNI+ +G GVGKTT L LA+ LLG +
Sbjct: 6 VEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGEYW 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS+ RGIDTVRN+IK F + K P R I+ LDE D+MT AQQALRR M
Sbjct: 66 QQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFR--IIFLDEVDNMTKDAQQALRREM 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ T+ F L+CN S KII+PIQSRCA+ R++ + A ++ ++ I +E I L
Sbjct: 124 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSAL 183
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
E IV+ QGDMR+++N LQ++ VT E V+ V P V++++ + + ++
Sbjct: 184 ENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFMEA 243
Query: 241 YKIIHHLYKL-GYAPEDIIGNIFRVAKTLD----IPEPLKLSIIQEIGNVHLRISEGVNS 295
++ + + G + +D+I ++ + IPE + +++ + RI EG N
Sbjct: 244 RDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGSNP 303
Query: 296 LLQLSGLLARLCIV 309
LQL LL++ +V
Sbjct: 304 RLQLEALLSKFLLV 317
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQ 298
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N +Q
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 321
Query: 299 LSGLLA 304
LS L+A
Sbjct: 322 LSSLIA 327
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 188/317 (59%), Gaps = 8/317 (2%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ DI+ E+ + LK F N+P+++ +GPPG GKTT L LA L G +++
Sbjct: 6 EKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDAWR 65
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRT 119
+ LELNAS++RGID +R+K+K FA+ K P G KIV LDEAD++T AQQALRR
Sbjct: 66 ENFLELNASDERGIDVIRHKVKEFARAK---PIGDVPFKIVFLDEADALTRDAQQALRRI 122
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME YS +TRF L+CN KIIEPIQSR + ++ L + I + E + N+
Sbjct: 123 MEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILENED 182
Query: 180 --LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNM 237
+ A+ A+GD+R+A+N LQ+ +T + ++++ P + E+L ++GN
Sbjct: 183 EIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQGNF 242
Query: 238 KDSYK-IIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSL 296
++ +I + K G + ED+I I + +L I + KL I+ +IG++ RI EG + L
Sbjct: 243 LEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRIVEGADDL 302
Query: 297 LQLSGLLARLCIVGSKN 313
+QL LLA L + KN
Sbjct: 303 VQLDALLAWLGLGKYKN 319
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 190/312 (60%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP++ S+I G ++ +++LK F +P+++ +G G GKT+T + LA L G S+K
Sbjct: 7 EKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDSWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ ++E+NASN+ GID +RNKIK A+ K + P G KI+ LDEAD +T AQ ALRRTME
Sbjct: 67 ENMVEMNASNENGIDVIRNKIKDIARIKPSNPLG-FKILFLDEADQLTAEAQAALRRTME 125
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
IYS TTRF +CN S KII PIQSR ++R+ + D + K+ EI + E + +
Sbjct: 126 IYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMH 185
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
A+V + GDMR+A+N LQ+ + G ++ + ++++ P +++M+ + G ++
Sbjct: 186 ALVEVSAGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPEKIQKMISRAINGLFDEAR 244
Query: 242 KIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I+ L G + DI+ ++ ++ I K+ II+ + + RI EG N +QL
Sbjct: 245 EIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDRIQLD 304
Query: 301 GLLARLCIVGSK 312
L+A+L +GS+
Sbjct: 305 ALIAKLAEIGSR 316
>sp|Q5JHP2|RFCS_PYRKO Replication factor C small subunit OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rfcS PE=1
SV=1
Length = 866
Score = 221 bits (564), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 176/286 (61%), Gaps = 13/286 (4%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+GN+P + V TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 590 AGNMPTV-------VHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR 642
Query: 88 QKVTLPPG--RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQS 145
K P G KI+ LDEAD++T AQQALRRTME++SN RF L+CN S KIIEPIQS
Sbjct: 643 TK---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQS 699
Query: 146 RCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF 205
RCA+ R+ L D + ++ I E E + T +GL+AI++ A+GD+R+A+N LQ+
Sbjct: 700 RCAIFRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALD 759
Query: 206 GHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRV 264
+T E VF V P V+EM+ +EGN +K K+ L + G + ED++ + +
Sbjct: 760 TKITDENVFLVASRARPEDVREMMTLALEGNFLKAREKLRDILLRQGLSGEDVLIQMHKE 819
Query: 265 AKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310
L IPE K+++ +IG + R+ EG N ++QL LLA+ I+G
Sbjct: 820 VFNLPIPEDKKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIMG 865
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ DIVG + V+RLK + +G++P+++ +GPPGVGK T
Sbjct: 16 VEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>sp|Q8U4J3|RFCS_PYRFU Replication factor C small subunit OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rfcS PE=1
SV=1
Length = 852
Score = 221 bits (564), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 176/286 (61%), Gaps = 9/286 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+GN+P + V TT L LAR L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 575 AGNMPTV-------VHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR 627
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
K + KI+ LDEAD++T AQQALRRTME++S+ RF L+CN S KIIEPIQSRC
Sbjct: 628 TK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 686
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ L D + ++ I E E + T +GL+AI++ A+GDMR+A+N LQ+
Sbjct: 687 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK 746
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
+T E VF V P ++EM+L ++GN +K K+ L K G + ED++ + +
Sbjct: 747 ITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVF 806
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
L I EP K+ + +IG + R+ EG N ++QL LLA+ ++G K
Sbjct: 807 NLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIGKK 852
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ DIVG E V+RLK + +G++P+++ +GPPGVGK T
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>sp|O57852|RFCS_PYRHO Replication factor C small subunit OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rfcS PE=3 SV=1
Length = 855
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 176/286 (61%), Gaps = 9/286 (3%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+GN+P + V TT L L+R L G +++ LELNAS++RGI+ +R K+K FA+
Sbjct: 577 AGNMPTV-------VHNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFAR 629
Query: 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
K + KI+ LDEAD++T AQQALRRTME++S+ RF L+CN S KIIEPIQSRC
Sbjct: 630 TK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 688
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207
A+ R+ L D + ++ I E E + T +GL+AI++ A+GDMR+A+N LQ+
Sbjct: 689 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK 748
Query: 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266
+T E VF V P ++EM+L ++GN +K K+ L K G + ED++ + +
Sbjct: 749 ITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLIQMHKEVF 808
Query: 267 TLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
L I EP K+ + +IG + R+ EG N ++QL LLA+ +VG K
Sbjct: 809 NLPIDEPTKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTLVGKK 854
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47
+EKYRPQ +IVG E V+RLK + +G++P+++ +GPPGVGK T
Sbjct: 18 VEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 183/312 (58%), Gaps = 3/312 (0%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
EKYRP+ D++G ++ + LK F +G++P++I +GP G GKT+T + L L G +K
Sbjct: 7 EKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDDWK 66
Query: 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 121
+ LELNAS++RGID +RN IK FA+ + + G KI+ LDEAD +T+ AQ ALRRTME
Sbjct: 67 ENFLELNASDERGIDIIRNNIKDFAKIRPSNKLG-FKIIFLDEADQLTNEAQAALRRTME 125
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
++ +TTRF +CN S KII PIQSRC +LR+ L + K+ EI + E +D L+
Sbjct: 126 MFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDSLD 185
Query: 182 AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241
AI + GDMR+A+N +Q+ + G + ++++ E + K ++ + G D+
Sbjct: 186 AIYEISDGDMRKAINVMQAIQST-GEIKPSKIYEISGEINKNEYKNLISLSLNGAFSDAK 244
Query: 242 KIIHH-LYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
++ L G + DII + + I KL I+ + RIS+G + +Q+
Sbjct: 245 SLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQMD 304
Query: 301 GLLARLCIVGSK 312
LLAR+ +GS+
Sbjct: 305 ALLARISYIGSE 316
>sp|Q5UQ47|RFCS1_MIMIV Putative replication factor C small subunit R395 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R395 PE=3 SV=1
Length = 319
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 182/306 (59%), Gaps = 2/306 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP D++ +++ +++ +F ++II+G PGVGKT+T+ C+A+ LLG
Sbjct: 8 IEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLGEDM 67
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LE+NA+ DRG+ ++ I F ++ + KI++LDEAD MT Q + +
Sbjct: 68 SQGYLEINAAEDRGVRSISTIIPPFCKK--VFAANKSKIILLDEADIMTSKCQYDINNMI 125
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
+ + T+F CN+S KIIE IQS C +LR+ KLTD Q+ + +IC E I + GL
Sbjct: 126 KKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGL 185
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
I + + GDMR+++N+LQ T F +T V K+C P P +++++ C+E N++ +
Sbjct: 186 RTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCLESNLEKA 245
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS 300
+I++++ KL Y DI+ + V K D+ E L+L +I + + IS+G+ S LQL+
Sbjct: 246 DEIMNNIIKLDYCYFDIVTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRSKLQLT 305
Query: 301 GLLARL 306
G++ RL
Sbjct: 306 GMICRL 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,999,468
Number of Sequences: 539616
Number of extensions: 4755278
Number of successful extensions: 22309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 1271
Number of HSP's that attempted gapping in prelim test: 21328
Number of HSP's gapped (non-prelim): 1667
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)