Query psy879
Match_columns 317
No_of_seqs 265 out of 3125
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 19:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0991|consensus 100.0 9.3E-62 2E-66 383.3 27.1 313 1-313 18-330 (333)
2 PLN03025 replication factor C 100.0 2.2E-54 4.7E-59 378.7 37.2 312 1-312 4-315 (319)
3 KOG0989|consensus 100.0 2.2E-53 4.7E-58 349.1 29.3 310 1-310 27-345 (346)
4 PRK14952 DNA polymerase III su 100.0 3.2E-48 6.8E-53 357.4 36.7 304 2-308 5-362 (584)
5 PRK06305 DNA polymerase III su 100.0 4.4E-48 9.6E-53 350.3 36.0 308 2-312 9-352 (451)
6 PRK08451 DNA polymerase III su 100.0 6.7E-48 1.5E-52 350.3 37.2 306 1-311 5-337 (535)
7 PRK14964 DNA polymerase III su 100.0 4.9E-48 1.1E-52 348.3 35.5 306 2-311 5-356 (491)
8 PRK14961 DNA polymerase III su 100.0 9.9E-48 2.1E-52 341.4 36.4 305 2-309 8-360 (363)
9 PRK14965 DNA polymerase III su 100.0 4E-48 8.6E-53 360.5 35.4 305 2-309 8-361 (576)
10 PRK14955 DNA polymerase III su 100.0 6.5E-48 1.4E-52 346.2 35.2 307 1-310 7-374 (397)
11 PRK14956 DNA polymerase III su 100.0 5.3E-48 1.1E-52 344.2 34.1 304 2-308 10-368 (484)
12 PRK07003 DNA polymerase III su 100.0 9.9E-48 2.2E-52 353.9 35.3 308 2-312 8-361 (830)
13 PRK14958 DNA polymerase III su 100.0 9.8E-48 2.1E-52 351.7 34.7 307 2-311 8-358 (509)
14 PRK14954 DNA polymerase III su 100.0 1.5E-47 3.2E-52 355.2 36.1 306 2-310 8-374 (620)
15 PRK14949 DNA polymerase III su 100.0 2E-47 4.3E-52 358.2 35.8 305 2-309 8-357 (944)
16 PRK09111 DNA polymerase III su 100.0 3.4E-47 7.3E-52 352.5 36.5 306 2-310 16-375 (598)
17 PRK05563 DNA polymerase III su 100.0 4.1E-47 8.8E-52 352.2 37.1 304 2-308 8-359 (559)
18 PRK00440 rfc replication facto 100.0 1.8E-46 4E-51 330.6 38.5 310 1-311 8-318 (319)
19 PRK14971 DNA polymerase III su 100.0 7E-47 1.5E-51 352.8 36.4 306 2-310 9-363 (614)
20 PRK12323 DNA polymerase III su 100.0 5.8E-47 1.3E-51 344.9 34.5 307 2-311 8-365 (700)
21 PRK06645 DNA polymerase III su 100.0 1.2E-46 2.6E-51 342.1 35.9 307 2-311 13-373 (507)
22 PRK14960 DNA polymerase III su 100.0 9.7E-47 2.1E-51 344.3 35.3 309 1-312 6-361 (702)
23 PRK14963 DNA polymerase III su 100.0 1.4E-46 3.1E-51 343.3 36.5 303 2-308 6-340 (504)
24 PRK07764 DNA polymerase III su 100.0 7.4E-47 1.6E-51 360.5 35.9 304 2-308 7-364 (824)
25 PRK14951 DNA polymerase III su 100.0 1.3E-46 2.8E-51 347.7 35.9 307 2-311 8-366 (618)
26 PRK07133 DNA polymerase III su 100.0 1.5E-46 3.2E-51 349.4 35.6 308 2-312 10-358 (725)
27 PRK06647 DNA polymerase III su 100.0 2.3E-46 5E-51 345.6 35.8 306 2-310 8-359 (563)
28 PRK07994 DNA polymerase III su 100.0 2.5E-46 5.5E-51 346.3 35.8 307 2-311 8-361 (647)
29 PRK08691 DNA polymerase III su 100.0 8.1E-46 1.8E-50 341.2 35.0 307 2-311 8-360 (709)
30 PRK14959 DNA polymerase III su 100.0 1.1E-45 2.4E-50 339.1 34.4 306 1-309 7-362 (624)
31 PRK14953 DNA polymerase III su 100.0 2.6E-45 5.7E-50 334.0 36.2 306 2-311 8-356 (486)
32 PRK14962 DNA polymerase III su 100.0 1.9E-45 4E-50 333.4 34.9 305 2-309 6-333 (472)
33 COG2812 DnaX DNA polymerase II 100.0 2.6E-46 5.6E-51 335.7 28.9 306 2-310 8-361 (515)
34 PRK14957 DNA polymerase III su 100.0 3.6E-45 7.9E-50 334.2 36.1 307 2-311 8-360 (546)
35 TIGR02397 dnaX_nterm DNA polym 100.0 3.9E-45 8.5E-50 326.6 35.1 304 1-307 5-355 (355)
36 PRK14969 DNA polymerase III su 100.0 4.3E-45 9.2E-50 336.5 35.1 307 2-311 8-360 (527)
37 PRK14970 DNA polymerase III su 100.0 2E-44 4.4E-49 322.4 36.7 305 2-309 9-349 (367)
38 PRK14950 DNA polymerase III su 100.0 1.5E-44 3.3E-49 338.2 36.2 306 2-310 8-362 (585)
39 PRK12402 replication factor C 100.0 4.5E-44 9.7E-49 317.7 35.8 303 1-306 6-336 (337)
40 PRK05896 DNA polymerase III su 100.0 7E-44 1.5E-48 325.6 34.4 308 2-312 8-366 (605)
41 PRK14948 DNA polymerase III su 100.0 1.7E-43 3.7E-48 330.0 36.1 305 2-309 8-362 (620)
42 KOG2035|consensus 100.0 1E-41 2.2E-46 276.1 30.9 310 1-312 4-345 (351)
43 PRK04132 replication factor C 100.0 1.2E-38 2.6E-43 302.1 33.4 276 34-310 567-845 (846)
44 COG2256 MGS1 ATPase related to 100.0 4E-38 8.6E-43 268.5 29.1 293 2-307 16-335 (436)
45 KOG0990|consensus 100.0 4.9E-39 1.1E-43 265.9 21.0 309 1-309 32-350 (360)
46 PHA02544 44 clamp loader, smal 100.0 5.7E-37 1.2E-41 269.5 35.2 293 1-310 12-313 (316)
47 PRK05564 DNA polymerase III su 100.0 2.1E-36 4.6E-41 264.5 29.7 280 7-308 1-312 (313)
48 PRK04195 replication factor C 100.0 1.5E-34 3.3E-39 266.2 30.2 293 1-306 5-310 (482)
49 PRK13342 recombination factor 100.0 4.7E-34 1E-38 258.3 32.4 294 1-307 3-316 (413)
50 PRK13341 recombination factor 100.0 1.6E-33 3.5E-38 266.3 29.9 266 2-277 20-315 (725)
51 PRK07940 DNA polymerase III su 100.0 6.6E-33 1.4E-37 246.2 29.4 292 8-309 3-392 (394)
52 PRK07399 DNA polymerase III su 100.0 9.7E-33 2.1E-37 239.0 29.2 272 8-308 2-312 (314)
53 PRK08058 DNA polymerase III su 100.0 1.4E-32 3.1E-37 240.9 25.8 289 8-308 3-328 (329)
54 PRK07993 DNA polymerase III su 100.0 9.9E-32 2.1E-36 234.4 30.0 286 14-312 6-325 (334)
55 PRK05707 DNA polymerase III su 100.0 4.4E-31 9.6E-36 229.8 30.6 282 19-311 9-326 (328)
56 PRK09112 DNA polymerase III su 100.0 2.7E-30 5.9E-35 226.6 32.7 290 3-310 16-348 (351)
57 KOG2028|consensus 100.0 1.2E-31 2.6E-36 225.5 22.4 266 2-274 130-433 (554)
58 PRK07471 DNA polymerase III su 100.0 3E-30 6.4E-35 227.6 30.6 293 4-309 13-363 (365)
59 PRK08769 DNA polymerase III su 100.0 2.5E-30 5.3E-35 223.0 27.6 280 14-314 8-314 (319)
60 PRK06871 DNA polymerase III su 100.0 1.1E-29 2.3E-34 219.3 30.1 281 14-307 6-320 (325)
61 PRK06964 DNA polymerase III su 100.0 6.6E-29 1.4E-33 215.9 31.8 277 14-309 5-340 (342)
62 PF05496 RuvB_N: Holliday junc 100.0 1.1E-30 2.4E-35 209.4 16.6 186 2-201 16-225 (233)
63 PRK06090 DNA polymerase III su 100.0 1.9E-28 4E-33 211.1 28.9 279 14-308 7-315 (319)
64 PRK05917 DNA polymerase III su 100.0 4.1E-28 8.9E-33 204.9 28.3 255 17-311 4-278 (290)
65 PRK07132 DNA polymerase III su 100.0 1.3E-27 2.8E-32 204.6 29.2 277 16-309 2-297 (299)
66 COG0470 HolB ATPase involved i 100.0 2.7E-28 5.9E-33 215.5 24.6 286 10-312 1-320 (325)
67 PRK05907 hypothetical protein; 100.0 3.8E-25 8.2E-30 190.9 32.0 272 19-308 7-310 (311)
68 TIGR00678 holB DNA polymerase 100.0 3.3E-27 7.2E-32 191.8 18.2 166 20-194 2-188 (188)
69 PRK08699 DNA polymerase III su 100.0 1.3E-25 2.8E-30 195.3 28.8 277 14-312 5-323 (325)
70 PRK07276 DNA polymerase III su 100.0 8.5E-26 1.8E-30 191.6 26.2 260 14-303 6-289 (290)
71 PRK00080 ruvB Holliday junctio 100.0 5.2E-26 1.1E-30 200.3 25.7 202 2-217 17-247 (328)
72 PF13177 DNA_pol3_delta2: DNA 100.0 3.9E-27 8.5E-32 185.6 15.6 140 14-156 1-162 (162)
73 TIGR00635 ruvB Holliday juncti 99.9 1.2E-24 2.5E-29 190.5 24.1 199 7-219 1-228 (305)
74 COG2255 RuvB Holliday junction 99.9 4.8E-25 1E-29 180.4 19.8 198 3-214 19-245 (332)
75 PRK07914 hypothetical protein; 99.9 2.4E-23 5.1E-28 182.6 29.1 271 32-310 6-317 (320)
76 KOG1969|consensus 99.9 4.5E-24 9.8E-29 194.0 25.0 202 1-207 262-520 (877)
77 PTZ00112 origin recognition co 99.9 8.1E-24 1.8E-28 197.3 27.1 293 3-303 751-1095(1164)
78 TIGR02902 spore_lonB ATP-depen 99.9 7.1E-25 1.5E-29 203.2 19.7 220 1-221 56-333 (531)
79 PRK05629 hypothetical protein; 99.9 5.3E-23 1.1E-27 180.4 28.7 270 32-309 7-316 (318)
80 PRK07452 DNA polymerase III su 99.9 1.7E-22 3.7E-27 178.2 29.1 271 32-309 2-324 (326)
81 PRK06585 holA DNA polymerase I 99.9 7.1E-22 1.5E-26 175.5 30.6 283 22-312 9-340 (343)
82 PRK05818 DNA polymerase III su 99.9 6.3E-23 1.4E-27 169.6 21.7 161 30-201 5-194 (261)
83 PRK08487 DNA polymerase III su 99.9 8.2E-22 1.8E-26 173.4 30.0 280 20-311 4-327 (328)
84 PRK00411 cdc6 cell division co 99.9 4.5E-22 9.7E-27 180.3 27.4 277 10-287 30-351 (394)
85 TIGR02928 orc1/cdc6 family rep 99.9 4E-22 8.7E-27 178.9 25.0 282 2-287 10-343 (365)
86 PRK05574 holA DNA polymerase I 99.9 4.2E-21 9.1E-26 170.6 29.8 281 21-309 7-339 (340)
87 COG1474 CDC6 Cdc6-related prot 99.9 2.1E-21 4.5E-26 171.2 25.7 277 3-287 13-327 (366)
88 TIGR01128 holA DNA polymerase 99.9 7.4E-21 1.6E-25 166.3 27.0 253 48-307 4-302 (302)
89 PRK08084 DNA replication initi 99.9 1.3E-21 2.8E-26 164.0 20.3 197 8-217 20-233 (235)
90 COG1223 Predicted ATPase (AAA+ 99.9 4.4E-22 9.4E-27 160.9 15.5 199 7-218 118-353 (368)
91 PRK06893 DNA replication initi 99.9 2.7E-21 5.8E-26 161.5 20.2 200 5-217 11-227 (229)
92 TIGR02881 spore_V_K stage V sp 99.9 1.5E-21 3.2E-26 166.5 17.8 190 8-203 4-236 (261)
93 TIGR00602 rad24 checkpoint pro 99.9 1.2E-21 2.6E-26 182.5 18.0 203 1-203 75-329 (637)
94 PRK08727 hypothetical protein; 99.9 1.6E-20 3.4E-25 157.2 20.1 199 7-218 16-229 (233)
95 TIGR02903 spore_lon_C ATP-depe 99.9 2E-20 4.4E-25 176.1 20.3 219 2-221 146-431 (615)
96 PRK08903 DnaA regulatory inact 99.9 3.4E-20 7.5E-25 155.2 18.9 199 4-219 12-225 (227)
97 TIGR03420 DnaA_homol_Hda DnaA 99.9 5.1E-20 1.1E-24 154.2 18.2 199 5-216 10-224 (226)
98 PRK06581 DNA polymerase III su 99.8 3.5E-19 7.7E-24 144.0 19.2 176 19-200 2-190 (263)
99 CHL00181 cbbX CbbX; Provisiona 99.8 2.5E-19 5.4E-24 153.8 19.4 188 10-203 23-252 (287)
100 COG1222 RPT1 ATP-dependent 26S 99.8 5E-19 1.1E-23 149.7 18.1 197 7-217 148-389 (406)
101 PRK05642 DNA replication initi 99.8 2.6E-18 5.7E-23 143.8 19.1 197 8-217 17-232 (234)
102 TIGR02880 cbbX_cfxQ probable R 99.8 1.7E-18 3.7E-23 148.8 18.5 187 11-203 23-251 (284)
103 COG1466 HolA DNA polymerase II 99.8 1.2E-16 2.5E-21 141.0 28.8 280 22-308 6-331 (334)
104 TIGR02639 ClpA ATP-dependent C 99.8 1.4E-18 3E-23 167.8 17.9 211 2-217 174-426 (731)
105 PRK00149 dnaA chromosomal repl 99.8 2.1E-17 4.6E-22 151.6 23.8 204 8-218 120-347 (450)
106 PRK06620 hypothetical protein; 99.8 1.1E-17 2.3E-22 137.8 19.4 182 8-217 14-213 (214)
107 PRK14087 dnaA chromosomal repl 99.8 1.2E-16 2.6E-21 145.5 27.0 208 6-218 111-346 (450)
108 PRK14088 dnaA chromosomal repl 99.8 2E-16 4.3E-21 143.9 27.2 206 8-217 103-329 (440)
109 TIGR01241 FtsH_fam ATP-depende 99.8 1.3E-17 2.9E-22 154.6 19.7 200 6-218 51-293 (495)
110 KOG1970|consensus 99.8 3.2E-17 7E-22 145.6 20.2 239 1-247 73-372 (634)
111 PF03215 Rad17: Rad17 cell cyc 99.8 1.5E-17 3.3E-22 152.6 18.8 198 1-203 10-269 (519)
112 KOG0730|consensus 99.8 7.7E-18 1.7E-22 152.6 16.4 182 7-202 431-649 (693)
113 TIGR03345 VI_ClpV1 type VI sec 99.8 1.1E-17 2.3E-22 162.9 18.6 194 2-203 179-408 (852)
114 PRK09087 hypothetical protein; 99.8 2E-17 4.3E-22 137.4 16.7 187 8-218 19-220 (226)
115 PTZ00361 26 proteosome regulat 99.8 2.2E-17 4.7E-22 148.5 17.7 204 2-218 175-422 (438)
116 PRK12422 chromosomal replicati 99.8 2.9E-17 6.3E-22 149.0 18.5 201 8-217 109-340 (445)
117 CHL00195 ycf46 Ycf46; Provisio 99.8 4E-17 8.7E-22 148.9 19.1 204 7-222 225-465 (489)
118 PRK14086 dnaA chromosomal repl 99.8 5.2E-16 1.1E-20 143.2 26.0 205 8-217 286-512 (617)
119 PRK03992 proteasome-activating 99.8 1.1E-16 2.4E-21 143.7 19.9 197 8-217 129-369 (389)
120 PF00308 Bac_DnaA: Bacterial d 99.8 3.9E-17 8.4E-22 135.2 15.5 189 8-201 6-212 (219)
121 TIGR00362 DnaA chromosomal rep 99.8 1.2E-16 2.5E-21 145.0 20.0 203 8-217 108-334 (405)
122 PTZ00454 26S protease regulato 99.8 1.9E-16 4E-21 141.6 20.7 197 7-216 142-382 (398)
123 COG1224 TIP49 DNA helicase TIP 99.8 1.9E-16 4E-21 133.9 19.3 120 97-217 292-429 (450)
124 CHL00176 ftsH cell division pr 99.7 1.1E-16 2.4E-21 150.6 19.5 199 7-218 180-421 (638)
125 PF06068 TIP49: TIP49 C-termin 99.7 9.1E-17 2E-21 137.8 15.9 104 97-201 279-395 (398)
126 TIGR03689 pup_AAA proteasome A 99.7 1.1E-16 2.4E-21 145.8 17.6 171 2-176 174-385 (512)
127 TIGR00763 lon ATP-dependent pr 99.7 5.4E-17 1.2E-21 157.6 16.2 164 11-187 321-534 (775)
128 TIGR02640 gas_vesic_GvpN gas v 99.7 4.4E-16 9.4E-21 132.7 18.3 189 16-216 8-253 (262)
129 PRK14700 recombination factor 99.7 1.4E-15 3.1E-20 127.6 20.4 181 125-307 7-212 (300)
130 KOG0733|consensus 99.7 6.9E-16 1.5E-20 138.6 17.0 173 8-193 188-398 (802)
131 TIGR01242 26Sp45 26S proteasom 99.7 6.1E-16 1.3E-20 138.3 16.3 198 7-218 119-361 (364)
132 PRK08485 DNA polymerase III su 99.7 4E-16 8.7E-21 123.0 12.4 123 71-200 35-170 (206)
133 KOG0734|consensus 99.7 1E-15 2.2E-20 135.6 15.5 195 7-215 301-536 (752)
134 KOG2227|consensus 99.7 1.2E-14 2.7E-19 127.2 22.0 276 10-286 150-483 (529)
135 TIGR03346 chaperone_ClpB ATP-d 99.7 1.8E-15 3.8E-20 148.4 18.5 194 2-203 165-394 (852)
136 TIGR03345 VI_ClpV1 type VI sec 99.7 2.3E-15 4.9E-20 146.7 18.2 184 10-201 566-826 (852)
137 PRK13407 bchI magnesium chelat 99.7 4E-15 8.8E-20 129.6 17.3 212 5-217 3-303 (334)
138 TIGR01243 CDC48 AAA family ATP 99.7 1.8E-15 3.9E-20 146.7 16.8 169 7-189 450-655 (733)
139 COG0593 DnaA ATPase involved i 99.7 6.3E-15 1.4E-19 129.9 17.8 204 8-217 85-310 (408)
140 CHL00095 clpC Clp protease ATP 99.7 5.1E-15 1.1E-19 144.8 18.9 169 10-187 509-760 (821)
141 KOG0733|consensus 99.7 3.9E-15 8.5E-20 133.8 15.6 183 8-198 509-729 (802)
142 PRK10865 protein disaggregatio 99.6 2.4E-15 5.1E-20 147.0 15.3 194 2-203 170-399 (857)
143 PRK10787 DNA-binding ATP-depen 99.6 8.7E-15 1.9E-19 141.2 18.5 201 11-222 323-584 (784)
144 PRK11034 clpA ATP-dependent Cl 99.6 5.9E-15 1.3E-19 141.3 17.1 169 11-187 459-694 (758)
145 PLN00020 ribulose bisphosphate 99.6 2.8E-15 6E-20 129.1 13.1 151 30-190 146-331 (413)
146 KOG1942|consensus 99.6 2E-14 4.2E-19 118.8 17.1 119 97-216 297-434 (456)
147 PRK11034 clpA ATP-dependent Cl 99.6 7.4E-15 1.6E-19 140.6 16.4 202 6-216 182-429 (758)
148 KOG0731|consensus 99.6 1.6E-14 3.5E-19 134.9 17.8 200 7-218 308-551 (774)
149 COG0466 Lon ATP-dependent Lon 99.6 1.1E-14 2.4E-19 133.6 16.3 166 11-186 324-536 (782)
150 TIGR03015 pepcterm_ATPase puta 99.6 7.8E-14 1.7E-18 119.9 20.4 198 16-218 29-264 (269)
151 KOG0727|consensus 99.6 2.7E-14 6E-19 115.7 16.1 154 8-173 153-344 (408)
152 CHL00095 clpC Clp protease ATP 99.6 9.1E-15 2E-19 143.0 16.1 195 4-203 173-399 (821)
153 TIGR02639 ClpA ATP-dependent C 99.6 2.1E-14 4.6E-19 138.9 17.6 179 10-200 454-706 (731)
154 TIGR02030 BchI-ChlI magnesium 99.6 4.9E-14 1.1E-18 123.1 17.8 209 9-217 3-306 (337)
155 PRK10865 protein disaggregatio 99.6 6.8E-14 1.5E-18 136.9 20.4 187 9-200 567-823 (857)
156 KOG0742|consensus 99.6 9.8E-15 2.1E-19 125.7 12.7 157 5-170 349-530 (630)
157 KOG0743|consensus 99.6 5.7E-14 1.2E-18 123.1 17.3 150 5-168 196-383 (457)
158 KOG0738|consensus 99.6 7.8E-14 1.7E-18 119.4 17.6 169 8-189 210-415 (491)
159 CHL00081 chlI Mg-protoporyphyr 99.6 8.7E-14 1.9E-18 121.5 18.4 211 5-217 11-319 (350)
160 TIGR03346 chaperone_ClpB ATP-d 99.6 6.9E-14 1.5E-18 137.3 19.4 187 10-201 565-821 (852)
161 PF00004 AAA: ATPase family as 99.6 1.1E-14 2.5E-19 111.1 10.9 109 34-153 1-131 (132)
162 COG0542 clpA ATP-binding subun 99.6 4.4E-14 9.5E-19 133.0 16.5 188 10-200 491-749 (786)
163 PRK10733 hflB ATP-dependent me 99.6 3.7E-14 8E-19 134.9 16.2 198 7-217 149-389 (644)
164 PRK05342 clpX ATP-dependent pr 99.6 5.1E-14 1.1E-18 126.3 15.8 173 9-187 69-357 (412)
165 PF05673 DUF815: Protein of un 99.6 4E-13 8.6E-18 110.0 18.8 188 3-201 20-245 (249)
166 PRK13531 regulatory ATPase Rav 99.6 3.9E-13 8.4E-18 120.8 20.3 197 11-214 21-278 (498)
167 KOG0739|consensus 99.6 5.3E-14 1.1E-18 116.6 13.2 223 5-239 127-386 (439)
168 KOG1514|consensus 99.6 3.5E-13 7.6E-18 123.4 19.3 189 14-203 400-626 (767)
169 TIGR01817 nifA Nif-specific re 99.6 1.9E-13 4.2E-18 128.3 18.3 209 3-214 189-439 (534)
170 KOG2004|consensus 99.6 1.5E-13 3.3E-18 125.8 16.6 164 10-186 411-624 (906)
171 KOG0728|consensus 99.6 1.1E-13 2.4E-18 112.0 13.9 128 32-171 182-334 (404)
172 KOG1968|consensus 99.6 3.1E-14 6.6E-19 136.7 12.4 196 1-203 311-537 (871)
173 COG0464 SpoVK ATPases of the A 99.5 1.6E-13 3.4E-18 127.8 16.1 200 7-218 239-481 (494)
174 CHL00206 ycf2 Ycf2; Provisiona 99.5 2E-13 4.4E-18 137.0 16.9 125 95-219 1731-1876(2281)
175 cd00009 AAA The AAA+ (ATPases 99.5 2.7E-13 5.8E-18 105.2 14.3 139 13-153 1-150 (151)
176 KOG0652|consensus 99.5 2.6E-13 5.6E-18 110.6 14.4 170 5-187 165-373 (424)
177 TIGR00382 clpX endopeptidase C 99.5 2.2E-13 4.7E-18 121.6 15.1 184 11-200 78-379 (413)
178 KOG0737|consensus 99.5 8.7E-14 1.9E-18 118.8 11.6 184 8-200 90-306 (386)
179 TIGR01243 CDC48 AAA family ATP 99.5 3.7E-13 8E-18 130.7 17.4 171 7-191 175-381 (733)
180 KOG0736|consensus 99.5 2.4E-13 5.2E-18 125.4 14.6 166 8-187 670-875 (953)
181 TIGR02442 Cob-chelat-sub cobal 99.5 8.6E-13 1.9E-17 125.5 18.8 208 9-216 3-300 (633)
182 KOG0726|consensus 99.5 1.3E-13 2.8E-18 113.9 10.9 153 2-166 177-367 (440)
183 TIGR01650 PD_CobS cobaltochela 99.5 2.3E-12 5E-17 110.9 18.8 176 4-186 39-251 (327)
184 KOG0740|consensus 99.5 3.8E-13 8.2E-18 118.7 13.7 175 3-189 146-354 (428)
185 PRK10820 DNA-binding transcrip 99.5 2E-12 4.3E-17 120.5 18.5 205 6-213 200-447 (520)
186 TIGR02974 phageshock_pspF psp 99.5 1.9E-12 4.1E-17 113.6 17.1 198 12-212 1-242 (329)
187 COG0465 HflB ATP-dependent Zn 99.5 6.1E-13 1.3E-17 122.3 14.1 195 8-216 148-386 (596)
188 KOG2680|consensus 99.5 5.6E-12 1.2E-16 104.7 18.3 119 97-216 289-425 (454)
189 PRK11331 5-methylcytosine-spec 99.5 6.1E-12 1.3E-16 112.3 17.6 151 9-166 174-370 (459)
190 PF01637 Arch_ATPase: Archaeal 99.4 1.9E-12 4.2E-17 108.6 13.6 175 12-195 1-232 (234)
191 TIGR02329 propionate_PrpR prop 99.4 7.1E-12 1.5E-16 116.0 18.3 206 7-215 209-465 (526)
192 PRK11608 pspF phage shock prot 99.4 1E-11 2.3E-16 109.1 18.5 193 8-203 4-238 (326)
193 TIGR00764 lon_rel lon-related 99.4 7.3E-12 1.6E-16 118.1 18.6 124 96-219 217-390 (608)
194 PF01078 Mg_chelatase: Magnesi 99.4 2.2E-13 4.7E-18 109.3 7.0 125 8-135 1-158 (206)
195 KOG0729|consensus 99.4 1.5E-12 3.3E-17 106.4 11.6 167 8-188 175-380 (435)
196 COG2204 AtoC Response regulato 99.4 3.9E-11 8.4E-16 107.7 21.4 204 8-214 139-385 (464)
197 PRK11388 DNA-binding transcrip 99.4 8.7E-12 1.9E-16 119.7 17.7 205 8-215 323-566 (638)
198 COG0714 MoxR-like ATPases [Gen 99.4 6.7E-12 1.5E-16 110.8 15.7 149 11-166 25-200 (329)
199 TIGR00390 hslU ATP-dependent p 99.4 4.4E-12 9.5E-17 111.9 13.9 108 96-203 247-402 (441)
200 PRK15424 propionate catabolism 99.4 1.5E-11 3.1E-16 113.9 17.9 205 8-213 217-478 (538)
201 KOG0735|consensus 99.4 8.4E-12 1.8E-16 114.5 15.8 169 8-189 665-868 (952)
202 TIGR00368 Mg chelatase-related 99.4 1.8E-11 3.8E-16 112.6 17.5 150 8-160 190-396 (499)
203 PHA02244 ATPase-like protein 99.4 3E-12 6.6E-17 111.3 11.4 129 20-157 110-263 (383)
204 PRK13765 ATP-dependent proteas 99.4 4.3E-11 9.3E-16 112.7 18.8 211 5-217 26-397 (637)
205 PRK05201 hslU ATP-dependent pr 99.4 1.1E-11 2.5E-16 109.4 13.8 108 96-203 249-404 (443)
206 PRK05022 anaerobic nitric oxid 99.4 4.3E-11 9.4E-16 111.6 18.4 193 8-203 185-418 (509)
207 smart00350 MCM minichromosome 99.4 3E-11 6.4E-16 112.4 17.0 152 11-166 204-398 (509)
208 COG2607 Predicted ATPase (AAA+ 99.4 9.3E-11 2E-15 94.7 17.3 189 3-203 53-279 (287)
209 COG1221 PspF Transcriptional r 99.4 1.4E-11 3E-16 108.6 13.6 195 8-203 76-307 (403)
210 COG3829 RocR Transcriptional r 99.3 7.9E-11 1.7E-15 105.9 16.6 205 7-214 242-491 (560)
211 KOG0730|consensus 99.3 8.5E-11 1.8E-15 107.4 16.7 147 33-191 220-386 (693)
212 PF05621 TniB: Bacterial TniB 99.3 4E-10 8.6E-15 95.5 19.5 202 13-216 37-285 (302)
213 PF07728 AAA_5: AAA domain (dy 99.3 3.3E-12 7.2E-17 98.5 6.5 110 33-147 1-139 (139)
214 PF07724 AAA_2: AAA domain (Cd 99.3 7.1E-12 1.5E-16 99.4 8.3 101 32-137 4-131 (171)
215 PRK15429 formate hydrogenlyase 99.3 1.3E-10 2.8E-15 112.3 18.4 194 7-203 373-607 (686)
216 KOG0732|consensus 99.3 7.9E-11 1.7E-15 113.6 15.8 189 8-199 263-482 (1080)
217 KOG0744|consensus 99.3 2.5E-11 5.4E-16 102.0 10.8 129 34-167 180-339 (423)
218 PF06144 DNA_pol3_delta: DNA p 99.3 1.2E-11 2.5E-16 99.0 8.3 162 34-202 1-171 (172)
219 COG0542 clpA ATP-binding subun 99.3 8.1E-11 1.8E-15 111.3 14.7 190 5-203 165-391 (786)
220 TIGR02915 PEP_resp_reg putativ 99.2 5E-10 1.1E-14 103.3 17.7 203 8-213 137-382 (445)
221 KOG0651|consensus 99.2 1.1E-10 2.4E-15 97.6 11.3 169 8-189 130-339 (388)
222 TIGR02031 BchD-ChlD magnesium 99.2 5.1E-10 1.1E-14 105.6 16.9 188 27-217 12-255 (589)
223 PRK10923 glnG nitrogen regulat 99.2 6.7E-10 1.5E-14 103.1 17.5 204 8-214 136-382 (469)
224 PF00158 Sigma54_activat: Sigm 99.2 5.5E-11 1.2E-15 94.1 8.6 135 12-150 1-165 (168)
225 smart00763 AAA_PrkA PrkA AAA d 99.2 1E-09 2.2E-14 95.7 16.2 91 95-185 235-347 (361)
226 PF07726 AAA_3: ATPase family 99.2 3E-11 6.4E-16 89.1 5.3 110 33-148 1-130 (131)
227 PRK09862 putative ATP-dependen 99.2 1.5E-09 3.3E-14 99.5 17.4 147 7-156 188-389 (506)
228 COG3604 FhlA Transcriptional r 99.2 1.2E-09 2.6E-14 97.2 15.9 194 8-203 221-454 (550)
229 KOG0735|consensus 99.2 1.8E-09 4E-14 99.5 16.2 188 32-223 432-651 (952)
230 PRK12377 putative replication 99.1 3.3E-10 7.1E-15 95.0 10.6 140 4-147 68-222 (248)
231 PRK08181 transposase; Validate 99.1 1.9E-10 4.1E-15 97.6 9.2 105 22-136 99-209 (269)
232 TIGR01818 ntrC nitrogen regula 99.1 3.1E-09 6.6E-14 98.6 18.1 202 10-214 134-378 (463)
233 PRK15115 response regulator Gl 99.1 4E-09 8.7E-14 97.3 18.3 181 32-215 158-379 (444)
234 PRK11361 acetoacetate metaboli 99.1 2.9E-09 6.2E-14 98.6 17.2 203 9-214 142-387 (457)
235 KOG2170|consensus 99.1 2.1E-09 4.5E-14 89.8 13.8 124 12-137 84-226 (344)
236 COG0606 Predicted ATPase with 99.1 8.5E-11 1.8E-15 104.3 5.9 112 8-122 177-309 (490)
237 COG3283 TyrR Transcriptional r 99.1 2E-08 4.3E-13 85.9 19.8 204 9-214 203-443 (511)
238 PTZ00111 DNA replication licen 99.1 1E-09 2.3E-14 105.4 12.6 145 11-158 451-647 (915)
239 PRK07952 DNA replication prote 99.1 1.1E-09 2.4E-14 91.6 11.0 146 2-156 64-235 (244)
240 COG1219 ClpX ATP-dependent pro 99.1 1.7E-09 3.8E-14 90.9 11.9 105 11-121 62-201 (408)
241 COG1239 ChlI Mg-chelatase subu 99.1 6E-09 1.3E-13 91.4 15.7 162 9-170 16-234 (423)
242 PRK08116 hypothetical protein; 99.1 7.6E-10 1.7E-14 94.4 9.3 145 4-157 79-251 (268)
243 PF08542 Rep_fac_C: Replicatio 99.1 5.7E-09 1.2E-13 73.7 12.3 87 220-306 3-89 (89)
244 PF14532 Sigma54_activ_2: Sigm 99.1 1.7E-09 3.8E-14 83.1 10.2 122 14-154 2-137 (138)
245 PF00931 NB-ARC: NB-ARC domain 99.0 8E-09 1.7E-13 89.6 15.0 175 16-194 2-199 (287)
246 KOG0741|consensus 99.0 6.8E-10 1.5E-14 99.1 7.9 133 34-166 259-412 (744)
247 KOG0745|consensus 99.0 1.1E-08 2.4E-13 89.5 15.0 121 32-157 227-388 (564)
248 PRK06526 transposase; Provisio 99.0 5.5E-10 1.2E-14 94.3 6.4 102 25-136 94-201 (254)
249 KOG1051|consensus 99.0 3.1E-09 6.7E-14 102.1 12.0 121 10-137 562-712 (898)
250 smart00382 AAA ATPases associa 99.0 9.8E-09 2.1E-13 78.7 12.8 95 32-135 3-125 (148)
251 PRK10365 transcriptional regul 99.0 3.2E-08 6.9E-13 91.3 17.8 179 33-214 164-383 (441)
252 COG3267 ExeA Type II secretory 99.0 7.4E-08 1.6E-12 79.1 16.4 195 15-213 36-266 (269)
253 PF13173 AAA_14: AAA domain 99.0 8.1E-09 1.8E-13 78.2 10.3 119 33-160 4-127 (128)
254 COG1241 MCM2 Predicted ATPase 99.0 3.2E-09 7E-14 99.6 9.6 137 10-150 286-463 (682)
255 KOG0478|consensus 99.0 1.5E-08 3.3E-13 93.1 13.6 144 11-158 430-616 (804)
256 KOG0482|consensus 99.0 3.7E-08 8E-13 87.7 15.5 265 11-281 343-702 (721)
257 PRK13406 bchD magnesium chelat 98.9 6.4E-08 1.4E-12 90.8 17.4 200 15-217 8-247 (584)
258 PHA00729 NTP-binding motif con 98.9 1.5E-08 3.2E-13 83.0 10.4 128 21-167 7-139 (226)
259 PF01695 IstB_IS21: IstB-like 98.9 1.5E-09 3.2E-14 86.9 3.9 93 33-136 49-150 (178)
260 PRK06921 hypothetical protein; 98.8 2.6E-08 5.6E-13 84.9 10.4 101 31-136 117-225 (266)
261 PRK09183 transposase/IS protei 98.8 8.1E-09 1.8E-13 87.7 7.1 110 17-136 88-206 (259)
262 PF12775 AAA_7: P-loop contain 98.8 2.4E-08 5.2E-13 85.3 9.9 145 22-170 26-195 (272)
263 KOG0480|consensus 98.8 2.2E-08 4.8E-13 91.3 9.7 157 9-169 344-543 (764)
264 PF12774 AAA_6: Hydrolytic ATP 98.8 3.3E-07 7.1E-12 76.2 16.0 132 20-166 23-178 (231)
265 PF05729 NACHT: NACHT domain 98.8 4.1E-08 8.9E-13 77.7 10.2 136 34-169 3-164 (166)
266 COG1220 HslU ATP-dependent pro 98.8 5E-08 1.1E-12 82.9 10.9 107 96-202 250-404 (444)
267 PRK06835 DNA replication prote 98.8 3.4E-08 7.3E-13 86.4 10.2 134 18-155 168-317 (329)
268 PF13401 AAA_22: AAA domain; P 98.8 2.1E-08 4.5E-13 76.3 7.7 101 33-135 6-125 (131)
269 KOG0477|consensus 98.8 1.4E-08 3E-13 92.4 7.4 136 11-150 450-626 (854)
270 KOG0736|consensus 98.8 9.7E-08 2.1E-12 89.2 12.8 145 32-188 432-595 (953)
271 PRK04841 transcriptional regul 98.7 5.5E-06 1.2E-10 83.4 25.3 182 5-196 9-224 (903)
272 PF12169 DNA_pol3_gamma3: DNA 98.7 2.6E-07 5.6E-12 71.4 11.4 104 208-311 1-132 (143)
273 PRK08939 primosomal protein Dn 98.7 4.3E-08 9.3E-13 85.1 7.5 128 5-136 122-261 (306)
274 COG1484 DnaC DNA replication p 98.7 4.5E-08 9.8E-13 82.8 7.4 102 32-137 106-210 (254)
275 COG1125 OpuBA ABC-type proline 98.7 1.8E-07 4E-12 76.7 10.1 198 13-260 11-226 (309)
276 COG1126 GlnQ ABC-type polar am 98.7 3E-08 6.6E-13 79.3 5.4 135 9-147 8-206 (240)
277 PF14516 AAA_35: AAA-like doma 98.7 2.8E-05 6.1E-10 68.7 24.7 230 12-251 13-292 (331)
278 PLN03210 Resistant to P. syrin 98.7 1.7E-06 3.8E-11 88.6 19.5 188 6-198 180-395 (1153)
279 COG1618 Predicted nucleotide k 98.7 7.4E-07 1.6E-11 68.0 12.5 126 34-168 8-172 (179)
280 PRK04132 replication factor C 98.6 1.2E-08 2.7E-13 98.5 2.7 47 1-47 10-56 (846)
281 PHA02774 E1; Provisional 98.6 3.9E-07 8.5E-12 83.8 11.7 136 18-173 420-586 (613)
282 COG3284 AcoR Transcriptional a 98.6 6.3E-06 1.4E-10 76.1 18.2 173 33-210 338-547 (606)
283 PF00493 MCM: MCM2/3/5 family 98.6 4.7E-09 1E-13 92.4 -1.9 136 11-150 25-201 (331)
284 PF03266 NTPase_1: NTPase; In 98.6 2.9E-08 6.3E-13 78.5 2.7 64 96-162 95-165 (168)
285 COG4619 ABC-type uncharacteriz 98.6 2.5E-06 5.3E-11 65.8 12.8 155 25-233 25-180 (223)
286 PF13191 AAA_16: AAA ATPase do 98.5 2E-07 4.4E-12 75.2 6.3 48 11-58 1-51 (185)
287 TIGR02688 conserved hypothetic 98.5 2.8E-05 6E-10 69.4 19.3 115 4-137 185-314 (449)
288 COG2884 FtsE Predicted ATPase 98.5 2E-07 4.3E-12 73.2 5.2 57 96-152 155-212 (223)
289 KOG0481|consensus 98.5 4.4E-06 9.6E-11 74.9 14.1 138 11-152 332-510 (729)
290 COG5271 MDN1 AAA ATPase contai 98.4 2.6E-06 5.7E-11 85.6 11.9 142 33-187 890-1061(4600)
291 PF13604 AAA_30: AAA domain; P 98.4 2.4E-06 5.2E-11 69.6 9.9 114 17-136 5-131 (196)
292 PF00910 RNA_helicase: RNA hel 98.4 2.1E-06 4.5E-11 62.7 8.3 71 34-121 1-78 (107)
293 KOG2543|consensus 98.4 8.5E-06 1.8E-10 70.8 12.2 184 11-203 7-232 (438)
294 COG4650 RtcR Sigma54-dependent 98.3 9.7E-06 2.1E-10 68.1 11.9 183 33-215 210-438 (531)
295 PHA02624 large T antigen; Prov 98.3 4.3E-06 9.4E-11 77.4 10.5 102 34-154 434-561 (647)
296 PF12780 AAA_8: P-loop contain 98.3 4.4E-05 9.6E-10 65.0 15.5 152 11-170 9-212 (268)
297 KOG0741|consensus 98.3 7.3E-05 1.6E-09 67.7 16.9 158 33-203 540-721 (744)
298 KOG2228|consensus 98.3 1.4E-05 3.1E-10 68.3 11.7 154 15-168 33-219 (408)
299 PRK10536 hypothetical protein; 98.3 1.1E-05 2.3E-10 67.5 10.6 43 11-55 56-98 (262)
300 PF07693 KAP_NTPase: KAP famil 98.2 0.00027 5.8E-09 62.4 19.9 76 95-170 171-265 (325)
301 cd03246 ABCC_Protease_Secretio 98.2 4.1E-06 9E-11 66.9 7.5 109 26-137 25-157 (173)
302 PF10443 RNA12: RNA12 protein; 98.2 0.00014 3.1E-09 64.8 17.5 153 96-251 148-336 (431)
303 cd03228 ABCC_MRP_Like The MRP 98.2 3.1E-06 6.7E-11 67.5 6.6 109 25-138 24-157 (171)
304 COG2274 SunT ABC-type bacterio 98.2 1.5E-06 3.3E-11 83.4 5.4 42 95-136 626-668 (709)
305 PRK04296 thymidine kinase; Pro 98.2 1.1E-05 2.4E-10 65.4 9.7 94 33-135 4-115 (190)
306 cd03247 ABCC_cytochrome_bd The 98.2 2.2E-06 4.7E-11 68.9 5.5 109 25-138 24-159 (178)
307 cd01120 RecA-like_NTPases RecA 98.2 1.4E-05 3E-10 62.8 9.9 24 33-56 1-24 (165)
308 cd03214 ABC_Iron-Siderophores_ 98.2 1.1E-05 2.3E-10 65.0 9.1 109 26-137 22-159 (180)
309 COG1127 Ttg2A ABC-type transpo 98.2 8.9E-07 1.9E-11 72.2 2.8 185 14-247 19-216 (263)
310 COG5271 MDN1 AAA ATPase contai 98.2 4.5E-05 9.8E-10 77.3 14.4 140 33-184 1545-1715(4600)
311 TIGR02868 CydC thiol reductant 98.2 4.2E-06 9.2E-11 79.0 7.2 37 18-56 350-386 (529)
312 cd03216 ABC_Carb_Monos_I This 98.2 1.2E-05 2.6E-10 63.5 8.6 102 26-137 23-143 (163)
313 PF06309 Torsin: Torsin; Inte 98.2 6.3E-06 1.4E-10 60.9 6.2 55 11-65 26-87 (127)
314 TIGR02858 spore_III_AA stage I 98.1 1.3E-05 2.7E-10 68.4 8.6 35 22-56 102-136 (270)
315 COG2909 MalT ATP-dependent tra 98.1 0.00074 1.6E-08 64.8 20.6 176 9-192 18-228 (894)
316 PRK11174 cysteine/glutathione 98.1 7.2E-06 1.6E-10 78.5 7.7 41 96-136 503-544 (588)
317 COG1119 ModF ABC-type molybden 98.1 2.2E-05 4.7E-10 64.5 9.2 53 96-148 189-245 (257)
318 cd03222 ABC_RNaseL_inhibitor T 98.1 2.2E-05 4.7E-10 62.8 9.0 103 26-136 22-132 (177)
319 COG1117 PstB ABC-type phosphat 98.1 2E-05 4.4E-10 63.3 8.6 185 8-243 12-214 (253)
320 COG1124 DppF ABC-type dipeptid 98.1 4.5E-06 9.8E-11 68.3 4.9 166 18-233 22-188 (252)
321 cd00561 CobA_CobO_BtuR ATP:cor 98.1 2.5E-05 5.5E-10 60.8 8.8 103 34-136 5-138 (159)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 3.6E-05 7.8E-10 59.5 9.7 99 26-137 23-128 (144)
323 KOG0058|consensus 98.1 6E-06 1.3E-10 77.3 5.9 40 18-60 483-522 (716)
324 cd00267 ABC_ATPase ABC (ATP-bi 98.1 3.5E-05 7.6E-10 60.5 9.5 96 33-137 27-141 (157)
325 PF04665 Pox_A32: Poxvirus A32 98.1 0.00056 1.2E-08 57.0 16.8 133 33-167 15-169 (241)
326 cd03229 ABC_Class3 This class 98.1 8.5E-06 1.8E-10 65.4 5.8 43 95-137 117-162 (178)
327 PRK11176 lipid transporter ATP 98.0 1.2E-05 2.7E-10 76.8 7.8 41 96-136 498-539 (582)
328 PRK15455 PrkA family serine pr 98.0 7.9E-06 1.7E-10 75.4 5.9 52 5-56 71-128 (644)
329 PRK13695 putative NTPase; Prov 98.0 5E-05 1.1E-09 60.7 10.0 71 95-168 95-172 (174)
330 COG1120 FepC ABC-type cobalami 98.0 6.3E-07 1.4E-11 75.0 -1.1 171 15-233 14-185 (258)
331 KOG3347|consensus 98.0 1E-05 2.2E-10 61.0 5.2 26 30-55 6-31 (176)
332 COG4608 AppF ABC-type oligopep 98.0 2.7E-05 5.9E-10 65.1 8.1 77 157-235 82-158 (268)
333 PRK12723 flagellar biosynthesi 98.0 7.6E-05 1.7E-09 66.9 11.5 102 33-135 176-297 (388)
334 KOG0479|consensus 98.0 5.9E-05 1.3E-09 68.9 10.7 130 11-149 302-477 (818)
335 COG1116 TauB ABC-type nitrate/ 98.0 1.1E-05 2.4E-10 66.5 5.7 97 155-254 102-208 (248)
336 cd03230 ABC_DR_subfamily_A Thi 98.0 9.5E-06 2E-10 64.8 5.2 43 95-137 112-156 (173)
337 PRK13657 cyclic beta-1,2-gluca 98.0 1.4E-05 2.9E-10 76.6 7.2 41 96-136 489-530 (588)
338 COG4172 ABC-type uncharacteriz 98.0 9.3E-06 2E-10 71.1 5.4 166 26-235 310-475 (534)
339 PF03969 AFG1_ATPase: AFG1-lik 98.0 2.9E-05 6.3E-10 69.0 8.7 115 32-155 63-201 (362)
340 PTZ00202 tuzin; Provisional 98.0 0.00041 8.9E-09 62.3 15.5 51 5-55 257-310 (550)
341 cd03223 ABCD_peroxisomal_ALDP 98.0 6.8E-05 1.5E-09 59.4 9.7 107 25-137 23-149 (166)
342 TIGR01618 phage_P_loop phage n 98.0 2.1E-05 4.6E-10 64.7 6.9 71 33-110 14-95 (220)
343 cd03213 ABCG_EPDR ABCG transpo 98.0 1.3E-05 2.9E-10 65.2 5.7 117 18-137 24-172 (194)
344 TIGR02203 MsbA_lipidA lipid A 98.0 2E-05 4.4E-10 75.2 7.5 41 96-136 487-528 (571)
345 TIGR02857 CydD thiol reductant 98.0 2.3E-05 5E-10 74.0 7.7 41 96-136 476-517 (529)
346 TIGR03375 type_I_sec_LssB type 98.0 1.5E-05 3.2E-10 77.8 6.5 42 96-137 619-661 (694)
347 PRK10790 putative multidrug tr 97.9 2.2E-05 4.7E-10 75.3 7.4 41 96-136 494-535 (592)
348 cd03263 ABC_subfamily_A The AB 97.9 2E-05 4.4E-10 65.5 6.3 42 96-137 151-193 (220)
349 PRK13539 cytochrome c biogenes 97.9 6E-05 1.3E-09 62.1 8.8 46 96-141 145-192 (207)
350 TIGR02204 MsbA_rel ABC transpo 97.9 3E-05 6.4E-10 74.1 7.9 42 96-137 494-536 (576)
351 PF00448 SRP54: SRP54-type pro 97.9 5.3E-05 1.1E-09 61.6 8.1 101 34-135 4-125 (196)
352 COG1373 Predicted ATPase (AAA+ 97.9 0.00026 5.7E-09 64.1 13.3 130 21-163 28-162 (398)
353 PF04851 ResIII: Type III rest 97.9 8.1E-05 1.8E-09 59.7 9.1 44 14-57 7-51 (184)
354 cd03215 ABC_Carb_Monos_II This 97.9 1.7E-05 3.8E-10 63.8 5.0 42 95-136 121-164 (182)
355 TIGR01846 type_I_sec_HlyB type 97.9 2.9E-05 6.3E-10 75.8 7.3 42 96-137 611-653 (694)
356 cd03232 ABC_PDR_domain2 The pl 97.9 2.6E-05 5.7E-10 63.4 5.9 43 95-137 125-169 (192)
357 cd03217 ABC_FeS_Assembly ABC-t 97.9 3E-05 6.4E-10 63.5 6.2 43 95-137 121-165 (200)
358 TIGR01192 chvA glucan exporter 97.9 3.3E-05 7.2E-10 73.8 7.4 42 96-137 489-531 (585)
359 cd03369 ABCC_NFT1 Domain 2 of 97.9 3.6E-05 7.8E-10 63.4 6.7 44 96-139 143-187 (207)
360 COG1131 CcmA ABC-type multidru 97.9 7.3E-06 1.6E-10 71.1 2.7 40 16-57 18-57 (293)
361 PRK10875 recD exonuclease V su 97.9 0.00019 4.2E-09 68.2 12.3 100 33-135 169-301 (615)
362 PRK11889 flhF flagellar biosyn 97.9 0.00023 5E-09 63.2 11.8 27 33-59 243-269 (436)
363 COG4988 CydD ABC-type transpor 97.9 5E-05 1.1E-09 69.8 7.9 42 96-137 474-516 (559)
364 PRK11160 cysteine/glutathione 97.9 3.9E-05 8.3E-10 73.2 7.6 42 96-137 493-535 (574)
365 COG4178 ABC-type uncharacteriz 97.9 6.8E-05 1.5E-09 69.9 8.9 42 95-136 532-574 (604)
366 PRK10789 putative multidrug tr 97.9 3.3E-05 7.1E-10 73.6 7.0 42 96-137 469-511 (569)
367 COG4088 Predicted nucleotide k 97.9 0.00018 3.9E-09 57.5 9.9 29 32-60 2-30 (261)
368 COG1122 CbiO ABC-type cobalt t 97.9 2.3E-05 5.1E-10 65.3 5.1 42 96-137 156-200 (235)
369 cd03264 ABC_drug_resistance_li 97.9 5.4E-05 1.2E-09 62.5 7.3 42 96-137 148-190 (211)
370 PRK05703 flhF flagellar biosyn 97.8 0.00044 9.6E-09 63.0 13.6 103 33-136 223-343 (424)
371 COG3842 PotA ABC-type spermidi 97.8 2.1E-05 4.6E-10 68.9 4.8 195 13-260 15-227 (352)
372 TIGR03796 NHPM_micro_ABC1 NHPM 97.8 3.2E-05 6.9E-10 75.7 6.6 37 18-56 494-530 (710)
373 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 4.4E-05 9.5E-10 74.5 7.5 37 18-56 468-504 (686)
374 TIGR02237 recomb_radB DNA repa 97.8 0.00011 2.5E-09 60.5 8.9 25 34-58 15-39 (209)
375 TIGR03410 urea_trans_UrtE urea 97.8 4.6E-05 9.9E-10 63.9 6.6 42 96-137 149-193 (230)
376 TIGR01448 recD_rel helicase, p 97.8 0.00017 3.6E-09 70.2 11.3 99 33-135 340-452 (720)
377 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00011 2.4E-09 71.7 10.1 111 16-134 355-475 (744)
378 KOG0055|consensus 97.8 4.1E-05 8.9E-10 76.2 7.0 35 19-55 1006-1040(1228)
379 PRK13540 cytochrome c biogenes 97.8 8.8E-05 1.9E-09 60.7 8.0 42 96-137 145-188 (200)
380 PRK13900 type IV secretion sys 97.8 0.0014 3.1E-08 57.8 15.9 40 15-56 146-185 (332)
381 PF09848 DUF2075: Uncharacteri 97.8 8.2E-05 1.8E-09 66.5 8.3 87 33-122 3-117 (352)
382 PF00519 PPV_E1_C: Papillomavi 97.8 7E-05 1.5E-09 65.7 7.5 115 20-155 250-383 (432)
383 PRK14974 cell division protein 97.8 0.00027 5.9E-09 62.2 11.3 26 33-58 142-167 (336)
384 cd00046 DEXDc DEAD-like helica 97.8 0.00013 2.7E-09 55.4 8.3 25 33-57 2-26 (144)
385 TIGR01193 bacteriocin_ABC ABC- 97.8 3.2E-05 7E-10 75.6 6.2 37 18-56 489-525 (708)
386 PLN03232 ABC transporter C fam 97.8 2.2E-05 4.8E-10 82.4 5.2 38 17-56 1250-1287(1495)
387 PLN03130 ABC transporter C fam 97.8 2.5E-05 5.4E-10 82.4 5.5 37 18-56 1254-1290(1622)
388 PRK10247 putative ABC transpor 97.8 6.9E-05 1.5E-09 62.6 7.2 43 96-138 155-200 (225)
389 cd03268 ABC_BcrA_bacitracin_re 97.8 7.6E-05 1.7E-09 61.5 7.4 42 96-137 144-187 (208)
390 PRK06067 flagellar accessory p 97.8 0.00046 1E-08 58.0 12.1 34 22-55 14-49 (234)
391 TIGR01447 recD exodeoxyribonuc 97.8 0.00029 6.3E-09 66.8 11.8 37 96-135 259-295 (586)
392 COG3839 MalK ABC-type sugar tr 97.8 0.00015 3.2E-09 63.4 9.1 106 152-260 102-224 (338)
393 cd03251 ABCC_MsbA MsbA is an e 97.8 7E-05 1.5E-09 62.9 7.0 44 96-139 156-200 (234)
394 PF10236 DAP3: Mitochondrial r 97.8 0.001 2.2E-08 58.2 14.3 47 149-195 258-307 (309)
395 PRK13648 cbiO cobalt transport 97.8 5.5E-05 1.2E-09 65.0 6.3 44 96-139 160-206 (269)
396 cd03225 ABC_cobalt_CbiO_domain 97.8 6.9E-05 1.5E-09 61.9 6.7 42 96-137 152-195 (211)
397 TIGR01188 drrA daunorubicin re 97.8 6.2E-05 1.3E-09 65.8 6.7 42 96-137 142-185 (302)
398 TIGR00958 3a01208 Conjugate Tr 97.8 5.7E-05 1.2E-09 73.8 7.2 37 18-56 496-532 (711)
399 PF05272 VirE: Virulence-assoc 97.8 0.00013 2.8E-09 59.3 8.0 99 34-154 55-169 (198)
400 COG1123 ATPase components of v 97.8 0.00034 7.3E-09 64.6 11.5 170 19-234 307-477 (539)
401 cd03244 ABCC_MRP_domain2 Domai 97.8 7E-05 1.5E-09 62.3 6.6 43 96-138 157-200 (221)
402 PRK13635 cbiO cobalt transport 97.8 6.1E-05 1.3E-09 65.0 6.4 44 96-139 158-204 (279)
403 PF05707 Zot: Zonular occluden 97.8 3.3E-05 7.1E-10 62.9 4.5 60 96-155 79-146 (193)
404 cd03252 ABCC_Hemolysin The ABC 97.8 6.6E-05 1.4E-09 63.2 6.4 44 96-139 156-200 (237)
405 TIGR00960 3a0501s02 Type II (G 97.8 6.1E-05 1.3E-09 62.4 6.1 42 96-137 156-199 (216)
406 TIGR03522 GldA_ABC_ATP gliding 97.8 6.7E-05 1.5E-09 65.5 6.6 42 96-137 151-193 (301)
407 PRK13537 nodulation ABC transp 97.7 5.1E-05 1.1E-09 66.4 5.7 42 96-137 156-199 (306)
408 PF02562 PhoH: PhoH-like prote 97.7 0.00024 5.2E-09 57.8 9.1 37 96-135 119-155 (205)
409 PRK14722 flhF flagellar biosyn 97.7 0.00036 7.8E-09 62.1 11.0 23 33-55 139-161 (374)
410 PRK13650 cbiO cobalt transport 97.7 7.5E-05 1.6E-09 64.5 6.6 52 96-149 158-212 (279)
411 cd03261 ABC_Org_Solvent_Resist 97.7 6.9E-05 1.5E-09 63.0 6.3 42 96-137 154-198 (235)
412 cd03266 ABC_NatA_sodium_export 97.7 6.8E-05 1.5E-09 62.3 6.1 42 96-137 154-197 (218)
413 TIGR02673 FtsE cell division A 97.7 5.5E-05 1.2E-09 62.6 5.5 42 96-137 155-198 (214)
414 PRK12727 flagellar biosynthesi 97.7 0.00095 2E-08 61.7 13.8 24 33-56 352-375 (559)
415 TIGR01842 type_I_sec_PrtD type 97.7 7.4E-05 1.6E-09 70.9 7.0 42 96-137 472-515 (544)
416 PRK05986 cob(I)alamin adenolsy 97.7 0.00024 5.3E-09 56.8 8.8 101 33-136 24-158 (191)
417 cd03269 ABC_putative_ATPase Th 97.7 8E-05 1.7E-09 61.5 6.3 42 96-137 146-189 (210)
418 TIGR01166 cbiO cobalt transpor 97.7 3.5E-05 7.6E-10 62.5 4.1 42 96-137 145-188 (190)
419 KOG0055|consensus 97.7 0.00012 2.7E-09 72.9 8.5 39 26-67 376-414 (1228)
420 cd03238 ABC_UvrA The excision 97.7 0.00025 5.3E-09 56.6 8.8 41 97-137 108-150 (176)
421 PF05970 PIF1: PIF1-like helic 97.7 0.00021 4.6E-09 64.1 9.4 105 15-121 6-127 (364)
422 TIGR03608 L_ocin_972_ABC putat 97.7 6E-05 1.3E-09 62.0 5.4 42 96-137 152-195 (206)
423 cd03262 ABC_HisP_GlnQ_permease 97.7 8.9E-05 1.9E-09 61.3 6.4 42 96-137 153-196 (213)
424 cd03253 ABCC_ATM1_transporter 97.7 8.1E-05 1.8E-09 62.6 6.2 44 96-139 155-199 (236)
425 cd03292 ABC_FtsE_transporter F 97.7 8.7E-05 1.9E-09 61.4 6.3 41 96-136 154-196 (214)
426 PRK13889 conjugal transfer rel 97.7 0.00029 6.3E-09 70.1 10.8 112 16-135 349-470 (988)
427 PRK08533 flagellar accessory p 97.7 0.00026 5.5E-09 59.2 9.1 24 33-56 26-49 (230)
428 cd03254 ABCC_Glucan_exporter_l 97.7 7.3E-05 1.6E-09 62.6 5.9 43 96-138 157-200 (229)
429 TIGR01189 ccmA heme ABC export 97.7 0.00012 2.7E-09 59.8 7.0 43 96-138 145-189 (198)
430 cd03258 ABC_MetN_methionine_tr 97.7 8.4E-05 1.8E-09 62.4 6.2 42 96-137 158-202 (233)
431 cd01124 KaiC KaiC is a circadi 97.7 0.00019 4.2E-09 57.9 8.1 23 34-56 2-24 (187)
432 cd03224 ABC_TM1139_LivF_branch 97.7 6.3E-05 1.4E-09 62.6 5.3 41 96-136 150-192 (222)
433 COG1132 MdlB ABC-type multidru 97.7 4.5E-05 9.8E-10 72.7 5.0 39 17-57 343-381 (567)
434 TIGR00708 cobA cob(I)alamin ad 97.7 0.00022 4.8E-09 56.2 8.0 101 33-136 7-140 (173)
435 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.7 8.2E-05 1.8E-09 62.6 6.0 44 96-139 157-201 (238)
436 cd03245 ABCC_bacteriocin_expor 97.7 0.00011 2.4E-09 61.1 6.7 42 96-137 158-200 (220)
437 TIGR01613 primase_Cterm phage/ 97.7 0.00072 1.6E-08 59.1 12.0 126 15-154 54-203 (304)
438 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 0.0012 2.6E-08 53.1 12.5 22 34-55 2-23 (183)
439 PRK13538 cytochrome c biogenes 97.7 0.00012 2.7E-09 60.0 6.8 43 96-138 147-191 (204)
440 cd03218 ABC_YhbG The ABC trans 97.7 6.3E-05 1.4E-09 63.1 5.1 42 96-137 151-194 (232)
441 cd03248 ABCC_TAP TAP, the Tran 97.7 8.2E-05 1.8E-09 62.1 5.8 43 96-138 168-211 (226)
442 PF13207 AAA_17: AAA domain; P 97.7 3.7E-05 8.1E-10 57.3 3.3 22 34-55 2-23 (121)
443 TIGR01277 thiQ thiamine ABC tr 97.7 9.1E-05 2E-09 61.3 5.9 42 96-137 146-190 (213)
444 PRK14532 adenylate kinase; Pro 97.7 0.002 4.4E-08 52.1 13.7 23 33-55 2-24 (188)
445 cd03259 ABC_Carb_Solutes_like 97.7 7.8E-05 1.7E-09 61.6 5.5 42 96-137 148-192 (213)
446 COG0444 DppD ABC-type dipeptid 97.7 0.00053 1.2E-08 58.8 10.5 79 156-234 123-201 (316)
447 COG2842 Uncharacterized ATPase 97.7 0.0014 3E-08 55.6 12.7 178 7-201 69-275 (297)
448 cd03233 ABC_PDR_domain1 The pl 97.7 6.2E-05 1.4E-09 61.7 4.7 30 25-56 29-58 (202)
449 PRK10908 cell division protein 97.7 0.0001 2.2E-09 61.4 6.0 42 96-137 155-198 (222)
450 TIGR02788 VirB11 P-type DNA tr 97.6 0.00093 2E-08 58.5 12.1 36 18-55 133-168 (308)
451 COG4987 CydC ABC-type transpor 97.6 0.00018 3.9E-09 65.5 7.7 38 17-56 352-389 (573)
452 PRK13536 nodulation factor exp 97.6 7.6E-05 1.6E-09 66.1 5.4 42 96-137 190-233 (340)
453 TIGR03574 selen_PSTK L-seryl-t 97.6 0.00018 4E-09 61.0 7.5 23 34-56 2-24 (249)
454 PF10923 DUF2791: P-loop Domai 97.6 0.006 1.3E-07 55.0 17.3 92 96-187 239-371 (416)
455 TIGR01271 CFTR_protein cystic 97.6 6.4E-05 1.4E-09 78.9 5.6 37 17-55 1233-1269(1490)
456 PRK13632 cbiO cobalt transport 97.6 0.0001 2.2E-09 63.4 6.0 44 96-139 160-206 (271)
457 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 0.00012 2.6E-09 61.6 6.3 44 96-139 150-196 (236)
458 smart00487 DEXDc DEAD-like hel 97.6 0.00048 1E-08 55.6 9.6 34 20-55 15-49 (201)
459 cd03288 ABCC_SUR2 The SUR doma 97.6 0.00014 3E-09 62.0 6.7 45 96-140 174-219 (257)
460 cd03231 ABC_CcmA_heme_exporter 97.6 0.00017 3.6E-09 59.1 6.8 46 96-141 143-190 (201)
461 COG4525 TauB ABC-type taurine 97.6 0.00022 4.8E-09 56.6 7.1 177 18-250 20-206 (259)
462 PRK13652 cbiO cobalt transport 97.6 0.00014 3E-09 62.8 6.6 42 96-137 155-199 (277)
463 COG4555 NatA ABC-type Na+ tran 97.6 0.00023 4.9E-09 56.9 7.1 38 19-58 18-55 (245)
464 PRK14247 phosphate ABC transpo 97.6 0.00015 3.3E-09 61.5 6.8 42 96-137 164-206 (250)
465 PRK14269 phosphate ABC transpo 97.6 0.00021 4.6E-09 60.5 7.6 42 96-137 160-202 (246)
466 cd03295 ABC_OpuCA_Osmoprotecti 97.6 0.00016 3.6E-09 61.0 6.9 42 96-137 153-197 (242)
467 PRK14250 phosphate ABC transpo 97.6 0.0001 2.2E-09 62.2 5.4 42 96-137 149-193 (241)
468 PRK00771 signal recognition pa 97.6 0.00092 2E-08 61.0 11.9 27 33-59 97-123 (437)
469 COG4618 ArpD ABC-type protease 97.6 6.7E-05 1.5E-09 67.7 4.4 43 95-137 489-533 (580)
470 COG1118 CysA ABC-type sulfate/ 97.6 6.9E-05 1.5E-09 63.5 4.2 103 154-259 108-227 (345)
471 cd03289 ABCC_CFTR2 The CFTR su 97.6 0.00017 3.7E-09 62.0 6.7 42 96-137 156-198 (275)
472 TIGR02211 LolD_lipo_ex lipopro 97.6 0.00016 3.4E-09 60.2 6.4 42 96-137 159-203 (221)
473 PRK10584 putative ABC transpor 97.6 0.00017 3.6E-09 60.3 6.5 42 96-137 164-208 (228)
474 COG3899 Predicted ATPase [Gene 97.6 0.02 4.3E-07 57.1 21.8 107 96-203 154-266 (849)
475 PRK13647 cbiO cobalt transport 97.6 0.00014 3E-09 62.7 6.1 42 96-137 156-199 (274)
476 PRK13541 cytochrome c biogenes 97.6 0.00049 1.1E-08 56.1 9.0 43 96-138 141-185 (195)
477 PTZ00265 multidrug resistance 97.6 0.00021 4.5E-09 74.8 8.4 37 18-56 1183-1219(1466)
478 PRK13644 cbiO cobalt transport 97.6 0.00014 3E-09 62.6 6.0 44 96-139 154-199 (274)
479 cd03301 ABC_MalK_N The N-termi 97.6 9.8E-05 2.1E-09 61.0 4.9 42 96-137 148-192 (213)
480 cd03237 ABC_RNaseL_inhibitor_d 97.6 0.00063 1.4E-08 57.6 9.8 80 96-176 133-221 (246)
481 cd03256 ABC_PhnC_transporter A 97.6 0.00018 3.9E-09 60.7 6.5 43 96-138 162-207 (241)
482 cd03265 ABC_DrrA DrrA is the A 97.6 0.00013 2.8E-09 60.7 5.6 42 96-137 149-193 (220)
483 PRK10895 lipopolysaccharide AB 97.6 0.00013 2.9E-09 61.5 5.6 42 96-137 155-198 (241)
484 PRK11153 metN DL-methionine tr 97.6 0.00013 2.8E-09 64.9 5.7 42 96-137 158-202 (343)
485 cd03283 ABC_MutS-like MutS-lik 97.6 0.00067 1.4E-08 55.4 9.5 23 33-55 27-49 (199)
486 TIGR00957 MRP_assoc_pro multi 97.6 0.00019 4.2E-09 75.7 7.9 37 18-56 1301-1337(1522)
487 TIGR03411 urea_trans_UrtD urea 97.6 0.00016 3.5E-09 61.0 6.1 42 96-137 161-203 (242)
488 PRK11124 artP arginine transpo 97.6 0.00015 3.3E-09 61.2 5.9 42 96-137 159-202 (242)
489 cd02021 GntK Gluconate kinase 97.6 0.00034 7.4E-09 54.3 7.5 22 34-55 2-23 (150)
490 PRK14737 gmk guanylate kinase; 97.6 0.0047 1E-07 49.8 14.2 23 33-55 6-28 (186)
491 KOG0054|consensus 97.6 0.00014 3.1E-09 73.9 6.5 40 15-56 1152-1191(1381)
492 cd01128 rho_factor Transcripti 97.6 0.00025 5.3E-09 59.8 7.0 26 33-58 18-43 (249)
493 cd01121 Sms Sms (bacterial rad 97.6 0.0007 1.5E-08 60.6 10.2 36 22-57 71-108 (372)
494 TIGR01288 nodI ATP-binding ABC 97.6 0.00013 2.8E-09 63.8 5.5 42 96-137 153-196 (303)
495 COG1136 SalX ABC-type antimicr 97.6 0.00051 1.1E-08 56.5 8.5 73 159-233 117-189 (226)
496 PRK10253 iron-enterobactin tra 97.6 0.00023 5.1E-09 60.9 7.0 42 96-137 161-205 (265)
497 PRK09493 glnQ glutamine ABC tr 97.6 0.00016 3.4E-09 61.1 5.8 42 96-137 154-197 (240)
498 COG3910 Predicted ATPase [Gene 97.5 0.0023 5E-08 50.6 11.6 49 6-55 13-61 (233)
499 PRK11650 ugpC glycerol-3-phosp 97.5 0.00013 2.8E-09 65.1 5.5 42 96-137 152-196 (356)
500 PRK13642 cbiO cobalt transport 97.5 0.00019 4.1E-09 61.9 6.3 44 96-139 158-204 (277)
No 1
>KOG0991|consensus
Probab=100.00 E-value=9.3e-62 Score=383.25 Aligned_cols=313 Identities=72% Similarity=1.138 Sum_probs=306.4
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
+|||||..+.|++|+++.++.++.+.+.|+.||++|.||||+||||.+.++|++|.++.....++++|++++++++.+|+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn 97 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRN 97 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHH
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~ 160 (317)
.++.|++..+.+|.++.+++|+||+|.|+..+|.+|.+.||-++..++|.++||...++.++|+|||..++|..+++.++
T Consensus 98 ~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qi 177 (333)
T KOG0991|consen 98 KIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQI 177 (333)
T ss_pred HHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHH
Q psy879 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240 (317)
Q Consensus 161 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~ 240 (317)
...|.++++.|++.++++.++.++..+.||+|+++|.||..+.+.+.++.|.|.++++.+++..+.+++.++..++..+|
T Consensus 178 L~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A 257 (333)
T KOG0991|consen 178 LKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEA 257 (333)
T ss_pred HHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhccC
Q psy879 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKN 313 (317)
Q Consensus 241 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~~~ 313 (317)
+.++..+.+.|++|.+|+..+||.++.+..++..+.+++..++-++.++..|+|..|+|..|++++|.+..+.
T Consensus 258 ~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~glla~l~~~~~k~ 330 (333)
T KOG0991|consen 258 LKILAELWKLGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLLAKLCKVGEKA 330 (333)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887764
No 2
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=2.2e-54 Score=378.68 Aligned_cols=312 Identities=66% Similarity=1.096 Sum_probs=290.5
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
+|||||++|++++||+++++.|+.++.+++.||++|+||||+|||++++++|+++.|..+...++++++++..+.+.+++
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998876666788999988888899998
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHH
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~ 160 (317)
.+..+.+.......+.++++||||+|.|+..++++|++++|.++.+++||++||...++.++++|||..++|++++.+++
T Consensus 84 ~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l 163 (319)
T PLN03025 84 KIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 163 (319)
T ss_pred HHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHH
Confidence 88877766543334678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHH
Q psy879 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240 (317)
Q Consensus 161 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~ 240 (317)
..+|..+++++|+.++++++++++..++||+|.+++.||.++.+.+.|+.+++.++++...++.++++++++..++...+
T Consensus 164 ~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~~~~a 243 (319)
T PLN03025 164 LGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDA 243 (319)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999977666678999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhcc
Q psy879 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 241 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~~ 312 (317)
+.++++|+..|++|..|+..+++.+....+++..+.+++.+++++++++..|.++.++|+.|+++++.+..+
T Consensus 244 ~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~~~~ 315 (319)
T PLN03025 244 CDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLVRET 315 (319)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877677888899999999999999999999999999999999987543
No 3
>KOG0989|consensus
Probab=100.00 E-value=2.2e-53 Score=349.13 Aligned_cols=310 Identities=36% Similarity=0.534 Sum_probs=283.0
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-CCCceEEecCCCCcChHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-FKDAVLELNASNDRGIDTVR 79 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~i~ 79 (317)
+|||||++|+++.||+++++.|.+.+..+..||||||||||||||+++++++++++|+. ....+.+.|+++.+|+..++
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr 106 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVR 106 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchh
Confidence 58999999999999999999999999998889999999999999999999999999844 55667888999999999889
Q ss_pred HHHHHHHhhcccC------CCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeec
Q psy879 80 NKIKMFAQQKVTL------PPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYN 153 (317)
Q Consensus 80 ~~~~~~~~~~~~~------~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~ 153 (317)
+.+..|++..... +...++|+|+||+|.|+.++|++|++.||.++.+++||++||..++++.++.|||+.++|+
T Consensus 107 ~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 8888877654332 2245699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHH-HHhhcCCCCHHHHHHHHHHH
Q psy879 154 KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEY-VFKVCDEPHPLAVKEMLLNC 232 (317)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~-v~~~~~~~~~~~i~~l~~~~ 232 (317)
++.++.+...|+.+|.+||+++++++++.++..++||+|+|+..||.++..++.|+... ++.+.+...++.+.++++..
T Consensus 187 ~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a 266 (346)
T KOG0989|consen 187 KLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELA 266 (346)
T ss_pred CcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999554 44555588888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
...|..+....+++++..|++|..+++++..+.... +..+..+.++...+.+.+.++..|.+.+++|-.|.....+.+
T Consensus 267 ~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~~~~ql~ 345 (346)
T KOG0989|consen 267 LSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLEAEKQLR 345 (346)
T ss_pred HccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998877655 888889999999999999999999999999999988776543
No 4
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.2e-48 Score=357.40 Aligned_cols=304 Identities=23% Similarity=0.311 Sum_probs=266.4
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC---------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPS--------------------- 59 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~--------------------- 59 (317)
+||||++|++++||+++++.|..++.+|+++| |||+||+|+||||+|+.+|+.++|..
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccC
Confidence 69999999999999999999999999999999 89999999999999999999998742
Q ss_pred CCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
....++++++.+..+++++++........+. .++++|+||||+|.|+.+++|+|+++||+|+++++||++|+.+.++
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~---~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPA---QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhh---cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 1234667777667789999887766655443 3789999999999999999999999999999999999999999999
Q ss_pred chhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhC--CCcccHHHHHhhc
Q psy879 140 IEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG--FGHVTAEYVFKVC 217 (317)
Q Consensus 140 ~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~--~~~i~~~~v~~~~ 217 (317)
+++|+|||+.++|.+++.+++.+||..+++++|+.++++++..++..++||+|.++++|++++.. .+.|+.+++..++
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~ll 241 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987653 5689999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---C-------------------------
Q psy879 218 DEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---D------------------------- 269 (317)
Q Consensus 218 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~---~------------------------- 269 (317)
+....+.++++++++..++...++.++.+++..|.++..++..+.++++.+ .
T Consensus 242 g~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l~~qa 321 (584)
T PRK14952 242 GATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERMREQA 321 (584)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988875554333 0
Q ss_pred --CChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHH
Q psy879 270 --IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308 (317)
Q Consensus 270 --~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~ 308 (317)
++.....++++.+.+....++.+.++++.+|.++.++|.
T Consensus 322 ~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 322 ARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 111223346775566666666666999999999999995
No 5
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.4e-48 Score=350.29 Aligned_cols=308 Identities=24% Similarity=0.298 Sum_probs=273.0
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC--------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------- 60 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------- 60 (317)
+||||++|++++||+++++.|..+++.|+++| +|||||+|+|||++|+.+++.+.|...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT 88 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence 79999999999999999999999999999988 999999999999999999999987521
Q ss_pred CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 61 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
...++++++....+.+++++........+ ..++++|+||||+|.|+.+.+++|++++|+|++++++|++++...++.
T Consensus 89 ~~d~~~i~g~~~~gid~ir~i~~~l~~~~---~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIRQINETVLFTP---SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred CCceEEeeccccCCHHHHHHHHHHHHhhh---hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 12355566555667788887665554443 236899999999999999999999999999999999999999999999
Q ss_pred hhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCC
Q psy879 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 141 ~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~ 219 (317)
++|+|||..++|++++++++..|+..+++++|+.+++++++.++..++||+|.+++++++... ..+.|+.++|.++++.
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~ 245 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGL 245 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999998654 2356999999999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHH
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--------------DIPEPLKLSIIQEIGNV 285 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~ 285 (317)
..++.++++++++..++..+++.++++|+..|++|..++..+.++++.+ .++.....++++.+.++
T Consensus 246 ~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~~L~~ii~~l~e~ 325 (451)
T PRK06305 246 LSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSEQLLEIIDFLGES 325 (451)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765544432 45666778899999999
Q ss_pred HhHHhcCCCcHHHHHHHHHHHHHhhcc
Q psy879 286 HLRISEGVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 286 ~~~l~~g~~~~l~le~~~~~~~~~~~~ 312 (317)
|++|++|.++.+.||.|+.+++.....
T Consensus 326 d~~lk~~~~~k~~lE~lll~l~~~~~~ 352 (451)
T PRK06305 326 AKHIQLTIFEKTFLETVIIHLIRIYQR 352 (451)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999976543
No 6
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.7e-48 Score=350.26 Aligned_cols=306 Identities=23% Similarity=0.349 Sum_probs=273.7
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF------------------- 60 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~------------------- 60 (317)
.+||||++|++++||+++.+.|..++++|+++| ||||||+|+|||++|+++++.+.|...
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENR 84 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcC
Confidence 379999999999999999999999999999999 899999999999999999999986432
Q ss_pred CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 61 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
...++++++.+..+++++++.+......+ ..++++|+||||+|.|+.+++++|+++||+||++++||++|+++.+++
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P---~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKP---SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCc---ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 23467777766678899998887654443 237899999999999999999999999999999999999999999999
Q ss_pred hhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCC
Q psy879 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 141 ~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~ 219 (317)
++|+|||+.++|.+++.+++..|+..++.++|+.++++++..++..++||+|.+++.|+.+.. ..+.|+.++|.++++.
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg~ 241 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999987655 4568999999999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHhHHhcCC
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------DIPEPLKLSIIQEIGNVHLRISEGV 293 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~l~~g~ 293 (317)
...+.++++++++..++...++.++.++ .|+++..++..+...++.. ........+.+..+.+.+..+..|.
T Consensus 242 ~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~~~k~~l~~g~ 319 (535)
T PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILSSAKSLLKEGA 319 (535)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998 5799999999987766532 2344457788999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhc
Q psy879 294 NSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 294 ~~~l~le~~~~~~~~~~~ 311 (317)
+++++++.++.++|....
T Consensus 320 ~~~i~l~~~~~~~~~~~~ 337 (535)
T PRK08451 320 DDGFVLLLMLFKMKEALK 337 (535)
T ss_pred CcHHHHHHHHHHHHHhcC
Confidence 999999999999998543
No 7
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.9e-48 Score=348.32 Aligned_cols=306 Identities=22% Similarity=0.346 Sum_probs=271.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|.+++..|+++| +||+||+|+||||+|+.+|+.++|... .
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCC
Confidence 69999999999999999999999999999997 999999999999999999999876432 2
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+++++++.+......++ .++++|+||||+|.|+.+++++|++++|+||+++.||++|+...++.+
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~---~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPI---SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccc---cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 45788888888899999998887766653 378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|.+++.+++..|+..+++++|+.+++++++.+++.++||+|.++++++++.. ..+.|+.++|.++++..
T Consensus 162 tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~~ 241 (491)
T PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCV 241 (491)
T ss_pred HHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999988654 45689999999999988
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------C--------------CChHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----------D--------------IPEPLK 275 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----------~--------------~~~~~~ 275 (317)
..+.++++++++..+|..+++.++++|+..| +|..++..+...+..+ . ++....
T Consensus 242 ~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (491)
T PRK14964 242 DKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKIGSTIFL 320 (491)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhCCCHHHH
Confidence 8899999999999999999999999999876 6777776654322111 1 233344
Q ss_pred HHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 276 LSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 276 ~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
.++++.+.+....++...++++++|+++.++|....
T Consensus 321 ~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~~~ 356 (491)
T PRK14964 321 SRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYLSD 356 (491)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCC
Confidence 568899999999999999999999999999997543
No 8
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.9e-48 Score=341.43 Aligned_cols=305 Identities=23% Similarity=0.301 Sum_probs=266.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++||+++++.|..++..|+++| ++|+||+|+||||+|+++++.+.|....
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC 87 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 79999999999999999999999999999999 8999999999999999999999764211
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..+.++++....+.+++++.+..+...+ ..++++|+||||+|.++..++++|++++|+|++++.||++|++.+++.+
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p---~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSP---SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCc---ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 1344555544467778887776655443 2367899999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+++|||..++|++++.+++.+|+..+++++|+.+++++++.++..++||+|.+++.++.++. +.+.|+.++|.++++..
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~ 244 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLL 244 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999987644 56789999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------C---------------------CChH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------D---------------------IPEP 273 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------~---------------------~~~~ 273 (317)
.+..++++++++..++..+++.+++++...|++|..++..+...++.+ + .+..
T Consensus 245 ~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (363)
T PRK14961 245 NEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQNNKKT 324 (363)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999998875543322 1 1112
Q ss_pred HHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 274 LKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 274 ~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
...++++.+.+...+++.++|+++++|.++.+++.-
T Consensus 325 ~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~ 360 (363)
T PRK14961 325 NIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINA 360 (363)
T ss_pred HHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhC
Confidence 233378999999999999999999999999999864
No 9
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-48 Score=360.48 Aligned_cols=305 Identities=22% Similarity=0.317 Sum_probs=271.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++.+|+++| ||||||+|+|||++++.+++.+.|... .
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 79999999999999999999999999999999 899999999999999999999987532 2
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+++++++.+......+. .++++|+||||+|.|+..++|+|+++||+|+++++||++|+.++++++
T Consensus 88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~---~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRELRENVKYLPS---RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCeeeeeccCccCHHHHHHHHHHHHhccc---cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 23566776666788899888777655542 378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|++++.+++..|+..+++++|+.++++++..++..++||+|.++++|+++.. ..+.|+.++|..+++..
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~llG~~ 244 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVV 244 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999987654 44679999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------------CCCh
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL----------------------------DIPE 272 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~----------------------------~~~~ 272 (317)
..+.++++++++..++...++.++.++...|.++..++..+.++++.+ .++.
T Consensus 245 ~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~~A~~~s~ 324 (576)
T PRK14965 245 DRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRAQAAAADA 324 (576)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999998888765543322 1122
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 273 PLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 273 ~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
....++++.+.+.++.|+.+.++++.||.++.++|..
T Consensus 325 ~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~ 361 (576)
T PRK14965 325 ADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATL 361 (576)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence 2344489999999999999999999999999999974
No 10
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.5e-48 Score=346.24 Aligned_cols=307 Identities=22% Similarity=0.323 Sum_probs=269.4
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF------------------- 60 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~------------------- 60 (317)
.+||||++|++++||+++++.|..++++|+.+| |+|+||||+||||+|+++|+.+.|...
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 379999999999999999999999999999999 999999999999999999999988421
Q ss_pred --------CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEE
Q psy879 61 --------KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALA 132 (317)
Q Consensus 61 --------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~ 132 (317)
...+.++++....+.+++++....+...++ .++++|+||||+|.|+.+.++.|++++|+|++.++||++
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~---~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQ---KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchh---cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 012344555455668888887777765553 378999999999999999999999999999999999999
Q ss_pred ecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh------CCC
Q psy879 133 CNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN------GFG 206 (317)
Q Consensus 133 ~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~------~~~ 206 (317)
++...++.++++|||+.++|.+++++++..|+..+++.+|+.+++++++.++..++||+|.++++++++.. +.+
T Consensus 164 t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~ 243 (397)
T PRK14955 164 TTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEG 243 (397)
T ss_pred eCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999997532 346
Q ss_pred cccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------------------
Q psy879 207 HVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------------------ 268 (317)
Q Consensus 207 ~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------------------ 268 (317)
.|+.++|.+++....++.+|++++++..++...++.++++|...|++|..|+..+.++++.+
T Consensus 244 ~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~~~~~ 323 (397)
T PRK14955 244 SIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPDAV 323 (397)
T ss_pred ccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHHH
Confidence 89999999999999999999999999999999999999999999999999988875554332
Q ss_pred ---------CCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 269 ---------DIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 269 ---------~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
.++.....++++.+.++|+++++|.|+++.+|.|+.+++...
T Consensus 324 ~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 324 RERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 122222334899999999999999999999999999999755
No 11
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.3e-48 Score=344.21 Aligned_cols=304 Identities=24% Similarity=0.325 Sum_probs=258.0
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++.+++++| |+|+||+|+||||+|+.+|+.+.|... .
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCC
Confidence 79999999999999999999999999999998 999999999999999999999987431 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++....+.+.+++....+...+ ..++++|+||||+|.|+.+++++|++.+|+|+.+++||++|+.+.++.+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p---~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAP---MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhh---hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 2356777766778888888776665443 2367899999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh-hCCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH-NGFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~-~~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|++++.+++..+|..++.++|+.++++++..+++.++||+|.+++.|+.+. ...+.|+.+.|.++++..
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~ 246 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYH 246 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999998754 345679999999999999
Q ss_pred CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------CCChHHH-----------
Q psy879 221 HPLAVKEMLLNCVEGNM-KDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-------------DIPEPLK----------- 275 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~----------- 275 (317)
..+.++++++++..+|. .+++.++..++..|++|..++..+...++.+ ..++...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDFENVD 326 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHHHhcC
Confidence 99999999999999875 6899999999999999999887764433322 1122111
Q ss_pred ----HHHHHHH----HHH-HhHHhcCCCcHHHHHHHHHHHHH
Q psy879 276 ----LSIIQEI----GNV-HLRISEGVNSLLQLSGLLARLCI 308 (317)
Q Consensus 276 ----~~~~~~l----~~~-~~~l~~g~~~~l~le~~~~~~~~ 308 (317)
.+++..+ ..+ +.+++...++++.+|..++++|.
T Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 327 SSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 1122222 222 45567778999999999999995
No 12
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.9e-48 Score=353.93 Aligned_cols=308 Identities=20% Similarity=0.257 Sum_probs=269.5
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++.+|+++| |||+||+|+||||+++.+++.++|... .
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 79999999999999999999999999999999 899999999999999999999987421 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..+++++..+.++++++++.+......+ ..++++|+||||+|.|+...+|+|+++||+++.+++||++|++..++++
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P---~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAP---VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhcc---ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 2467788777788999999887765444 2368999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh-hCCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH-NGFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~-~~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|++++.+++.++|..++.++++.++++++..|++.++||+|.++++++.+. .+.+.|+.+.|..+++..
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGAL 244 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999986544 456789999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------------CCChHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-------------------------DIPEPLK 275 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------------------------~~~~~~~ 275 (317)
....++++++.+..++...++.++.+|...|.+...++..+..++..+ .++....
T Consensus 245 d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~~~l 324 (830)
T PRK07003 245 DQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQV 324 (830)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999998876666543332211 1222223
Q ss_pred HHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhcc
Q psy879 276 LSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 276 ~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~~ 312 (317)
..+++++......++...++++++|+.+++++.....
T Consensus 325 ~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~~p~ 361 (830)
T PRK07003 325 QLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEPA 361 (830)
T ss_pred HHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcCCCc
Confidence 3488999999999999999999999999999875543
No 13
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.8e-48 Score=351.70 Aligned_cols=307 Identities=20% Similarity=0.262 Sum_probs=268.9
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++.+++++| |||+||+|+|||++|+.+|+.++|... .
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRF 87 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCC
Confidence 79999999999999999999999999999999 899999999999999999999987531 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+++++++.+..+...+ ..++++|+||||+|.|+.+++++|+++||+||++++||++|+++.++++
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p---~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAP---TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhcc---ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 2367788777789999999887766554 3378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||..++|.+++.+++..++..+++++|+.++++++..++..++||+|.++++++.+.. +.+.|+.++|.++++..
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~ 244 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTI 244 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999976544 56789999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------CCChHHHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----------------------DIPEPLKLS 277 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~~~ 277 (317)
.++.++++++++..++...++..+++|...|+++..++..+...+..+ .++......
T Consensus 245 ~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (509)
T PRK14958 245 EPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKLLDREDVQL 324 (509)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999987777754432221 111122223
Q ss_pred HHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 278 IIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 278 ~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
+++........++...++++.+|+.+.+++.-.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 358 (509)
T PRK14958 325 FYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYP 358 (509)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCC
Confidence 5666666778888888999999999999997554
No 14
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-47 Score=355.22 Aligned_cols=306 Identities=21% Similarity=0.282 Sum_probs=270.2
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++||+++++.|+.++++|+.+| |||+||+|+||||+|+.+|+.+.|....
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC 87 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC 87 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence 69999999999999999999999999999999 9999999999999999999999884310
Q ss_pred --------CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEe
Q psy879 62 --------DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALAC 133 (317)
Q Consensus 62 --------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~ 133 (317)
..+.++++....+++++++....+...++ .++++|+||||+|.|+..++++|+++||+|+++++||+++
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~---~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQ---KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhh---cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 12344544455678899988877765553 3789999999999999999999999999999999999999
Q ss_pred cCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh------CCCc
Q psy879 134 NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN------GFGH 207 (317)
Q Consensus 134 ~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~------~~~~ 207 (317)
+...++.++|+|||+.++|.+++.+++..|+..+++++|+.+++++++.++..++||+|.++++++++.. ..+.
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~ 244 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKV 244 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCc
Confidence 9889999999999999999999999999999999999999999999999999999999999999997544 2568
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------C---------
Q psy879 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---------D--------- 269 (317)
Q Consensus 208 i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~---------~--------- 269 (317)
|+.++|.+++....++.+|++++++..++..+++.++++|...|++|..|+..+.++++.+ +
T Consensus 245 It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~~v~ 324 (620)
T PRK14954 245 IAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPESVK 324 (620)
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999876655433 1
Q ss_pred ---------CChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 270 ---------IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 270 ---------~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
.+.....++++.+.++|.+|+++.|+++.+|.|+.++|...
T Consensus 325 ~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 325 ERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 11112333799999999999998899999999999999865
No 15
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-47 Score=358.16 Aligned_cols=305 Identities=19% Similarity=0.277 Sum_probs=267.7
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|++++.+|+++| |||+||+|+|||++|+++++.+.|... .
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 69999999999999999999999999999999 799999999999999999999987521 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+++.+|+.+..+...+. .++++|+||||+|.|+.+++++|+++||+|+.+++||++|+++.++++
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~---~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPS---RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhh---cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence 12455666555788889988877655442 378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh-hCCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH-NGFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~-~~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|++++.+++..+|..++..+++.++++++..|+..++|++|.++++++.+. .+.+.++.+.|..+++..
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~llG~i 244 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSI 244 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999997543 356789999999999888
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------------------------CCChHHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------------------------DIPEPLKL 276 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------------------------~~~~~~~~ 276 (317)
....+..+++.+..++...++.++..|+..|+++..|+..+...++.+ .++.....
T Consensus 245 D~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~~~s~~~L~ 324 (944)
T PRK14949 245 DEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAEQLSPEQVQ 324 (944)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHHhCCHHHHH
Confidence 888899999999999999999999999999999999998865543322 11222234
Q ss_pred HHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 277 SIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 277 ~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
++++.+.+...+|+.+.|+++.||+++++++..
T Consensus 325 ~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~ 357 (944)
T PRK14949 325 LYYQILLTGRKDLPHAPDPKSGLEMALLRAVAF 357 (944)
T ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999864
No 16
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.4e-47 Score=352.50 Aligned_cols=306 Identities=25% Similarity=0.371 Sum_probs=272.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++||+++++.|..++..|+.+| +||+||+|+|||++|+.+|+.++|....
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i 95 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAI 95 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHH
Confidence 79999999999999999999999999999998 9999999999999999999999875321
Q ss_pred -----CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 62 -----DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 62 -----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
..++++++.+..+++++++.+......++ .++++||||||+|.|+..++++|+++||+|+++++|||+|+..
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~---~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV---SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchh---cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 13456666666789999998877665553 3789999999999999999999999999999999999999999
Q ss_pred CcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHh
Q psy879 137 EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFK 215 (317)
Q Consensus 137 ~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~ 215 (317)
.+++++|+|||+.++|.+++++++..|+..+++++|+.+++++++.++..++||+|.++++++++.. +.+.|+.++|.+
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~e~V~~ 252 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRD 252 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987543 556899999999
Q ss_pred hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------CC------------
Q psy879 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-------------DI------------ 270 (317)
Q Consensus 216 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------------~~------------ 270 (317)
+++......++++++++..++...++.++.+++..|.+|..++..+.++++.+ ++
T Consensus 253 llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~~kl~~~A 332 (598)
T PRK09111 253 MLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTRGAEFA 332 (598)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876544321 12
Q ss_pred ---ChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 271 ---PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 271 ---~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
+.....++++.+.+.+..++++.|+++++|+++.++|...
T Consensus 333 ~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~~ 375 (598)
T PRK09111 333 KKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAA 375 (598)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhhc
Confidence 2223445999999999999999999999999999998643
No 17
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.1e-47 Score=352.16 Aligned_cols=304 Identities=27% Similarity=0.419 Sum_probs=272.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++.+.|..++.+++++| |||+||+|+|||++|+.+++.+.|... .
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSL 87 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 68999999999999999999999999999999 999999999999999999999987542 2
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+.+++++........+. .++++|+||||+|.|+..++++|++++|+||.+++||++|+.+.++++
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~---~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPS---EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcc---cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 34667777667888889888777665543 378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.+.|++++.+++..|+..+++++|+.++++++..++..++||+|.+++.|+.+.. +.+.|+.++|.++++..
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~ 244 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSV 244 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999987644 46679999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------------CCChH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---------------------------DIPEP 273 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~ 273 (317)
..+.++++++++..+|...++.++.++...|.++..++..+.++++.+ .++..
T Consensus 245 ~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~a~~~s~~ 324 (559)
T PRK05563 245 SQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEKLDIE 324 (559)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999998887765543322 12233
Q ss_pred HHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHH
Q psy879 274 LKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308 (317)
Q Consensus 274 ~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~ 308 (317)
...++++.+.+++.+++.|.++++.+|.++.++|.
T Consensus 325 ~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 325 RLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 35558999999999999999999999999999997
No 18
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=1.8e-46 Score=330.58 Aligned_cols=310 Identities=46% Similarity=0.771 Sum_probs=278.0
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
+|||||++|++++|++++++.+..+++.+..||++|+||||+|||++++++++.+.+..+...++++++++..+.+.+++
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRN 87 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999998776666677887766555555555
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHH
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~ 160 (317)
.+..+..... ...+.+++|+|||+|.+..+.++.|+++++.+++++.+|++++...++.+++++||..++|++++++++
T Consensus 88 ~i~~~~~~~~-~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 88 KIKEFARTAP-VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred HHHHHHhcCC-CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 5555443321 112468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHH
Q psy879 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240 (317)
Q Consensus 161 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~ 240 (317)
..++..++.++|+.+++++++.++..++||+|.+++.++.++...+.|+.++|.+++....++.++++++++..++..++
T Consensus 167 ~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~a 246 (319)
T PRK00440 167 AERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGDFTEA 246 (319)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999988777678999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 241 YKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 241 ~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
+.++++|+ ..|+++..|+..+...+...+.++....++++++.++|+++++|.|+.++||.|++++|.+..
T Consensus 247 ~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~~~ 318 (319)
T PRK00440 247 REKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALLGK 318 (319)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcc
Confidence 99999997 589999999988876554447889999999999999999999999999999999999997754
No 19
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7e-47 Score=352.80 Aligned_cols=306 Identities=24% Similarity=0.360 Sum_probs=270.8
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC--------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------- 60 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------- 60 (317)
+||||++|++++||+++++.|..++++|+++| ||||||+|+|||++|+.+++.+.|...
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~ 88 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQR 88 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCC
Confidence 79999999999999999999999999999999 999999999999999999999986421
Q ss_pred CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 61 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
...+.++++.+..+.+++++.+..+...++ .++++|+||||++.|+.+++++|+++||+||++++||++|+...++.
T Consensus 89 ~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~---~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQ---IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhCcc---cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 234566666656678889888876655553 37899999999999999999999999999999999999999999999
Q ss_pred hhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCC
Q psy879 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 141 ~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~ 219 (317)
++|+|||+.++|.+++++++..|+..++.++|+.+++++++.++..++||+|.+++++++.+. ..+.|+.++|.+.+..
T Consensus 166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~ 245 (614)
T PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNI 245 (614)
T ss_pred HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999988543 3344999999999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------------CCCh
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---------------------------DIPE 272 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~---------------------------~~~~ 272 (317)
...+.+|++++++..++...++..+++|+..|+++..|+..+.++++.+ ..+.
T Consensus 246 ~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~qa~~~s~ 325 (614)
T PRK14971 246 LDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQAQKCPM 325 (614)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999998876654433 1112
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 273 PLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 273 ~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
....++++.+.++|+++++|.|+++.+|.|+.++|...
T Consensus 326 ~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~ 363 (614)
T PRK14971 326 SFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLT 363 (614)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 22344899999999999999999999999999999864
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.8e-47 Score=344.90 Aligned_cols=307 Identities=21% Similarity=0.278 Sum_probs=269.2
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC--------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------- 60 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------- 60 (317)
+||||++|++++||+++++.|.+++.+|+++| |||+||+|+||||+++.+++.++|...
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 69999999999999999999999999999999 899999999999999999999988321
Q ss_pred ----CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 61 ----KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 61 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
...+++++..+..+++++++.+......+ ..++++|+||||+|.|+...+|+||++||+|+.++.||++|+++
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P---~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP---TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhch---hcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 01466777777788999999888766554 23789999999999999999999999999999999999999999
Q ss_pred CcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH-hhhCCCcccHHHHHh
Q psy879 137 EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQS-THNGFGHVTAEYVFK 215 (317)
Q Consensus 137 ~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~-~~~~~~~i~~~~v~~ 215 (317)
.+++++|+|||+.++|++++.+++.++|..++.++++.+++++++.++..++|++|.++++++. +..+.+.|+.+.|.+
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~ 244 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRG 244 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975 334567899999999
Q ss_pred hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------------CC
Q psy879 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-------------------------DI 270 (317)
Q Consensus 216 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------------------------~~ 270 (317)
+++....+.+.++++.+..++...++.++..+...|.++..++..+...+..+ .+
T Consensus 245 ~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~~a~~~ 324 (700)
T PRK12323 245 MLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRRLAGRF 324 (700)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHHHHHhC
Confidence 99999988999999999999999999999999999999766665543222111 12
Q ss_pred ChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
+......+++.+......++...++++++|+.+++++....
T Consensus 325 s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~~p 365 (700)
T PRK12323 325 DAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFRP 365 (700)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCC
Confidence 33334458899999999999999999999999999997654
No 21
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.2e-46 Score=342.15 Aligned_cols=307 Identities=22% Similarity=0.323 Sum_probs=269.8
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC--------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------- 60 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------- 60 (317)
+||||++|++++||+++++.|..++.+++.+| ++|+||+|+||||+|+.+|+.+.|...
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~ 92 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFN 92 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHh
Confidence 69999999999999999999999999999887 999999999999999999999987431
Q ss_pred ---CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 61 ---KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 61 ---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
...++++++.+..+++++++.+......++ .++++|+||||++.++..++++|++++|+|+++++||++|+...
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~---~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPL---QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccc---cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 124566777667889999998877665553 37899999999999999999999999999999999999999999
Q ss_pred cCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-C---CCcccHHHH
Q psy879 138 KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-G---FGHVTAEYV 213 (317)
Q Consensus 138 ~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~---~~~i~~~~v 213 (317)
+++++++|||+.++|++++.+++..|+..+++++|+.+++++++.++..++||+|.++++|++++. . .+.|+.++|
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V 249 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVI 249 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998744 2 347999999
Q ss_pred HhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------C-----------------
Q psy879 214 FKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-------D----------------- 269 (317)
Q Consensus 214 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------~----------------- 269 (317)
.++++...++.++++++++..++...++.++++|+..|++|..++..+..+++.+ +
T Consensus 250 ~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~ 329 (507)
T PRK06645 250 NQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDRTKSIL 329 (507)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877654332211 1
Q ss_pred --CChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 270 --IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 270 --~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
++.....++++.+.+....++...++++++|+++.++|....
T Consensus 330 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~~~ 373 (507)
T PRK06645 330 DKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTS 373 (507)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhcc
Confidence 111223348889999999999999999999999999987543
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.7e-47 Score=344.27 Aligned_cols=309 Identities=20% Similarity=0.264 Sum_probs=270.5
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF------------------- 60 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~------------------- 60 (317)
.+||||++|++++||+++.+.|..++.+|+++| |||+||+|+|||++|+++|+.+.|...
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCC
Confidence 379999999999999999999999999999988 899999999999999999999987421
Q ss_pred CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 61 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
...++++++.+..+++++|+.+......+. .++++|+||||+|.|+..++++|++++|++++++.||++|+++.+++
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~---~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPT---QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhh---cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 124677777767788999988876655542 36889999999999999999999999999999999999999999999
Q ss_pred hhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh-hCCCcccHHHHHhhcCC
Q psy879 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH-NGFGHVTAEYVFKVCDE 219 (317)
Q Consensus 141 ~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~-~~~~~i~~~~v~~~~~~ 219 (317)
++++|||..++|.+++.+++.++|..++.++|+.++++++..++..++||+|.++++++.+. .+.+.|+.++|..+++.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~ 242 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGL 242 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999997644 36678999999999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------CCChH
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--------------------------DIPEP 273 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--------------------------~~~~~ 273 (317)
...+.++++++++..++...++.++.++...|.++..++..+...++.+ .++..
T Consensus 243 ~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~~s~~ 322 (702)
T PRK14960 243 IDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQ 322 (702)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999987777654332211 12222
Q ss_pred HHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhcc
Q psy879 274 LKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 274 ~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~~ 312 (317)
....+++.+......++...++++++|+++.+++...+.
T Consensus 323 ~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~~p~ 361 (702)
T PRK14960 323 DLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPL 361 (702)
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCC
Confidence 334488888899999999999999999999999976543
No 23
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-46 Score=343.27 Aligned_cols=303 Identities=26% Similarity=0.352 Sum_probs=272.9
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC------------------CC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF------------------KD 62 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~------------------~~ 62 (317)
+||||++|++++||+++++.|..++.+++++| +|||||||+||||+|+++++.+.|... ..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 79999999999999999999999999999999 699999999999999999999976421 23
Q ss_pred ceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchh
Q psy879 63 AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEP 142 (317)
Q Consensus 63 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (317)
.++++++....+.+.+++....+...++ .+.++|+||||+|.++.+.+++|++++++++.++++|++++.+.++.++
T Consensus 86 dv~el~~~~~~~vd~iR~l~~~~~~~p~---~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 86 DVLEIDAASNNSVEDVRDLREKVLLAPL---RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccc---cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 4667777667788888887665554442 3688999999999999999999999999999999999999999999999
Q ss_pred HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCH
Q psy879 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHP 222 (317)
Q Consensus 143 i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~ 222 (317)
++|||..++|.+++.+++..|+..++.++|+.++++++..++..++||+|.++++|+++....+.|+.++|.++++...+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~ 242 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQ 242 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999997766668999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHHhHH
Q psy879 223 LAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKT-------------LDIPEPLKLSIIQEIGNVHLRI 289 (317)
Q Consensus 223 ~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~l 289 (317)
+.++++++++..++..+++.++++|+..|++|..|+..+.++++. +..++....+++..+.+.++++
T Consensus 243 ~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 322 (504)
T PRK14963 243 ERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMTALDEQMERF 322 (504)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877662 2335556788999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHH
Q psy879 290 SEGVNSLLQLSGLLARLCI 308 (317)
Q Consensus 290 ~~g~~~~l~le~~~~~~~~ 308 (317)
.++.+ +..+|..++++|.
T Consensus 323 ~~~~~-~~~l~~~l~~~~~ 340 (504)
T PRK14963 323 ARRSD-ALSLELALLHALL 340 (504)
T ss_pred Hhccc-hhHHHHHHHHHHh
Confidence 88885 7889999999985
No 24
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.4e-47 Score=360.46 Aligned_cols=304 Identities=22% Similarity=0.311 Sum_probs=267.5
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC--------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------- 60 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------- 60 (317)
+||||++|++++||+++++.|..++.+++++| |||+||+|+|||++++.|++.|+|...
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCC
Confidence 69999999999999999999999999999999 999999999999999999999987431
Q ss_pred -CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 61 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
...+++++..+..+++++++........+ ..++++|+||||+|.|+...+|+|+++||+++.+++|||+|++.+++
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p---~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAP---AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhch---hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 23456677666678899998766554443 23789999999999999999999999999999999999999999999
Q ss_pred chhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh--CCCcccHHHHHhhc
Q psy879 140 IEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVC 217 (317)
Q Consensus 140 ~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~--~~~~i~~~~v~~~~ 217 (317)
+++|+|||+.++|.+++.+++.+||.++++++|+.++++++..++..++||+|.++++|++++. +.+.|+.+++..++
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~all 243 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAVALL 243 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998765 35679999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----C-----------------------
Q psy879 218 DEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----D----------------------- 269 (317)
Q Consensus 218 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----~----------------------- 269 (317)
+......++++++++..+|...++.++.+|+..|+++..|+..+.+.++.+ .
T Consensus 244 g~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~~L~~qA 323 (824)
T PRK07764 244 GVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLDRMRAQA 323 (824)
T ss_pred cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877765544332 0
Q ss_pred --CChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHH
Q psy879 270 --IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCI 308 (317)
Q Consensus 270 --~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~ 308 (317)
++.....++++.+.+....++.+.|++|.+|.|+.+++.
T Consensus 324 ~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 324 QRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 111123337889999988888888999999999999985
No 25
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-46 Score=347.70 Aligned_cols=307 Identities=22% Similarity=0.321 Sum_probs=272.6
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC--------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------- 60 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------- 60 (317)
+||||++|++++||+++++.|.+++.+++.+| |||+||+|+||||+++.+++.++|...
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i 87 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDI 87 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHH
Confidence 79999999999999999999999999999999 899999999999999999999987421
Q ss_pred ----CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 61 ----KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 61 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
...++++++.+..+++++++.+......+. .++++|+||||+|.|+...+|+|++++|+|++++.||++|+++
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~---~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPV---QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcc---cCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 124667777777889999998887665552 3789999999999999999999999999999999999999999
Q ss_pred CcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh-hCCCcccHHHHHh
Q psy879 137 EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH-NGFGHVTAEYVFK 215 (317)
Q Consensus 137 ~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~-~~~~~i~~~~v~~ 215 (317)
.+++++++|||..++|++++.+++..||..++.++|+.++++++..++..++||+|.++++++++. .+.+.|+.++|.+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V~~ 244 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQ 244 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997644 3667899999999
Q ss_pred hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------C
Q psy879 216 VCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--------------------------D 269 (317)
Q Consensus 216 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--------------------------~ 269 (317)
+++....+.++++++++..++...++.++++|...|+++..|+..+...++.+ .
T Consensus 245 ~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 324 (618)
T PRK14951 245 MLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVARLAAL 324 (618)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988875544322 1
Q ss_pred CChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 270 IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
++......+++.+......+....++++++|+.+.+++....
T Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~~~ 366 (618)
T PRK14951 325 MPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKP 366 (618)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCC
Confidence 122223348888999999999989999999999999986554
No 26
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.5e-46 Score=349.39 Aligned_cols=308 Identities=25% Similarity=0.364 Sum_probs=270.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC----------------CCce
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF----------------KDAV 64 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~----------------~~~~ 64 (317)
+||||++|++++||+++++.|..++.+|+++| |||+||+|+|||++|+++|+.+.|... ...+
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv 89 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI 89 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE
Confidence 69999999999999999999999999999999 899999999999999999999987532 1234
Q ss_pred EEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHh
Q psy879 65 LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQ 144 (317)
Q Consensus 65 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (317)
+++++....+.+++++.+..+...+. .++++|+||||+|.|+.+++++|+++||+||++++||++|+.+++++++|+
T Consensus 90 ieidaasn~~vd~IReLie~~~~~P~---~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 90 IEMDAASNNGVDEIRELIENVKNLPT---QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred EEEeccccCCHHHHHHHHHHHHhchh---cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH
Confidence 45555455678889988877766553 378999999999999999999999999999999999999999999999999
Q ss_pred hhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCCCHH
Q psy879 145 SRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEPHPL 223 (317)
Q Consensus 145 sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~~~~ 223 (317)
|||+.++|.+++.+++..||..++.++|+.++++++..++..++|++|.|+++++..+. +.+.|+.++|.++++....+
T Consensus 167 SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~ellg~~~~e 246 (725)
T PRK07133 167 SRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLVSNE 246 (725)
T ss_pred hhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999997543 45569999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------CCChHHHHHHHH
Q psy879 224 AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----------------------DIPEPLKLSIIQ 280 (317)
Q Consensus 224 ~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 280 (317)
.++.+++++..++...++.++.++...|.+|..++..+...++.+ .++.....++++
T Consensus 247 ~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~~~s~~~l~~~le 326 (725)
T PRK07133 247 NLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKIDDDFAYKFIE 326 (725)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999998888764433221 112223445789
Q ss_pred HHHHHHhHHhcCCCcHHHHHHHHHHHHHhhcc
Q psy879 281 EIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 281 ~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~~ 312 (317)
.+.+...+++.++|+++++|.++.+++.....
T Consensus 327 ~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~~ 358 (725)
T PRK07133 327 ILFDLLKDLKISDNPNDTLEILIIKLLALSEL 358 (725)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999976543
No 27
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.3e-46 Score=345.62 Aligned_cols=306 Identities=20% Similarity=0.291 Sum_probs=269.5
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++++|+++| ||||||+|+|||++|+++++.+.|... .
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCC
Confidence 69999999999999999999999999999999 999999999999999999999987421 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++....+.+++++........+. .++++|+||||++.|+.+++++|++++|+||++++||++++.+.++.+
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~---~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPA---SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchh---cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 23455655545677888877665554442 378999999999999999999999999999999999999999899999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|.+++.+++..|+..++..+|+.++++++..++..++||+|.+++++++++. ..+.++.+++.++++..
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~llg~~ 244 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLT 244 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999987544 45679999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----C--------------------CChHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----D--------------------IPEPLK 275 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----~--------------------~~~~~~ 275 (317)
..+.++++++++..++..+++.++.+++..|+++..++..+.++++.+ + ++....
T Consensus 245 ~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~~~s~~~L 324 (563)
T PRK06647 245 GDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLREFDLSQI 324 (563)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999988875544333 2 222234
Q ss_pred HHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 276 LSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 276 ~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
.++++.+.+.+.+++.+.|+++.+|.++.++|...
T Consensus 325 ~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~ 359 (563)
T PRK06647 325 ERAISVLLETYRDLQFSVNPRYELEINFSKILRLK 359 (563)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 45899999999999999999999999999999754
No 28
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.5e-46 Score=346.34 Aligned_cols=307 Identities=23% Similarity=0.304 Sum_probs=267.4
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|...+.+|+++| |||+||+|+||||+|+.+++.+.|... .
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCC
Confidence 69999999999999999999999999999999 899999999999999999999988421 0
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+++++++.+..+...+. .++++|+||||+|.|+..++|+|+++||+|+++++||++|+++.++++
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~---~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPA---RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhh---cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 13466676656788899988877665542 378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|++++.+++..+|..++..+++.++++++..++..++||+|.++++++.+.. +.+.|+.+++..+++..
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~lg~~ 244 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTL 244 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999976443 56789999999998887
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------CCChHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--------------------------DIPEPL 274 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--------------------------~~~~~~ 274 (317)
..+.+.++++++..++...++.++..|...|.++..++..+...++.+ .++...
T Consensus 245 d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la~~~s~~~ 324 (647)
T PRK07994 245 DDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELARTLPPED 324 (647)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHHHhCCHHH
Confidence 777899999999999999999999999999999987776653322211 122222
Q ss_pred HHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 275 KLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 275 ~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
...+++.+.+...+|+.+.|+++++|+++.++..-..
T Consensus 325 l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~~P 361 (647)
T PRK07994 325 VQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHP 361 (647)
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhcCC
Confidence 3347899999999999999999999999999987655
No 29
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.1e-46 Score=341.24 Aligned_cols=307 Identities=23% Similarity=0.316 Sum_probs=270.8
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++.+++++| |||+||+|+|||++|+.+++.+.|... .
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 79999999999999999999999999999998 899999999999999999999987532 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..+++++.....+++.+++.+......+. .++++|+||||+|.|+...+++|+++||+++++++||++|+++.++++
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~---~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPT---AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhh---hCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 13456776667888889888876544442 267899999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+++|||..++|++++.+++..||..++.++|+.++++++..|++.++||+|.++++|+.+.. +.+.|+.++|..+++..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999987554 56789999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------------CCChHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-------------------------DIPEPLK 275 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------------------------~~~~~~~ 275 (317)
....++++++++..++...++.++++|...|.++..++..+..+++.+ .++....
T Consensus 245 d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 324 (709)
T PRK08691 245 DKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTISGEQI 324 (709)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999888865544332 1222223
Q ss_pred HHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 276 LSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 276 ~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
..+++.+......++...++++++|+.+++++....
T Consensus 325 ~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~~p 360 (709)
T PRK08691 325 QLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAP 360 (709)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC
Confidence 348899999999999999999999999999987544
No 30
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-45 Score=339.13 Aligned_cols=306 Identities=22% Similarity=0.304 Sum_probs=265.4
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF------------------- 60 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~------------------- 60 (317)
.+||||++|++++||+++++.|..++.+++.+| |||+||+|+|||++|+.+|+.+.|...
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGM 86 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCC
Confidence 379999999999999999999999999999776 999999999999999999999987421
Q ss_pred CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 61 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
...++++++....++++++.....+...+. .+.++||||||+|.|+.+.+++|+++||+++.+++||++|+.+.++.
T Consensus 87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~---~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPM---EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEecccccCHHHHHHHHHHHHhhhh---cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 123566766666788888876665554442 36789999999999999999999999999999999999999999999
Q ss_pred hhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCC
Q psy879 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 141 ~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~ 219 (317)
++|+|||+.++|++++.+++..+|..++.++++.+++++++.++..++||+|.++++|++++. +.+.|+.++|.++++.
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~lg~ 243 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGL 243 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999986543 5568999999999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------C-----------------------C
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------D-----------------------I 270 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------~-----------------------~ 270 (317)
...+.++++++++..++...++.++..|++.|+++..++..+...++.+ + +
T Consensus 244 ~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~~~A~~~ 323 (624)
T PRK14959 244 AGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWLGWAKRF 323 (624)
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999988887764433222 1 1
Q ss_pred ChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
+......+++.+.+...+++.++|+++++|.++.+++..
T Consensus 324 s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~ 362 (624)
T PRK14959 324 EPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAML 362 (624)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 111223368889999999999999999999999999864
No 31
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.6e-45 Score=333.95 Aligned_cols=306 Identities=26% Similarity=0.374 Sum_probs=268.7
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++||+++.+.|.+++.+++++| ||||||+|+|||++|+.+|+.+.|....
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~ 87 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSF 87 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCC
Confidence 69999999999999999999999999999999 8999999999999999999999863211
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++....+.++++.........+. .+.++|+||||+|.|+.+++++|++++++|++++++|++|+..+++++
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~---~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~ 164 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPI---KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPP 164 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCcc---cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHH
Confidence 13455665556788888877666655543 378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+++|||+.++|++++.+++..|+..+++.+|+.+++++++.++..++||+|.++++|+.++. +.+.|+.++|.++++..
T Consensus 165 tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~ 244 (486)
T PRK14953 165 TILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIV 244 (486)
T ss_pred HHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999987644 56689999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------C----------------CChHHHHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------D----------------IPEPLKLSI 278 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------~----------------~~~~~~~~~ 278 (317)
....++++++++..++...++.++.+|...|+++..++..+.+.++.+ + .+......+
T Consensus 245 ~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (486)
T PRK14953 245 SQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRKLEKPLEALLYL 324 (486)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999999999999998876654432 1 112233447
Q ss_pred HHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 279 IQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 279 ~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
++.+.+...+++. .|+++++|.++.++|....
T Consensus 325 ~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~~~ 356 (486)
T PRK14953 325 EDVINKAFSEART-RDPLRAYELAILKLLYVKD 356 (486)
T ss_pred HHHHHHHHHHHhc-cChhHHHHHHHHHHHhhCC
Confidence 8899999999999 9999999999999996543
No 32
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-45 Score=333.40 Aligned_cols=305 Identities=26% Similarity=0.369 Sum_probs=270.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++.+.|..++.+++++| ++|+||||+||||+|+++++.+.|... .
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTF 85 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCC
Confidence 69999999999999999999999999999988 899999999999999999999876431 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++....+.+.+++........+. .++++|+||||+|.++.+.+++|+++++++++++++|++|+++.++.+
T Consensus 86 ~dv~el~aa~~~gid~iR~i~~~~~~~p~---~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~ 162 (472)
T PRK14962 86 MDVIELDAASNRGIDEIRKIRDAVGYRPM---EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPP 162 (472)
T ss_pred CccEEEeCcccCCHHHHHHHHHHHhhChh---cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhH
Confidence 24677777767788888876655544432 368899999999999999999999999999999999999998889999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+++|||+.+.|.+++.+++..++..++..+++.+++++++.++..++||+|.+++.|+.++. ..+.|+.++|.++++..
T Consensus 163 ~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~ 242 (472)
T PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLI 242 (472)
T ss_pred HHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999998654 33469999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCh-HHHHHHHHHHHHHHhHHhcCCCcHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPE-PLKLSIIQEIGNVHLRISEGVNSLLQ 298 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~l~~g~~~~l~ 298 (317)
..+.++++++++.++|..+|+.++.+|+..|++|..|++.+...+ +.++..+ .....+...+.+.-.+++..-...+.
T Consensus 243 ~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l 322 (472)
T PRK14962 243 PIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLV 322 (472)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 999999999999999999999999999999999999999987765 4446666 56667788888888888887789999
Q ss_pred HHHHHHHHHHh
Q psy879 299 LSGLLARLCIV 309 (317)
Q Consensus 299 le~~~~~~~~~ 309 (317)
.+.++.++|.-
T Consensus 323 ~~~~~~~~~~~ 333 (472)
T PRK14962 323 CKLGSASIATR 333 (472)
T ss_pred HHHHHHHHHHh
Confidence 99999999853
No 33
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-46 Score=335.70 Aligned_cols=306 Identities=28% Similarity=0.414 Sum_probs=273.2
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
.||||++|++++||+++.+.|..++..++.+| |+|+||.|+||||+||.+|+.++|... .
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCc
Confidence 58999999999999999999999999999999 999999999999999999999998752 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+++++|+........| ..+++||+||||++.|+..+.|+||+++|+||+++.|||+|+.+.++++
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P---~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAP---SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCC---ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 2356666667789999999888776665 3489999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|.|||+.++|+.++.+++...|..++.++++.++++++..+++.++|++|.++++|+.+.. +.+.|+.+.|...++..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~ 244 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLT 244 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999987665 45789999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----C----------------------CChH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----D----------------------IPEP 273 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----~----------------------~~~~ 273 (317)
....+..+++++..+|...++..++.+++.|.++..++..+..+++.+ . ++..
T Consensus 245 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 324 (515)
T COG2812 245 DIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELASQISVL 324 (515)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999998887764433221 0 1111
Q ss_pred HHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 274 LKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 274 ~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
...++++.+......++.+.++++.+|+++.+++...
T Consensus 325 ~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~ 361 (515)
T COG2812 325 NLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAA 361 (515)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhc
Confidence 2333778888888899999999999999999999764
No 34
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.6e-45 Score=334.19 Aligned_cols=307 Identities=22% Similarity=0.289 Sum_probs=268.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++++|+.+| |+|+||+|+|||++|+.+|+.+.|... .
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~ 87 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSF 87 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCC
Confidence 79999999999999999999999999999999 999999999999999999999987321 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..+++++.....+.+++++.+..+...+. .++++|+||||+|.|+.+++++|+++||+||+++.||++|++..++++
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~---~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~ 164 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPS---QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPV 164 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhh---cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhh
Confidence 23555665556788888888877665543 378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|.+++.+++..+|..+++++|+.++++++..++..++||+|.+++.++.++. ..+.|+.++|+++++..
T Consensus 165 tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l~~~ 244 (546)
T PRK14957 165 TILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGII 244 (546)
T ss_pred hHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999997654 34789999999999998
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH----HHH--Hhc-------------------CCChHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF----RVA--KTL-------------------DIPEPLK 275 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~----~~~--~~~-------------------~~~~~~~ 275 (317)
..+.++++++++..++...++.++..+...|.+...++..+. +.+ +.. .++....
T Consensus 245 ~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a~~~s~~~l 324 (546)
T PRK14957 245 DSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILAKISIEQA 324 (546)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhCCHHHH
Confidence 888899999999999999999999999999999888876654 211 100 2233334
Q ss_pred HHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 276 LSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 276 ~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
..+++.+.+...+|+.+.|+++++|+.+.+++.-.+
T Consensus 325 ~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~~p 360 (546)
T PRK14957 325 HFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQK 360 (546)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999999999997654
No 35
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=3.9e-45 Score=326.61 Aligned_cols=304 Identities=26% Similarity=0.413 Sum_probs=264.9
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF------------------- 60 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~------------------- 60 (317)
.+||||++|++++||+++++.|..++.+|+++| ++||||||+|||++++.+++.+.|...
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 84 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGS 84 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 479999999999999999999999999999998 999999999999999999999976532
Q ss_pred CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 61 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
...++++++....+.+.+++.+......+. .++++||||||+|.++...+++|+++++++++++.+|++++++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~---~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 85 SLDVIEIDAASNNGVDDIREILDNVKYAPS---SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIP 161 (355)
T ss_pred CCCEEEeeccccCCHHHHHHHHHHHhcCcc---cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHH
Confidence 123555665545566777777766554442 37889999999999999999999999999999999999999999999
Q ss_pred hhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCC
Q psy879 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 141 ~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~ 219 (317)
++++|||..++|++++++++..|+..+++++|+.++++++..++..++||+|.+++.+++... ..+.|+.++|.+++..
T Consensus 162 ~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~ 241 (355)
T TIGR02397 162 ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLGL 241 (355)
T ss_pred HHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999988655 4456999999999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------C--------------------CChH
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------D--------------------IPEP 273 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------~--------------------~~~~ 273 (317)
..+..++++++++..++..+++.++.++...|++|..++..+.++++.+ + ++..
T Consensus 242 ~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~~~s~~ 321 (355)
T TIGR02397 242 VDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALKLSLE 321 (355)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999988876544332 1 1111
Q ss_pred HHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHH
Q psy879 274 LKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLC 307 (317)
Q Consensus 274 ~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~ 307 (317)
....+++.+.+++.++++|.|+++.+|.|+.++|
T Consensus 322 ~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 322 FLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 2233799999999999999999999999999987
No 36
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.3e-45 Score=336.48 Aligned_cols=307 Identities=21% Similarity=0.275 Sum_probs=268.7
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------K 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~ 61 (317)
+||||++|++++||+++++.|..++.+++++| |||+||+|+||||+|+.+++.+.|... .
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 79999999999999999999999999999999 899999999999999999999987431 1
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++....+.+++++.+......+ ..++++|+||||+|.|+.+++|+|++++|+|+++++||++|+++.++++
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p---~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~ 164 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAP---TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCc---ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence 1345566655678889998887765554 2378999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+|+|||+.++|++++.+++..++..+++++|+.++++++..++..++||+|.++++++.+.. +.+.|+.++|..+++..
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~~~~~ 244 (527)
T PRK14969 165 TVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAI 244 (527)
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999986544 67789999999999988
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------------CCChHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-------------------------DIPEPLK 275 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------------------------~~~~~~~ 275 (317)
..+.++++++++..++...++.++.+|...|+++..++..+..+++.+ .++....
T Consensus 245 ~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~l 324 (527)
T PRK14969 245 DQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRLSPEDI 324 (527)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHHcCCHHHH
Confidence 888899999999999999999999999999999988887753332221 1222334
Q ss_pred HHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 276 LSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 276 ~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
..+++.+.+....++...++++++|+++.+++.-.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~ 360 (527)
T PRK14969 325 QLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRP 360 (527)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCC
Confidence 448999999999999999999999999999986554
No 37
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-44 Score=322.43 Aligned_cols=305 Identities=26% Similarity=0.371 Sum_probs=266.4
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC-------CCCceEEecCCCCc
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPS-------FKDAVLELNASNDR 73 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~-------~~~~~~~~~~~~~~ 73 (317)
+||||++|++++||+.+++.+...+++|+++| ++||||||+|||++++++++.+.+.. ....+++++.....
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNN 88 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC
Confidence 79999999999999999999999999999886 99999999999999999999987632 23445666665556
Q ss_pred ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeec
Q psy879 74 GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYN 153 (317)
Q Consensus 74 ~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~ 153 (317)
+.+++++.+..+...+. .+++++|+|||+|.++...++.|++++++++.++++|++++...++.++++|||..++|+
T Consensus 89 ~~~~i~~l~~~~~~~p~---~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~ 165 (367)
T PRK14970 89 SVDDIRNLIDQVRIPPQ---TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFK 165 (367)
T ss_pred CHHHHHHHHHHHhhccc---cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecC
Confidence 67788877766544442 367899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCCCHHHHHHHHHHH
Q psy879 154 KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEPHPLAVKEMLLNC 232 (317)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~~~~~i~~l~~~~ 232 (317)
+++++++..|+..++.++|+.+++++++.++..++||+|.+++++++.+. ..+.|+.+++..++....++.++++++++
T Consensus 166 ~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai 245 (367)
T PRK14970 166 RITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLI 245 (367)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 23349999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------------CCChHHHHHHHHHHHHH
Q psy879 233 VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---------------------------DIPEPLKLSIIQEIGNV 285 (317)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~ 285 (317)
..++..+++.+++++...|++|..|+..+.++++.+ .++.....++++.+.++
T Consensus 246 ~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~ 325 (367)
T PRK14970 246 LENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVSQSFLLSGIDIANDC 325 (367)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875554333 11222233489999999
Q ss_pred HhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 286 HLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 286 ~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
|.+++++.|+++.+|.++.++|..
T Consensus 326 d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 326 DLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred HHHHhcCCChhHHHHHHHHHHhhc
Confidence 999999999999999999999864
No 38
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-44 Score=338.18 Aligned_cols=306 Identities=23% Similarity=0.319 Sum_probs=269.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++||+++++.|..++.+|+.+| |||+||+|+|||++++.+++.+.|....
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 79999999999999999999999999999988 8999999999999999999999864321
Q ss_pred -CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 62 -DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 62 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
..+++++.....+.+++++.+......+. .++++||||||+|.|+.+.++.|++++|+++.+++||++++..+++.
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~---~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPA---LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcc---cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 23455666556778888887766555443 36899999999999999999999999999999999999999999999
Q ss_pred hhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCC
Q psy879 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 141 ~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~ 219 (317)
++++|||+.+.|.+++..++..++..++.++|+.++++++..++..++||+|.+++.|++.+. ..+.|+.++|..++..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~ 244 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGI 244 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999998655 4568999999999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----C----------------------CCh
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----D----------------------IPE 272 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----~----------------------~~~ 272 (317)
+.+..++++++++..+|..+++.++++|...|.++..++..+.+.++.+ + ++.
T Consensus 245 s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~~~s~ 324 (585)
T PRK14950 245 SGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQIANL 324 (585)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999999999999999988765543322 1 222
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 273 PLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 273 ~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
....++++.+.++|+.+|+|.++++.+|.+++++|...
T Consensus 325 ~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~~ 362 (585)
T PRK14950 325 EALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLVP 362 (585)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCC
Confidence 33445899999999999999988999999999999643
No 39
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=4.5e-44 Score=317.70 Aligned_cols=303 Identities=33% Similarity=0.547 Sum_probs=262.1
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc-------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR------- 73 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~------- 73 (317)
++||||++|++++|++++++.|..++..+..||++|+||||+|||++++++++.+.+..+...+..+++++..
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhh
Confidence 4799999999999999999999999999998999999999999999999999998766544445555553210
Q ss_pred -------------------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEec
Q psy879 74 -------------------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 134 (317)
Q Consensus 74 -------------------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~ 134 (317)
..+.+++.+....... ...+++++|||||++.+..+.++.|+++++++++++.+|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYR--PLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcC--CCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 1122222222222211 1125678999999999999999999999999988899999999
Q ss_pred CCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHH
Q psy879 135 NSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVF 214 (317)
Q Consensus 135 ~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~ 214 (317)
.+.++.++++|||..+.|.+++.+++..++..++.++|+.+++++++.++..++||+|.+++.++.++...+.|+.+++.
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~v~ 243 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITMEAAY 243 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999887766789999999
Q ss_pred hhcCC-CCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcC
Q psy879 215 KVCDE-PHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292 (317)
Q Consensus 215 ~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g 292 (317)
+++.. ..+..++++++++..++..+++.++++|+ ..|+++..|+..+.+.+.. ..+.....++++++.++|+++|+|
T Consensus 244 ~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~l~~~d~~lk~g 322 (337)
T PRK12402 244 EALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARS-RYRGDNLARLHRLAADADARLTDG 322 (337)
T ss_pred HHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99887 66889999999999999999999999996 7999999999998765544 388888999999999999999999
Q ss_pred CCcHHHHHHHHHHH
Q psy879 293 VNSLLQLSGLLARL 306 (317)
Q Consensus 293 ~~~~l~le~~~~~~ 306 (317)
.++.++||.|+.++
T Consensus 323 ~~~~~~le~~i~~~ 336 (337)
T PRK12402 323 ANDRIQLEALLAEL 336 (337)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999999876
No 40
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7e-44 Score=325.64 Aligned_cols=308 Identities=23% Similarity=0.325 Sum_probs=263.7
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++||+++++.|..++.+|+++| |||+||+|+|||++|+.+|+.+.|..+.
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence 79999999999999999999999999999998 9999999999999999999999875432
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++++++.+..+.+++++.+..+...+.. ++++|+||||+|.|+.+++++|+++||+||+++++|++|+.+.++++
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~---~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTT---FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhh---CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 234566665567888899888776655533 67899999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
+++|||+.++|++++++++..|+..++.++|+.++++++..++..++||+|.+++.++.+.. ....|+.++|.++++..
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ellg~~ 244 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLV 244 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999998655 33459999999998888
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----C--------CChHHHHH----------
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----D--------IPEPLKLS---------- 277 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----~--------~~~~~~~~---------- 277 (317)
....++++++++..++...++.++.+|+..|++|..++..+...++.+ + .+......
T Consensus 245 ~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 324 (605)
T PRK05896 245 DNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQKLLS 324 (605)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcCChhhhhcCCHHHHHHHHHHHHHHhh
Confidence 888899999999999999999999999999999999998875544332 1 12211110
Q ss_pred -------HHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhcc
Q psy879 278 -------IIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 278 -------~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~~ 312 (317)
....+.++-..++..+++...+|.-+.++.+..+-
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (605)
T PRK05896 325 IEFNTNFLLNNFVSLINRLKASVNQVFEFEIYLYKIINANPD 366 (605)
T ss_pred hhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcc
Confidence 34455577778888889999998888888765543
No 41
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-43 Score=329.99 Aligned_cols=305 Identities=24% Similarity=0.342 Sum_probs=267.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++||+++++.|..++..++.+| |||+||+|+|||++|+++|+.+.|....
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAG 87 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcC
Confidence 69999999999999999999999999998765 9999999999999999999999874311
Q ss_pred --CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 62 --DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 62 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
..+++++.....+++.+++.+......+. .++++|+||||+|.|+.+++++|+++||+|+.+++||++|+++.++
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~---~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPV---QARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChh---cCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 13455665556788899998877655543 3688999999999999999999999999999999999999999999
Q ss_pred chhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCC
Q psy879 140 IEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDE 219 (317)
Q Consensus 140 ~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~ 219 (317)
.++|+|||+.++|++++.+++..++..++.++++.++++++..++..++||+|.++++++......+.|+.++|.++++.
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~lvg~ 244 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDLLGA 244 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999987665668999999999998
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----C-----------------------CC
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-----D-----------------------IP 271 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----~-----------------------~~ 271 (317)
..+..++++++++..++...++.++.+|++.|.++..++..+.++++.+ + ++
T Consensus 245 ~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~A~~~s 324 (620)
T PRK14948 245 VPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKLAKQIN 324 (620)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHHHhhCC
Confidence 8888899999999999999999999999999999998887765543322 1 11
Q ss_pred hHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 272 EPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 272 ~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
.....++++.+.+++..++++.|+++.+|.++.+++..
T Consensus 325 ~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~ 362 (620)
T PRK14948 325 LERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS 362 (620)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhcc
Confidence 11233378889999999999999999999999999864
No 42
>KOG2035|consensus
Probab=100.00 E-value=1e-41 Score=276.08 Aligned_cols=310 Identities=27% Similarity=0.454 Sum_probs=253.3
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
++||||++|+.+.++++....+......+.+||+++|||+|+||.|.+.++.++++|.+..
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEi 83 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEI 83 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEE
Confidence 5899999999999999999999999888999999999999999999999999999874421
Q ss_pred -----CceEEecCCCCcC--hHHHHHHHHHHHhhcccCC--CCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEE
Q psy879 62 -----DAVLELNASNDRG--IDTVRNKIKMFAQQKVTLP--PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALA 132 (317)
Q Consensus 62 -----~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~ 132 (317)
...+++++++... -..+.+.++.++++..... ....+||+|.|+|.|+.++|.+|.+.||.+..++++|++
T Consensus 84 stvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~ 163 (351)
T KOG2035|consen 84 STVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILV 163 (351)
T ss_pred EEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEE
Confidence 1245666665332 2456778888887754322 247899999999999999999999999999999999999
Q ss_pred ecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHH
Q psy879 133 CNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEY 212 (317)
Q Consensus 133 ~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~ 212 (317)
+|...++.++|+|||..++.+.|+++++..++...++++|+.++.+.+..+++.++||+|+|+-.++.+......-+...
T Consensus 164 cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~ 243 (351)
T KOG2035|consen 164 CNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANS 243 (351)
T ss_pred ecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765432222210
Q ss_pred HHhhcCCCCHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhH
Q psy879 213 VFKVCDEPHPLAVKEMLLNC----VEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLR 288 (317)
Q Consensus 213 v~~~~~~~~~~~i~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (317)
.......=+..+.++...+ ......+.+..+++|+..+++|..|+..+.+.+-. +.+...+..++++.+.+++|
T Consensus 244 -~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~-~~d~~~k~~~~~~Aa~yEhR 321 (351)
T KOG2035|consen 244 -QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL-KCDTQLKLEVIQHAAKYEHR 321 (351)
T ss_pred -CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHH
Confidence 0000111111233333333 33345667788999999999999999987654332 78888999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHhhcc
Q psy879 289 ISEGVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 289 l~~g~~~~l~le~~~~~~~~~~~~ 312 (317)
+..|....+|||.|+++++.+-.+
T Consensus 322 l~lG~KaIfHLEaFVA~fM~iy~~ 345 (351)
T KOG2035|consen 322 LRLGQKAIFHLEAFVAKFMCIYKK 345 (351)
T ss_pred HhhcchhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999877554
No 43
>PRK04132 replication factor C small subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=302.05 Aligned_cols=276 Identities=42% Similarity=0.685 Sum_probs=253.5
Q ss_pred EEEEC--CCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH
Q psy879 34 IIISG--PPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 111 (317)
Q Consensus 34 ~ll~G--~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 111 (317)
.+..| |++.||||+|+++|+.+.+..++..++++|+++.++.+.+++.+..+...... ..++++|+||||+|.|+.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~-~~~~~KVvIIDEaD~Lt~~ 645 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPI-GGASFKIIFLDEADALTQD 645 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc-CCCCCEEEEEECcccCCHH
Confidence 56678 88889999999999999887777889999999889999999999877654321 1235799999999999999
Q ss_pred HHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Q psy879 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDM 191 (317)
Q Consensus 112 ~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~ 191 (317)
+|++|+++||+|+.++.||++||++.++.++|+|||+.++|++++.+++..+|..++.++|+.++++++..++..++||+
T Consensus 646 AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 646 AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM 725 (846)
T ss_pred HHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCC
Q psy879 192 RQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDI 270 (317)
Q Consensus 192 r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~ 270 (317)
|.|++.|+.++...+.|+.+++..+.....++.++++++.+...+..+++..+++++ ..|+++.+++..+++.+....+
T Consensus 726 R~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i 805 (846)
T PRK04132 726 RRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPI 805 (846)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 999999998877667899999999999988889999999999999999999999986 8999999999999988876678
Q ss_pred ChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 271 PEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
++..+.+++..+++++.++..|.|+.++|+.|++++|.+.
T Consensus 806 ~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~~ 845 (846)
T PRK04132 806 DEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLMG 845 (846)
T ss_pred CHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhhc
Confidence 8889999999999999999999999999999999998653
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-38 Score=268.47 Aligned_cols=293 Identities=21% Similarity=0.306 Sum_probs=237.6
Q ss_pred cccCCCCCCcccCCHHHHH---HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVE---RLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
++.||++|++++||++++. .|..++++|.+++++|||||||||||+|+.+++.. +..+..+++. ..+..++
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv-~~gvkdl 89 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAV-TSGVKDL 89 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-----CCceEEeccc-cccHHHH
Confidence 5789999999999999985 59999999999999999999999999999999985 4457888876 4678889
Q ss_pred HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEec--CCCcCchhHhhhcceeeecCCC
Q psy879 79 RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN--NSEKIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~--~~~~l~~~i~sR~~~i~f~~~~ 156 (317)
++.+....+... .++..|+||||++++++..|++|+..+|+ +.+.+|.+|+ +...+.++|+|||+++.|.|++
T Consensus 90 r~i~e~a~~~~~---~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~ 164 (436)
T COG2256 90 REIIEEARKNRL---LGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLSRARVFELKPLS 164 (436)
T ss_pred HHHHHHHHHHHh---cCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHhhhhheeeeecCC
Confidence 988887755542 26789999999999999999999999995 5566676543 3468999999999999999999
Q ss_pred HHHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHhhhC---CCcccHHHHHhhcC--------
Q psy879 157 DAQLLSKVIEICE--KENIS-----HTNDGLEAIVFTAQGDMRQALNNLQSTHNG---FGHVTAEYVFKVCD-------- 218 (317)
Q Consensus 157 ~~~~~~~l~~~~~--~~~~~-----i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~---~~~i~~~~v~~~~~-------- 218 (317)
.+++...|.+.+. .+|+. +++++.+.++..++||.|.++|.|+.++.. ...++.+.+.+++.
T Consensus 165 ~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk 244 (436)
T COG2256 165 SEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDK 244 (436)
T ss_pred HHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCC
Confidence 9999999998443 34554 789999999999999999999999987652 22334666665442
Q ss_pred --CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhHHhcCC-C
Q psy879 219 --EPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRISEGV-N 294 (317)
Q Consensus 219 --~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~ 294 (317)
..+++.++.+.++++..|.+.|+.|+..|++.|++|..|.+.+.+++ +.+|+.+.....+-....+. --.-|. .
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da--~~~lG~PE 322 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDA--VERLGSPE 322 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHH--HHHhCCch
Confidence 45678899999999999999999999999999999999999998876 44577665544433333333 223455 7
Q ss_pred cHHHHHHHHHHHH
Q psy879 295 SLLQLSGLLARLC 307 (317)
Q Consensus 295 ~~l~le~~~~~~~ 307 (317)
.++.|-..+.-+|
T Consensus 323 ~~i~LAqavvyLA 335 (436)
T COG2256 323 ARIALAQAVVYLA 335 (436)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888887777
No 45
>KOG0990|consensus
Probab=100.00 E-value=4.9e-39 Score=265.90 Aligned_cols=309 Identities=33% Similarity=0.456 Sum_probs=272.1
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC-CCCCCceEEecCCCCcChHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG-PSFKDAVLELNASNDRGIDTVR 79 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~i~ 79 (317)
++||||..++++++|++++..+.++...++.||+|||||||+|||+...+.++.+++ ...+..+.++|.+++++++.++
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr 111 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVR 111 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchH
Confidence 589999999999999999999999999999999999999999999999999999998 4556668899999999999999
Q ss_pred HHHHHHHhhcc-cCC--CCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCC
Q psy879 80 NKIKMFAQQKV-TLP--PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 80 ~~~~~~~~~~~-~~~--~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~ 156 (317)
+.+..+..+.. ... ....+.+|+||+|.|+.++|++|.+.+|.+..+++|++++|.+.++.++++|||..++|.|++
T Consensus 112 ~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~ 191 (360)
T KOG0990|consen 112 QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRCTRFRFAPLT 191 (360)
T ss_pred HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcccccCCCCCCC
Confidence 88877766542 111 247899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCc-----ccHHHHHhhcCCCCHHHHHHHHHH
Q psy879 157 DAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVKEMLLN 231 (317)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~-----i~~~~v~~~~~~~~~~~i~~l~~~ 231 (317)
..+...++.+++..+...++++....++..+.||+|.++|.|+..+..... +..+.+..+.+......+..+++.
T Consensus 192 ~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~ 271 (360)
T KOG0990|consen 192 MAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEK 271 (360)
T ss_pred hhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHHH
Confidence 999999999999999999999999999999999999999999987663333 455568999988888899999999
Q ss_pred HhcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 232 CVEGNMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 232 ~~~~~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
+.+.++.+++.-+..+ ...|..-.+++..+...+.........+..++..+++.++++..|++..+++..++..+...
T Consensus 272 il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~~~~ 350 (360)
T KOG0990|consen 272 RMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCMQKEQLKAIIKNFAAE 350 (360)
T ss_pred HhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 9999887777777777 45677888888887665554455557788899999999999999999999999999988643
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=5.7e-37 Score=269.51 Aligned_cols=293 Identities=27% Similarity=0.393 Sum_probs=241.6
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR 79 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~ 79 (317)
++||||++|++++||+++.+.+..++++|+.|| ++|+||||+|||++++++++.+. ..+.++++.. ...+.++
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~~~-~~~~~i~ 85 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNGSD-CRIDFVR 85 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEeccCc-ccHHHHH
Confidence 489999999999999999999999999999988 66699999999999999999862 2356677765 3355566
Q ss_pred HHHHHHHhhcccCCCCceeEEEEeCCCCC-CHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHH
Q psy879 80 NKIKMFAQQKVTLPPGRHKIVILDEADSM-TDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDA 158 (317)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~vliiDE~d~l-~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~ 158 (317)
+.+..+..... ..+.+++|||||+|.+ ..+.++.|..++++++.++.+|+++|...++.++++|||..+.|+.|+.+
T Consensus 86 ~~l~~~~~~~~--~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~ 163 (316)
T PHA02544 86 NRLTRFASTVS--LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKE 163 (316)
T ss_pred HHHHHHHHhhc--ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHH
Confidence 65544433321 1146899999999999 67788889999999999999999999999999999999999999999998
Q ss_pred HHHHHH-------HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHH
Q psy879 159 QLLSKV-------IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231 (317)
Q Consensus 159 ~~~~~l-------~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~ 231 (317)
+...++ ..++.++|+.++++++..++..+.||+|.+++.++.++. ...++.+++.... ...+++++++
T Consensus 164 ~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~~~~l~~~~----~~~~~~l~~~ 238 (316)
T PHA02544 164 EQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKIDAGILSEVT----NSDIDDVVEA 238 (316)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCHHHHHHhh----HHHHHHHHHH
Confidence 877554 345566899999999999999999999999999997764 3578888877655 5578889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhh
Q psy879 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~ 310 (317)
+..++..++.. ... ..+.++..++..+++.+.. .+.+....++++.+.+.+..+..|.|+.+++|.+++++|..+
T Consensus 239 l~~~d~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~~~ 313 (316)
T PHA02544 239 LKAKDFKAVRA-LAP--NYANDYASFVGKLYDELYP-QVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLMLEC 313 (316)
T ss_pred HHcCCHHHHHH-HHH--HhccCHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 99888888777 322 3378888998887665443 456777889999999999999999999999999999998644
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.1e-36 Score=264.54 Aligned_cols=280 Identities=21% Similarity=0.306 Sum_probs=227.5
Q ss_pred CCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC---CceEEecC--CCCcChHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK---DAVLELNA--SNDRGIDTVRN 80 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~---~~~~~~~~--~~~~~~~~i~~ 80 (317)
++|++++||+++++.|..++++|+++| |+|+||+|+|||++|+.+++.+.|.... ..+..+.. ....+.+++++
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~ 80 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN 80 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH
Confidence 469999999999999999999999999 8999999999999999999999875422 12333333 34567889999
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHH
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~ 160 (317)
....+...+.. ++++|+|||++|.|+.+++|+|++++|+||+++.||++|+++++++++|+|||+.++|.+++++++
T Consensus 81 ~~~~~~~~p~~---~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 81 IIEEVNKKPYE---GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHHhcCccc---CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 88877666543 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHH
Q psy879 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240 (317)
Q Consensus 161 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~ 240 (317)
..|+...+. .++++.+..++..++|++..+...+.... ... ..+.++++++.+..++...+
T Consensus 158 ~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~-------~~~--------~~~~~~~~~~~l~~~~~~~~ 218 (313)
T PRK05564 158 EKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS-------LKN--------IRNMSLEILKDIKKSNINIL 218 (313)
T ss_pred HHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH-------HHH--------HHHHHHHHHHHHHcCCHHHH
Confidence 999987653 46788888999999999998886653210 100 12357788888888888888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------CCChHHHHHHHHHHHHHHhHHhcCCC
Q psy879 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTL--------------------------DIPEPLKLSIIQEIGNVHLRISEGVN 294 (317)
Q Consensus 241 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~l~~g~~ 294 (317)
+.++..+...+.++..++..+.++++.+ ..+.....++++.+.+++..+++|+|
T Consensus 219 l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~~~l~~n~n 298 (313)
T PRK05564 219 LKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSSNVN 298 (313)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888888888888877777655443222 12222344578999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy879 295 SLLQLSGLLARLCI 308 (317)
Q Consensus 295 ~~l~le~~~~~~~~ 308 (317)
+++.+|.++.++..
T Consensus 299 ~~l~le~lll~~~~ 312 (313)
T PRK05564 299 PTLVFDSMLIKMQE 312 (313)
T ss_pred ccHHHHHHHHhhhc
Confidence 99999999999864
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=266.21 Aligned_cols=293 Identities=26% Similarity=0.406 Sum_probs=232.9
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHh---cCC-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSS---SGN-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~---~~~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 76 (317)
+|||||++|++++||+++++.|..++. .|. .++++|+||||+|||++|+++++.+ +..++++++++....+
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r~~~ 79 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQRTAD 79 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEcccccccHH
Confidence 589999999999999999999998886 344 4469999999999999999999986 3457888888777777
Q ss_pred HHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH----HHHHHHHHHhhhccCCceEEEEecCCCcCch-hHhhhcceee
Q psy879 77 TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD----GAQQALRRTMEIYSNTTRFALACNNSEKIIE-PIQSRCAMLR 151 (317)
Q Consensus 77 ~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~----~~~~~ll~~le~~~~~~~~il~~~~~~~l~~-~i~sR~~~i~ 151 (317)
.++..+.......... ...+++|||||+|.++. ...++|+++++. ....+|+++|.+..+.+ ++++||..+.
T Consensus 80 ~i~~~i~~~~~~~sl~-~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~ 156 (482)
T PRK04195 80 VIERVAGEAATSGSLF-GARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIE 156 (482)
T ss_pred HHHHHHHHhhccCccc-CCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEE
Confidence 7777666555432211 13689999999999976 568899999984 44668889998887776 8999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHH
Q psy879 152 YNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231 (317)
Q Consensus 152 f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~ 231 (317)
|++++..++..+|..++..+|+.+++++++.++..++||+|.+++.|+.++.+.+.++.+++..+........+|+++..
T Consensus 157 f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~ 236 (482)
T PRK04195 157 FKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIFDALDA 236 (482)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997777788999999988877777789999998
Q ss_pred Hhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh---HHhcCCCcHHHHHHHHHHH
Q psy879 232 CVE-GNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHL---RISEGVNSLLQLSGLLARL 306 (317)
Q Consensus 232 ~~~-~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~l~~g~~~~l~le~~~~~~ 306 (317)
+.. ++...++..+.+ ..++|..++..+...+-..-.+.....++++++.+.|. ++..+.+ .+|..+.+.+
T Consensus 237 i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~~~~~~~~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~~~~~~ 310 (482)
T PRK04195 237 VFKARNADQALEASYD---VDEDPDDLIEWIDENIPKEYDDPEDIARAYDALSRADIFLGRVKRTQN--YDLWRYASDL 310 (482)
T ss_pred HHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHHHHHhcCC--cchHHHHHHH
Confidence 876 778777765543 56788888777655433211233556667777766554 4555555 4445544444
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=4.7e-34 Score=258.31 Aligned_cols=294 Identities=22% Similarity=0.339 Sum_probs=234.5
Q ss_pred CcccCCCCCCcccCCHHHHHH---HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT 77 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~---l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 77 (317)
.+||||++|++++||++++.. +..++.++..++++|+||||||||++|+.+++.+. ..+..+++.. .+...
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~~~l~a~~-~~~~~ 76 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD-----APFEALSAVT-SGVKD 76 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccc-ccHHH
Confidence 479999999999999999776 99999999988999999999999999999999863 3466666653 45666
Q ss_pred HHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC--CCcCchhHhhhcceeeecCC
Q psy879 78 VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN--SEKIIEPIQSRCAMLRYNKL 155 (317)
Q Consensus 78 i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~--~~~l~~~i~sR~~~i~f~~~ 155 (317)
+++.+....... ..+.+.+++|||+|.++...++.|++.+++ ....+|.+++. ...+.++++|||..+.|+++
T Consensus 77 ir~ii~~~~~~~---~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~SR~~~~~~~~l 151 (413)
T PRK13342 77 LREVIEEARQRR---SAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLSRAQVFELKPL 151 (413)
T ss_pred HHHHHHHHHHhh---hcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhccceeeEeCCC
Confidence 776666554332 125788999999999999999999999986 44555555432 35789999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCC----------CCH
Q psy879 156 TDAQLLSKVIEICEKE--NI-SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDE----------PHP 222 (317)
Q Consensus 156 ~~~~~~~~l~~~~~~~--~~-~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~----------~~~ 222 (317)
+.+++..++...+... ++ .+++++++.++..++||+|.+++.++.++.....|+.+++..++.. ...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Confidence 9999999999987653 44 7899999999999999999999999987665667999999887653 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhHHhcCC-CcHHHHH
Q psy879 223 LAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRISEGV-NSLLQLS 300 (317)
Q Consensus 223 ~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~~~l~le 300 (317)
+.+..+.+++...|.+.++.|+..|+..|++|..|.+.+...+ +..|+.+.....+.....+.-.. -|. ..++.|-
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~--~g~pe~~~~l~ 309 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVER--IGMPEGRIALA 309 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHH--hCCcHHHHHHH
Confidence 5677888888889999999999999999999999999987755 55677776555544444444333 244 6667777
Q ss_pred HHHHHHH
Q psy879 301 GLLARLC 307 (317)
Q Consensus 301 ~~~~~~~ 307 (317)
..+.-+|
T Consensus 310 ~~~~~l~ 316 (413)
T PRK13342 310 QAVIYLA 316 (413)
T ss_pred HHHHHHH
Confidence 7776666
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=1.6e-33 Score=266.31 Aligned_cols=266 Identities=21% Similarity=0.313 Sum_probs=212.8
Q ss_pred cccCCCCCCcccCCHHHHH---HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVE---RLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
+||||++|++++||++++. .+..++.+++.+|++||||||+||||+|+++++.+. ..+..+++.. .+...+
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~~lna~~-~~i~di 93 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR-----AHFSSLNAVL-AGVKDL 93 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccceeehhhh-hhhHHH
Confidence 6899999999999999984 688899999999999999999999999999999863 2345566542 344455
Q ss_pred HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC--CCcCchhHhhhcceeeecCCC
Q psy879 79 RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN--SEKIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~--~~~l~~~i~sR~~~i~f~~~~ 156 (317)
++.+........ ..+.+.++||||+|.++...+++|++.+++ ...++|.+++. ...+.+++.|||..+.|++++
T Consensus 94 r~~i~~a~~~l~--~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs 169 (725)
T PRK13341 94 RAEVDRAKERLE--RHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKALVSRSRLFRLKSLS 169 (725)
T ss_pred HHHHHHHHHHhh--hcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhHhhccccceecCCCC
Confidence 555544322110 114577999999999999999999999985 34445554433 247889999999999999999
Q ss_pred HHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhC---C--C--cccHHHHHhhc-----
Q psy879 157 DAQLLSKVIEICE-------KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG---F--G--HVTAEYVFKVC----- 217 (317)
Q Consensus 157 ~~~~~~~l~~~~~-------~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~---~--~--~i~~~~v~~~~----- 217 (317)
.+++..++...+. .+++.+++++++.++..++||+|++++.|+.++.. . . .++.+.+.+++
T Consensus 170 ~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~ 249 (725)
T PRK13341 170 DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAV 249 (725)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhh
Confidence 9999999999887 46788999999999999999999999999986541 1 1 26666665533
Q ss_pred -----CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hcCCChHHHHH
Q psy879 218 -----DEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK-TLDIPEPLKLS 277 (317)
Q Consensus 218 -----~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 277 (317)
+..+.+.++++++++..+|.++|+.|+..|++.|++|..|.+.+.+.+. ..|+.+.....
T Consensus 250 ~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~ 315 (725)
T PRK13341 250 LYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALV 315 (725)
T ss_pred hcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHH
Confidence 3467889999999999999999999999999999999999999988776 55775544433
No 51
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=6.6e-33 Score=246.17 Aligned_cols=292 Identities=19% Similarity=0.276 Sum_probs=211.2
Q ss_pred CCCcccCCHHHHHHHHHHHhcCC---------Cce-EEEECCCCCCHHHHHHHHHHHHcCCCCC----------------
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGN---------VPN-IIISGPPGVGKTTTILCLARILLGPSFK---------------- 61 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~---------------- 61 (317)
.|++++||+++++.|+.++.+++ ++| |||+||+|+|||++|+.+|+.+.|....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 58999999999999999999887 788 9999999999999999999999886410
Q ss_pred --CceEEecC-CCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 62 --DAVLELNA-SNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 62 --~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
..+..+.+ ....+++++++.+..+...+. .++++|+||||+|.|++..+|+|+++||+|++++.||++|+++..
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~---~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPS---TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPED 159 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcc---cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHH
Confidence 11222222 234678889988877766553 378999999999999999999999999999999999999999999
Q ss_pred CchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh---------h----CC
Q psy879 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH---------N----GF 205 (317)
Q Consensus 139 l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~---------~----~~ 205 (317)
++++|+|||+.+.|++|+.+++..||.+.. .++++.+..++..++|+++.++..+..-. . -.
T Consensus 160 llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-----~~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~~l~ 234 (394)
T PRK07940 160 VLPTIRSRCRHVALRTPSVEAVAEVLVRRD-----GVDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLALRLA 234 (394)
T ss_pred ChHHHHhhCeEEECCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998522 36788888999999999999877653200 0 00
Q ss_pred Cc---c---------cHHHHHhhcCCCCHHHHHHHHHHH--------------------------hc--------CCHHH
Q psy879 206 GH---V---------TAEYVFKVCDEPHPLAVKEMLLNC--------------------------VE--------GNMKD 239 (317)
Q Consensus 206 ~~---i---------~~~~v~~~~~~~~~~~i~~l~~~~--------------------------~~--------~~~~~ 239 (317)
.. + ..+++....+.........+.+.+ .. .....
T Consensus 235 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (394)
T PRK07940 235 RVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDALDR 314 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhhHHH
Confidence 00 0 001111122222222222222221 00 01222
Q ss_pred ----HHHHHHHHH--HcCCCHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 240 ----SYKIIHHLY--KLGYAPE----DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 240 ----~~~~~~~l~--~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
...|++|++ ..|.+.. +....+...+. ..+.....+.++.+.+....+..|+|+++.+|.|+.++...
T Consensus 315 ~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~--~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~~ 392 (394)
T PRK07940 315 ALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAA--RSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQA 392 (394)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 566677763 3332221 11222333444 45666778899999999999999999999999999999764
No 52
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=9.7e-33 Score=239.01 Aligned_cols=272 Identities=18% Similarity=0.325 Sum_probs=203.6
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC------------C-CceEEecCC---
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF------------K-DAVLELNAS--- 70 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~------------~-~~~~~~~~~--- 70 (317)
.|++++||+++++.|..++.+|+++| |||+||+|+||+++|.++++.+.|... + ..+..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 58999999999999999999999988 999999999999999999999987641 1 112222211
Q ss_pred --------------------CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEE
Q psy879 71 --------------------NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFA 130 (317)
Q Consensus 71 --------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~i 130 (317)
...+++++++....+...+.. ++++|+|||++|.|+..++|+|+++||+|| ++.||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~---~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLE---APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCccc---CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 124567888877777666543 789999999999999999999999999999 88999
Q ss_pred EEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccH
Q psy879 131 LACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTA 210 (317)
Q Consensus 131 l~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~ 210 (317)
++|+++++++++|+|||+.++|++++++++.++|......++. +.....++..++|+++.+++.++... .+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l~~~~----~~~~ 230 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANIEQLQ----SIPP 230 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHHHHHH----HHHH
Confidence 9999999999999999999999999999999999987543322 22246788999999999999886431 1111
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhH
Q psy879 211 EYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY-KLGYAPE-DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLR 288 (317)
Q Consensus 211 ~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (317)
+ +...+..+. .+...++.+...+. ..+.+-. .++..+..++.. . .....+++.+.+..+.
T Consensus 231 ~-------------~~~~~~~~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~---~-~~~~~~~~~l~~a~~~ 292 (314)
T PRK07399 231 E-------------LLQKLEQPP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQ---K-TKNRQLLKQLEKLRKQ 292 (314)
T ss_pred H-------------HHHHHHhcc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---h-hcchHHHHHHHHHHHH
Confidence 1 122222222 35556665544442 2222221 223333333432 1 1257789999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHH
Q psy879 289 ISEGVNSLLQLSGLLARLCI 308 (317)
Q Consensus 289 l~~g~~~~l~le~~~~~~~~ 308 (317)
+..|+|+++.+|.++.+++.
T Consensus 293 l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 293 LLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred HHHcCCcchhHHHHHHHHhc
Confidence 99999999999999999974
No 53
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.4e-32 Score=240.86 Aligned_cols=289 Identities=19% Similarity=0.232 Sum_probs=204.3
Q ss_pred CCCcccC-CHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------CceEE
Q psy879 8 TFSDIVG-NEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK-------------------DAVLE 66 (317)
Q Consensus 8 ~~~~~~g-~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~-------------------~~~~~ 66 (317)
.|+.++| |+++.+.|...+.+|++|| |||+||+|+||+++|+.+++.+.|.... ..+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 5788999 9999999999999999999 8999999999999999999999876411 11222
Q ss_pred ecC-CCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhh
Q psy879 67 LNA-SNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQS 145 (317)
Q Consensus 67 ~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (317)
+.. ....+++++++....+...+. .++++|+||||+|.|+.+++|+|+++||+||+++.||++|+++.+++++|+|
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~---~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGV---ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCc---ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 222 234677899998887776653 3789999999999999999999999999999999999999999999999999
Q ss_pred hcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHH
Q psy879 146 RCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAV 225 (317)
Q Consensus 146 R~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i 225 (317)
||+.++|++++++++..++.+ +| ++++....++.. .|+++.|+..++.-......-........+........
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSEDDWFAQARALVIKLYEALHEKDLQSF 232 (329)
T ss_pred hceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhcCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999888865 35 556665566555 57899999877532110000000111111111111112
Q ss_pred HHHHHHHh----cCC-----HHHHHHHHHHHH--HcCCCHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHh
Q psy879 226 KEMLLNCV----EGN-----MKDSYKIIHHLY--KLGYAPE----DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290 (317)
Q Consensus 226 ~~l~~~~~----~~~-----~~~~~~~~~~l~--~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 290 (317)
..+.+.+. .++ ..-...+++|++ ..|.+.. +....+..++. ..+.....++++.+.+...++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~--~~s~~~l~~~~~~~~~~~~~l~ 310 (329)
T PRK08058 233 VFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLAL--SYSQQQIVAALELILEAKRRLN 310 (329)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHH
Confidence 22222121 111 112334456653 2232221 11122233334 5677788889999999999999
Q ss_pred cCCCcHHHHHHHHHHHHH
Q psy879 291 EGVNSLLQLSGLLARLCI 308 (317)
Q Consensus 291 ~g~~~~l~le~~~~~~~~ 308 (317)
.|+|+++.+|.++.++.+
T Consensus 311 ~n~n~~L~le~lll~~~~ 328 (329)
T PRK08058 311 SNVNFQLVMEQLVLRLQE 328 (329)
T ss_pred HcCCHHHHHHHHHHhccc
Confidence 999999999999998763
No 54
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=9.9e-32 Score=234.41 Aligned_cols=286 Identities=21% Similarity=0.237 Sum_probs=209.6
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------CceEEecCC---
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK-------------------DAVLELNAS--- 70 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~-------------------~~~~~~~~~--- 70 (317)
.+....+.|...+.+|+.+| +||+||+|+||+++|+++|+.+.|.... ..+..+.+.
T Consensus 6 Wl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (334)
T PRK07993 6 WLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK 85 (334)
T ss_pred CChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 46788899999999999999 9999999999999999999999885321 123333322
Q ss_pred CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhccee
Q psy879 71 NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAML 150 (317)
Q Consensus 71 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i 150 (317)
..++++++|+....+..++. .+++||+|||++|.|+..++|+|+|+|||||+++.||++|+++++++|||+|||+.+
T Consensus 86 ~~I~idqiR~l~~~~~~~~~---~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 86 SSLGVDAVREVTEKLYEHAR---LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred ccCCHHHHHHHHHHHhhccc---cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 34789999999888887763 388999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHH
Q psy879 151 RYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL 230 (317)
Q Consensus 151 ~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~ 230 (317)
.|++++++++..||.+. ..++++.+..++..++|++..|+..++.-......-..+.+....... ....++.
T Consensus 163 ~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~~~~l~~~~~~~---~~~~~~~ 234 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQPERWQQREALCQALAYALPSG---DWLSLLP 234 (334)
T ss_pred cCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHHhcCC---CHHHHHH
Confidence 99999999999999763 246677777889999999999998875311100000011111112211 2233444
Q ss_pred HHhcCCHHHHHH----HHHHHH--HcCCCHH---HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhc--CCCcHHHH
Q psy879 231 NCVEGNMKDSYK----IIHHLY--KLGYAPE---DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE--GVNSLLQL 299 (317)
Q Consensus 231 ~~~~~~~~~~~~----~~~~l~--~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--g~~~~l~l 299 (317)
.+...+....+. ++.|++ +.|.... +....+..++. ..+.....+.++.+.+....+.. |+|+++.+
T Consensus 235 ~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~--~~~~~~l~~~~~~l~~~~~~l~~~~N~N~~L~l 312 (334)
T PRK07993 235 ALNHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLAN--HLSPARLQAILGDVCHCREQLLSVTGVNRELLL 312 (334)
T ss_pred HHcccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444344444443 455553 2332111 11112223333 46667777889999999999985 88999999
Q ss_pred HHHHHHHHHhhcc
Q psy879 300 SGLLARLCIVGSK 312 (317)
Q Consensus 300 e~~~~~~~~~~~~ 312 (317)
|.++.++......
T Consensus 313 e~lll~~~~~~~~ 325 (334)
T PRK07993 313 TDLLLRIEHYLQP 325 (334)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999876443
No 55
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.4e-31 Score=229.76 Aligned_cols=282 Identities=18% Similarity=0.230 Sum_probs=204.7
Q ss_pred HHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------CceEEecCC---CCcCh
Q psy879 19 VERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK-------------------DAVLELNAS---NDRGI 75 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~-------------------~~~~~~~~~---~~~~~ 75 (317)
...++.++.+|+.+| |||+||+|+||+++|+.+|+.+.|.... ..+..+.+. ...++
T Consensus 9 ~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~i 88 (328)
T PRK05707 9 QSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKV 88 (328)
T ss_pred HHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCH
Confidence 344566677799999 9999999999999999999999985321 123333322 35788
Q ss_pred HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCC
Q psy879 76 DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155 (317)
Q Consensus 76 ~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~ 155 (317)
+++|+....+...+. .++++|+|||++|.|+.+++|+|+++||+||+++.||++|++++.++++|+|||+.+.|+++
T Consensus 89 d~iR~l~~~~~~~~~---~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~ 165 (328)
T PRK05707 89 DQVRELVSFVVQTAQ---LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLP 165 (328)
T ss_pred HHHHHHHHHHhhccc---cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCc
Confidence 999998888877663 37899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcC
Q psy879 156 TDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235 (317)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~ 235 (317)
+.+++..||..... ..+++.+..++..++|++..|+..++.-......-..+.+..+..... ....+.+.+...
T Consensus 166 ~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~~~~--~~~~~~~~~~k~ 239 (328)
T PRK05707 166 SNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQQ--SASQLAESWLKV 239 (328)
T ss_pred CHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhcCcc--cHHHHHHHHccC
Confidence 99999999987531 245666677889999999999887643111100111112222222111 344555555544
Q ss_pred CHHHHHH----HHHHHH--HcCCCH-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHh--cCCCcHHHHHHH
Q psy879 236 NMKDSYK----IIHHLY--KLGYAP-----EDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS--EGVNSLLQLSGL 302 (317)
Q Consensus 236 ~~~~~~~----~~~~l~--~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~g~~~~l~le~~ 302 (317)
+....+. +++|++ ..|.+. .+....+..++. ..+......+++.+.+...++. .|+|.++.+|.+
T Consensus 240 ~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~--~~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L~le~l 317 (328)
T PRK05707 240 PLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQ--KSPQAKVLALQDWLLEQRQKVLGKANLNRQLLLEAL 317 (328)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 5444444 455553 333222 222333444455 4566677788999999999885 789999999999
Q ss_pred HHHHHHhhc
Q psy879 303 LARLCIVGS 311 (317)
Q Consensus 303 ~~~~~~~~~ 311 (317)
+.++....+
T Consensus 318 ll~~~~~~~ 326 (328)
T PRK05707 318 LVQWAGLPG 326 (328)
T ss_pred HHHHHHHhc
Confidence 999986543
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.7e-30 Score=226.63 Aligned_cols=290 Identities=19% Similarity=0.267 Sum_probs=209.6
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-----C---------------
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-----K--------------- 61 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-----~--------------- 61 (317)
...|..+++++||+++.+.|..++.+|+.|| +||+||+|+|||++++.+++.+.|... .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 4689999999999999999999999999999 999999999999999999999987310 0
Q ss_pred -----CceEEecC---------CCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCc
Q psy879 62 -----DAVLELNA---------SNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTT 127 (317)
Q Consensus 62 -----~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~ 127 (317)
..+..+.. ....+++++++....+...+ ..+.++|+||||+|.|+..++|+|++.+|+|+.++
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~---~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS---GDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc---ccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 00122211 12345788888777766654 33789999999999999999999999999999999
Q ss_pred eEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCc
Q psy879 128 RFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH 207 (317)
Q Consensus 128 ~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~ 207 (317)
.||++++.+.+++++++|||+.++|++++.+++..||.......+ ++++.+..++..++|++|.+++.++.... .
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~~~~---~ 247 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNYGGL---E 247 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhcCcH---H
Confidence 999999999999999999999999999999999999998654333 67888999999999999999999865321 1
Q ss_pred ccHHHHHhhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hH----HHHHHHH
Q psy879 208 VTAEYVFKVCD--EPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIP-EP----LKLSIIQ 280 (317)
Q Consensus 208 i~~~~v~~~~~--~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~----~~~~~~~ 280 (317)
+. ..+...+. ........++.+.+...+....+.|+.+++. ..+.+.+...+.. +. ...++++
T Consensus 248 ~~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~l~---------d~l~~~~~~~~~~g~~~~~~~~~~~~~ 317 (351)
T PRK09112 248 II-ATIDQLLAGSGPDARKAHKLADALSGRESEVQFDFFRDHLL---------DRIMAEARRAAEAGDLALAERLARLWS 317 (351)
T ss_pred HH-HHHHHHHhhccCCcchHHHHHHHHhCCChHHHHHHHHHHHH---------HHHHHHHHhhcccCchhhHHHHHHHHH
Confidence 11 12222222 2222345677777777777777777766632 2333333331111 11 1223333
Q ss_pred HHHHHHhHH-hcCCCcHHHHHHHHHHHHHhh
Q psy879 281 EIGNVHLRI-SEGVNSLLQLSGLLARLCIVG 310 (317)
Q Consensus 281 ~l~~~~~~l-~~g~~~~l~le~~~~~~~~~~ 310 (317)
.+.+.-..- --|.++.-.+-.++.++.+..
T Consensus 318 ~~~~~~~~~~~~nld~~~~~~~~~~~~~~~~ 348 (351)
T PRK09112 318 EIIEEIVEAEAYNLDRKQTVISLLEKLHRAF 348 (351)
T ss_pred HHHHHHhhhhhhCcCHHHHHHHHHHHHHHHH
Confidence 333222111 235688888888888877654
No 57
>KOG2028|consensus
Probab=100.00 E-value=1.2e-31 Score=225.50 Aligned_cols=266 Identities=21% Similarity=0.331 Sum_probs=218.3
Q ss_pred cccCCCCCCcccCCHHHHHH---HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~---l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
|+-||++++|++||++++.. |+.++++++.|.++||||||||||++|+.++.. ....++.++++.+.+ .+..++
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~t--sk~~SyrfvelSAt~-a~t~dv 206 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST--SKKHSYRFVELSATN-AKTNDV 206 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh--cCCCceEEEEEeccc-cchHHH
Confidence 68899999999999998874 889999999999999999999999999999986 344557788887754 566677
Q ss_pred HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEec--CCCcCchhHhhhcceeeecCCC
Q psy879 79 RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN--NSEKIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~--~~~~l~~~i~sR~~~i~f~~~~ 156 (317)
|+.++........ ..++.|+||||++.+++..|+.|+..+|. +.+.+|.+|+ +...+..++.|||.++.+.+++
T Consensus 207 R~ife~aq~~~~l--~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 207 RDIFEQAQNEKSL--TKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATTENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred HHHHHHHHHHHhh--hcceeEEEeHHhhhhhhhhhhcccceecc--CceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence 8777654433211 25788999999999999999999999995 5566777643 3468999999999999999999
Q ss_pred HHHHHHHHHHHHHH----c---------CCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh---------CCCcccHHHHH
Q psy879 157 DAQLLSKVIEICEK----E---------NISHTNDGLEAIVFTAQGDMRQALNNLQSTHN---------GFGHVTAEYVF 214 (317)
Q Consensus 157 ~~~~~~~l~~~~~~----~---------~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~---------~~~~i~~~~v~ 214 (317)
.+.+..+|...... + .+.+++.++++++..+.||.|.++|.|+..+. ....++.++|+
T Consensus 283 ~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvk 362 (554)
T KOG2028|consen 283 VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVK 362 (554)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHH
Confidence 99999999985431 1 12467889999999999999999999987632 22368889988
Q ss_pred hhc----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hcCCChHH
Q psy879 215 KVC----------DEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK-TLDIPEPL 274 (317)
Q Consensus 215 ~~~----------~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 274 (317)
+.+ +..+++.|+.+-+.++..|....+.|+..|++.|++|..+.+.+.|++. .+|+.+.+
T Consensus 363 e~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGlaD~S 433 (554)
T KOG2028|consen 363 EGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPS 433 (554)
T ss_pred HHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcccCcCCch
Confidence 754 3456678999999999999999999999999999999999999999875 44666554
No 58
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=3e-30 Score=227.55 Aligned_cols=293 Identities=21% Similarity=0.288 Sum_probs=203.6
Q ss_pred cCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCC--------------------
Q psy879 4 YRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKD-------------------- 62 (317)
Q Consensus 4 y~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~-------------------- 62 (317)
.+|+++++++||+++++.|..++.+|++|| +||+||+|+||+++|.++|+.+.|.....
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999999 99999999999999999999998754210
Q ss_pred ---------ceEEecC---C------CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc
Q psy879 63 ---------AVLELNA---S------NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS 124 (317)
Q Consensus 63 ---------~~~~~~~---~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~ 124 (317)
.+..+.. . ..++++++++....+..++ ..+.++|+||||+|.|+..++|+|++.+|+|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~---~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA---AEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc---ccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 1122211 1 2356788888877766554 33789999999999999999999999999999
Q ss_pred CCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhC
Q psy879 125 NTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG 204 (317)
Q Consensus 125 ~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~ 204 (317)
+++.||++|+++..++++++|||+.+.|++++.+++..+|.... ...++..+..++..++|+++.++..++.-..
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~~- 244 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAGGDGL- 244 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhcccch-
Confidence 99999999999999999999999999999999999999998853 3344555678899999999999998853211
Q ss_pred CCcccHHHHHhhcCC---CCHHHHHHHHHHHhcCC----HHHHHHH----HHHHHHcCC----CHHHHH---HHHHHHHH
Q psy879 205 FGHVTAEYVFKVCDE---PHPLAVKEMLLNCVEGN----MKDSYKI----IHHLYKLGY----APEDII---GNIFRVAK 266 (317)
Q Consensus 205 ~~~i~~~~v~~~~~~---~~~~~i~~l~~~~~~~~----~~~~~~~----~~~l~~~~~----~~~~i~---~~~~~~~~ 266 (317)
.. .+.+...+.. .....+..+.+.+...+ ....+.| +.++...+. .+..+. ..+.....
T Consensus 245 --~~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (365)
T PRK07471 245 --AL-YRRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGEAALLARLAP 321 (365)
T ss_pred --HH-HHHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHhhcc
Confidence 11 1122222211 12223355666555555 3333333 344433211 111111 11111111
Q ss_pred hcCCChHHHHHHHHHHHHHHhHHh-cCCCcHHHHHHHHHHHHHh
Q psy879 267 TLDIPEPLKLSIIQEIGNVHLRIS-EGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~l~-~g~~~~l~le~~~~~~~~~ 309 (317)
........++++.+.+.-..-. .|.|+++.++.++.++...
T Consensus 322 --~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 322 --DARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred --chhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 1112223334444444433322 5889999999999998753
No 59
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.5e-30 Score=222.98 Aligned_cols=280 Identities=16% Similarity=0.172 Sum_probs=200.0
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC----------------CceEEe--cCC----
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK----------------DAVLEL--NAS---- 70 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~----------------~~~~~~--~~~---- 70 (317)
-++.+++.|...+.+|++|| +||+||+|+||+++|.++|+.+.|.... ..+..+ .+.
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~ 87 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD 87 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc
Confidence 47788999999999999999 9999999999999999999999886421 112223 221
Q ss_pred ---CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhc
Q psy879 71 ---NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147 (317)
Q Consensus 71 ---~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~ 147 (317)
...+++++|+....+...+. .++++|+|||++|.|+..++|+|+|+||+||+++.||++|+++++++|||+|||
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p~---~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTPQ---YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred cccccccHHHHHHHHHHHhhCcc---cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 13568899988887776663 378999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHH
Q psy879 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKE 227 (317)
Q Consensus 148 ~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~ 227 (317)
+.+.|++++.+++..||.+. + +++..+..++..++|++..|+..++.-......-..+.+..+..... .+.+
T Consensus 165 q~i~~~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~r~~~~~~l~~~~~~~~--~~~~ 236 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLAAQWLREDGLALRRAVAQDLEQIASGRA--GAVD 236 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHhccCcc--cHHH
Confidence 99999999999999999762 3 55666667789999999999887743211100001122222222211 2455
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHH
Q psy879 228 MLLNCVEGN-MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARL 306 (317)
Q Consensus 228 l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~ 306 (317)
+.+.+...+ ..-.+.|+.|++..... ...+ .. . ......+....+.+....+.+|.|++|.+|.++.++
T Consensus 237 ~a~~~~~~~~~~~l~~~~~Dll~~~~~-~~~~------~~--~-~~~~L~~~~~~l~~~~~~~~~~lN~~L~le~lll~~ 306 (319)
T PRK08769 237 VAQRWTNDGQADQRLRHAADLALAQAS-AGLT------DP--S-RLHKLATWFDAANRTRDLLRTTVRADLAVTELLLAW 306 (319)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcC-Cccc------Ch--h-hHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 555554332 34556666666432111 0000 00 0 112233445556677677778999999999999999
Q ss_pred HHhhccCC
Q psy879 307 CIVGSKNK 314 (317)
Q Consensus 307 ~~~~~~~~ 314 (317)
......++
T Consensus 307 ~~~~~~~~ 314 (319)
T PRK08769 307 REGERQPR 314 (319)
T ss_pred HHHhcccc
Confidence 88765543
No 60
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=1.1e-29 Score=219.26 Aligned_cols=281 Identities=21% Similarity=0.189 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------CceEEecC--CC
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK-------------------DAVLELNA--SN 71 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~-------------------~~~~~~~~--~~ 71 (317)
.+....+.|...+.+|+.+| +||+||+|+||+++|+.+|+.+.|.... ..+..+.+ ..
T Consensus 6 W~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 6 WLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred chHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC
Confidence 46778889999999999999 9999999999999999999999985421 11333332 34
Q ss_pred CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceee
Q psy879 72 DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLR 151 (317)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~ 151 (317)
..+++++|+....+...+. .+++||+|||++|.|+..++|+|+|+|||||+++.||++|+++++++|||+|||+.+.
T Consensus 86 ~I~id~iR~l~~~~~~~~~---~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 86 DIGVDQVREINEKVSQHAQ---QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred CCCHHHHHHHHHHHhhccc---cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 5789999998887777663 3789999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHH
Q psy879 152 YNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231 (317)
Q Consensus 152 f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~ 231 (317)
|++++++++.+||.... ..++..+...+..++|++..|+..++.-......-..+.+....... ...+++..
T Consensus 163 ~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~~~~~~l~~~~~~~---~~~~~~~~ 234 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRR---SPLELLPL 234 (325)
T ss_pred CCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHHHHHHHHHHHHhccC---CHHHHHHH
Confidence 99999999999999864 23344466677889999998987764321100000001111111111 22334443
Q ss_pred HhcCCHH----HHHHHHHHHH--HcCCCH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHh--cCCCcHHHH
Q psy879 232 CVEGNMK----DSYKIIHHLY--KLGYAP----EDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS--EGVNSLLQL 299 (317)
Q Consensus 232 ~~~~~~~----~~~~~~~~l~--~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~g~~~~l~l 299 (317)
+...+.. -.+.++.|++ +.|.+. .+....+..++. ..+.....++++.+.+...++. .|.|..|.+
T Consensus 235 ~~k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~--~~s~~~L~~~i~~i~~~r~~L~~~~~iN~~L~l 312 (325)
T PRK06871 235 FDKELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQ--QQSAQGLLKAHQIIQKVRSDLLQINAVNQELIL 312 (325)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHcccccCHHHHH
Confidence 3322332 2445566663 333222 122333444445 5677788889999999999994 555999999
Q ss_pred HHHHHHHH
Q psy879 300 SGLLARLC 307 (317)
Q Consensus 300 e~~~~~~~ 307 (317)
+..++.+.
T Consensus 313 ~~~l~~~~ 320 (325)
T PRK06871 313 LDGLTRLV 320 (325)
T ss_pred HHHHHHHH
Confidence 99998875
No 61
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=6.6e-29 Score=215.86 Aligned_cols=277 Identities=16% Similarity=0.182 Sum_probs=199.3
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC---CC-----------------ceEEecCC--
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF---KD-----------------AVLELNAS-- 70 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~---~~-----------------~~~~~~~~-- 70 (317)
.+...++.|... .++.|| |||+||+|+||+++|+.+|+.+.|... .. .+..+.+.
T Consensus 5 W~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~ 82 (342)
T PRK06964 5 WQTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEAL 82 (342)
T ss_pred ccHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc
Confidence 356677777764 568888 999999999999999999999998542 11 12222111
Q ss_pred ---------------------------CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc
Q psy879 71 ---------------------------NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY 123 (317)
Q Consensus 71 ---------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~ 123 (317)
...+++++++....+...+ ..++++|+|||++|.|+..+.|+|||++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~---~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP 159 (342)
T PRK06964 83 AAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGT---HRGGARVVVLYPAEALNVAAANALLKTLEEP 159 (342)
T ss_pred cccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCC---ccCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 2467789998887766555 3478999999999999999999999999999
Q ss_pred cCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q psy879 124 SNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 124 ~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~ 203 (317)
|+++.||++|+++++++|||+|||+.+.|++++.+++..||.+. + +++. +.++..++|++..|+..+..-
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~~~~-- 229 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALASDE-- 229 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHHCCC--
Confidence 99999999999999999999999999999999999999999874 3 3332 335778899999999877321
Q ss_pred CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHH----HHHHHHH--HcCCCHH---HHHHHHHHHHHhcCCChHH
Q psy879 204 GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY----KIIHHLY--KLGYAPE---DIIGNIFRVAKTLDIPEPL 274 (317)
Q Consensus 204 ~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~----~~~~~l~--~~~~~~~---~i~~~~~~~~~~~~~~~~~ 274 (317)
.... .+.+...+..........+.+.+...+....+ .++.|++ +.|.++. +....+...+. .++...
T Consensus 230 -~~~~-~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~~~a~--~~~~~~ 305 (342)
T PRK06964 230 -NRPL-RDWTLGQLAAGAACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALARCAA--AVDANA 305 (342)
T ss_pred -hHHH-HHHHHHHHhccCchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHHHHHH--cCCHHH
Confidence 1111 11121122222223455566655544544444 4456653 2332221 11223444445 556677
Q ss_pred HHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 275 KLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 275 ~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
..++++.+.+....+..|+|++|.+|.++.++...
T Consensus 306 L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~~ 340 (342)
T PRK06964 306 LARFAKAVTRQRAVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred HHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHHH
Confidence 78889999999989999999999999999998754
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=1.1e-30 Score=209.44 Aligned_cols=186 Identities=22% Similarity=0.290 Sum_probs=138.2
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHh-----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSS-----SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 76 (317)
++.||++|+|++||++++..+..+++ +..++|++||||||+||||+|+.+|+++. ..+...++.......
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i~k~~ 90 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAIEKAG 90 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--SCH
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhhhhHH
Confidence 46899999999999999998776553 34578999999999999999999999963 234555554333444
Q ss_pred HHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCceEEEEecCCCc
Q psy879 77 TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------------NTTRFALACNNSEK 138 (317)
Q Consensus 77 ~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------------~~~~~il~~~~~~~ 138 (317)
++...+..+ ..+.|+||||++.+++..++.|+.+||+.. +...+|.+|+....
T Consensus 91 dl~~il~~l---------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ 161 (233)
T PF05496_consen 91 DLAAILTNL---------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGL 161 (233)
T ss_dssp HHHHHHHT-----------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCC
T ss_pred HHHHHHHhc---------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccc
Confidence 454444322 356799999999999999999999999542 23447888889899
Q ss_pred CchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q psy879 139 IIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201 (317)
Q Consensus 139 l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~ 201 (317)
+.+++++||.. .++..|+.+++.+++...+...+++++++++..++..|.|.+|-|.++|+.+
T Consensus 162 ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 162 LSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp TSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred cchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99999999999 5799999999999999999999999999999999999999999999999875
No 63
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=1.9e-28 Score=211.08 Aligned_cols=279 Identities=13% Similarity=0.152 Sum_probs=195.3
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC------------------CceEEecC---CC
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------DAVLELNA---SN 71 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------~~~~~~~~---~~ 71 (317)
-+....+.|...+.+|++|| +||+||+|+||+++|+.+|+.+.|.... ..+..+.+ ..
T Consensus 7 Wl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 7 WLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 46788899999999999999 9999999999999999999999875421 12333433 23
Q ss_pred CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceee
Q psy879 72 DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLR 151 (317)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~ 151 (317)
.++++++|+.......++. .+++||+|||++|.|+..++|+|+|++||||+++.||++|+++++++|||+|||+.+.
T Consensus 87 ~I~vdqiR~l~~~~~~~~~---~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 87 SITVEQIRQCNRLAQESSQ---LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred cCCHHHHHHHHHHHhhCcc---cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 4788999987776666553 3789999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHH
Q psy879 152 YNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231 (317)
Q Consensus 152 f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~ 231 (317)
|++++++++.+||.+. +++ ....++..++|++..|+..++.-......-..+.+...+.... ..++.+...
T Consensus 164 ~~~~~~~~~~~~L~~~----~~~----~~~~~l~l~~G~p~~A~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~a~~ 234 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQ----GIT----VPAYALKLNMGSPLKTLAMMKEGGLEKYHKLERQLVDALSGPV-SDQLKCASL 234 (319)
T ss_pred CCCCCHHHHHHHHHHc----CCc----hHHHHHHHcCCCHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCc-ccHHHHHHH
Confidence 9999999999999763 433 2345678899999999987742111100011122222222222 234455555
Q ss_pred HhcCCHHHHH----HHHHHHH--HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHh--cCCCcHHHHHHHH
Q psy879 232 CVEGNMKDSY----KIIHHLY--KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS--EGVNSLLQLSGLL 303 (317)
Q Consensus 232 ~~~~~~~~~~----~~~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~g~~~~l~le~~~ 303 (317)
+...+ ...+ .++.|++ ..|....+....+..+ . ..+.......++.+.+...++. .+.|..+.++.++
T Consensus 235 ~~~~~-~~~l~~L~~ll~Dll~~~~g~~~~~~~~~~~~l-~--~~~~~~l~~~~~~l~~~~~~L~~~~~ln~elll~~ll 310 (319)
T PRK06090 235 IAADP-LTHLSWLWLLLTDAQKVHFGVQNEYYLPGSAAL-G--PFTYSGLYVSTAKLERLKEQLQQFSGLNTELLIMNWL 310 (319)
T ss_pred HhcCc-HHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHH-H--hhCHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 43322 3333 3445553 2332222222222222 1 2233444556777888888886 3449999999999
Q ss_pred HHHHH
Q psy879 304 ARLCI 308 (317)
Q Consensus 304 ~~~~~ 308 (317)
.++..
T Consensus 311 l~~~~ 315 (319)
T PRK06090 311 IESRE 315 (319)
T ss_pred HHHHH
Confidence 98854
No 64
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=4.1e-28 Score=204.86 Aligned_cols=255 Identities=17% Similarity=0.148 Sum_probs=186.3
Q ss_pred HHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-----------CCceEEecCC---CCcChHHHHHH
Q psy879 17 DTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-----------KDAVLELNAS---NDRGIDTVRNK 81 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-----------~~~~~~~~~~---~~~~~~~i~~~ 81 (317)
..++.|...+++|+.+| |+|+||+|+||+++|..+|+.+.|... ...+..+.+. ...+++++|+.
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 45778999999999999 999999999999999999999998531 1223333322 23678999998
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHH
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~ 161 (317)
...+...+. .+.++|+|||++|.|+.+++|+|++++|+||+++.||++|++++.++|||+|||+.+.|+++.
T Consensus 84 ~~~~~~~p~---e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~----- 155 (290)
T PRK05917 84 KKQIWIHPY---ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE----- 155 (290)
T ss_pred HHHHhhCcc---CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh-----
Confidence 888877764 388999999999999999999999999999999999999999999999999999999999861
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH--HHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHH
Q psy879 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMR--QALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239 (317)
Q Consensus 162 ~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r--~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~ 239 (317)
...++++.+..++..++|+++ ++...+... .+...... .+.+..+ .+-
T Consensus 156 ----------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~~--------~~~~~~~~----re~~~~~--------L~~ 205 (290)
T PRK05917 156 ----------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKGS--------ADTDKQVL----RDKTKAM--------LEV 205 (290)
T ss_pred ----------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhcc--------hHHHHHHH----HHHHHHH--------HHH
Confidence 124678888889999999885 223222211 01000000 1112222 234
Q ss_pred HHHHHHHH--HHcCCCHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 240 SYKIIHHL--YKLGYAPED-IIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 240 ~~~~~~~l--~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
.+.+++|+ +..|.+... +.......+... +......+++.+.+...++..|+|+++.+|.|+.++.....
T Consensus 206 ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~~--~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l~~~~~ 278 (290)
T PRK05917 206 LLQLFRDRFLLALKVPASALAYPDLLKEILTL--PVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQLWSLKN 278 (290)
T ss_pred HHHHHHHHHHHHcCCchhhhccHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 56667776 344444332 222222222222 22336789999999999999999999999999999976543
No 65
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=1.3e-27 Score=204.59 Aligned_cols=277 Identities=14% Similarity=0.193 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC--------CCCceEEecC-CCCcChHHHHHHHHHH
Q psy879 16 EDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPS--------FKDAVLELNA-SNDRGIDTVRNKIKMF 85 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~--------~~~~~~~~~~-~~~~~~~~i~~~~~~~ 85 (317)
..+++.+...+++|+++| |||+|++|+||+++++.+++.+.|.. ....+..++. ....+.+++++....+
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~ 81 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKL 81 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHh
Confidence 356788999999999999 99999999999999999999997732 1112333331 2346778888887776
Q ss_pred HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHH
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVI 165 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~ 165 (317)
...+.. .++++|+|||+++.|+..++|+|++++|+||+++.+|++|+++.+++++|+|||+.++|.+++++++..||.
T Consensus 82 ~~~~~~--~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 82 YFSSFV--QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ccCCcc--cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 555421 258999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCC--CHHHHHHHHHHHhcCC-----HH
Q psy879 166 EICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEP--HPLAVKEMLLNCVEGN-----MK 238 (317)
Q Consensus 166 ~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~--~~~~i~~l~~~~~~~~-----~~ 238 (317)
.. + ++++....++..++ ++.+|+..+..... -....+.+.+... ....+....+...+++ ..
T Consensus 160 ~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ke~~~~ll~ 228 (299)
T PRK07132 160 SK----N--KEKEYNWFYAYIFS-NFEQAEKYINKESE----NLLKKFEEALNKSLKEKYELILFLNKKLTKENALFLLK 228 (299)
T ss_pred Hc----C--CChhHHHHHHHHcC-CHHHHHHHHhcCCH----HHHHHHHHHHHHhhhhHHHHHHHHHhhcChhhHHHHHH
Confidence 63 3 56676677777777 59999988643211 0011111111000 1112222222222211 12
Q ss_pred HHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 239 DSYKIIHHLY--KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 239 ~~~~~~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
-...|+++++ ..+.+...+... ....+.... ...++++.+.++..++.+|+|..+++|.|+.++.+.
T Consensus 229 ~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~~---s~~~li~~i~~~~~~L~~N~N~~l~~e~lll~l~e~ 297 (299)
T PRK07132 229 LLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFKI---EFFELITIIDEFLNSLETNENFNLQKQAFLVKIYEI 297 (299)
T ss_pred HHHHHHHHHHHHhccCChHhHhhH-HHHHHHHhc---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2334445553 223444333333 233332222 233458999999999999999999999999999764
No 66
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.7e-28 Score=215.49 Aligned_cols=286 Identities=32% Similarity=0.469 Sum_probs=205.8
Q ss_pred CcccCCHHHHHHHHHHHh-cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC-------------------CCCceEEec
Q psy879 10 SDIVGNEDTVERLKVFSS-SGNVPN-IIISGPPGVGKTTTILCLARILLGPS-------------------FKDAVLELN 68 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~-~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~-------------------~~~~~~~~~ 68 (317)
+++++++++...+..+.. .++.|| +||+||||+|||++|.++|+.+.|.. ....+++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888877776 778899 99999999999999999999998755 235788999
Q ss_pred CCCCcCh----HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHh
Q psy879 69 ASNDRGI----DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQ 144 (317)
Q Consensus 69 ~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (317)
+++..+. +.+++........+ ..++++|+||||+|.|+.++++++++.+|+|+.+++||++||.+.++.++|+
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~---~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~ 157 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESP---LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIR 157 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCC---CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhh
Confidence 9876663 44444444443332 2378999999999999999999999999999999999999999999999999
Q ss_pred hhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHH-
Q psy879 145 SRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL- 223 (317)
Q Consensus 145 sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~- 223 (317)
|||+.++|++++......+.. ++.+..++..+.||+|.+++.++..+.. ......+..........
T Consensus 158 SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~--~~~~~~~~~~~~~~~~~~ 224 (325)
T COG0470 158 SRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL--EIGEESIYEALLLALPES 224 (325)
T ss_pred hcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh--cccHHHHHHHHHhhChhh
Confidence 999999999955444444333 5567888899999999999999987664 22333333322222221
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHhHHhcCCCc
Q psy879 224 ----AVKEMLLNCVEGNMKDSYKIIHH-LYKLGYAPEDIIGNIFRVAKTL---DIPEPLKLSIIQEIGNVHLRISEGVNS 295 (317)
Q Consensus 224 ----~i~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~~ 295 (317)
...+++..... +...+...... +...+.........+.+..... .............+...+.++..+.+.
T Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (325)
T COG0470 225 LAQLAALELLKLAEN-KFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGLLA 303 (325)
T ss_pred cccccHHHHHHHHHh-cchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443331 23333333333 3445555555444444433322 134445666788889999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy879 296 LLQLSGLLARLCIVGSK 312 (317)
Q Consensus 296 ~l~le~~~~~~~~~~~~ 312 (317)
.++++.++..+......
T Consensus 304 ~~~~~~~~~~~~~~~~~ 320 (325)
T COG0470 304 LIQLENLLAELLLLQLL 320 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888765543
No 67
>PRK05907 hypothetical protein; Provisional
Probab=99.95 E-value=3.8e-25 Score=190.87 Aligned_cols=272 Identities=12% Similarity=0.102 Sum_probs=217.1
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCcee
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHK 98 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 98 (317)
...+.+.+++|+ |+|++||..- ......+.+.+.+... ..++.+ ....+. .+......|+. ++++
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~--~~fdg~---~~~~~~---ii~~aetlPfF---aerR 71 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK--SEFDGQ---GLLQQE---LLSWTEHFGLF---ASQE 71 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc--ceecCC---CCCHHH---HHHHHhcCCcc---cCeE
Confidence 344566788888 8899999986 5566666666544332 222222 223333 34444444433 7899
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhccCCceEE-EEecCCC---cCchhHhhhccee----eecCCCHHHHHHHHHHHHHH
Q psy879 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFA-LACNNSE---KIIEPIQSRCAML----RYNKLTDAQLLSKVIEICEK 170 (317)
Q Consensus 99 vliiDE~d~l~~~~~~~ll~~le~~~~~~~~i-l~~~~~~---~l~~~i~sR~~~i----~f~~~~~~~~~~~l~~~~~~ 170 (317)
+|++.+.+++.....+.|.+++++|++.+.+| ++. ..+ ++.+.+.. +..+ .|+++.+.++.+|+.+++++
T Consensus 72 lV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~Wi~~~~~~ 149 (311)
T PRK05907 72 TIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQLLIQRAKE 149 (311)
T ss_pred EEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhh-cceeccccccCCCCHHHHHHHHHHHHHH
Confidence 99999888888777889999999999976666 544 322 23344443 4445 89999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHhhh---CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy879 171 ENISHTNDGLEAIVFTA-QGDMRQALNNLQSTHN---GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHH 246 (317)
Q Consensus 171 ~~~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~---~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 246 (317)
+|+.+++++++.++..+ ++|+..+.+++++.+. +.+.|+.++|.+++..+.+.++|++++++..++..+|+.++++
T Consensus 150 ~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~Al~il~~ 229 (311)
T PRK05907 150 LGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVEGHSLLRS 229 (311)
T ss_pred cCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999 6999999999999655 4668999999999999999999999999999999999999999
Q ss_pred HHHc-CCCHHHHHHHHHHHHHhc--------C----------CChHHHHHHHHHHHHHHhHHhcCC-CcHHHHHHHHHHH
Q psy879 247 LYKL-GYAPEDIIGNIFRVAKTL--------D----------IPEPLKLSIIQEIGNVHLRISEGV-NSLLQLSGLLARL 306 (317)
Q Consensus 247 l~~~-~~~~~~i~~~~~~~~~~~--------~----------~~~~~~~~~~~~l~~~~~~l~~g~-~~~l~le~~~~~~ 306 (317)
|... |++|..|+..+.|++ .+ + .+.....++++.+.++|+++|+|. ++.+.+|.|+.++
T Consensus 230 Ll~~~ge~p~~ILall~rQf-l~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lElli~~~ 308 (311)
T PRK05907 230 LLSDMGEDPLGIIAFLRSQC-LYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVETLVIRM 308 (311)
T ss_pred HHHhcCCChHHHHHHHHHHH-HHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9999 999999999988876 32 1 234457789999999999999998 9999999999999
Q ss_pred HH
Q psy879 307 CI 308 (317)
Q Consensus 307 ~~ 308 (317)
|.
T Consensus 309 ~~ 310 (311)
T PRK05907 309 TN 310 (311)
T ss_pred hc
Confidence 84
No 68
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.95 E-value=3.3e-27 Score=191.80 Aligned_cols=166 Identities=27% Similarity=0.443 Sum_probs=139.7
Q ss_pred HHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCC-------------------CCceEEecC-CCCcChHHH
Q psy879 20 ERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF-------------------KDAVLELNA-SNDRGIDTV 78 (317)
Q Consensus 20 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~-------------------~~~~~~~~~-~~~~~~~~i 78 (317)
+.|.+.+.+++++| +||+||+|+|||++++.+++.+.|... ...+..+.. ....+.+++
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 45788889999988 999999999999999999999987410 011222222 123567888
Q ss_pred HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHH
Q psy879 79 RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDA 158 (317)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~ 158 (317)
++.+..+...+. .+.++|+||||+|.++.++++.|++++|++++++.+|++++++.++.++++|||..+.|.+++.+
T Consensus 82 ~~i~~~~~~~~~---~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~ 158 (188)
T TIGR00678 82 RELVEFLSRTPQ---ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEE 158 (188)
T ss_pred HHHHHHHccCcc---cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHH
Confidence 887777665553 37899999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q psy879 159 QLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQA 194 (317)
Q Consensus 159 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~ 194 (317)
++.+||.+. | +++++++.++..++||+|+|
T Consensus 159 ~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 159 ALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 999999886 4 78999999999999999864
No 69
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=1.3e-25 Score=195.32 Aligned_cols=277 Identities=17% Similarity=0.166 Sum_probs=191.9
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC--------------------CceEEecCC--
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK--------------------DAVLELNAS-- 70 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~--------------------~~~~~~~~~-- 70 (317)
.+....+.+... .++.|| |+|+||+|+|||++|+.+|+.+.|.... ..+..+.+.
T Consensus 5 W~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~ 82 (325)
T PRK08699 5 WHQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD 82 (325)
T ss_pred ccHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc
Confidence 456667777665 578888 9999999999999999999999875421 224445442
Q ss_pred --------CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchh
Q psy879 71 --------NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEP 142 (317)
Q Consensus 71 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (317)
...+++++|+........+.. +.++|+++|+++.|+...+++|++++|+|+.++.||++|+++..++++
T Consensus 83 ~~~~g~~~~~I~id~iR~l~~~~~~~p~~---~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 83 EPENGRKLLQIKIDAVREIIDNVYLTSVR---GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPT 159 (325)
T ss_pred cccccccCCCcCHHHHHHHHHHHhhCccc---CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHH
Confidence 135789999988777666533 789999999999999999999999999999889999999999999999
Q ss_pred HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCH
Q psy879 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHP 222 (317)
Q Consensus 143 i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~ 222 (317)
++|||+.+.|++++.+++..||.+. +. ++.. ..+ ..++|.+..+.+ .......+.+...+.....
T Consensus 160 i~SRc~~~~~~~~~~~~~~~~L~~~----~~--~~~~-~~l-~~~~g~p~~~~~-------~~~~~~r~~~~~~l~~~~~ 224 (325)
T PRK08699 160 IKSRCRKMVLPAPSHEEALAYLRER----GV--AEPE-ERL-AFHSGAPLFDEE-------PELRALRIKLLDILAEPRL 224 (325)
T ss_pred HHHHhhhhcCCCCCHHHHHHHHHhc----CC--CcHH-HHH-HHhCCChhhhcC-------chHHHHHHHHHHHHHccCh
Confidence 9999999999999999999999763 43 2321 222 456776643211 0000001112111122233
Q ss_pred HHHHHHHHHHhcCC--HHH----HHHHHHHHH--HcCCCHH---HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhc
Q psy879 223 LAVKEMLLNCVEGN--MKD----SYKIIHHLY--KLGYAPE---DIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291 (317)
Q Consensus 223 ~~i~~l~~~~~~~~--~~~----~~~~~~~l~--~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 291 (317)
..+..+.+.+...+ ... ...++.|++ +.+.... +....+..++. ..+.....++++.+.+....+..
T Consensus 225 ~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~~a~--~~~~~~L~~~~~~l~~~~~~l~~ 302 (325)
T PRK08699 225 LKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTAS--GFRPRNVFAAEDMLKQLAPYGFH 302 (325)
T ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHhhC
Confidence 34555555554422 333 444556663 2232211 11223334444 45666777889999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcc
Q psy879 292 GVNSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 292 g~~~~l~le~~~~~~~~~~~~ 312 (317)
|+|+++.+|.++.++.....-
T Consensus 303 n~n~~L~le~lll~~~~~~~~ 323 (325)
T PRK08699 303 TLNVKMQIEHLLINYLELKKE 323 (325)
T ss_pred CCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999876543
No 70
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=8.5e-26 Score=191.61 Aligned_cols=260 Identities=15% Similarity=0.198 Sum_probs=182.1
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------CceEEecCC-CC
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK-------------------DAVLELNAS-ND 72 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~-------------------~~~~~~~~~-~~ 72 (317)
.|+.+++.|..++.+|+++| |||+|| .||+++|+.+|+.+.|.... ..+..+.+. ..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 57889999999999999999 999996 68999999999999875421 123333332 24
Q ss_pred cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeee
Q psy879 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRY 152 (317)
Q Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f 152 (317)
.+++++|+....+...+. .+.++|+|||++|.|+..+.|+|+|++|+||+++.||++|++++.++|||+|||+.++|
T Consensus 84 I~idqIR~l~~~~~~~p~---~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f 160 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGY---EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF 160 (290)
T ss_pred CCHHHHHHHHHHHhhCcc---cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeC
Confidence 678999998888887764 37899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHH
Q psy879 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNC 232 (317)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~ 232 (317)
++ +.+++.+++.. +|+ +.+....++.. .|++..|+..++.- ... + . ...+..+.+.+
T Consensus 161 ~~-~~~~~~~~L~~----~g~--~~~~a~~la~~-~~s~~~A~~l~~~~----~~~--~-~--------~~~~~~~~~~l 217 (290)
T PRK07276 161 PK-NEAYLIQLLEQ----KGL--LKTQAELLAKL-AQSTSEAEKLAQNK----KFL--E-L--------IDQAERFVTIL 217 (290)
T ss_pred CC-cHHHHHHHHHH----cCC--ChHHHHHHHHH-CCCHHHHHHHhCCh----hHH--H-H--------HHHHHHHHHHh
Confidence 77 77777777754 354 44444444444 45899998876311 000 0 0 01122233323
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHH
Q psy879 233 VEGNMKDSYKIIHHLYKL---GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLL 303 (317)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~ 303 (317)
...+...++. +..+... .+.-..++..+..++.. ........+.+..+.+.+....+|+|....+|.|+
T Consensus 218 ~~~~~~~~l~-~~~l~~~~~~~e~q~~~l~~l~~~~~~-~~~~~~~~~~L~~~~~~r~~w~~Nv~~~~~le~l~ 289 (290)
T PRK07276 218 LKDKDEAYLQ-VARLVQLADEKEEQDQVLTLLTLLLAQ-ERMQVNVRTQLEAVYQARKMWQSNVSFQNALEYMV 289 (290)
T ss_pred ccChHHHHHH-HHHHHHhhhcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHhccCHHHHHHHHh
Confidence 3222222222 2333222 12222333333332311 22334456678889999999999999999999986
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.95 E-value=5.2e-26 Score=200.32 Aligned_cols=202 Identities=20% Similarity=0.281 Sum_probs=159.4
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHh-----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSS-----SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 76 (317)
.+|||++|++++||+++++.+..++. ++.++|++||||||+|||++++++|+.+.. .+...+........
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-----~~~~~~~~~~~~~~ 91 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSGPALEKPG 91 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecccccChH
Confidence 48999999999999999998877765 233457999999999999999999999732 12222222222222
Q ss_pred HHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCceEEEEecCCCc
Q psy879 77 TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------------NTTRFALACNNSEK 138 (317)
Q Consensus 77 ~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------------~~~~~il~~~~~~~ 138 (317)
.+...+... +.+.+++|||++.+....++.|+..++... +...+|++|+....
T Consensus 92 ~l~~~l~~l---------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~ 162 (328)
T PRK00080 92 DLAAILTNL---------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGL 162 (328)
T ss_pred HHHHHHHhc---------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCccc
Confidence 333322211 457799999999999888888888888542 23568888999899
Q ss_pred CchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-----CCCcccHHH
Q psy879 139 IIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAEY 212 (317)
Q Consensus 139 l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-----~~~~i~~~~ 212 (317)
+.++++|||.. +.|.+++.+++.+++...+...++.+++++++.++..++|++|.+.+.++.+.. +...|+.+.
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~ 242 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEI 242 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 99999999954 999999999999999999999999999999999999999999999999986432 346788887
Q ss_pred HHhhc
Q psy879 213 VFKVC 217 (317)
Q Consensus 213 v~~~~ 217 (317)
+..+.
T Consensus 243 v~~~l 247 (328)
T PRK00080 243 ADKAL 247 (328)
T ss_pred HHHHH
Confidence 76654
No 72
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.95 E-value=3.9e-27 Score=185.61 Aligned_cols=140 Identities=36% Similarity=0.605 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC------------------CceEEecCCC---
Q psy879 14 GNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------DAVLELNASN--- 71 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------~~~~~~~~~~--- 71 (317)
||+++++.|...++++++|| +||+||+|+||+++|+.+++.+.|.... ..+..+....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 89999999999999999999 8999999999999999999999876543 2344454443
Q ss_pred CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceee
Q psy879 72 DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLR 151 (317)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~ 151 (317)
..+.+++++....+...+. .+.++|+||||+|.|+.+++|+|+++||+||.++.||++|+++++++++|+|||+.++
T Consensus 81 ~i~i~~ir~i~~~~~~~~~---~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~ 157 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPS---EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIR 157 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-T---TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEE
T ss_pred hhhHHHHHHHHHHHHHHHh---cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEe
Confidence 4678999988777766653 3689999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy879 152 YNKLT 156 (317)
Q Consensus 152 f~~~~ 156 (317)
|++++
T Consensus 158 ~~~ls 162 (162)
T PF13177_consen 158 FRPLS 162 (162)
T ss_dssp E----
T ss_pred cCCCC
Confidence 99875
No 73
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.94 E-value=1.2e-24 Score=190.45 Aligned_cols=199 Identities=18% Similarity=0.264 Sum_probs=156.0
Q ss_pred CCCCcccCCHHHHHHHHHHHh-----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKVFSS-----SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
++|++++||+++++.|..++. .+.++|++|+||||+|||++++++++.+.. .+.............+.+.
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-----~~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-----NLKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeccchhcCchhHHHH
Confidence 579999999999999988886 355668999999999999999999998732 1222322222222333333
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCceEEEEecCCCcCchhH
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------------NTTRFALACNNSEKIIEPI 143 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------------~~~~~il~~~~~~~l~~~i 143 (317)
+... +...+++|||++.+.++.++.|+..+++.. +...+|.+|+.+..+.+++
T Consensus 76 l~~~---------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 76 LTNL---------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HHhc---------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHH
Confidence 2221 346799999999999999999988887432 2366888888888999999
Q ss_pred hhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-----CCCcccHHHHHhhc
Q psy879 144 QSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAEYVFKVC 217 (317)
Q Consensus 144 ~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-----~~~~i~~~~v~~~~ 217 (317)
+|||.. +.|.+++.+++.+++...+...++.+++++++.+++.++|++|.+.+.++.+.. +...|+.+.+..+.
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 999965 899999999999999999999999999999999999999999999999876532 34568888877655
Q ss_pred CC
Q psy879 218 DE 219 (317)
Q Consensus 218 ~~ 219 (317)
+.
T Consensus 227 ~~ 228 (305)
T TIGR00635 227 EM 228 (305)
T ss_pred HH
Confidence 43
No 74
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.94 E-value=4.8e-25 Score=180.35 Aligned_cols=198 Identities=19% Similarity=0.285 Sum_probs=158.2
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHh-----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSS-----SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT 77 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 77 (317)
..||++|++++||++++++|.-+++ +..+.|+|||||||.||||+|+.+|+++.. .+-...+.-.....+
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv-----n~k~tsGp~leK~gD 93 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV-----NLKITSGPALEKPGD 93 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC-----CeEecccccccChhh
Confidence 4689999999999999999877764 345679999999999999999999999731 122222222233444
Q ss_pred HHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCceEEEEecCCCcC
Q psy879 78 VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------------NTTRFALACNNSEKI 139 (317)
Q Consensus 78 i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------------~~~~~il~~~~~~~l 139 (317)
+...+... .++.|+||||++.+.+...+.|...||.+. +...+|.+|+....+
T Consensus 94 laaiLt~L---------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~l 164 (332)
T COG2255 94 LAAILTNL---------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGML 164 (332)
T ss_pred HHHHHhcC---------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccc
Confidence 44443322 467899999999999999999999999542 233478889999999
Q ss_pred chhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-----CCCcccHHHH
Q psy879 140 IEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAEYV 213 (317)
Q Consensus 140 ~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-----~~~~i~~~~v 213 (317)
..++++||.+ .++..|+.+|+..++..-+..-+++++++++..++.+|.|-+|-|..+|+..-. +...|+.+-.
T Consensus 165 t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia 244 (332)
T COG2255 165 TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDIA 244 (332)
T ss_pred cchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 9999999988 889999999999999999999999999999999999999999999999976432 4455655444
Q ss_pred H
Q psy879 214 F 214 (317)
Q Consensus 214 ~ 214 (317)
.
T Consensus 245 ~ 245 (332)
T COG2255 245 D 245 (332)
T ss_pred H
Confidence 3
No 75
>PRK07914 hypothetical protein; Reviewed
Probab=99.93 E-value=2.4e-23 Score=182.62 Aligned_cols=271 Identities=10% Similarity=0.099 Sum_probs=215.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcC-CC-CCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLG-PS-FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 109 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~ 109 (317)
|.|+|||+.-.........+.+.+.. .+ ....+..+++.+ .....+ ......++ .+++++|+++++..+.
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~-~~~~~i----~~~~t~pl---F~~rRlV~v~~~~~~~ 77 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGD-VSTYEL----AELLSPSL---FAEERVVVLEAAAEAG 77 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEecccc-CCHHHH----HHhcCCCC---CCCceEEEEeChHhcc
Confidence 45999999977777777777766543 22 233455555432 222222 22222232 2789999999998887
Q ss_pred HHHHHHHHHHhhhccCCceEEEEecCCC---cCchhHhhhc-ceeeecCC-CHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q psy879 110 DGAQQALRRTMEIYSNTTRFALACNNSE---KIIEPIQSRC-AMLRYNKL-TDAQLLSKVIEICEKENISHTNDGLEAIV 184 (317)
Q Consensus 110 ~~~~~~ll~~le~~~~~~~~il~~~~~~---~l~~~i~sR~-~~i~f~~~-~~~~~~~~l~~~~~~~~~~i~~~~~~~l~ 184 (317)
++..+.|..+++.+++.+++|++++... ++.++++... .++.|.++ ++.++..|+.++++..|+.+++++++.++
T Consensus 78 ~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~ 157 (320)
T PRK07914 78 KDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALL 157 (320)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7778899999999999888888765432 3456777765 47899998 99999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy879 185 FTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR 263 (317)
Q Consensus 185 ~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 263 (317)
...++|+..+.+++++.+. ..+.||.++|.+++..+.+.++|++++++..++..+|+.++++|...|++|..|+..+.+
T Consensus 158 ~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~il~~l~~ 237 (320)
T PRK07914 158 DAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVVLADALAE 237 (320)
T ss_pred HHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 9999999999999999765 457899999999999999999999999999999999999999999999999999877655
Q ss_pred HHHhc-----------------CC---------------ChHHHHHHHHHHHHHHhHHhcCC-CcHHHHHHHHHHHHHhh
Q psy879 264 VAKTL-----------------DI---------------PEPLKLSIIQEIGNVHLRISEGV-NSLLQLSGLLARLCIVG 310 (317)
Q Consensus 264 ~~~~~-----------------~~---------------~~~~~~~~~~~l~~~~~~l~~g~-~~~l~le~~~~~~~~~~ 310 (317)
+++.+ +. +.....+++..+.++|..+|+|. +++++||.++.++|+..
T Consensus 238 ~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i~~~~~~~ 317 (320)
T PRK07914 238 AVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAVRRVAELV 317 (320)
T ss_pred HHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Confidence 43322 11 11122339999999999999886 99999999999999854
No 76
>KOG1969|consensus
Probab=99.93 E-value=4.5e-24 Score=193.95 Aligned_cols=202 Identities=26% Similarity=0.476 Sum_probs=171.5
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhc--------------------------------CCCce--EEEECCCCCCHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSS--------------------------------GNVPN--IIISGPPGVGKTT 46 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~--~ll~G~~G~GKt~ 46 (317)
++||+|+.|.|++|.+.+-+.+..|++. ++++. +||+||||.||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 5899999999999999888877766541 23333 8999999999999
Q ss_pred HHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccC-CCCceeEEEEeCCCCCCHHHHHHHHHHhhh---
Q psy879 47 TILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL-PPGRHKIVILDEADSMTDGAQQALRRTMEI--- 122 (317)
Q Consensus 47 la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~vliiDE~d~l~~~~~~~ll~~le~--- 122 (317)
+|+.+|+.. ++.++++|+++++....+.+.+..+.+....+ ..+.+.++||||+|...+.+.+.++..++.
T Consensus 342 LAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k 416 (877)
T KOG1969|consen 342 LAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNK 416 (877)
T ss_pred HHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcc
Confidence 999999983 67799999999999999999888877765544 457899999999999999999999998871
Q ss_pred ---ccC---------------CceEEEEecCCC-cCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q psy879 123 ---YSN---------------TTRFALACNNSE-KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAI 183 (317)
Q Consensus 123 ---~~~---------------~~~~il~~~~~~-~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l 183 (317)
.+. .-.+|++||+.. --+..++--+.++.|.++++..+.++|+.+|..+|+.++..++..+
T Consensus 417 ~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L 496 (877)
T KOG1969|consen 417 QATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNAL 496 (877)
T ss_pred hhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHH
Confidence 111 134899999864 4567778888999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHhhhCCCc
Q psy879 184 VFTAQGDMRQALNNLQSTHNGFGH 207 (317)
Q Consensus 184 ~~~~~gd~r~~i~~l~~~~~~~~~ 207 (317)
++.+.+|+|.+||.||.++...+.
T Consensus 497 ~el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 497 CELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHhcchHHHHHHHHHHHHHhccc
Confidence 999999999999999998875444
No 77
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.93 E-value=8.1e-24 Score=197.28 Aligned_cols=293 Identities=15% Similarity=0.152 Sum_probs=207.9
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHH----hcCCCce-EEEECCCCCCHHHHHHHHHHHHcCC----C-CCCceEEecCCCC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFS----SSGNVPN-IIISGPPGVGKTTTILCLARILLGP----S-FKDAVLELNASND 72 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l----~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~----~-~~~~~~~~~~~~~ 72 (317)
-|.| +.+.|+++.++.|..++ .+..+.+ ++|+|+||||||++++.+.+.+... . ....++++||...
T Consensus 751 DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 751 DVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred ccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4677 56789988777765554 4334334 5799999999999999999887421 1 1245678888653
Q ss_pred cChHHHHHHHH-HH------------------HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc---cCCceEE
Q psy879 73 RGIDTVRNKIK-MF------------------AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY---SNTTRFA 130 (317)
Q Consensus 73 ~~~~~i~~~~~-~~------------------~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~---~~~~~~i 130 (317)
.....+...+. .+ .... ........||||||+|.|....+..|+.+++.+ ...+.+|
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L-~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN-KKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh-hcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 43332222111 11 1000 001123458999999999887778888777743 3346677
Q ss_pred EEecC---CCcCchhHhhhcce--eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---hcCCCHHHHHHHHHHhh
Q psy879 131 LACNN---SEKIIEPIQSRCAM--LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVF---TAQGDMRQALNNLQSTH 202 (317)
Q Consensus 131 l~~~~---~~~l~~~i~sR~~~--i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~~~gd~r~~i~~l~~~~ 202 (317)
+++|. +..+++.++||+.. +.|+||+.+|+.++|..++......+++++++++++ ..+||+|+|+++|+.++
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 78876 35778999999976 999999999999999999986544589999999987 67899999999999877
Q ss_pred h--CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHH----hcCCChH
Q psy879 203 N--GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL---GYAPEDIIGNIFRVAK----TLDIPEP 273 (317)
Q Consensus 203 ~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~~~~~~~~~----~~~~~~~ 273 (317)
. +...|+.++|.++........+.+.+..+..+...-.++++..+... ..+..+|+..|..+|+ .++..+.
T Consensus 987 EikegskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~pl 1066 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSN 1066 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCc
Confidence 5 34579999999988776666667777766655555555555554332 3677899999999998 5677777
Q ss_pred HHHHHHHHHHHHHhHHhcCC---CcHHHHHHHH
Q psy879 274 LKLSIIQEIGNVHLRISEGV---NSLLQLSGLL 303 (317)
Q Consensus 274 ~~~~~~~~l~~~~~~l~~g~---~~~l~le~~~ 303 (317)
.. ++.+.+.+++.. |. .|.+-||.+.
T Consensus 1067 Tq-RV~d~L~eL~~L---GIIl~ep~~~~~~~~ 1095 (1164)
T PTZ00112 1067 NE-LFKIMLDKLVKM---GILLIRPYIPLESLA 1095 (1164)
T ss_pred HH-HHHHHHHHHHhc---CeEEecCCCchhhhh
Confidence 77 888888888764 44 6666666543
No 78
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.93 E-value=7.1e-25 Score=203.22 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=166.4
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-----CCCCceEEecCCCCc-C
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-----SFKDAVLELNASNDR-G 74 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~-----~~~~~~~~~~~~~~~-~ 74 (317)
.+||||++|++++||++.++.+...+..+...|++|+||||||||++|+++.+..... .....++++++.... .
T Consensus 56 ~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 56 SEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred HHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 3799999999999999999999988877777789999999999999999998764211 113467777764311 1
Q ss_pred hHHHH-HHHHH----HHh-------------hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------
Q psy879 75 IDTVR-NKIKM----FAQ-------------QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY------------- 123 (317)
Q Consensus 75 ~~~i~-~~~~~----~~~-------------~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~------------- 123 (317)
...+. ..++. ..+ .+........++++|||++.|++..|+.|++.||+.
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 10111 01100 000 000111245689999999999999999999999852
Q ss_pred ---------------cCCceEEEEe-cCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy879 124 ---------------SNTTRFALAC-NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTA 187 (317)
Q Consensus 124 ---------------~~~~~~il~~-~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 187 (317)
+.++++|++| +++..++++++|||..+.|++++.+++..+++..+++.++.+++++++.+...+
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~ 295 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA 295 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh
Confidence 1234566554 567899999999999999999999999999999999999999999999887766
Q ss_pred CCCHHHHHHHHHHhhh-----CCCcccHHHHHhhcCCCC
Q psy879 188 QGDMRQALNNLQSTHN-----GFGHVTAEYVFKVCDEPH 221 (317)
Q Consensus 188 ~gd~r~~i~~l~~~~~-----~~~~i~~~~v~~~~~~~~ 221 (317)
. |.|++.+.++.++. +...|+.+++..++....
T Consensus 296 ~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 296 S-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred h-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 5 89999999988653 334799999988877543
No 79
>PRK05629 hypothetical protein; Validated
Probab=99.93 E-value=5.3e-23 Score=180.38 Aligned_cols=270 Identities=11% Similarity=0.110 Sum_probs=212.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCC-CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSF-KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 110 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 110 (317)
|.|+|||+.-.-.......+.+.+..... ...+..+++.+ .....+.+ ....++ .+++++|++++++...+
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e-~~~~~l~~----~~t~sl---F~~~rlV~v~~~~~~~~ 78 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASE-VSQGELLD----ALSPSL---FGEDRVIVLTNMEQAGK 78 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeeccc-CCHHHHHH----hhCcCc---cCCceEEEEeChHhcCh
Confidence 45999999865555555556655543332 33455555432 23333332 222332 27889999999888766
Q ss_pred HHHHHHHHHhhhccCCceEEEEecCCC---cCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy879 111 GAQQALRRTMEIYSNTTRFALACNNSE---KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTA 187 (317)
Q Consensus 111 ~~~~~ll~~le~~~~~~~~il~~~~~~---~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 187 (317)
...+.++.++..+++.+++|+++.... ++.+.++..+..++|.++.+.++..|+.+++++.|+.+++++++.++..+
T Consensus 79 ~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~ 158 (318)
T PRK05629 79 EPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGV 158 (318)
T ss_pred hHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 677889999999999988888876433 35567888899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy879 188 QGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAK 266 (317)
Q Consensus 188 ~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 266 (317)
++|+..+.+++++.+. ..+.||.++|.+++....+..+|++++++..++...|+.++++|+..|++|..|+..+.+.+.
T Consensus 159 g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~~l~~~~r 238 (318)
T PRK05629 159 GSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALAAALSMKVG 238 (318)
T ss_pred CccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999998764 356899999999999999999999999999999999999999999999999999777654321
Q ss_pred h---c----C------------CC---------------hHHHHHHHHHHHHHHhHHhcCC-CcHHHHHHHHHHHHHh
Q psy879 267 T---L----D------------IP---------------EPLKLSIIQEIGNVHLRISEGV-NSLLQLSGLLARLCIV 309 (317)
Q Consensus 267 ~---~----~------------~~---------------~~~~~~~~~~l~~~~~~l~~g~-~~~l~le~~~~~~~~~ 309 (317)
. + + +. .....+++..+.++|..+|+|. ++.+.||.++.++++.
T Consensus 239 ~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~~~~~~ 316 (318)
T PRK05629 239 QIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQGGDPEFAIESAVRRVAEL 316 (318)
T ss_pred HHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 1 1 1 11 1112228899999999999876 9999999999999864
No 80
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.92 E-value=1.7e-22 Score=178.24 Aligned_cols=271 Identities=15% Similarity=0.193 Sum_probs=210.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCC-CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCC--
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSF-KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM-- 108 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l-- 108 (317)
|.|+|||+...-+...+..+.+.+..+.. ...+..+++.+ .+.+.+.+......++ .+++++|++++++.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~---~~~~~~~~~~~~t~pf---f~~~rlVvv~~~~~~~~ 75 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDD---ADQAIQALNEAMTPPF---GSGGRLVWLKNSPLCQG 75 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCcc---chHHHHHHHHhcCCCC---CCCceEEEEeCchhhcc
Confidence 57999999988888888888877644322 22333333322 2223344443333332 278999999998765
Q ss_pred -CHHHHHHHHHHhhhccCCceEEEEec-CCC---cCchhHhhhcceeeecCC---CHHHHHHHHHHHHHHcCCCCCHHHH
Q psy879 109 -TDGAQQALRRTMEIYSNTTRFALACN-NSE---KIIEPIQSRCAMLRYNKL---TDAQLLSKVIEICEKENISHTNDGL 180 (317)
Q Consensus 109 -~~~~~~~ll~~le~~~~~~~~il~~~-~~~---~l~~~i~sR~~~i~f~~~---~~~~~~~~l~~~~~~~~~~i~~~~~ 180 (317)
..+..+.|.++++.+++++++|+++. ..+ +..+.+.+.+.+..|.++ +.+++.+|+.+++++.|+.++++++
T Consensus 76 ~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~ 155 (326)
T PRK07452 76 CSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAA 155 (326)
T ss_pred CCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 56678899999999999998888753 332 456778888888888765 4577999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Q psy879 181 EAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPED 256 (317)
Q Consensus 181 ~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (317)
+.++..+++|++.+.+++++.+. +.+.|+.++|.+++... +..+|++++++..++...|+.+++.|...|++|..
T Consensus 156 ~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~~~g~~p~~ 234 (326)
T PRK07452 156 ELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLLDANEPALR 234 (326)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHH
Confidence 99999999999999999999765 24579999999998876 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---------------------cCCC-h---------------HHHHHHHHHHHHHHhHHhcCCCcHHHH
Q psy879 257 IIGNIFRVAKT---------------------LDIP-E---------------PLKLSIIQEIGNVHLRISEGVNSLLQL 299 (317)
Q Consensus 257 i~~~~~~~~~~---------------------~~~~-~---------------~~~~~~~~~l~~~~~~l~~g~~~~l~l 299 (317)
|+..+.+.++. +++. + ....+++..+.++|.++|+|.++...|
T Consensus 235 il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D~~iK~g~~~~~~l 314 (326)
T PRK07452 235 IVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQGANPINAL 314 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 98876543322 1221 1 012228999999999999999888899
Q ss_pred HHHHHHHHHh
Q psy879 300 SGLLARLCIV 309 (317)
Q Consensus 300 e~~~~~~~~~ 309 (317)
|.++.++|..
T Consensus 315 e~~i~~~~~~ 324 (326)
T PRK07452 315 QDKLIELCQL 324 (326)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 81
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.92 E-value=7.1e-22 Score=175.46 Aligned_cols=283 Identities=13% Similarity=0.137 Sum_probs=214.0
Q ss_pred HHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCcee
Q psy879 22 LKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSF-KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHK 98 (317)
Q Consensus 22 l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 98 (317)
+...+.+ +..|.|+|||+........+..+.+.+..... ...+..+.... .. .++.+.+......+++ ++++
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e-~~-~~~~~~~~~~~t~slF---~~~r 83 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDD-LD-ADPARLEDEANAISLF---GGRR 83 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHH-hh-cCHHHHHHHHhCCCCC---CCce
Confidence 3444443 35667999999998888888888887654321 12233333221 11 0123334444444433 7889
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC---cCchhHh--hhcceeeecCCCHHHHHHHHHHHHHHcCC
Q psy879 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE---KIIEPIQ--SRCAMLRYNKLTDAQLLSKVIEICEKENI 173 (317)
Q Consensus 99 vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~---~l~~~i~--sR~~~i~f~~~~~~~~~~~l~~~~~~~~~ 173 (317)
+|++.+++ +...+.|..+++.+++.+++|+.+...+ ++.+.+. ..+..+.|.++++.++..|+.++++..|+
T Consensus 84 lViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 160 (343)
T PRK06585 84 LIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGL 160 (343)
T ss_pred EEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCC
Confidence 99999654 3455678899999888888888765432 2334332 23455899999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHhhh---CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy879 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHN---GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL 250 (317)
Q Consensus 174 ~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~---~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 250 (317)
.+++++++.++..++||++.+.+++++.+. +.+.||.++|.+++....+..+|++++++..++...++.+++.|+..
T Consensus 161 ~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll~~ 240 (343)
T PRK06585 161 RITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRALAE 240 (343)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999998765 34689999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCCh----------------------------HHHHHHHHHHHHHHhHHhcCC
Q psy879 251 GYAPEDIIGNIFRVAKTL---------DIPE----------------------------PLKLSIIQEIGNVHLRISEGV 293 (317)
Q Consensus 251 ~~~~~~i~~~~~~~~~~~---------~~~~----------------------------~~~~~~~~~l~~~~~~l~~g~ 293 (317)
|++|..|+..+.+.++.+ |.+. ....+++..+.++|..+|+|.
T Consensus 241 g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~ 320 (343)
T PRK06585 241 GTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAELDCRRNP 320 (343)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999988875543322 2111 112228999999999999888
Q ss_pred -CcHHHHHHHHHHHHHhhcc
Q psy879 294 -NSLLQLSGLLARLCIVGSK 312 (317)
Q Consensus 294 -~~~l~le~~~~~~~~~~~~ 312 (317)
++.+.+|.++.++|.....
T Consensus 321 ~~~~~~le~~i~~~~~~~~~ 340 (343)
T PRK06585 321 ALADAIARRVLLSIAVRARR 340 (343)
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 8999999999999975443
No 82
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=6.3e-23 Score=169.63 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=128.9
Q ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCC-----------------ceEEecC-CCCcChHHHHHHHHHHHhhcc
Q psy879 30 NVPN-IIISGPPGVGKTTTILCLARILLGPSFKD-----------------AVLELNA-SNDRGIDTVRNKIKMFAQQKV 90 (317)
Q Consensus 30 ~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~-----------------~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 90 (317)
.+|| +||+||+|+||..+|.++|+.+.|..... .+..+.+ ....+++++++....+...+.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3467 99999999999999999999998864221 1222222 234678899988877765431
Q ss_pred cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCC----------CHHHH
Q psy879 91 TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL----------TDAQL 160 (317)
Q Consensus 91 ~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~----------~~~~~ 160 (317)
. .++++|+||+++|+|+..+.|+|++++||||+++.||++|++++.+++||+|||+.+.|+++ ++.++
T Consensus 85 e--~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i 162 (261)
T PRK05818 85 E--SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYF 162 (261)
T ss_pred h--cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHH
Confidence 1 25799999999999999999999999999999999999999999999999999999999998 56666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q psy879 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201 (317)
Q Consensus 161 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~ 201 (317)
.+.+.... .+++ .++..++|++.+++..++..
T Consensus 163 ~~~L~~~~-----~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 163 QYILLSFY-----SVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHHHHcc-----CccH----HHHHHcCCCHHHHHHHHHHH
Confidence 66655532 2443 67788999999999998854
No 83
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.92 E-value=8.2e-22 Score=173.38 Aligned_cols=280 Identities=13% Similarity=0.148 Sum_probs=214.7
Q ss_pred HHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCcee
Q psy879 20 ERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHK 98 (317)
Q Consensus 20 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 98 (317)
+.+...+++|.+++ |+|||+.-.-.......+.+.+.+...... +..+ ..+. .+.+......++. ++++
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~-~~~~---~~~~---~~i~~~~~t~plF---~~~r 73 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKT-LYFD---EYDF---EQAKDFLSQSSLF---GGKN 73 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhh-hchh---hccH---HHHHHHHhccccc---CCce
Confidence 35677788887755 999999988888888888877643322111 2222 1223 3344444444433 7899
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC---cCchhHhhh--cceeeecCCCHHHHHHHHHHHHHHcCC
Q psy879 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE---KIIEPIQSR--CAMLRYNKLTDAQLLSKVIEICEKENI 173 (317)
Q Consensus 99 vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~---~l~~~i~sR--~~~i~f~~~~~~~~~~~l~~~~~~~~~ 173 (317)
+|++.++..+.......|..+++.+++.+++|++..... ++.+.+... +..+.|.++++.++..|+.+++++.|+
T Consensus 74 lViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 153 (328)
T PRK08487 74 LLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELGL 153 (328)
T ss_pred EEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 999998877777777899999999888777776544333 122333322 556999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q psy879 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYA 253 (317)
Q Consensus 174 ~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (317)
.+++++++.++..+++|+..+.+++++...-.+.||.++|.+++..+.+..+|++++++..++ .++.++++|...|++
T Consensus 154 ~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~~L~~~g~~ 231 (328)
T PRK08487 154 DIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLEKLLEEGFN 231 (328)
T ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHHHHHHCCCC
Confidence 999999999999999999999999999877555899999999999999999999999999888 588899999999999
Q ss_pred HHHHHHHHHHHHHhc-------------------CCCh-----------------HHHHHHHHHHHHHHhHHhcCC--Cc
Q psy879 254 PEDIIGNIFRVAKTL-------------------DIPE-----------------PLKLSIIQEIGNVHLRISEGV--NS 295 (317)
Q Consensus 254 ~~~i~~~~~~~~~~~-------------------~~~~-----------------~~~~~~~~~l~~~~~~l~~g~--~~ 295 (317)
|..|+..+.+++..+ ++.+ ....+++..|.++|..+|+|. +.
T Consensus 232 pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~lK~g~~~~~ 311 (328)
T PRK08487 232 EIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELELKTGQKIDK 311 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCccH
Confidence 999988876543322 2211 112228999999999999996 77
Q ss_pred HHHHHHHHHHHHHhhc
Q psy879 296 LLQLSGLLARLCIVGS 311 (317)
Q Consensus 296 ~l~le~~~~~~~~~~~ 311 (317)
.+.+|..++++.++.+
T Consensus 312 ~~~~~~~~~~~~~~~~ 327 (328)
T PRK08487 312 NLFLLSTLIKIQKILN 327 (328)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8899999999987653
No 84
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.91 E-value=4.5e-22 Score=180.34 Aligned_cols=277 Identities=18% Similarity=0.180 Sum_probs=190.3
Q ss_pred CcccCCHHHHHHHHHHH----hcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH-HHHHHH
Q psy879 10 SDIVGNEDTVERLKVFS----SSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV-RNKIKM 84 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 84 (317)
+.++|++..++.|...+ .++.+++++++||||+|||++++.+++.+........++.+++....+...+ ......
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 56889988877766665 4445567999999999999999999998754433455677776543332111 111111
Q ss_pred HHhhc-----------------ccCCCCceeEEEEeCCCCCC----HHHHHHHHHHhhhccC-CceEEEEecCCC---cC
Q psy879 85 FAQQK-----------------VTLPPGRHKIVILDEADSMT----DGAQQALRRTMEIYSN-TTRFALACNNSE---KI 139 (317)
Q Consensus 85 ~~~~~-----------------~~~~~~~~~vliiDE~d~l~----~~~~~~ll~~le~~~~-~~~~il~~~~~~---~l 139 (317)
+...+ .....+.+.||+|||+|.+. .+....|++.++..+. +..+|+++++.. .+
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 11000 00011345789999999986 3445666666655443 566888888763 56
Q ss_pred chhHhhhcc--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHhhh-----CCCc
Q psy879 140 IEPIQSRCA--MLRYNKLTDAQLLSKVIEICEKE--NISHTNDGLEAIVFTA---QGDMRQALNNLQSTHN-----GFGH 207 (317)
Q Consensus 140 ~~~i~sR~~--~i~f~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~---~gd~r~~i~~l~~~~~-----~~~~ 207 (317)
.+.+++|+. .+.|+|++.+++.+++..++... ...+++++++.+++.+ .||+|.+++.+..++. +...
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~ 269 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRK 269 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 788888874 49999999999999999988653 2357899999988777 8999999999976542 4467
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy879 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYK---LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284 (317)
Q Consensus 208 i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (317)
|+.+++..+.+..........+..+...+..-...+ ..+.. ...+..+++..|..+|+.++.++....++.+.+.+
T Consensus 270 I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai-~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~ 348 (394)
T PRK00411 270 VTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAI-VRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINK 348 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 999999988877655455555555554433333333 33322 34678899999999999888888666777777776
Q ss_pred HHh
Q psy879 285 VHL 287 (317)
Q Consensus 285 ~~~ 287 (317)
++.
T Consensus 349 L~~ 351 (394)
T PRK00411 349 LDM 351 (394)
T ss_pred HHh
Confidence 654
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.91 E-value=4e-22 Score=178.87 Aligned_cols=282 Identities=16% Similarity=0.159 Sum_probs=185.9
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC----CCceEEecCCCCc
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSS----SGNVPNIIISGPPGVGKTTTILCLARILLGPSF----KDAVLELNASNDR 73 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~----~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~~ 73 (317)
..|.|. +++|++..++.|..++. ++..++++++||||+|||++++.+++.+..... ...++++++....
T Consensus 10 ~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 10 PDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 468884 68899998887776665 345556999999999999999999998743211 1456677765433
Q ss_pred ChHH-HHHHHHHHHh--hc-----------------ccCCCCceeEEEEeCCCCCCHHH---HHHHHHH--hhhcc-CCc
Q psy879 74 GIDT-VRNKIKMFAQ--QK-----------------VTLPPGRHKIVILDEADSMTDGA---QQALRRT--MEIYS-NTT 127 (317)
Q Consensus 74 ~~~~-i~~~~~~~~~--~~-----------------~~~~~~~~~vliiDE~d~l~~~~---~~~ll~~--le~~~-~~~ 127 (317)
+... +......+.. .. .....+.+.||+|||+|.+.... ...|+++ ..+.+ .++
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 3222 2222222210 00 00012346789999999995332 3344444 22222 567
Q ss_pred eEEEEecCCC---cCchhHhhhcc--eeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHH---HhcCCCHHHHHHH
Q psy879 128 RFALACNNSE---KIIEPIQSRCA--MLRYNKLTDAQLLSKVIEICEK--ENISHTNDGLEAIV---FTAQGDMRQALNN 197 (317)
Q Consensus 128 ~~il~~~~~~---~l~~~i~sR~~--~i~f~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~---~~~~gd~r~~i~~ 197 (317)
.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++.+++..++.. .+..+++++++.++ ..+.||+|.+++.
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 7888998764 57888999985 5999999999999999999863 22347788776654 4567999999999
Q ss_pred HHHhhh-----CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcC
Q psy879 198 LQSTHN-----GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL---GYAPEDIIGNIFRVAKTLD 269 (317)
Q Consensus 198 l~~~~~-----~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~ 269 (317)
++.++. +...|+.+++..+.+........+.+..+.. .....+..+..+... .....+++..|...++..+
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 325 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIG 325 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcC
Confidence 987543 3457999999987776543333333333221 122234444444432 3567788888888888888
Q ss_pred CChHHHHHHHHHHHHHHh
Q psy879 270 IPEPLKLSIIQEIGNVHL 287 (317)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~ 287 (317)
..+....++.+.+.+++.
T Consensus 326 ~~~~~~~~~~~~l~~l~~ 343 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDM 343 (365)
T ss_pred CCCCcHHHHHHHHHHHHh
Confidence 888777888887777654
No 86
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.91 E-value=4.2e-21 Score=170.65 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=208.8
Q ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-CCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeE
Q psy879 21 RLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKI 99 (317)
Q Consensus 21 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 99 (317)
.+...++++-.+.|+|||+.-.-+...+..+.+...... ....+..+++.. ...+.+ +......++. +++++
T Consensus 7 ~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~-~~~~~l---~~~~~t~~lF---~~~kl 79 (340)
T PRK05574 7 QLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSE-TDWDDV---LEACQSLPLF---SDRKL 79 (340)
T ss_pred HHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCC-CCHHHH---HHHhhccCcc---ccCeE
Confidence 355566666333499999996556666666666543222 223344444432 233333 3333333333 68999
Q ss_pred EEEeCCCCCCHHH----HHHHHHHhhhccCC--ceEEEEecCCC---cC---chhHhhhcceeeecCCCHHHHHHHHHHH
Q psy879 100 VILDEADSMTDGA----QQALRRTMEIYSNT--TRFALACNNSE---KI---IEPIQSRCAMLRYNKLTDAQLLSKVIEI 167 (317)
Q Consensus 100 liiDE~d~l~~~~----~~~ll~~le~~~~~--~~~il~~~~~~---~l---~~~i~sR~~~i~f~~~~~~~~~~~l~~~ 167 (317)
|+|++++.+.... ...+..++ +++++ .++++.++..+ ++ .+++.+++..+.|.+++..++..|+...
T Consensus 80 vii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~ 158 (340)
T PRK05574 80 VELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQR 158 (340)
T ss_pred EEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 9999999986652 33444555 44443 34444444332 33 6788889999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh--CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHH
Q psy879 168 CEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIH 245 (317)
Q Consensus 168 ~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 245 (317)
++..|+.+++++++.++..++||++.+.+++++.+. +.+.||.++|.+++....+..++++++++..++...++..++
T Consensus 159 ~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~l~ 238 (340)
T PRK05574 159 LKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRILD 238 (340)
T ss_pred HHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999765 334499999999999988899999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhc---------CC--------------------------ChHHHHHHHHHHHHHHhHHh
Q psy879 246 HLYKLGYAPEDIIGNIFRVAKTL---------DI--------------------------PEPLKLSIIQEIGNVHLRIS 290 (317)
Q Consensus 246 ~l~~~~~~~~~i~~~~~~~~~~~---------~~--------------------------~~~~~~~~~~~l~~~~~~l~ 290 (317)
.+...|.+|..|+..+.+.+..+ |. +.....+++..+.++|.++|
T Consensus 239 ~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L~~~d~~iK 318 (340)
T PRK05574 239 GLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLLAETDYQIK 318 (340)
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988865543221 21 11223338999999999999
Q ss_pred cCC--CcHHHHHHHHHHHHHh
Q psy879 291 EGV--NSLLQLSGLLARLCIV 309 (317)
Q Consensus 291 ~g~--~~~l~le~~~~~~~~~ 309 (317)
+|. ++.+.||.++.++|.+
T Consensus 319 ~~~~~~~~~~le~~ii~l~~~ 339 (340)
T PRK05574 319 TGYGGDKWLELELLLLKLAGA 339 (340)
T ss_pred CCCCCCHHHHHHHHHHHhccC
Confidence 994 9999999999999964
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-21 Score=171.21 Aligned_cols=277 Identities=21% Similarity=0.227 Sum_probs=197.4
Q ss_pred ccCCCCCCcccCCHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 3 KYRPQTFSDIVGNEDTVER----LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
-|-|.. +.+++..++. |..++.++.+.|+++|||||||||++++.+++++........++++||....+..++
T Consensus 13 ~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 13 DYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred CCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 355643 6777776665 455666777777999999999999999999999976655555788888765555444
Q ss_pred HHHH-HHHHhhccc---------------CCCCceeEEEEeCCCCCCHHHHHHHHHHhh---hccCCceEEEEecCC---
Q psy879 79 RNKI-KMFAQQKVT---------------LPPGRHKIVILDEADSMTDGAQQALRRTME---IYSNTTRFALACNNS--- 136 (317)
Q Consensus 79 ~~~~-~~~~~~~~~---------------~~~~~~~vliiDE~d~l~~~~~~~ll~~le---~~~~~~~~il~~~~~--- 136 (317)
...+ ..+...+.. ...+..-||++||+|.|.....+.|+.++. +....+.+|+++|..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 3322 222111110 011457799999999998775555555554 333345677778775
Q ss_pred CcCchhHhhhcce--eeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHH---HhcCCCHHHHHHHHHHhhh-----C
Q psy879 137 EKIIEPIQSRCAM--LRYNKLTDAQLLSKVIEICEK--ENISHTNDGLEAIV---FTAQGDMRQALNNLQSTHN-----G 204 (317)
Q Consensus 137 ~~l~~~i~sR~~~--i~f~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~---~~~~gd~r~~i~~l~~~~~-----~ 204 (317)
..+.+.++|++.. +.|+||+.+|+.++|..+++. ..-.+++++++.++ ...+||.|.|+++|+.++. +
T Consensus 170 ~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 170 DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 3688999999887 789999999999999999874 23347787776665 5568899999999998765 5
Q ss_pred CCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy879 205 FGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284 (317)
Q Consensus 205 ~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (317)
...++.+++.++..........+.++.+..++....+.+..-. ...++..++..+...++.++. ...++.+++.+
T Consensus 250 ~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~---~~~~~~~ii~~ 324 (366)
T COG1474 250 SRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT---SQRRFSDIISE 324 (366)
T ss_pred CCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc---hHHHHHHHHHH
Confidence 6789999999996666666666666666555444433333222 678899999999999987666 56677777777
Q ss_pred HHh
Q psy879 285 VHL 287 (317)
Q Consensus 285 ~~~ 287 (317)
++.
T Consensus 325 L~~ 327 (366)
T COG1474 325 LEG 327 (366)
T ss_pred HHh
Confidence 654
No 88
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.90 E-value=7.4e-21 Score=166.32 Aligned_cols=253 Identities=15% Similarity=0.191 Sum_probs=197.1
Q ss_pred HHHHHHHHcCCCC-CCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-HHHHHHHHHhhhccC
Q psy879 48 ILCLARILLGPSF-KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-GAQQALRRTMEIYSN 125 (317)
Q Consensus 48 a~~la~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-~~~~~ll~~le~~~~ 125 (317)
+..+++.+....+ ...+..+++. +...+.+. ......++. +++++++|++++.+.. ...+.|.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~l~---~~~~~~slf---~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~ 76 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGE-EFDWNQLL---EEAQTLPLF---SERRLVELRNPEGKPGAKGLKALEEYLANPPP 76 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccC-CCCHHHHH---HHhhccCcc---cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCC
Confidence 4445555433322 3344555443 34444433 333333322 6789999999999874 567899999999999
Q ss_pred CceEEEEecCCCc---CchhHh--hhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy879 126 TTRFALACNNSEK---IIEPIQ--SRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQS 200 (317)
Q Consensus 126 ~~~~il~~~~~~~---l~~~i~--sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~ 200 (317)
++.+|++++..+. +.+.+. ++|..+.|.+++..++..|+...++++|+.+++++++.++..++||++.+.+++++
T Consensus 77 ~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~K 156 (302)
T TIGR01128 77 DTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEK 156 (302)
T ss_pred CEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9988888875442 223344 49999999999999999999999999999999999999999999999999999998
Q ss_pred hhh--CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------C
Q psy879 201 THN--GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL---------D 269 (317)
Q Consensus 201 ~~~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~---------~ 269 (317)
.+. +.+.|+.++|..++....+..++++++++..++...++..++.+...|++|..|+..+.+.+..+ +
T Consensus 157 L~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~ 236 (302)
T TIGR01128 157 LALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQG 236 (302)
T ss_pred HHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 765 34579999999999988888999999999999999999999999999999998888865543222 2
Q ss_pred CC--------------------------hHHHHHHHHHHHHHHhHHh-cCC-CcHHHHHHHHHHHH
Q psy879 270 IP--------------------------EPLKLSIIQEIGNVHLRIS-EGV-NSLLQLSGLLARLC 307 (317)
Q Consensus 270 ~~--------------------------~~~~~~~~~~l~~~~~~l~-~g~-~~~l~le~~~~~~~ 307 (317)
.+ .....+++..+.++|..+| +|. ++.+.||.++.++|
T Consensus 237 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 237 GPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred CCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 11 1122338999999999999 455 99999999999987
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.89 E-value=1.3e-21 Score=163.97 Aligned_cols=197 Identities=14% Similarity=0.143 Sum_probs=145.2
Q ss_pred CCCccc--CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHH
Q psy879 8 TFSDIV--GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF 85 (317)
Q Consensus 8 ~~~~~~--g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 85 (317)
+|++++ ++..+...+..+......++++||||+|+|||++++++++.+........++..+.... ...+.+..+
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----~~~~~~~~~ 95 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----FVPEVLEGM 95 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh----hhHHHHHHh
Confidence 588888 47778888888877666667999999999999999999998754332223333322110 111112211
Q ss_pred HhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhc--cCCceEEEEecCC-C---cCchhHhhhc---ceeeecC
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIY--SNTTRFALACNNS-E---KIIEPIQSRC---AMLRYNK 154 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~--~~~~~~il~~~~~-~---~l~~~i~sR~---~~i~f~~ 154 (317)
....+++|||++.+.. +.+..|..++... .++..+|++++.+ . .+.+.++||+ .++.+.+
T Consensus 96 ---------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~ 166 (235)
T PRK08084 96 ---------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQP 166 (235)
T ss_pred ---------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecC
Confidence 1235899999999864 4455666666543 2344677877755 2 3679999999 6799999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh----hCCCcccHHHHHhhc
Q psy879 155 LTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH----NGFGHVTAEYVFKVC 217 (317)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~----~~~~~i~~~~v~~~~ 217 (317)
|+.+++..++.+.+..+|+.++++++++++..++||+|.+++.++... .....||.+.+++++
T Consensus 167 ~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 167 LSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999999899899999999999999999999999999998753 135678888776654
No 90
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.89 E-value=4.4e-22 Score=160.94 Aligned_cols=199 Identities=21% Similarity=0.254 Sum_probs=144.2
Q ss_pred CCCCcccCCHHHHHH---HHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc----
Q psy879 7 QTFSDIVGNEDTVER---LKVFSSSG------NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR---- 73 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~---l~~~l~~~------~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~---- 73 (317)
-+|+|++||+++++. +..++++. .+.++|||||||||||.+|+++|++. ..+++.+++....
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat~liGehV 192 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKATELIGEHV 192 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-----CCceEEechHHHHHHHh
Confidence 369999999999886 45566542 24569999999999999999999984 4456666654322
Q ss_pred --ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH------------HHHHHHHHHhhhc--cCCceEEEEecCCC
Q psy879 74 --GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD------------GAQQALRRTMEIY--SNTTRFALACNNSE 137 (317)
Q Consensus 74 --~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~------------~~~~~ll~~le~~--~~~~~~il~~~~~~ 137 (317)
+...+++......+ ..+.|++|||.|.+.- +..|+|+.-|+.. ...++.|.+||+++
T Consensus 193 Gdgar~Ihely~rA~~-------~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~ 265 (368)
T COG1223 193 GDGARRIHELYERARK-------AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE 265 (368)
T ss_pred hhHHHHHHHHHHHHHh-------cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChh
Confidence 23344444444333 3588999999998642 2478888887744 34577899999999
Q ss_pred cCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH------HHhhhCCCccc
Q psy879 138 KIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNL------QSTHNGFGHVT 209 (317)
Q Consensus 138 ~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l------~~~~~~~~~i~ 209 (317)
-++++++|||.. |+|..|+.++...++...+++--+.++-. +++++..+.| +-|....-. ++.+.+...|+
T Consensus 266 ~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~ 344 (368)
T COG1223 266 LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE 344 (368)
T ss_pred hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhh
Confidence 999999999998 99999999999999999999877777655 6777776654 333332222 23334566777
Q ss_pred HHHHHhhcC
Q psy879 210 AEYVFKVCD 218 (317)
Q Consensus 210 ~~~v~~~~~ 218 (317)
.+++..++.
T Consensus 345 ~edie~al~ 353 (368)
T COG1223 345 REDIEKALK 353 (368)
T ss_pred HHHHHHHHH
Confidence 777765544
No 91
>PRK06893 DNA replication initiation factor; Validated
Probab=99.89 E-value=2.7e-21 Score=161.48 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=140.8
Q ss_pred CCCCCCcccCCHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH
Q psy879 5 RPQTFSDIVGNEDTV--ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~--~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (317)
.|.+|++++++++.. ..+.........|.++||||||+|||++++++++++.....+..++..+...... .+.+
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~----~~~~ 86 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS----PAVL 86 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh----HHHH
Confidence 456899999766432 2233333333335589999999999999999999975443334444433211111 1111
Q ss_pred HHHHhhcccCCCCceeEEEEeCCCCCC--HHHHHHHHHHhhhccC--CceEEEEecCC-C---cCchhHhhhcc---eee
Q psy879 83 KMFAQQKVTLPPGRHKIVILDEADSMT--DGAQQALRRTMEIYSN--TTRFALACNNS-E---KIIEPIQSRCA---MLR 151 (317)
Q Consensus 83 ~~~~~~~~~~~~~~~~vliiDE~d~l~--~~~~~~ll~~le~~~~--~~~~il~~~~~-~---~l~~~i~sR~~---~i~ 151 (317)
..+ ....+++|||++.+. ...+..|+.+++.... .+++|++++.. . ...+.++||+. .++
T Consensus 87 ~~~---------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~ 157 (229)
T PRK06893 87 ENL---------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQ 157 (229)
T ss_pred hhc---------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeee
Confidence 111 345799999999885 3345577777775433 34455666653 3 34589999997 699
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhc
Q psy879 152 YNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVC 217 (317)
Q Consensus 152 f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~ 217 (317)
+++|+.++...++++.+..+++.+++++++++++.++||+|.+++.++.... ..+.||.+.+++++
T Consensus 158 l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 158 LNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999986532 34568888776654
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=1.5e-21 Score=166.54 Aligned_cols=190 Identities=19% Similarity=0.256 Sum_probs=136.0
Q ss_pred CCCcccCCHHHHHHHHHHHh----------c-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCC--CCCceEEecCC
Q psy879 8 TFSDIVGNEDTVERLKVFSS----------S-----GNVPNIIISGPPGVGKTTTILCLARILLGPS--FKDAVLELNAS 70 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~----------~-----~~~~~~ll~G~~G~GKt~la~~la~~l~~~~--~~~~~~~~~~~ 70 (317)
.+++++|.+.+++.+...+. . +..+|++|+||||||||++|+.+++.+.... ....++++++.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999988764421 1 2345799999999999999999999874322 12234555443
Q ss_pred CCcCh--HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC--------HHHHHHHHHHhhhccCCceEEEEecCCC---
Q psy879 71 NDRGI--DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT--------DGAQQALRRTMEIYSNTTRFALACNNSE--- 137 (317)
Q Consensus 71 ~~~~~--~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~--------~~~~~~ll~~le~~~~~~~~il~~~~~~--- 137 (317)
+..+. .+....+...... ....|+||||+|.+. .+.++.|++.|++...+.++|+++....
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~------a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~ 157 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKK------ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDY 157 (261)
T ss_pred HhhhhhccchHHHHHHHHHh------ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHH
Confidence 21110 0001111111111 235699999999875 4567889999998877777777765432
Q ss_pred --cCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh----------cCCCHHHHHHHHHHhhh
Q psy879 138 --KIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT----------AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 138 --~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----------~~gd~r~~i~~l~~~~~ 203 (317)
.+.|+++|||.. ++|++++.+++.+++...+...+..++++++..+.+. +.||.|.+.|.++.+..
T Consensus 158 ~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 158 FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 467899999954 9999999999999999999998889999998887543 36899999999987643
No 93
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=1.2e-21 Score=182.48 Aligned_cols=203 Identities=20% Similarity=0.299 Sum_probs=134.1
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-----EEEECCCCCCHHHHHHHHHHHHcCCC--CCCceEEecCCC--
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-----IIISGPPGVGKTTTILCLARILLGPS--FKDAVLELNASN-- 71 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-----~ll~G~~G~GKt~la~~la~~l~~~~--~~~~~~~~~~~~-- 71 (317)
+|||||+++++++||++.++.+..++.....++ ++|+||+|+||||+++.+++.+...- +..++......+
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~ 154 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDH 154 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccccc
Confidence 479999999999999999999999988655433 99999999999999999999864210 000000000000
Q ss_pred -------------CcChHHHHHHHHHHHhhcccC---CCCceeEEEEeCCCCCCHHHHHHHHHHhh-h--ccCCceEEEE
Q psy879 72 -------------DRGIDTVRNKIKMFAQQKVTL---PPGRHKIVILDEADSMTDGAQQALRRTME-I--YSNTTRFALA 132 (317)
Q Consensus 72 -------------~~~~~~i~~~~~~~~~~~~~~---~~~~~~vliiDE~d~l~~~~~~~ll~~le-~--~~~~~~~il~ 132 (317)
......+...+.......... ..+.++||+|||++++......++..++. . ....+.+|++
T Consensus 155 ~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I 234 (637)
T TIGR00602 155 KVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFI 234 (637)
T ss_pred ccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEE
Confidence 011223333333222110000 12568899999998876543223333322 1 1234556666
Q ss_pred ecCC-C--------cC------chhHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCC------C-CHHHHHHHHHhcC
Q psy879 133 CNNS-E--------KI------IEPIQS--RCAMLRYNKLTDAQLLSKVIEICEKENIS------H-TNDGLEAIVFTAQ 188 (317)
Q Consensus 133 ~~~~-~--------~l------~~~i~s--R~~~i~f~~~~~~~~~~~l~~~~~~~~~~------i-~~~~~~~l~~~~~ 188 (317)
++.. . .+ .+++++ |+..|.|+|++..++.+.|..++..++.. + +++++..++..++
T Consensus 235 ~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~ 314 (637)
T TIGR00602 235 ITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCS 314 (637)
T ss_pred ecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCC
Confidence 5531 1 12 278888 55669999999999999999999876432 2 4578999999999
Q ss_pred CCHHHHHHHHHHhhh
Q psy879 189 GDMRQALNNLQSTHN 203 (317)
Q Consensus 189 gd~r~~i~~l~~~~~ 203 (317)
||+|.||+.|+.++.
T Consensus 315 GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 315 GDIRSAINSLQFSSS 329 (637)
T ss_pred ChHHHHHHHHHHHHh
Confidence 999999999998755
No 94
>PRK08727 hypothetical protein; Validated
Probab=99.87 E-value=1.6e-20 Score=157.21 Aligned_cols=199 Identities=15% Similarity=0.241 Sum_probs=141.5
Q ss_pred CCCCcccCCH-HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHH
Q psy879 7 QTFSDIVGNE-DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF 85 (317)
Q Consensus 7 ~~~~~~~g~~-~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 85 (317)
.+|+++++.+ .....+.....+.....++|+||+|+|||+++++++..+..... .+.+++.... ...+.+.+..+
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~--~~~y~~~~~~--~~~~~~~~~~l 91 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR--SSAYLPLQAA--AGRLRDALEAL 91 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEEeHHHh--hhhHHHHHHHH
Confidence 3689888644 44555554444333334999999999999999999998754433 2333332110 11122222221
Q ss_pred HhhcccCCCCceeEEEEeCCCCCC--HHHHHHHHHHhhhcc-CCceEEEEecCC-C---cCchhHhhh---cceeeecCC
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMT--DGAQQALRRTMEIYS-NTTRFALACNNS-E---KIIEPIQSR---CAMLRYNKL 155 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~--~~~~~~ll~~le~~~-~~~~~il~~~~~-~---~l~~~i~sR---~~~i~f~~~ 155 (317)
....+|+|||++.+. +..+..++++++... ....+|++++.+ . .+.+.++|| |..+.|++|
T Consensus 92 ---------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~ 162 (233)
T PRK08727 92 ---------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVL 162 (233)
T ss_pred ---------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCC
Confidence 245699999999885 345667778777532 344588888754 3 357999999 778999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh----hCCCcccHHHHHhhcC
Q psy879 156 TDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH----NGFGHVTAEYVFKVCD 218 (317)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~----~~~~~i~~~~v~~~~~ 218 (317)
+.+++..++..++..+++.+++++++++++.++||+|.+++.++.+. ...+.||.+.+++++.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999988887653 2345677777665543
No 95
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.86 E-value=2e-20 Score=176.08 Aligned_cols=219 Identities=24% Similarity=0.280 Sum_probs=157.9
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCCCc-Ch
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASNDR-GI 75 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~~~-~~ 75 (317)
+.|||.+|++++||+..++.+...+..+.+++++|+|||||||||+|+.+.+...... ....++.+++.... ..
T Consensus 146 ~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~ 225 (615)
T TIGR02903 146 SLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP 225 (615)
T ss_pred hhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH
Confidence 5799999999999999999988888777777899999999999999999988753211 12346666654321 11
Q ss_pred HHHHHH-HH------------HHHhh------cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------
Q psy879 76 DTVRNK-IK------------MFAQQ------KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------ 124 (317)
Q Consensus 76 ~~i~~~-~~------------~~~~~------~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------ 124 (317)
..+... ++ .+... ...+......+++|||++.|....|+.|++.+++..
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 305 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCC
Confidence 111100 00 00000 000111345799999999999999999999998521
Q ss_pred --------------C--CceEEEE-ecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy879 125 --------------N--TTRFALA-CNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTA 187 (317)
Q Consensus 125 --------------~--~~~~il~-~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 187 (317)
. ..++|.+ ++++..+.++++|||..+.|++++.+++..++...+.+.++.+++++++.+...+
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 1 1233333 3456788999999999999999999999999999999888889999888888876
Q ss_pred CCCHHHHHHHHHHhhh-------------CCCcccHHHHHhhcCCCC
Q psy879 188 QGDMRQALNNLQSTHN-------------GFGHVTAEYVFKVCDEPH 221 (317)
Q Consensus 188 ~gd~r~~i~~l~~~~~-------------~~~~i~~~~v~~~~~~~~ 221 (317)
. +.|++++.|+.+.. ....|+.+++.+++....
T Consensus 386 ~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 386 I-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 5 77999999865421 112578888888777654
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.86 E-value=3.4e-20 Score=155.21 Aligned_cols=199 Identities=15% Similarity=0.183 Sum_probs=148.3
Q ss_pred cCCCCCCccc--CCHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 4 YRPQTFSDIV--GNEDTVERLKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 4 y~P~~~~~~~--g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
-+|.+|++++ ++..+...+..+.... ...+++|+||+|+|||++++++++...... ..+..+++.... .
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~------~ 83 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPL------L 83 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhH------H
Confidence 3567899998 3567777888877633 334699999999999999999999874433 234444432211 1
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCC--ceEEEEecCCC---cCchhHhhhc---ceeee
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNT--TRFALACNNSE---KIIEPIQSRC---AMLRY 152 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~--~~~il~~~~~~---~l~~~i~sR~---~~i~f 152 (317)
.+. . .....+++|||++.+....+..|+.+++..... ..++++++.+. .+.+.+.||+ ..+++
T Consensus 84 ~~~---~------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l 154 (227)
T PRK08903 84 AFD---F------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYEL 154 (227)
T ss_pred HHh---h------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEe
Confidence 111 0 134679999999999988899999999764433 23555555332 4568889996 56999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh----hCCCcccHHHHHhhcCC
Q psy879 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH----NGFGHVTAEYVFKVCDE 219 (317)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~----~~~~~i~~~~v~~~~~~ 219 (317)
+++++++...++.+.+..+++.+++++++.+++.+.||+|++.+.++... ...+.|+...+++++..
T Consensus 155 ~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 155 KPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 99999999999999888899999999999999999999999988887643 35578898888776653
No 97
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.85 E-value=5.1e-20 Score=154.23 Aligned_cols=199 Identities=14% Similarity=0.225 Sum_probs=145.9
Q ss_pred CCCCCCcccC--CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH
Q psy879 5 RPQTFSDIVG--NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82 (317)
Q Consensus 5 ~P~~~~~~~g--~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (317)
.|.+|+++++ +.++++.++.++.....++++|+||+|||||++++++++...... ..++.+++.... ....+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~--~~~~~i~~~~~~--~~~~~~~ 85 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG--KSAIYLPLAELA--QADPEVL 85 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEeHHHHH--HhHHHHH
Confidence 4567899984 677899999987766666799999999999999999999875332 234445443211 1111111
Q ss_pred HHHHhhcccCCCCceeEEEEeCCCCCCHHH--HHHHHHHhhhcc-CCceEEEEecCCC-c--C-chhHhhhcc---eeee
Q psy879 83 KMFAQQKVTLPPGRHKIVILDEADSMTDGA--QQALRRTMEIYS-NTTRFALACNNSE-K--I-IEPIQSRCA---MLRY 152 (317)
Q Consensus 83 ~~~~~~~~~~~~~~~~vliiDE~d~l~~~~--~~~ll~~le~~~-~~~~~il~~~~~~-~--l-~~~i~sR~~---~i~f 152 (317)
..+ ....+++|||++.+.... ++.|..+++... ....+|++++... . . .+.+.+|+. .+.+
T Consensus 86 ~~~---------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l 156 (226)
T TIGR03420 86 EGL---------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156 (226)
T ss_pred hhc---------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEec
Confidence 111 234699999999997644 788888777532 3346777776532 2 2 378899974 5999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh----hCCCcccHHHHHhh
Q psy879 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH----NGFGHVTAEYVFKV 216 (317)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~----~~~~~i~~~~v~~~ 216 (317)
++++.++...++...+.+.++.+++++++.++..++||+|.+.+.++.+. ...+.|+.+.+.++
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~ 224 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEV 224 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999888889999999999999999999999999987633 24567888777654
No 98
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=3.5e-19 Score=144.02 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=138.9
Q ss_pred HHHHHHHHhcCCCce-EEEECCCC-CCHHHHHHHHHHHHcCCCC----CCceEEecCC-------CCcChHHHHHHHHHH
Q psy879 19 VERLKVFSSSGNVPN-IIISGPPG-VGKTTTILCLARILLGPSF----KDAVLELNAS-------NDRGIDTVRNKIKMF 85 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~-~ll~G~~G-~GKt~la~~la~~l~~~~~----~~~~~~~~~~-------~~~~~~~i~~~~~~~ 85 (317)
+..+...++++++.| |||.|..+ +||..++..+++.+.|... ...+..+.+. ...+++++|+....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 457888999999999 99999998 9999999999998876421 1223333322 357889999988887
Q ss_pred HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHH
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVI 165 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~ 165 (317)
...+. .++++|++|+++|.|+..+.|+||+++||||+++.||++|+++..++++|+|||+.+.|+.++.....++..
T Consensus 82 ~~~p~---~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 82 SKTSA---ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYS 158 (263)
T ss_pred hhCcc---cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHH
Confidence 77763 379999999999999999999999999999999999999999999999999999999999999988888776
Q ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy879 166 EICEKENISHTNDGLEAIVFTAQGDMRQALNNLQS 200 (317)
Q Consensus 166 ~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~ 200 (317)
..+.. ..+...++.+.+...-|....+...+.
T Consensus 159 ~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~ 190 (263)
T PRK06581 159 QFIQP---IADNKTLDFINRFTTKDRELWLDFIDN 190 (263)
T ss_pred Hhccc---ccccHHHHHHHHHhhhhHHHHHHHHHH
Confidence 65432 123445666666655555544444433
No 99
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=2.5e-19 Score=153.82 Aligned_cols=188 Identities=21% Similarity=0.232 Sum_probs=132.1
Q ss_pred CcccCCHHHHHHHHHHHh----------c-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCC--CCCceEEecCCCC
Q psy879 10 SDIVGNEDTVERLKVFSS----------S-----GNVPNIIISGPPGVGKTTTILCLARILLGPS--FKDAVLELNASND 72 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~----------~-----~~~~~~ll~G~~G~GKt~la~~la~~l~~~~--~~~~~~~~~~~~~ 72 (317)
.+++|.+.+++.+..++. . +...|++|+||||||||++|+++++.+.... ....+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 379999999887765531 1 1233699999999999999999999874322 1223555553221
Q ss_pred cCh--HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCC---------CHHHHHHHHHHhhhccCCceEEEEecCCC----
Q psy879 73 RGI--DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM---------TDGAQQALRRTMEIYSNTTRFALACNNSE---- 137 (317)
Q Consensus 73 ~~~--~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l---------~~~~~~~ll~~le~~~~~~~~il~~~~~~---- 137 (317)
.+. ............. ..+.|+||||++.+ ..+.++.|++.|+....++++|++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred HHHHhccchHHHHHHHHH------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 000 0000001111111 24579999999986 45678899999998877888888775421
Q ss_pred -cCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHHhhh
Q psy879 138 -KIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT--------AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 138 -~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------~~gd~r~~i~~l~~~~~ 203 (317)
...|+++|||.. +.|++++.+++..++...+++.+..+++++...+... ..||.|.+.+.++.+..
T Consensus 177 ~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 177 YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 345999999986 9999999999999999999999988998877665543 34889999999987543
No 100
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-19 Score=149.67 Aligned_cols=197 Identities=18% Similarity=0.284 Sum_probs=141.3
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-- 71 (317)
.+++++=|-++.++.++..++- | .+|. +|+|||||||||.+|+++|+.. +..|+.+.++.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvgSElV 222 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVVGSELV 222 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEeccHHHH
Confidence 3688999999999999888752 2 2343 9999999999999999999984 34466666543
Q ss_pred ----CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHHHHHHHHhhh-----ccCCceEEE
Q psy879 72 ----DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQQALRRTMEI-----YSNTTRFAL 131 (317)
Q Consensus 72 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~~~ll~~le~-----~~~~~~~il 131 (317)
..+..-+|+.+..... ..+.||||||+|... .+.|..++++|.+ +..++.+|+
T Consensus 223 qKYiGEGaRlVRelF~lAre-------kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ 295 (406)
T COG1222 223 QKYIGEGARLVRELFELARE-------KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM 295 (406)
T ss_pred HHHhccchHHHHHHHHHHhh-------cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence 2344556666665543 358899999999873 2457778777763 567899999
Q ss_pred EecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhcCC----CHHHHHHHHHHhhh
Q psy879 132 ACNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTN-DGLEAIVFTAQG----DMRQALNNLQSTHN 203 (317)
Q Consensus 132 ~~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g----d~r~~i~~l~~~~~ 203 (317)
+||.++-++|++.+-+.. |+|+.|+.+...++++-+.++-.+ ++ -.++.++..+.| +++.+-.+.-..+.
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 999999999999876655 999999999999999988876443 33 336777777654 33322222211221
Q ss_pred --CCCcccHHHHHhhc
Q psy879 204 --GFGHVTAEYVFKVC 217 (317)
Q Consensus 204 --~~~~i~~~~v~~~~ 217 (317)
....++.++..+++
T Consensus 374 R~~R~~Vt~~DF~~Av 389 (406)
T COG1222 374 RERRDEVTMEDFLKAV 389 (406)
T ss_pred HhccCeecHHHHHHHH
Confidence 55678887765543
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=99.81 E-value=2.6e-18 Score=143.77 Aligned_cols=197 Identities=15% Similarity=0.198 Sum_probs=137.4
Q ss_pred CCCcccC--CHHHHHHHHHHHhc--C-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH
Q psy879 8 TFSDIVG--NEDTVERLKVFSSS--G-NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82 (317)
Q Consensus 8 ~~~~~~g--~~~~~~~l~~~l~~--~-~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (317)
+|++++. +..+.+.+..+..+ + ..++++|+||+|+|||++++++++++.... ..+++++..+... .....+
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~~~~~--~~~~~~ 92 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLAELLD--RGPELL 92 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHHHHHh--hhHHHH
Confidence 6898883 23334445444332 1 224589999999999999999998875332 2334443321110 011111
Q ss_pred HHHHhhcccCCCCceeEEEEeCCCCCC--HHHHHHHHHHhhhccC-CceEEEEecCC-C---cCchhHhhhc---ceeee
Q psy879 83 KMFAQQKVTLPPGRHKIVILDEADSMT--DGAQQALRRTMEIYSN-TTRFALACNNS-E---KIIEPIQSRC---AMLRY 152 (317)
Q Consensus 83 ~~~~~~~~~~~~~~~~vliiDE~d~l~--~~~~~~ll~~le~~~~-~~~~il~~~~~-~---~l~~~i~sR~---~~i~f 152 (317)
..+ ....+++|||++.+. +..+..|+.+++.... ...+|++++.+ . ...+.++||+ ..+.+
T Consensus 93 ~~~---------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l 163 (234)
T PRK05642 93 DNL---------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQM 163 (234)
T ss_pred Hhh---------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeec
Confidence 111 234589999999885 3456778888875433 45677776643 2 3479999999 66999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhc
Q psy879 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVC 217 (317)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~ 217 (317)
.+++.++...+++.++...++.+++++++++++.++||+|.+.+.++.... ..+.||...+++++
T Consensus 164 ~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 164 RGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETL 232 (234)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHh
Confidence 999999999999988888899999999999999999999999999876532 34678887776654
No 102
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=1.7e-18 Score=148.79 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=133.7
Q ss_pred cccCCHHHHHHHHHHHh----------cCC----C-ceEEEECCCCCCHHHHHHHHHHHHcCCCC--CCceEEecCCCCc
Q psy879 11 DIVGNEDTVERLKVFSS----------SGN----V-PNIIISGPPGVGKTTTILCLARILLGPSF--KDAVLELNASNDR 73 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~----------~~~----~-~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~~~~ 73 (317)
+++|.+++++.+...+. .|- + .|++|+||||||||++|+++++.+...+. ...++.+++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 68999999888765421 121 1 26999999999999999999998853322 2245555542211
Q ss_pred Ch--HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCC---------CHHHHHHHHHHhhhccCCceEEEEecCC--C---
Q psy879 74 GI--DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM---------TDGAQQALRRTMEIYSNTTRFALACNNS--E--- 137 (317)
Q Consensus 74 ~~--~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l---------~~~~~~~ll~~le~~~~~~~~il~~~~~--~--- 137 (317)
+. ......+...... ..+.+++|||++.+ ..+.++.|++.|+....++++|++++.. +
T Consensus 103 ~~~~g~~~~~~~~~~~~------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~ 176 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKR------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFF 176 (284)
T ss_pred HhhcccchHHHHHHHHH------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHH
Confidence 00 0000011111111 23579999999987 2456889999999887788888877643 2
Q ss_pred cCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHHhhh
Q psy879 138 KIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT--------AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 138 ~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------~~gd~r~~i~~l~~~~~ 203 (317)
.+.|+++|||.. ++|++++.+++..++...+++.+..+++++...+... ..||.|.+.|.++.+..
T Consensus 177 ~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 177 ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 347999999975 9999999999999999999998888999988877654 46999999999987644
No 103
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.2e-16 Score=140.97 Aligned_cols=280 Identities=13% Similarity=0.210 Sum_probs=205.2
Q ss_pred HHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEE
Q psy879 22 LKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIV 100 (317)
Q Consensus 22 l~~~l~~~-~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vl 100 (317)
+...+.++ ..|.|++||+.---....+..+................... ......+ +......+.+ ++.+++
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~s~~lF---~~~~~v 78 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDS-ELDWADL---LSELESPSLF---GEKRLV 78 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhcccc-cCCHHHH---HHHhhccccc---cCCeeE
Confidence 34445554 45569999999666666666666655322222222221111 2222222 3332233322 567899
Q ss_pred EEeCCCCCC-HHHHHHHHHHhhhcc-CCceEEEEecCCC---cCchhHhhh--cceeeecCCCHHHHHHHHHHHHHHcCC
Q psy879 101 ILDEADSMT-DGAQQALRRTMEIYS-NTTRFALACNNSE---KIIEPIQSR--CAMLRYNKLTDAQLLSKVIEICEKENI 173 (317)
Q Consensus 101 iiDE~d~l~-~~~~~~ll~~le~~~-~~~~~il~~~~~~---~l~~~i~sR--~~~i~f~~~~~~~~~~~l~~~~~~~~~ 173 (317)
.|..++... .+....+......+| ..+.+++..+..+ +..+.+.+- +.++.+.+++..++.+|+..+++..|+
T Consensus 79 ~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l 158 (334)
T COG1466 79 VLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKELGL 158 (334)
T ss_pred EEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHHcCC
Confidence 999998875 455556666666666 5554555554443 233333333 558999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHhhh--CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q psy879 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLG 251 (317)
Q Consensus 174 ~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 251 (317)
.+++++++.++...+||++.+.+++++.+. ..+.|+.++|..++.......+|++++++..++..+++..+++|...|
T Consensus 159 ~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l~~L~~~g 238 (334)
T COG1466 159 KIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDLLLEG 238 (334)
T ss_pred CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998766 334899999999999998889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc---------C--------------------------CChHHHHHHHHHHHHHHhHHhcCC-Cc
Q psy879 252 YAPEDIIGNIFRVAKTL---------D--------------------------IPEPLKLSIIQEIGNVHLRISEGV-NS 295 (317)
Q Consensus 252 ~~~~~i~~~~~~~~~~~---------~--------------------------~~~~~~~~~~~~l~~~~~~l~~g~-~~ 295 (317)
++|..|+..+.+.+..+ | ++.....++++.+.++|..+|+|. ++
T Consensus 239 e~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~~K~~~~d~ 318 (334)
T COG1466 239 EEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQIKTGYGDP 318 (334)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999998876654322 1 333344458899999999999999 89
Q ss_pred HHHHHHHHHHHHH
Q psy879 296 LLQLSGLLARLCI 308 (317)
Q Consensus 296 ~l~le~~~~~~~~ 308 (317)
...++.++.+++.
T Consensus 319 ~~~l~~~l~~~~~ 331 (334)
T COG1466 319 VWALELFLLRLLE 331 (334)
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999874
No 104
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.4e-18 Score=167.81 Aligned_cols=211 Identities=17% Similarity=0.220 Sum_probs=153.5
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCceEEecCCCC----
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF-----KDAVLELNASND---- 72 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~~~~~~~~---- 72 (317)
++.||..+++++|+++.++.+...+..+..+|.+|+||||+|||++++.+|+.+..... +..++.++....
T Consensus 174 ~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~ 253 (731)
T TIGR02639 174 EKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGT 253 (731)
T ss_pred HHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhc
Confidence 56799999999999999999988888888788999999999999999999998743221 234555553211
Q ss_pred cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH---------HHHHHHHHHhhhccCCceEEEEecCC-----Cc
Q psy879 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD---------GAQQALRRTMEIYSNTTRFALACNNS-----EK 138 (317)
Q Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~---------~~~~~ll~~le~~~~~~~~il~~~~~-----~~ 138 (317)
....++.+.+..+..... ...+.|+||||+|.+.. +.++.|...++. +...+|.+|+.. ..
T Consensus 254 ~~~g~~e~~l~~i~~~~~---~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~ 328 (731)
T TIGR02639 254 KYRGDFEERLKAVVSEIE---KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYKNHFE 328 (731)
T ss_pred cccchHHHHHHHHHHHHh---ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHHHHhh
Confidence 111122233333322210 12467999999998852 346778888874 567788888863 25
Q ss_pred CchhHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC---C---HHHHHHHHHHhhhC----
Q psy879 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQG---D---MRQALNNLQSTHNG---- 204 (317)
Q Consensus 139 l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g---d---~r~~i~~l~~~~~~---- 204 (317)
.++++.+||+.+.+++|+.++...+|+..... .++.++++++..++..++. + +++|+++++.++..
T Consensus 329 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~ 408 (731)
T TIGR02639 329 KDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLR 408 (731)
T ss_pred hhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcC
Confidence 78999999999999999999999999976554 4678999999999887743 3 88899999876541
Q ss_pred -----CCcccHHHHHhhc
Q psy879 205 -----FGHVTAEYVFKVC 217 (317)
Q Consensus 205 -----~~~i~~~~v~~~~ 217 (317)
...++.+++..++
T Consensus 409 ~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 409 PKAKKKANVSVKDIENVV 426 (731)
T ss_pred cccccccccCHHHHHHHH
Confidence 2347777776643
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.80 E-value=2.1e-17 Score=151.58 Aligned_cols=204 Identities=16% Similarity=0.208 Sum_probs=142.6
Q ss_pred CCCccc-C--CHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH
Q psy879 8 TFSDIV-G--NEDTVERLKVFSSSG--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82 (317)
Q Consensus 8 ~~~~~~-g--~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (317)
+|++++ | +..+......+..+. ..+.++||||+|+|||++++++++.+.....+..++++++... ...+...+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~~ 197 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNAL 197 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHH
Confidence 588866 3 344566666666542 2345999999999999999999999865433445555554321 11111111
Q ss_pred -----HHHHhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhcc-CCceEEEEecCCC----cCchhHhhhcc--
Q psy879 83 -----KMFAQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIYS-NTTRFALACNNSE----KIIEPIQSRCA-- 148 (317)
Q Consensus 83 -----~~~~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~~-~~~~~il~~~~~~----~l~~~i~sR~~-- 148 (317)
..+...- ....+++|||++.+.. ..+..|+.+++... ....+|++++.+. .+.+.++||+.
T Consensus 198 ~~~~~~~~~~~~-----~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g 272 (450)
T PRK00149 198 RNNTMEEFKEKY-----RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG 272 (450)
T ss_pred HcCcHHHHHHHH-----hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC
Confidence 1111110 2456999999999854 35677777776432 2344677776542 36789999995
Q ss_pred -eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhcC
Q psy879 149 -MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVCD 218 (317)
Q Consensus 149 -~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~~ 218 (317)
.+.|.+|+.+++..+|...+...++.++++++++++..++||+|.+...|..+.. ....|+.+.+.+++.
T Consensus 273 l~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~ 347 (450)
T PRK00149 273 LTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALK 347 (450)
T ss_pred eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999998777765432 456688887766554
No 106
>PRK06620 hypothetical protein; Validated
Probab=99.80 E-value=1.1e-17 Score=137.81 Aligned_cols=182 Identities=13% Similarity=0.201 Sum_probs=126.2
Q ss_pred CCCcccC---CHHHHHHHHHHHhc-C-CC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 8 TFSDIVG---NEDTVERLKVFSSS-G-NV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 8 ~~~~~~g---~~~~~~~l~~~l~~-~-~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
+|++++- +..+...+..+.+. + .+ +.++||||||+|||++++++++... ..+ ..... . . .+
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~--~~~~~-~-~---~~ 81 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----AYI--IKDIF-F-N---EE 81 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC-----CEE--cchhh-h-c---hh
Confidence 5777773 45677777777653 2 22 4599999999999999999887631 111 11110 0 0 00
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-CCceEEEEecC-CC--cCchhHhhhcc---eeeec
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-NTTRFALACNN-SE--KIIEPIQSRCA---MLRYN 153 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-~~~~~il~~~~-~~--~l~~~i~sR~~---~i~f~ 153 (317)
+. ....+++|||++.+... .|..+++... ....++++++. +. .+ +.++||+. ++.+.
T Consensus 82 ----~~--------~~~d~lliDdi~~~~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~ 145 (214)
T PRK06620 82 ----IL--------EKYNAFIIEDIENWQEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLN 145 (214)
T ss_pred ----HH--------hcCCEEEEeccccchHH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeC
Confidence 00 23468999999977543 3433333211 22345555543 22 34 99999998 79999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhc
Q psy879 154 KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVC 217 (317)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~ 217 (317)
+|+.+++..++.+.+...++.++++++++++..++||+|.+++.++.... ..+.||.+.+++++
T Consensus 146 ~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 146 SPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 99999999999999998899999999999999999999999999987432 34567877766543
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=1.2e-16 Score=145.48 Aligned_cols=208 Identities=16% Similarity=0.249 Sum_probs=145.3
Q ss_pred CCCCCccc-CC--HHHHHHHHHHHhc-CC-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC--hHHH
Q psy879 6 PQTFSDIV-GN--EDTVERLKVFSSS-GN-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG--IDTV 78 (317)
Q Consensus 6 P~~~~~~~-g~--~~~~~~l~~~l~~-~~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~i 78 (317)
+-+|+.++ |. ..+......+..+ |. .+.++|||++|+|||++++++++.+.....+..++++++..... ...+
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 35788887 33 3345555555553 22 34599999999999999999999875433344555555432100 0111
Q ss_pred HH---HHHHHHhhcccCCCCceeEEEEeCCCCCC--HHHHHHHHHHhhhcc-CCceEEEEecCCC----cCchhHhhhcc
Q psy879 79 RN---KIKMFAQQKVTLPPGRHKIVILDEADSMT--DGAQQALRRTMEIYS-NTTRFALACNNSE----KIIEPIQSRCA 148 (317)
Q Consensus 79 ~~---~~~~~~~~~~~~~~~~~~vliiDE~d~l~--~~~~~~ll~~le~~~-~~~~~il~~~~~~----~l~~~i~sR~~ 148 (317)
.. .+..+... .....+++|||++.+. ...++.|..+++... ....+|++++.+. .+.+.+.||+.
T Consensus 191 ~~~~~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 191 QKTHKEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN 265 (450)
T ss_pred HHhhhHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh
Confidence 11 11111111 1346699999999986 556788888887543 3345788877653 46789999987
Q ss_pred e---eeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----C--CCcccHHHHHhhc
Q psy879 149 M---LRYNKLTDAQLLSKVIEICEKENI--SHTNDGLEAIVFTAQGDMRQALNNLQSTHN----G--FGHVTAEYVFKVC 217 (317)
Q Consensus 149 ~---i~f~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~--~~~i~~~~v~~~~ 217 (317)
. +.+.+|+.++...+|...++..|+ .++++++++|+..++||+|.+.+.|..+.. . ...|+.+.+.+++
T Consensus 266 ~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l 345 (450)
T PRK14087 266 MGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 345 (450)
T ss_pred CCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHH
Confidence 4 999999999999999999998885 699999999999999999999999976532 2 2578888887765
Q ss_pred C
Q psy879 218 D 218 (317)
Q Consensus 218 ~ 218 (317)
.
T Consensus 346 ~ 346 (450)
T PRK14087 346 R 346 (450)
T ss_pred h
Confidence 4
No 108
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=2e-16 Score=143.91 Aligned_cols=206 Identities=13% Similarity=0.197 Sum_probs=140.9
Q ss_pred CCCccc-CCH--HHHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC--hHHHH-H
Q psy879 8 TFSDIV-GNE--DTVERLKVFSSS-GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG--IDTVR-N 80 (317)
Q Consensus 8 ~~~~~~-g~~--~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~i~-~ 80 (317)
+|++++ |.. .+......+..+ |.+++++||||+|+|||++++++++.+.....+..++++++.+... ...++ +
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~ 182 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcc
Confidence 588888 533 334445555543 3344699999999999999999999986544444555555432100 00010 0
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhcc-CCceEEEEecCC-C---cCchhHhhhcc---ee
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIYS-NTTRFALACNNS-E---KIIEPIQSRCA---ML 150 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~~-~~~~~il~~~~~-~---~l~~~i~sR~~---~i 150 (317)
....+.... .....+++|||++.+.. ..+..|+.+++... ....+|++++.. . .+.+.+.||+. .+
T Consensus 183 ~~~~f~~~~----~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v 258 (440)
T PRK14088 183 KLNEFREKY----RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVA 258 (440)
T ss_pred cHHHHHHHH----HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceE
Confidence 011111110 02467999999998853 34667777776433 234566666543 2 46788999997 59
Q ss_pred eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhc
Q psy879 151 RYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVC 217 (317)
Q Consensus 151 ~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~ 217 (317)
.+.+|+.+....++++.+..+++.++++++++++..+.||+|.+...+..... ....++.+.+.+++
T Consensus 259 ~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L 329 (440)
T PRK14088 259 KLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLL 329 (440)
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888876432 45678887776544
No 109
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.78 E-value=1.3e-17 Score=154.61 Aligned_cols=200 Identities=18% Similarity=0.235 Sum_probs=135.2
Q ss_pred CCCCCcccCCHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-
Q psy879 6 PQTFSDIVGNEDTVERLKVFSS-----------SGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND- 72 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~-----------~~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~- 72 (317)
+.+|+++.|++++++.+..++. ...+| ++|||||||||||++++++|.+. +.+++.++++..
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~~ 125 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFV 125 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCeeeccHHHHH
Confidence 3479999999999887766543 13333 49999999999999999999985 234555554321
Q ss_pred -----cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhhcc--CCceEEE
Q psy879 73 -----RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEIYS--NTTRFAL 131 (317)
Q Consensus 73 -----~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~~~--~~~~~il 131 (317)
.+...++..+..... ..+.||+|||+|.+... ..+.|+..|+... ..+.+|.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~-------~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~ 198 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKK-------NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIA 198 (495)
T ss_pred HHHhcccHHHHHHHHHHHHh-------cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEE
Confidence 122334444443322 34679999999987432 2445666665432 3567888
Q ss_pred EecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC----CCHHHHHHHHHHhh--
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQ----GDMRQALNNLQSTH-- 202 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~----gd~r~~i~~l~~~~-- 202 (317)
+||.++.+++++.+ |+.. +.++.|+.++..+++...+...... ++..+..++..+. +|++.+++.....+
T Consensus 199 aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 199 ATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred ecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999987 5654 9999999999999999887654432 2344667777654 45555555432211
Q ss_pred hCCCcccHHHHHhhcC
Q psy879 203 NGFGHVTAEYVFKVCD 218 (317)
Q Consensus 203 ~~~~~i~~~~v~~~~~ 218 (317)
.+...|+.+++..++.
T Consensus 278 ~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 278 KNKTEITMNDIEEAID 293 (495)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 2456789998877554
No 110
>KOG1970|consensus
Probab=99.78 E-value=3.2e-17 Score=145.57 Aligned_cols=239 Identities=16% Similarity=0.266 Sum_probs=149.0
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHh-----cCCCce--EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEec-C---
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSS-----SGNVPN--IIISGPPGVGKTTTILCLARILLGPSFKDAVLELN-A--- 69 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~-----~~~~~~--~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~-~--- 69 (317)
+|||+|.+.+++--|+.-+..++.|++ ..++++ +|++||+||||||+++.+++++. .. +.+.. +
T Consensus 73 ~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg-~~----~~Ew~Npi~~ 147 (634)
T KOG1970|consen 73 VEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG-YQ----LIEWSNPINL 147 (634)
T ss_pred HHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC-ce----eeeecCCccc
Confidence 589999999999999988888888887 666665 89999999999999999999973 21 22211 1
Q ss_pred ---------CCCcC---hHHHHHHHHHHHhhc-----c----cCCCCceeEEEEeCCCCCCHH-HHHHHHHHhhh---cc
Q psy879 70 ---------SNDRG---IDTVRNKIKMFAQQK-----V----TLPPGRHKIVILDEADSMTDG-AQQALRRTMEI---YS 124 (317)
Q Consensus 70 ---------~~~~~---~~~i~~~~~~~~~~~-----~----~~~~~~~~vliiDE~d~l~~~-~~~~ll~~le~---~~ 124 (317)
+...+ ..++. .++.|.... . .-..+++++++|||....... ....|...|.. .+
T Consensus 148 ~~~~~~h~~t~~~~~~~~s~L~-~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g 226 (634)
T KOG1970|consen 148 KEPENLHNETSFLMFPYQSQLA-VFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIG 226 (634)
T ss_pred cccccccccchhcccchhhHHH-HHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcC
Confidence 00111 11111 112222111 0 011246779999999887644 33333333332 22
Q ss_pred CCceEEEEecCCC--------cCchhHhhhcc--eeeecCCCHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHhcC
Q psy879 125 NTTRFALACNNSE--------KIIEPIQSRCA--MLRYNKLTDAQLLSKVIEICEKENISHT------NDGLEAIVFTAQ 188 (317)
Q Consensus 125 ~~~~~il~~~~~~--------~l~~~i~sR~~--~i~f~~~~~~~~~~~l~~~~~~~~~~i~------~~~~~~l~~~~~ 188 (317)
....++++|+... .+...+.-++. .|.|+|..+.-+++.|..+|..++...+ ...++.++..++
T Consensus 227 ~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~ 306 (634)
T KOG1970|consen 227 RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSG 306 (634)
T ss_pred CCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcC
Confidence 2223444443321 34555555444 4999999999999999999999887776 566889999999
Q ss_pred CCHHHHHHHHHHhhh-CCCcc--------cHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy879 189 GDMRQALNNLQSTHN-GFGHV--------TAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHL 247 (317)
Q Consensus 189 gd~r~~i~~l~~~~~-~~~~i--------~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 247 (317)
||+|.||+.||..+. +.-.+ ..+++...-....+....+.++.+..+| +.+...+.+
T Consensus 307 GDIRsAInsLQlssskg~~~~~~~ks~rs~~s~~~kg~~~~~~s~~nq~i~~ig~~d--e~L~~f~al 372 (634)
T KOG1970|consen 307 GDIRSAINSLQLSSSKGENNLRPRKSGRSGKSDIGKGKSKRMESPENQELQSIGGRD--ESLFLFRAL 372 (634)
T ss_pred ccHHHHHhHhhhhcccCccCCCcccccccccchhhccccccccCchHHHHHHhhcch--HHHHHHHhh
Confidence 999999999998743 21111 1222222222222222334666666655 455555544
No 111
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.78 E-value=1.5e-17 Score=152.56 Aligned_cols=198 Identities=22% Similarity=0.339 Sum_probs=128.2
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcC---CC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEe-cCCC---
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSG---NV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLEL-NASN--- 71 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~---~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~-~~~~--- 71 (317)
+|||+|++.+|++.+++-++.++.|++.. .. ..++|+||+||||||+++.+|+++.. . +.+. ++..
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~-~----v~Ew~np~~~~~ 84 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF-E----VQEWINPVSFRE 84 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC-e----eEEecCCCCccc
Confidence 58999999999999998888888887642 22 23899999999999999999999732 1 2211 1110
Q ss_pred -------Cc----ChHHHH---HHHHHHHhh--cc-cC------CCCceeEEEEeCCCCCCHHHHHHHHHH----hhhcc
Q psy879 72 -------DR----GIDTVR---NKIKMFAQQ--KV-TL------PPGRHKIVILDEADSMTDGAQQALRRT----MEIYS 124 (317)
Q Consensus 72 -------~~----~~~~i~---~~~~~~~~~--~~-~~------~~~~~~vliiDE~d~l~~~~~~~ll~~----le~~~ 124 (317)
.. ..+... +.+..+... .. .+ .....+||+|||..+........|... +....
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~ 164 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSR 164 (519)
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCC
Confidence 00 000001 112222111 00 00 124689999999998765443444444 44323
Q ss_pred C-CceEEEEe-cC------CC--------cCchhHhhhc--ceeeecCCCHHHHHHHHHHHHHHc-----CC-CCC--HH
Q psy879 125 N-TTRFALAC-NN------SE--------KIIEPIQSRC--AMLRYNKLTDAQLLSKVIEICEKE-----NI-SHT--ND 178 (317)
Q Consensus 125 ~-~~~~il~~-~~------~~--------~l~~~i~sR~--~~i~f~~~~~~~~~~~l~~~~~~~-----~~-~i~--~~ 178 (317)
. .++||++- +. .. -+.+.+...+ ..|.|+|.++.-+.+.|..++..+ +. ..+ .+
T Consensus 165 ~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~ 244 (519)
T PF03215_consen 165 CLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQS 244 (519)
T ss_pred CCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHH
Confidence 3 33333331 11 00 2456676654 449999999999999999999987 32 232 34
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhh
Q psy879 179 GLEAIVFTAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 179 ~~~~l~~~~~gd~r~~i~~l~~~~~ 203 (317)
.++.|+..++||+|.||+.||.++.
T Consensus 245 ~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 245 VLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHhc
Confidence 5889999999999999999999877
No 112
>KOG0730|consensus
Probab=99.78 E-value=7.7e-18 Score=152.58 Aligned_cols=182 Identities=20% Similarity=0.251 Sum_probs=131.3
Q ss_pred CCCCcccCCHHHHHHHHHHHh-----------cC-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--
Q psy879 7 QTFSDIVGNEDTVERLKVFSS-----------SG-NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-- 71 (317)
-+|+|+=|++++++.|+..+. =| .+|. +|||||||||||++|+++|++. ..+++.+.+..
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-----~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-----GMNFLSVKGPELF 505 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----cCCeeeccCHHHH
Confidence 469999999999999987653 23 3344 9999999999999999999985 33455554321
Q ss_pred ----CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------HHHHHHHHhhhc--cCCceEEEEec
Q psy879 72 ----DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------AQQALRRTMEIY--SNTTRFALACN 134 (317)
Q Consensus 72 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~~~~ll~~le~~--~~~~~~il~~~ 134 (317)
..+...+++.+....+. .+.|+++||+|.+..+ ..+.||.-|+.. ..++.+|.+||
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~-------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATN 578 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQV-------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATN 578 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhc-------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccC
Confidence 22344566666555443 4589999999987543 356666666633 35677888899
Q ss_pred CCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHhh
Q psy879 135 NSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTND-GLEAIVFTAQG-DMRQALNNLQSTH 202 (317)
Q Consensus 135 ~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g-d~r~~i~~l~~~~ 202 (317)
.++.+++++.+ |+.. +++++|+.+...++++..+++ +.++++ .++.+++.+.| +-+...+.++.++
T Consensus 579 Rpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 579 RPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVCQEAA 649 (693)
T ss_pred ChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999 7765 999999999999999998874 455555 57788876543 4444555555543
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.78 E-value=1.1e-17 Score=162.85 Aligned_cols=194 Identities=15% Similarity=0.186 Sum_probs=144.8
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCceEEecCCC----C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF-----KDAVLELNASN----D 72 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~~~~~~~----~ 72 (317)
++.||.++++++|+++.++.+...+..+..++.+|+||||+|||++++.+++.+..... +..++.++... .
T Consensus 179 ~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~ 258 (852)
T TIGR03345 179 AQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGA 258 (852)
T ss_pred HHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccc
Confidence 56799999999999999999988888888888999999999999999999998743211 12233332221 0
Q ss_pred cCh----HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------HHHHHHHHHhhhccCCceEEEEecCC----
Q psy879 73 RGI----DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------GAQQALRRTMEIYSNTTRFALACNNS---- 136 (317)
Q Consensus 73 ~~~----~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------~~~~~ll~~le~~~~~~~~il~~~~~---- 136 (317)
... ..++..+...... +.+.|+||||++.+.. +..+.|...++. +...+|.+|+..
T Consensus 259 ~~~ge~e~~lk~ii~e~~~~------~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 259 SVKGEFENRLKSVIDEVKAS------PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKK 330 (852)
T ss_pred ccchHHHHHHHHHHHHHHhc------CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhh
Confidence 112 2334444443221 3567999999999964 234467888874 667788888764
Q ss_pred -CcCchhHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHhhh
Q psy879 137 -EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQG------DMRQALNNLQSTHN 203 (317)
Q Consensus 137 -~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------d~r~~i~~l~~~~~ 203 (317)
...++++.+||+.|.+++|+.++...+|...... .++.++++++..++..+.+ =+.+|+++++.++.
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 2578999999999999999999999997655433 4688999999999988854 47889999987654
No 114
>PRK09087 hypothetical protein; Validated
Probab=99.77 E-value=2e-17 Score=137.36 Aligned_cols=187 Identities=14% Similarity=0.159 Sum_probs=133.1
Q ss_pred CCCcccC---CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHH
Q psy879 8 TFSDIVG---NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKM 84 (317)
Q Consensus 8 ~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 84 (317)
+|++++. +..+...+..+.. ...|.++|+||+|+|||++++++++.. +. ..++.. ..+... +..
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~--~~i~~~-~~~~~~----~~~ 85 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS-----DA--LLIHPN-EIGSDA----ANA 85 (226)
T ss_pred ChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc-----CC--EEecHH-HcchHH----HHh
Confidence 6899984 4556666655442 222349999999999999999999763 11 122221 111111 111
Q ss_pred HHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccC-CceEEEEecCCC----cCchhHhhhc---ceeeecCCC
Q psy879 85 FAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSN-TTRFALACNNSE----KIIEPIQSRC---AMLRYNKLT 156 (317)
Q Consensus 85 ~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~----~l~~~i~sR~---~~i~f~~~~ 156 (317)
....+++|||++.+. ..+.+|+++++.... ...+|++++.+. ...+.++||+ ..+++.+|+
T Consensus 86 ----------~~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd 154 (226)
T PRK09087 86 ----------AAEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD 154 (226)
T ss_pred ----------hhcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCC
Confidence 112489999999874 335667777765433 456777766432 3479999999 679999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHh---hh-CCCcccHHHHHhhcC
Q psy879 157 DAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST---HN-GFGHVTAEYVFKVCD 218 (317)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~---~~-~~~~i~~~~v~~~~~ 218 (317)
.+++..++++.+..+++.++++++++++..+.||++.++..+... +. ..+.+|...+++++.
T Consensus 155 ~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 155 DALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999866543 22 456788877766543
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.77 E-value=2.2e-17 Score=148.50 Aligned_cols=204 Identities=19% Similarity=0.233 Sum_probs=131.5
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEec
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS-----------G--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~ 68 (317)
+++.+.+|+|+.|.+..++.+..++.- | .+.+++||||||||||++|+++|+.+.. .++.+.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-----~fi~V~ 249 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-----TFLRVV 249 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-----CEEEEe
Confidence 566668899999999999888877641 1 2234999999999999999999998632 345444
Q ss_pred CCCC------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhh-----ccCC
Q psy879 69 ASND------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEI-----YSNT 126 (317)
Q Consensus 69 ~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~-----~~~~ 126 (317)
.+.. .+...++..+..... ..+.|++|||+|.+.. +.+..++.++.. ...+
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~-------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEE-------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHh-------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 4321 112223333332221 3567999999997642 224444444432 2456
Q ss_pred ceEEEEecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc----CCCHHHHHHHHH
Q psy879 127 TRFALACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTA----QGDMRQALNNLQ 199 (317)
Q Consensus 127 ~~~il~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~----~gd~r~~i~~l~ 199 (317)
+.+|++||.++.+++++.+ |+.. |+|++|+.++...++...+.+..+.- +..++.++..+ +.|++.+....-
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 7899999999999999875 6655 99999999999999998876544321 12244555443 334444433332
Q ss_pred Hhhh--CCCcccHHHHHhhcC
Q psy879 200 STHN--GFGHVTAEYVFKVCD 218 (317)
Q Consensus 200 ~~~~--~~~~i~~~~v~~~~~ 218 (317)
..+. +...|+.+++..+..
T Consensus 402 ~~Alr~~r~~Vt~~D~~~A~~ 422 (438)
T PTZ00361 402 LLALRERRMKVTQADFRKAKE 422 (438)
T ss_pred HHHHHhcCCccCHHHHHHHHH
Confidence 2222 445788887765443
No 116
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.77 E-value=2.9e-17 Score=148.97 Aligned_cols=201 Identities=16% Similarity=0.212 Sum_probs=141.4
Q ss_pred CCCccc-CCH--HHHHHHHHHHhc-----C-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 8 TFSDIV-GNE--DTVERLKVFSSS-----G-NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 8 ~~~~~~-g~~--~~~~~l~~~l~~-----~-~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
+|+.++ |.. .+......+.+. | ..++++||||+|+|||++++++++.+.... ..+++++.... . ..+
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~--~~v~yi~~~~f-~-~~~ 184 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG--GKILYVRSELF-T-EHL 184 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEeeHHHH-H-HHH
Confidence 588887 533 333455555432 2 224599999999999999999999986432 33444443210 0 111
Q ss_pred HHHH-----HHHHhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCceEEEEecCC----CcCchhHhhh
Q psy879 79 RNKI-----KMFAQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIY-SNTTRFALACNNS----EKIIEPIQSR 146 (317)
Q Consensus 79 ~~~~-----~~~~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~-~~~~~~il~~~~~----~~l~~~i~sR 146 (317)
...+ ..+... .....+++|||++.+.. ..+..|+.+++.. .....+|++++.+ ..+.+.++||
T Consensus 185 ~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR 259 (445)
T PRK12422 185 VSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISR 259 (445)
T ss_pred HHHHhcchHHHHHHH-----cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhh
Confidence 1111 111111 13567999999999864 4577777776633 2345678887764 3567999999
Q ss_pred cc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhh---h----CCCcccHHHHHhh
Q psy879 147 CA---MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTH---N----GFGHVTAEYVFKV 216 (317)
Q Consensus 147 ~~---~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~---~----~~~~i~~~~v~~~ 216 (317)
+. .+.+.+|+.+++..+|...+...++.++++++++++....+|+|.+.+.+...+ . ....++.+.+.++
T Consensus 260 ~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~ 339 (445)
T PRK12422 260 FEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKAL 339 (445)
T ss_pred hcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 94 599999999999999999999999999999999999999999999999998763 1 3456888877665
Q ss_pred c
Q psy879 217 C 217 (317)
Q Consensus 217 ~ 217 (317)
+
T Consensus 340 l 340 (445)
T PRK12422 340 L 340 (445)
T ss_pred H
Confidence 4
No 117
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.76 E-value=4e-17 Score=148.91 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=139.7
Q ss_pred CCCCcccCCHHHHHHHHHHHh--------cC-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC----
Q psy879 7 QTFSDIVGNEDTVERLKVFSS--------SG-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND---- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~--------~~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~---- 72 (317)
.+|+++.|.+.+++.+..... -| ..| .+|||||||||||++|+++|+++ +.+++.++....
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEEhHHhcccc
Confidence 458999999988887765321 12 223 39999999999999999999986 344555554321
Q ss_pred c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH------------HHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 73 R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG------------AQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 73 ~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~------------~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
. +...+++.+..... ..+.||+|||+|.+... ..+.|+..|.+....+.+|.|||+++.
T Consensus 300 vGese~~l~~~f~~A~~-------~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~ 372 (489)
T CHL00195 300 VGESESRMRQMIRIAEA-------LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDL 372 (489)
T ss_pred cChHHHHHHHHHHHHHh-------cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhh
Confidence 1 22334444443222 35789999999976431 245677788776677788899999999
Q ss_pred CchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcC----CCHHHHHHHHHH-hhhCCCccc
Q psy879 139 IIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENIS-HTNDGLEAIVFTAQ----GDMRQALNNLQS-THNGFGHVT 209 (317)
Q Consensus 139 l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~~~----gd~r~~i~~l~~-~~~~~~~i~ 209 (317)
+++++.+ ||.. +.++.|+.++..+++...+.+.+.. .++..++.++..+. +|++++....-. +......++
T Consensus 373 Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt 452 (489)
T CHL00195 373 LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFT 452 (489)
T ss_pred CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcC
Confidence 9999976 7765 9999999999999999988775432 23445677777654 466655544432 223556788
Q ss_pred HHHHHhhcCCCCH
Q psy879 210 AEYVFKVCDEPHP 222 (317)
Q Consensus 210 ~~~v~~~~~~~~~ 222 (317)
.+++..++....+
T Consensus 453 ~~dl~~a~~~~~P 465 (489)
T CHL00195 453 TDDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHHhcCC
Confidence 8887766554433
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=5.2e-16 Score=143.22 Aligned_cols=205 Identities=15% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCCcccC-C--HHHHHHHHHHHhc-CC-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC--hHHHHH
Q psy879 8 TFSDIVG-N--EDTVERLKVFSSS-GN-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG--IDTVRN 80 (317)
Q Consensus 8 ~~~~~~g-~--~~~~~~l~~~l~~-~~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~i~~ 80 (317)
+|++|+. . ..+.......+.+ +. .+.++|||++|+|||+|++++++.+.....+..+++++...... ...+++
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~ 365 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD 365 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh
Confidence 5888873 2 2234344444443 22 22399999999999999999999875322234455554422110 011111
Q ss_pred -HHHHHHhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhccC-CceEEEEecCC----CcCchhHhhhcce---
Q psy879 81 -KIKMFAQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIYSN-TTRFALACNNS----EKIIEPIQSRCAM--- 149 (317)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~~~-~~~~il~~~~~----~~l~~~i~sR~~~--- 149 (317)
....+... .....+|+|||++.+.. ..+..|+.+++.... +..+|++++.. ..+.+.++||+..
T Consensus 366 ~~~~~f~~~-----y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLv 440 (617)
T PRK14086 366 GKGDSFRRR-----YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 440 (617)
T ss_pred ccHHHHHHH-----hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCce
Confidence 11111111 13467999999999854 346778888876544 45577788764 2577899999865
Q ss_pred eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhc
Q psy879 150 LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVC 217 (317)
Q Consensus 150 i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~ 217 (317)
+.+.+|+.+....+|...+..+++.++++++++|+....+|+|.+...|..+.. ....|+.+.++.++
T Consensus 441 v~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL 512 (617)
T PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVL 512 (617)
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999888876432 44567777666544
No 119
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.75 E-value=1.1e-16 Score=143.67 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=128.3
Q ss_pred CCCcccCCHHHHHHHHHHHhc-----------C-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc-
Q psy879 8 TFSDIVGNEDTVERLKVFSSS-----------G-N-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR- 73 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 73 (317)
+|+++.|.+..++.+..++.. | . +.+++||||||||||++|+++|+.+. ..++.+.++...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~~~l~~ 203 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVGSELVQ 203 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeehHHHhH
Confidence 588999999998888776531 1 2 23499999999999999999999863 235555543211
Q ss_pred -----ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHHHHHHHHhhhc-----cCCceEEEE
Q psy879 74 -----GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQQALRRTMEIY-----SNTTRFALA 132 (317)
Q Consensus 74 -----~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~~~ll~~le~~-----~~~~~~il~ 132 (317)
+...++..+..... ..+.||+|||+|.+. .+.+..+..++.+. ..++.+|++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~-------~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~a 276 (389)
T PRK03992 204 KFIGEGARLVRELFELARE-------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAA 276 (389)
T ss_pred hhccchHHHHHHHHHHHHh-------cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEe
Confidence 11222332222211 356799999999883 23455566655432 246789999
Q ss_pred ecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHhhh--
Q psy879 133 CNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQSTHN-- 203 (317)
Q Consensus 133 ~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~~~-- 203 (317)
||.++.+++++.+ |+.. ++|++|+.++..+++...++...+.- +..+..++..+.| |++.+....-..+.
T Consensus 277 Tn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 277 TNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred cCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999985 7755 99999999999999998876443321 1335666766543 44444333322221
Q ss_pred CCCcccHHHHHhhc
Q psy879 204 GFGHVTAEYVFKVC 217 (317)
Q Consensus 204 ~~~~i~~~~v~~~~ 217 (317)
+...|+.+++.+++
T Consensus 356 ~~~~i~~~d~~~A~ 369 (389)
T PRK03992 356 DRTEVTMEDFLKAI 369 (389)
T ss_pred CCCCcCHHHHHHHH
Confidence 34567777665543
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.75 E-value=3.9e-17 Score=135.15 Aligned_cols=189 Identities=18% Similarity=0.265 Sum_probs=127.2
Q ss_pred CCCccc-C--CHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC--hHHHHH
Q psy879 8 TFSDIV-G--NEDTVERLKVFSSSGN--VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG--IDTVRN 80 (317)
Q Consensus 8 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~i~~ 80 (317)
+|+.++ | ++.+............ .+.+++|||+|+|||++.+++++++.....+..++++++..... .+.+++
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~ 85 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD 85 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc
Confidence 689986 4 5666666666665433 23489999999999999999999876433344455554321000 000000
Q ss_pred -HHHHHHhhcccCCCCceeEEEEeCCCCCCHHH--HHHHHHHhhhcc-CCceEEEEecCC-C---cCchhHhhhcce---
Q psy879 81 -KIKMFAQQKVTLPPGRHKIVILDEADSMTDGA--QQALRRTMEIYS-NTTRFALACNNS-E---KIIEPIQSRCAM--- 149 (317)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~--~~~ll~~le~~~-~~~~~il~~~~~-~---~l~~~i~sR~~~--- 149 (317)
.+..+...- ....+++||+++.+.... +..|..+++... ....+|++++.+ . .+.+.+.||+..
T Consensus 86 ~~~~~~~~~~-----~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~ 160 (219)
T PF00308_consen 86 GEIEEFKDRL-----RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLV 160 (219)
T ss_dssp TSHHHHHHHH-----CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEE
T ss_pred ccchhhhhhh-----hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcch
Confidence 011111111 357799999999997654 888888888542 344677777543 3 467899999865
Q ss_pred eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q psy879 150 LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201 (317)
Q Consensus 150 i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~ 201 (317)
+.+.+|+.++..+++...+...|+.+++++++++++...+|+|.+...++..
T Consensus 161 ~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 161 VELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp EEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988765
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.75 E-value=1.2e-16 Score=145.04 Aligned_cols=203 Identities=16% Similarity=0.225 Sum_probs=138.5
Q ss_pred CCCccc-CCHH--HHHHHHHHHhcC-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH
Q psy879 8 TFSDIV-GNED--TVERLKVFSSSG-N-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82 (317)
Q Consensus 8 ~~~~~~-g~~~--~~~~l~~~l~~~-~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (317)
+|++++ |... +......+.... . .+.++||||+|+|||++++++++++.....+..++++++.... ..+...+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--NDFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HHHHHHH
Confidence 478854 5433 444455555442 2 2348999999999999999999998644334455666543210 0111100
Q ss_pred -----HHHHhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCceEEEEecCC----CcCchhHhhhcc--
Q psy879 83 -----KMFAQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIY-SNTTRFALACNNS----EKIIEPIQSRCA-- 148 (317)
Q Consensus 83 -----~~~~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~-~~~~~~il~~~~~----~~l~~~i~sR~~-- 148 (317)
..+...- ....+++|||++.+.. ..+..|+.+++.. ..+..+|++++.+ ..+.+.++||+.
T Consensus 186 ~~~~~~~~~~~~-----~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g 260 (405)
T TIGR00362 186 RNNKMEEFKEKY-----RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG 260 (405)
T ss_pred HcCCHHHHHHHH-----HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC
Confidence 1111110 2356999999999864 3567788777653 2345577777653 246788999995
Q ss_pred -eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhc
Q psy879 149 -MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVC 217 (317)
Q Consensus 149 -~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~ 217 (317)
.+.|++|+.++...++...+...++.++++++++++....||+|.+...+..+.. ....|+.+.+.+++
T Consensus 261 ~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L 334 (405)
T TIGR00362 261 LVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEAL 334 (405)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4999999999999999999999999999999999999999999997776655332 44567777665543
No 122
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.75 E-value=1.9e-16 Score=141.60 Aligned_cols=197 Identities=20% Similarity=0.240 Sum_probs=128.1
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-- 71 (317)
-+|+++.|.+.+++.+...+.. | .+.+++||||||||||++++++|+.+. ..++.+.++.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~fi~i~~s~l~ 216 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATFIRVVGSEFV 216 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehHHHH
Confidence 4699999999998888776531 2 123499999999999999999999853 2344443321
Q ss_pred ----CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHH---hhhc--cCCceEEE
Q psy879 72 ----DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRT---MEIY--SNTTRFAL 131 (317)
Q Consensus 72 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~---le~~--~~~~~~il 131 (317)
..+...+++.+..... ..+.||+|||+|.+.. ..+..+..+ ++.. ..++.+|+
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~-------~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~ 289 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARE-------NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 289 (398)
T ss_pred HHhcchhHHHHHHHHHHHHh-------cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 1112233333333221 3578999999998732 223344444 4432 34677899
Q ss_pred EecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHhhh----
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQSTHN---- 203 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~~~~---- 203 (317)
+||.++.+++++.+ |+.. ++|++|+.++...+++..+.+.++.- +-.+..++..+.| +.+.+.++++.++.
T Consensus 290 aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 290 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred ecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999986 6655 99999999999999998877655432 2235666666533 44444444544332
Q ss_pred -CCCcccHHHHHhh
Q psy879 204 -GFGHVTAEYVFKV 216 (317)
Q Consensus 204 -~~~~i~~~~v~~~ 216 (317)
+...|+.+++.++
T Consensus 369 ~~~~~i~~~df~~A 382 (398)
T PTZ00454 369 KNRYVILPKDFEKG 382 (398)
T ss_pred cCCCccCHHHHHHH
Confidence 3446777766554
No 123
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.75 E-value=1.9e-16 Score=133.93 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=102.2
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC------------CCcCchhHhhhcceeeecCCCHHHHHHHH
Q psy879 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN------------SEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~------------~~~l~~~i~sR~~~i~f~~~~~~~~~~~l 164 (317)
+.|+||||++.|.-++...|.+.||..- ..++|++||. |+-++..+..|..++.-.|++.++++.++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 6899999999999999999999999643 2457788875 34688999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHh---hh--CCCcccHHHHHhhc
Q psy879 165 IEICEKENISHTNDGLEAIVFTA-QGDMRQALNNLQST---HN--GFGHVTAEYVFKVC 217 (317)
Q Consensus 165 ~~~~~~~~~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~---~~--~~~~i~~~~v~~~~ 217 (317)
..+++.+++.++++++++++... ..++|.++++|.-+ +. +.+.+..++|..+.
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 99999999999999999999874 57899999999632 22 56688888887643
No 124
>CHL00176 ftsH cell division protein; Validated
Probab=99.75 E-value=1.1e-16 Score=150.56 Aligned_cols=199 Identities=20% Similarity=0.234 Sum_probs=134.0
Q ss_pred CCCCcccCCHHHHHHHHHHH---hc--------CC-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC--
Q psy879 7 QTFSDIVGNEDTVERLKVFS---SS--------GN-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND-- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l---~~--------~~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-- 72 (317)
.+|+|+.|.+++++.+...+ +. .. +.++||+||||||||++|+++|.+. +.+++.++++..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-----~~p~i~is~s~f~~ 254 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSISGSEFVE 254 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeeeccHHHHHH
Confidence 46999999998888776654 21 12 2359999999999999999999985 334565554321
Q ss_pred ----cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HH---HHHHHHHhhhc--cCCceEEEE
Q psy879 73 ----RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GA---QQALRRTMEIY--SNTTRFALA 132 (317)
Q Consensus 73 ----~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~---~~~ll~~le~~--~~~~~~il~ 132 (317)
.+...++..+.... ...+.|++|||+|.+.. .. .+.|+..++.. ..++++|.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAK-------ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HhhhhhHHHHHHHHHHHh-------cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 11223333333321 13567999999998842 22 34444445433 345678889
Q ss_pred ecCCCcCchhHhhh--cce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHhh--h
Q psy879 133 CNNSEKIIEPIQSR--CAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQSTH--N 203 (317)
Q Consensus 133 ~~~~~~l~~~i~sR--~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~~--~ 203 (317)
||+++.+++++.++ +.. +.|++|+.++...+++..++.... .++..+..++..+.| |++.+++.....+ .
T Consensus 328 TN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 328 TNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred cCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999874 433 999999999999999998876443 335567888888776 4555554432211 2
Q ss_pred CCCcccHHHHHhhcC
Q psy879 204 GFGHVTAEYVFKVCD 218 (317)
Q Consensus 204 ~~~~i~~~~v~~~~~ 218 (317)
+...++.+++..+++
T Consensus 407 ~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 407 KKATITMKEIDTAID 421 (638)
T ss_pred CCCCcCHHHHHHHHH
Confidence 456789888877654
No 125
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.74 E-value=9.1e-17 Score=137.84 Aligned_cols=104 Identities=15% Similarity=0.230 Sum_probs=79.9
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC------------CcCchhHhhhcceeeecCCCHHHHHHHH
Q psy879 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS------------EKIIEPIQSRCAMLRYNKLTDAQLLSKV 164 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~------------~~l~~~i~sR~~~i~f~~~~~~~~~~~l 164 (317)
+.|+||||++.|.-++...|.+.+|..- ..++|++||+. +-++..+.+||..+.-.||+++|+.+++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 6899999999999999999999999643 34578888853 3578899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHh
Q psy879 165 IEICEKENISHTNDGLEAIVFT-AQGDMRQALNNLQST 201 (317)
Q Consensus 165 ~~~~~~~~~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~ 201 (317)
.-+|+.+++.+++++++.+... ...++|.|++++..+
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 9999999999999999998876 357899999988654
No 126
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.74 E-value=1.1e-16 Score=145.83 Aligned_cols=171 Identities=19% Similarity=0.235 Sum_probs=116.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCc
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS-----------G-NV-PNIIISGPPGVGKTTTILCLARILLGPS-----FKDA 63 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~ 63 (317)
+++.+.+|+++.|.+..++.++..+.. | .+ .++|||||||||||++++++++.+.... ....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 455667899999999999888777531 1 12 3499999999999999999999974321 1122
Q ss_pred eEEecCCCC------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH------------HHHHHHHHhhhcc-
Q psy879 64 VLELNASND------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG------------AQQALRRTMEIYS- 124 (317)
Q Consensus 64 ~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~------------~~~~ll~~le~~~- 124 (317)
++.+..... .....++..+....... ..+.+.|++|||+|.+... ..+.|+..|+...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a---~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKA---SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHh---hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 333322211 11122333333322221 1245789999999987432 2356777776443
Q ss_pred -CCceEEEEecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCC
Q psy879 125 -NTTRFALACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHT 176 (317)
Q Consensus 125 -~~~~~il~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~ 176 (317)
+++.+|.+||+++.+++++.+ |+.. |+|++|+.++..+++..++.. .+.++
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 567789999999999999997 7766 999999999999999988754 34443
No 127
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=5.4e-17 Score=157.61 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=117.1
Q ss_pred cccCCHHHHHHHHHHHh----c--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH--------
Q psy879 11 DIVGNEDTVERLKVFSS----S--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID-------- 76 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~----~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-------- 76 (317)
+++|++++++.+..++. . .+.++++|+||||||||++|+++|+.+.. .++.++........
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHHHcCCCCc
Confidence 48899999999887653 1 23357999999999999999999999732 23333322211111
Q ss_pred -------HHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH----HHHHHHHHhhhc---------------cCCceEE
Q psy879 77 -------TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG----AQQALRRTMEIY---------------SNTTRFA 130 (317)
Q Consensus 77 -------~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~----~~~~ll~~le~~---------------~~~~~~i 130 (317)
.+.+.+.. . .....|++|||+|++.++ ..++|++.++.. ..++.||
T Consensus 396 ~~g~~~g~i~~~l~~---~-----~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 396 YVGAMPGRIIQGLKK---A-----KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred eeCCCCchHHHHHHH---h-----CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 11211111 1 123459999999999764 347888888731 1357789
Q ss_pred EEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHhc
Q psy879 131 LACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC-----EK-----ENISHTNDGLEAIVFTA 187 (317)
Q Consensus 131 l~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~-----~~-----~~~~i~~~~~~~l~~~~ 187 (317)
+|+|..+.+++++++||.++.|++|+.++...++...+ .. +++.++++++..+++..
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~ 534 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYY 534 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhc
Confidence 99999999999999999999999999999988887654 22 24578999999988743
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.72 E-value=4.4e-16 Score=132.72 Aligned_cols=189 Identities=17% Similarity=0.163 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH---------HHHHHH
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN---------KIKMFA 86 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~---------~~~~~~ 86 (317)
..+.+.+..++..|. +++|+||||||||++|+++++.+ +..++.+++.......++-. ....+.
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR-----DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 345566777777776 79999999999999999999875 23355555543322221110 000000
Q ss_pred ---------------hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc----------------cCCceEEEEecC
Q psy879 87 ---------------QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY----------------SNTTRFALACNN 135 (317)
Q Consensus 87 ---------------~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~----------------~~~~~~il~~~~ 135 (317)
..+.......+.++++||++.+.++.++.|+.+|++. +++.++|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 0000000123469999999999999999999999742 235678888887
Q ss_pred CC-----cCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc----------CCCHHHHHHHHHH
Q psy879 136 SE-----KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTA----------QGDMRQALNNLQS 200 (317)
Q Consensus 136 ~~-----~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~----------~gd~r~~i~~l~~ 200 (317)
.. .+.+++.+||..+.+..|+.++..+++...+ .++++.+++++... .-.+|.++...+.
T Consensus 161 ~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~ 235 (262)
T TIGR02640 161 VEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEV 235 (262)
T ss_pred ccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHH
Confidence 52 5689999999999999999999999988864 45677776665432 1237777777766
Q ss_pred hhh--CCCcccHHHHHhh
Q psy879 201 THN--GFGHVTAEYVFKV 216 (317)
Q Consensus 201 ~~~--~~~~i~~~~v~~~ 216 (317)
+.. ....++.+++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~ 253 (262)
T TIGR02640 236 ATQQDIPVDVDDEDFVDL 253 (262)
T ss_pred HHHcCCCCCCCcHHHHHH
Confidence 544 2234566665543
No 129
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.72 E-value=1.4e-15 Score=127.62 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=141.0
Q ss_pred CCceEEEEec--CCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHH
Q psy879 125 NTTRFALACN--NSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE------NISHTNDGLEAIVFTAQGDMRQALN 196 (317)
Q Consensus 125 ~~~~~il~~~--~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~------~~~i~~~~~~~l~~~~~gd~r~~i~ 196 (317)
+.+.+|.+|+ +...+.++++|||+++.|.+++.+++..+|.+.+..+ .+.+++++++.|+..++||.|.++|
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 4556666543 3368999999999999999999999999999988642 3679999999999999999999999
Q ss_pred HHHHhhh---CCC--cccHHHHHhhcC----------CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy879 197 NLQSTHN---GFG--HVTAEYVFKVCD----------EPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNI 261 (317)
Q Consensus 197 ~l~~~~~---~~~--~i~~~~v~~~~~----------~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~ 261 (317)
.|+.++. +.. .||.+.+++++. ..+.+.++.++++++..|.+.|+.|+..|++.|++|..|.+.+
T Consensus 87 ~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRL 166 (300)
T PRK14700 87 LLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRM 166 (300)
T ss_pred HHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9998553 122 389988887552 4577899999999999999999999999999999999999999
Q ss_pred HHHH-HhcCCChHHHHHHHHHHHHHHhHHhcCC-CcHHHHHHHHHHHH
Q psy879 262 FRVA-KTLDIPEPLKLSIIQEIGNVHLRISEGV-NSLLQLSGLLARLC 307 (317)
Q Consensus 262 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~~~l~le~~~~~~~ 307 (317)
...+ +.+|+.+.....+.....+.-. .-|. ..++.|-..+.-+|
T Consensus 167 ii~AsEDIGlAdP~al~~a~aa~~A~~--~iG~PEa~i~La~aviyLA 212 (300)
T PRK14700 167 LCIASEDIGNADPQALRVAMDAWNAYE--KLGMPEGRLVLAQAAIYLA 212 (300)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHHH
Confidence 8876 4557766544333332222222 2354 66677777776666
No 130
>KOG0733|consensus
Probab=99.70 E-value=6.9e-16 Score=138.60 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=127.6
Q ss_pred CCCcccCCHHHHHHHHHHHh----------cC-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----
Q psy879 8 TFSDIVGNEDTVERLKVFSS----------SG-NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN---- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~----------~~-~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~---- 71 (317)
+|.++=|.+..+..|...+- -| .+|. +||+||||||||.+|+++|+++ +.+++.+++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-----~vPf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-----GVPFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-----CCceEeecchhhhcc
Confidence 48899999888887666542 23 2333 9999999999999999999996 45567666532
Q ss_pred --CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------HHHHHHHHhhhcc------CCceEEEE
Q psy879 72 --DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------AQQALRRTMEIYS------NTTRFALA 132 (317)
Q Consensus 72 --~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~~~~ll~~le~~~------~~~~~il~ 132 (317)
..+...+++.+..... ..+.|+||||+|.+++. ....|+..|++.. ..+.+|.+
T Consensus 263 vSGESEkkiRelF~~A~~-------~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKS-------NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred cCcccHHHHHHHHHHHhc-------cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 3344567777665543 35889999999999764 2456888888653 34668889
Q ss_pred ecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Q psy879 133 CNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQ 193 (317)
Q Consensus 133 ~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~ 193 (317)
||+|+.+++++++-+.. |.+.-|++.+..++|..+|+...+.- +-...+|+..+.|-...
T Consensus 336 TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 336 TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGA 398 (802)
T ss_pred CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccch
Confidence 99999999999876554 99999999999999999998544322 22356788887664433
No 131
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.70 E-value=6.1e-16 Score=138.33 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=126.7
Q ss_pred CCCCcccCCHHHHHHHHHHHhcC------------C-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-
Q psy879 7 QTFSDIVGNEDTVERLKVFSSSG------------N-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~~------------~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~- 72 (317)
-+|+++.|.+..++.+..++... . +.+++||||||||||++++++++.+.. .++.+.....
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-----~~~~v~~~~l~ 193 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-----TFIRVVGSELV 193 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-----CEEecchHHHH
Confidence 46889999999999888776421 1 234999999999999999999998632 2343332211
Q ss_pred ---cC--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhc-----cCCceEEE
Q psy879 73 ---RG--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIY-----SNTTRFAL 131 (317)
Q Consensus 73 ---~~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~-----~~~~~~il 131 (317)
.+ ...++..+.... ...+.||+|||+|.+.. ..+..+..++.+. .+++.+|+
T Consensus 194 ~~~~g~~~~~i~~~f~~a~-------~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ 266 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAK-------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIA 266 (364)
T ss_pred HHhhhHHHHHHHHHHHHHH-------hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 00 111222222111 13467999999998842 2345555555432 34678999
Q ss_pred EecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhcCC----CHHHHHHHHHHhh-
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTN-DGLEAIVFTAQG----DMRQALNNLQSTH- 202 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g----d~r~~i~~l~~~~- 202 (317)
+||.++.+++++.+ |+.. +.|+.|+.++..+++...+....+ ++ .....++..+.| |++.+....-..+
T Consensus 267 ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l--~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 267 ATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL--AEDVDLEAIAKMTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred ecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC--CccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999975 6554 999999999999999887754333 22 235666766644 4444433322211
Q ss_pred -hCCCcccHHHHHhhcC
Q psy879 203 -NGFGHVTAEYVFKVCD 218 (317)
Q Consensus 203 -~~~~~i~~~~v~~~~~ 218 (317)
.+...|+.+++.+++.
T Consensus 345 ~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 345 REERDYVTMDDFIKAVE 361 (364)
T ss_pred HhCCCccCHHHHHHHHH
Confidence 2456788887766543
No 132
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=4e-16 Score=123.02 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=108.1
Q ss_pred CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcce-
Q psy879 71 NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAM- 149 (317)
Q Consensus 71 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~- 149 (317)
+..+++++|+.+......+ ...+ +||+++|.|+..++|+|++++|+||.++.||++|+.+.+++++|+|||+.
T Consensus 35 ~~i~Vd~iReii~~~~~~~-----~~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~ 108 (206)
T PRK08485 35 EEFKIEDAKEVIAEAYIAE-----SEEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIE 108 (206)
T ss_pred CCCCHHHHHHHHHHHhhCC-----CCcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheec
Confidence 3689999999888766554 3344 46789999999999999999999999999999999999999999999986
Q ss_pred ------------eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy879 150 ------------LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQS 200 (317)
Q Consensus 150 ------------i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~ 200 (317)
+.|++++.+++..+|.+ ..++++...+++.+.++..+.|.+|.++...+.
T Consensus 109 ~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q 170 (206)
T PRK08485 109 KRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEE 170 (206)
T ss_pred cccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHH
Confidence 77899999999999999 677888778888999999999999998876654
No 133
>KOG0734|consensus
Probab=99.68 E-value=1e-15 Score=135.62 Aligned_cols=195 Identities=19% Similarity=0.211 Sum_probs=134.4
Q ss_pred CCCCcccCCHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---
Q psy879 7 QTFSDIVGNEDTVERLKVFSS-----------SGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--- 71 (317)
.+|+|+.|-+++++.|...+. .|++|. +|++||||||||.+|+++|.+. +.+++....+.
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----GVPFFYASGSEFDE 375 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----CCCeEeccccchhh
Confidence 359999999999888877653 577776 9999999999999999999874 45566655543
Q ss_pred ---CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhcc--CCceEEEEecC
Q psy879 72 ---DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIYS--NTTRFALACNN 135 (317)
Q Consensus 72 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~~--~~~~~il~~~~ 135 (317)
..+...+|+.+..... ..+.||+|||+|.... ...|.|+--|+.+. ..+++|.+||.
T Consensus 376 m~VGvGArRVRdLF~aAk~-------~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKA-------RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred hhhcccHHHHHHHHHHHHh-------cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 2344566666655432 4588999999998742 23455665566443 35667778999
Q ss_pred CCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHh----cCCCHHHHHHHHHH--hhhCC
Q psy879 136 SEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDG-LEAIVFT----AQGDMRQALNNLQS--THNGF 205 (317)
Q Consensus 136 ~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~----~~gd~r~~i~~l~~--~~~~~ 205 (317)
++.+++++.+ ||.. |..+.|+-.-..++|..+..+ +..++++ ...|++- ++.|+...+|.... +..+.
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA 526 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc
Confidence 9999999975 4444 888999988888888887764 3333222 2334433 35577777776532 22355
Q ss_pred CcccHHHHHh
Q psy879 206 GHVTAEYVFK 215 (317)
Q Consensus 206 ~~i~~~~v~~ 215 (317)
..++..+++-
T Consensus 527 ~~VtM~~LE~ 536 (752)
T KOG0734|consen 527 EMVTMKHLEF 536 (752)
T ss_pred ccccHHHHhh
Confidence 6677766643
No 134
>KOG2227|consensus
Probab=99.68 E-value=1.2e-14 Score=127.16 Aligned_cols=276 Identities=16% Similarity=0.152 Sum_probs=179.2
Q ss_pred CcccCCHHHHHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH-HHHH
Q psy879 10 SDIVGNEDTVERLKVFSS----SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN-KIKM 84 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~----~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~ 84 (317)
..+.|.+.....++.++. ......+++.|.||+|||.+...+...+.+.......+++|+........+.. .+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 456788877777776654 33444599999999999999999888876655555567888875333322222 1222
Q ss_pred HHhhccc---------------CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc---cCCceEEEEecCC---CcCchhH
Q psy879 85 FAQQKVT---------------LPPGRHKIVILDEADSMTDGAQQALRRTMEIY---SNTTRFALACNNS---EKIIEPI 143 (317)
Q Consensus 85 ~~~~~~~---------------~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~---~~~~~~il~~~~~---~~l~~~i 143 (317)
+.+.... ......-|+++||.|.|....+..|+.+++.+ ....++|.++|.. +++++.+
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL 309 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRL 309 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhh
Confidence 2111000 01124668999999999988888888888754 4556667778875 4889999
Q ss_pred hhhcce----eeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHh---cCCCHHHHHHHHHHhhh-------C----
Q psy879 144 QSRCAM----LRYNKLTDAQLLSKVIEICEKENISH-TNDGLEAIVFT---AQGDMRQALNNLQSTHN-------G---- 204 (317)
Q Consensus 144 ~sR~~~----i~f~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~l~~~---~~gd~r~~i~~l~~~~~-------~---- 204 (317)
..|+.. +.|+||+.+++.+++..+...+.... -+.+++.++.. ..||+|+|+..++.+.. .
T Consensus 310 ~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~ 389 (529)
T KOG2227|consen 310 NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDD 389 (529)
T ss_pred hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 987654 99999999999999999988765433 33466776654 47999999999985432 1
Q ss_pred ----------CCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCC
Q psy879 205 ----------FGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL---GYAPEDIIGNIFRVAKTLDIP 271 (317)
Q Consensus 205 ----------~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~~~ 271 (317)
.+.|-.+++..+++.......-...+.+ .....-.+..+..+... ..+..+++..|.+.|....+.
T Consensus 390 ~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~sl-plqqkiilctl~~l~r~~kkd~s~~eL~e~Y~k~C~~~~I~ 468 (529)
T KOG2227|consen 390 PLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRESL-PLQQKIILCTLVLLIRGNKKDVSIAELYEAYLKACQKREIA 468 (529)
T ss_pred CCCCCCCcccccccchHHHHHHhhhhccChhhhhhhhc-CcccchhHHHHHHHHhcccccccHHHHHHHHHHHHHhccCC
Confidence 1234456666555543332222222211 22233344444444443 347888999999988877777
Q ss_pred hHHHHHHHHHHHHHH
Q psy879 272 EPLKLSIIQEIGNVH 286 (317)
Q Consensus 272 ~~~~~~~~~~l~~~~ 286 (317)
+....++...+.=++
T Consensus 469 ~ld~tEF~~i~~ile 483 (529)
T KOG2227|consen 469 PLDRTEFLSICDILE 483 (529)
T ss_pred cccHHHHHHHHHHHH
Confidence 777777655544443
No 135
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.68 E-value=1.8e-15 Score=148.39 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=141.7
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCC-----
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASN----- 71 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~----- 71 (317)
++.||..++.++|+++.++.+...+..+..++.+|+||||+|||++++.++..+.... .+..++.++...
T Consensus 165 ~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~ 244 (852)
T TIGR03346 165 ERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA 244 (852)
T ss_pred HHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcc
Confidence 5789999999999999999999888777777899999999999999999999874321 123344433211
Q ss_pred -CcC--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------HHHHHHHHHhhhccCCceEEEEecCCC---
Q psy879 72 -DRG--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------GAQQALRRTMEIYSNTTRFALACNNSE--- 137 (317)
Q Consensus 72 -~~~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------~~~~~ll~~le~~~~~~~~il~~~~~~--- 137 (317)
..+ ...+...+..+... ..+.|+||||++.+.. +..+.|...++ .+...+|.+|+...
T Consensus 245 ~~~g~~e~~l~~~l~~~~~~------~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 245 KYRGEFEERLKAVLNEVTKS------EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYRK 316 (852)
T ss_pred hhhhhHHHHHHHHHHHHHhc------CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHHH
Confidence 111 11233333332211 3578999999998863 34566666665 35677888887653
Q ss_pred --cCchhHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcC---CC---HHHHHHHHHHhhh
Q psy879 138 --KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQ---GD---MRQALNNLQSTHN 203 (317)
Q Consensus 138 --~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~---gd---~r~~i~~l~~~~~ 203 (317)
..++++.+||+.+.++.|+.++...+|.....+ .++.++++++...+..+. .| +.+|+++|+.++.
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 478999999999999999999999998876544 467788888888877664 34 8899999987665
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.67 E-value=2.3e-15 Score=146.70 Aligned_cols=184 Identities=21% Similarity=0.268 Sum_probs=133.0
Q ss_pred CcccCCHHHHHHHHHHHhc--------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH-
Q psy879 10 SDIVGNEDTVERLKVFSSS--------GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR- 79 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~--------~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~- 79 (317)
..++||+++++.+...+.. +++ +.++|.||+|+|||.+|+++++.+.+... .++.++.+.......+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~--~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ--NLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCc--ceEEEeHHHhhhhhhhcc
Confidence 4678999999998877642 122 23899999999999999999999865432 23333322111000000
Q ss_pred --------------HHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEec
Q psy879 80 --------------NKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACN 134 (317)
Q Consensus 80 --------------~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~ 134 (317)
..+..... ..++.||++||++++.++.++.|++++++.. .++++|+|||
T Consensus 644 l~g~~~gyvg~~~~g~L~~~v~------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 644 LKGSPPGYVGYGEGGVLTEAVR------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred ccCCCCCcccccccchHHHHHH------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 01111111 1357899999999999999999999998654 6788999988
Q ss_pred CCC-----------------------------cCchhHhhhcceeeecCCCHHHHHHHHHHHHHH-------c-C--CCC
Q psy879 135 NSE-----------------------------KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK-------E-N--ISH 175 (317)
Q Consensus 135 ~~~-----------------------------~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~-------~-~--~~i 175 (317)
-.. .+.|.+.+|+.++.|.|++.+++.+++...+.. . + +.+
T Consensus 718 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i 797 (852)
T TIGR03345 718 AGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVY 797 (852)
T ss_pred CchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 411 256889999999999999999999998765432 1 4 467
Q ss_pred CHHHHHHHHHhcCC---CHHHHHHHHHHh
Q psy879 176 TNDGLEAIVFTAQG---DMRQALNNLQST 201 (317)
Q Consensus 176 ~~~~~~~l~~~~~g---d~r~~i~~l~~~ 201 (317)
+++++++++..+.+ +.|.+.+.++..
T Consensus 798 ~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 798 SEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred CHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 99999999998876 788888888763
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.67 E-value=4e-15 Score=129.58 Aligned_cols=212 Identities=17% Similarity=0.198 Sum_probs=130.2
Q ss_pred CCCCCCcccCCHHHHHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCC--C-------------------
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSS-SGNVPNIIISGPPGVGKTTTILCLARILLGPSFK--D------------------- 62 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~--~------------------- 62 (317)
-|..|.+++||+++++.+.-.+- .| ..|+||+|+||+|||++++++++.+.+.... .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~-~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPG-IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccC-CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 47789999999999998775443 44 3489999999999999999999987321100 0
Q ss_pred -------ceEEecC--CC--CcChHHHHHHH--HHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----
Q psy879 63 -------AVLELNA--SN--DRGIDTVRNKI--KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS----- 124 (317)
Q Consensus 63 -------~~~~~~~--~~--~~~~~~i~~~~--~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~----- 124 (317)
++..+.. +. ..|.-++...+ +.+...+..+......++++||++.+.++.++.|++.|++..
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r 161 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVER 161 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEE
Confidence 0000000 00 01111111111 111111111122456799999999999999999999998532
Q ss_pred --------CCceEEEEecCCC-cCchhHhhhcce-eeecCCCH-HHHHHHHHHHHH------------------------
Q psy879 125 --------NTTRFALACNNSE-KIIEPIQSRCAM-LRYNKLTD-AQLLSKVIEICE------------------------ 169 (317)
Q Consensus 125 --------~~~~~il~~~~~~-~l~~~i~sR~~~-i~f~~~~~-~~~~~~l~~~~~------------------------ 169 (317)
....++.++|..+ .+.+++..||.. +...+++. ++..+++.....
T Consensus 162 ~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (334)
T PRK13407 162 EGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRIL 241 (334)
T ss_pred CCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHH
Confidence 2233444445433 688999999986 77776665 454444443211
Q ss_pred -----HcCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHhh-----hCCCcccHHHHHhhc
Q psy879 170 -----KENISHTNDGLEAIVFTA---Q-GDMRQALNNLQSTH-----NGFGHVTAEYVFKVC 217 (317)
Q Consensus 170 -----~~~~~i~~~~~~~l~~~~---~-gd~r~~i~~l~~~~-----~~~~~i~~~~v~~~~ 217 (317)
-..+.++++.++++++.+ + .++|..+.++..+. .+...|+.++|..+.
T Consensus 242 ~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 242 GARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 134667888888776543 2 36777776554322 267789999987654
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=1.8e-15 Score=146.69 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=120.6
Q ss_pred CCCCcccCCHHHHHHHHHHHh------------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-
Q psy879 7 QTFSDIVGNEDTVERLKVFSS------------SGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~------------~~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~- 72 (317)
.+|+++.|.+.+++.|...+. +...| .+|||||||||||++|+++|+++. ..++.+.++..
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-----~~fi~v~~~~l~ 524 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-----ANFIAVRGPEIL 524 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehHHHh
Confidence 368999999999998887764 11233 399999999999999999999863 34565554321
Q ss_pred -----cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH------------HHHHHHHHHhhh--ccCCceEEEEe
Q psy879 73 -----RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD------------GAQQALRRTMEI--YSNTTRFALAC 133 (317)
Q Consensus 73 -----~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~------------~~~~~ll~~le~--~~~~~~~il~~ 133 (317)
.....++..+..... ..+.|++|||+|.+.+ ...+.|+..|+. ...++.+|++|
T Consensus 525 ~~~vGese~~i~~~f~~A~~-------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQ-------AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred hcccCcHHHHHHHHHHHHHh-------cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 112234444433322 3578999999998742 235667777773 34577889999
Q ss_pred cCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhcCC
Q psy879 134 NNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTN-DGLEAIVFTAQG 189 (317)
Q Consensus 134 ~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g 189 (317)
|.++.+++++.+ ||.. +.|++|+.++..++++...++ ..+++ ..++.++..+.|
T Consensus 598 n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g 655 (733)
T TIGR01243 598 NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEG 655 (733)
T ss_pred CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCC
Confidence 999999999985 8876 999999999999998876553 33333 346777777655
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.66 E-value=6.3e-15 Score=129.92 Aligned_cols=204 Identities=16% Similarity=0.237 Sum_probs=145.8
Q ss_pred CCCcccC---CHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC--hHHHHH
Q psy879 8 TFSDIVG---NEDTVERLKVFSSSG--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG--IDTVRN 80 (317)
Q Consensus 8 ~~~~~~g---~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~i~~ 80 (317)
+|+.++. +..+......+.... ..+.++||||+|.|||++++++++.......+..++++....... ...+++
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh
Confidence 4777774 334444444444432 244599999999999999999999987666666666665432110 111111
Q ss_pred -HHHHHHhhcccCCCCceeEEEEeCCCCCCHH--HHHHHHHHhhhccCCc-eEEEEecCC-C---cCchhHhhhcce---
Q psy879 81 -KIKMFAQQKVTLPPGRHKIVILDEADSMTDG--AQQALRRTMEIYSNTT-RFALACNNS-E---KIIEPIQSRCAM--- 149 (317)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--~~~~ll~~le~~~~~~-~~il~~~~~-~---~l~~~i~sR~~~--- 149 (317)
.+..|... . ...+++||+++.+... .+..|..+++...... .+|+++..+ . .+.+.++||+..
T Consensus 165 ~~~~~Fk~~-----y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~ 238 (408)
T COG0593 165 NEMEKFKEK-----Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLV 238 (408)
T ss_pred hhHHHHHHh-----h-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeE
Confidence 11122111 2 4569999999998654 4888888887654443 567776554 2 466999999876
Q ss_pred eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhc
Q psy879 150 LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVC 217 (317)
Q Consensus 150 i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~ 217 (317)
+...||+.+....+|...+...++.++++++.+++.....|+|.+...+..+.. ....||.+.+.+++
T Consensus 239 ~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L 310 (408)
T COG0593 239 VEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEIL 310 (408)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888865432 45578888776644
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.66 E-value=5.1e-15 Score=144.80 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=120.6
Q ss_pred CcccCCHHHHHHHHHHHhc--------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH-
Q psy879 10 SDIVGNEDTVERLKVFSSS--------GNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR- 79 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~- 79 (317)
+.++||+++++.+..++.. +++. +++|+||+|+|||++|+++|+.+.+... .++.++.+.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~--~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED--AMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc--ceEEEEchhccccccHHH
Confidence 4678999999999888752 2222 3899999999999999999999876532 23333332211111111
Q ss_pred ---------------HHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEe
Q psy879 80 ---------------NKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALAC 133 (317)
Q Consensus 80 ---------------~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~ 133 (317)
....... ..++.||++||+|+++++.++.|++++++. -.+++||+||
T Consensus 587 l~g~~~gyvg~~~~~~l~~~~~-------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 587 LIGSPPGYVGYNEGGQLTEAVR-------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred hcCCCCcccCcCccchHHHHHH-------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 1111111 135689999999999999999999999964 3578899998
Q ss_pred cCCC-------------------------------------cCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHH-----
Q psy879 134 NNSE-------------------------------------KIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEK----- 170 (317)
Q Consensus 134 ~~~~-------------------------------------~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~----- 170 (317)
|... .+.|.+.+|+ .++.|.|++.+++.+++...+..
T Consensus 660 n~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl 739 (821)
T CHL00095 660 NLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRL 739 (821)
T ss_pred CcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7421 1346789999 67999999999999998766543
Q ss_pred --cC--CCCCHHHHHHHHHhc
Q psy879 171 --EN--ISHTNDGLEAIVFTA 187 (317)
Q Consensus 171 --~~--~~i~~~~~~~l~~~~ 187 (317)
.+ +.+++++.+++++..
T Consensus 740 ~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 740 NEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHCCcEEEECHHHHHHHHHhc
Confidence 32 467899999988863
No 141
>KOG0733|consensus
Probab=99.65 E-value=3.9e-15 Score=133.82 Aligned_cols=183 Identities=16% Similarity=0.232 Sum_probs=125.1
Q ss_pred CCCcccCCHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC--
Q psy879 8 TFSDIVGNEDTVERLKVFSSS-----------G-NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND-- 72 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-- 72 (317)
+|+|+=+.+++...|.-++.. | ..|. +|+|||||||||.+|+++|++- +.+|+.+.+...
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----g~NFisVKGPELlN 583 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----GANFISVKGPELLN 583 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----cCceEeecCHHHHH
Confidence 599999999999888777542 1 2244 9999999999999999999984 445665554321
Q ss_pred cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------HHHHHHHHhhhc--cCCceEEEEecCCCcC
Q psy879 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------AQQALRRTMEIY--SNTTRFALACNNSEKI 139 (317)
Q Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~~~~ll~~le~~--~~~~~~il~~~~~~~l 139 (317)
....+-...+...++.+. .+.+.|||+||+|.|.+. ..|.||-=|+.. ...+.+|.+||+|+.+
T Consensus 584 kYVGESErAVR~vFqRAR---~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRAR---ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhh---cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 111122222333333332 257899999999999653 466777766643 3456678889999999
Q ss_pred chhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHh------cCCCHHHHHHHH
Q psy879 140 IEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDG-LEAIVFT------AQGDMRQALNNL 198 (317)
Q Consensus 140 ~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~------~~gd~r~~i~~l 198 (317)
+|++.+-+.. +....|+.++...+|+.+.+..+..+++++ ++.|+.. +|.|+..++...
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREA 729 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHH
Confidence 9999876554 778889999999999999885555554433 4555543 344555444443
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.65 E-value=2.4e-15 Score=146.98 Aligned_cols=194 Identities=17% Similarity=0.246 Sum_probs=140.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCC-----
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASN----- 71 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~----- 71 (317)
++.||..+++++|+++.++.+...+.....++.+|+||||+|||++++.++..+.... .+..++.++...
T Consensus 170 ~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~ 249 (857)
T PRK10865 170 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA 249 (857)
T ss_pred HHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhcc
Confidence 5678999999999999999999888887777899999999999999999999874311 123344443221
Q ss_pred -CcC--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------HHHHHHHHhhhccCCceEEEEecCCC---
Q psy879 72 -DRG--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------AQQALRRTMEIYSNTTRFALACNNSE--- 137 (317)
Q Consensus 72 -~~~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------~~~~ll~~le~~~~~~~~il~~~~~~--- 137 (317)
..+ ...+...+...... ..+.|+||||++.+... .++.|...++. +...+|.+|+..+
T Consensus 250 ~~~g~~e~~lk~~~~~~~~~------~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 250 KYRGEFEERLKGVLNDLAKQ------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQ 321 (857)
T ss_pred chhhhhHHHHHHHHHHHHHc------CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHH
Confidence 111 11233333332221 35679999999998642 57778888764 5677888888764
Q ss_pred --cCchhHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHhhh
Q psy879 138 --KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQ------GDMRQALNNLQSTHN 203 (317)
Q Consensus 138 --~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------gd~r~~i~~l~~~~~ 203 (317)
..++++.+||+.|.+..|+.++...+|...... .++.++++++...+..+. .=+..|+.+++.++.
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa 399 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhc
Confidence 478999999999999999999999988776543 356778888776655543 236677888777655
No 143
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.65 E-value=8.7e-15 Score=141.16 Aligned_cols=201 Identities=17% Similarity=0.231 Sum_probs=133.4
Q ss_pred cccCCHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHH-
Q psy879 11 DIVGNEDTVERLKVFSSS------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIK- 83 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 83 (317)
+++|.+.+++.+..++.. ...+.++|+||||+|||++++.+++.+.. .+..++.........++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-----~~~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR-----KYVRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEcCCCCCHHHhccchhc
Confidence 488999999988766541 23446999999999999999999998632 244444332222222221111
Q ss_pred -----------HHHhhcccCCCCceeEEEEeCCCCCCHHH----HHHHHHHhhhc---------------cCCceEEEEe
Q psy879 84 -----------MFAQQKVTLPPGRHKIVILDEADSMTDGA----QQALRRTMEIY---------------SNTTRFALAC 133 (317)
Q Consensus 84 -----------~~~~~~~~~~~~~~~vliiDE~d~l~~~~----~~~ll~~le~~---------------~~~~~~il~~ 133 (317)
.+... .....|+++||+|++.++. +++|+.+++.- -+++.||+|+
T Consensus 398 ~~g~~~G~~~~~l~~~-----~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 398 YIGSMPGKLIQKMAKV-----GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred cCCCCCcHHHHHHHhc-----CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 11111 1245699999999998764 58999999731 1556677777
Q ss_pred cCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHhcC-----CCHHHHHHHH
Q psy879 134 NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK----------ENISHTNDGLEAIVFTAQ-----GDMRQALNNL 198 (317)
Q Consensus 134 ~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~----------~~~~i~~~~~~~l~~~~~-----gd~r~~i~~l 198 (317)
|.. .+++++++||.++.|.+|+.++...+....+.. ..+.++++++..+++.+. .++++.+..+
T Consensus 473 N~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i 551 (784)
T PRK10787 473 NSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKL 551 (784)
T ss_pred CCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHH
Confidence 665 699999999999999999999999998776631 135688999999886532 2333333332
Q ss_pred -HHhh----hCC----CcccHHHHHhhcCCCCH
Q psy879 199 -QSTH----NGF----GHVTAEYVFKVCDEPHP 222 (317)
Q Consensus 199 -~~~~----~~~----~~i~~~~v~~~~~~~~~ 222 (317)
+..+ .+. -.++.+++.+.++....
T Consensus 552 ~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~~ 584 (784)
T PRK10787 552 CRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred HHHHHHHHHhcCCCceeeecHHHHHHHhCCCcc
Confidence 1111 111 25788888887776543
No 144
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=5.9e-15 Score=141.30 Aligned_cols=169 Identities=16% Similarity=0.256 Sum_probs=119.1
Q ss_pred cccCCHHHHHHHHHHHhc--------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 11 DIVGNEDTVERLKVFSSS--------GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~--------~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
.++||+++++.+..++.. +++ .+++|+||||+|||++|+.+|+.+. ..++.++++.......+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccccHHHH
Confidence 478999999998888762 222 3599999999999999999999973 23455554332211111111
Q ss_pred HH------------HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC--
Q psy879 82 IK------------MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-- 136 (317)
Q Consensus 82 ~~------------~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-- 136 (317)
++ .+... ....++.|+++||+|++.++.++.|+++|++.. .++++|+|||..
T Consensus 534 iG~~~gyvg~~~~g~L~~~---v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 534 IGAPPGYVGFDQGGLLTDA---VIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred cCCCCCcccccccchHHHH---HHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 11 00000 001356899999999999999999999998531 467799998832
Q ss_pred -----------------------CcCchhHhhhcc-eeeecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHH
Q psy879 137 -----------------------EKIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICE-------KEN--ISHTNDGLEAI 183 (317)
Q Consensus 137 -----------------------~~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~~~~l 183 (317)
..+.|.+..|+. ++.|+|++.+++.+++...+. ..| +.+++++++.+
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l 690 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWL 690 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHH
Confidence 125688999997 599999999999988875543 234 45688999998
Q ss_pred HHhc
Q psy879 184 VFTA 187 (317)
Q Consensus 184 ~~~~ 187 (317)
+...
T Consensus 691 ~~~~ 694 (758)
T PRK11034 691 AEKG 694 (758)
T ss_pred HHhC
Confidence 8654
No 145
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.64 E-value=2.8e-15 Score=129.13 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=108.8
Q ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC------CcChHHHHHHHHHHHhhcccCCCCceeEEEE
Q psy879 30 NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN------DRGIDTVRNKIKMFAQQKVTLPPGRHKIVIL 102 (317)
Q Consensus 30 ~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~vlii 102 (317)
++|. ++||||||||||.+++++|+++. ..++.++... ......+++.+........ ..+.+.||+|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~--~~~aPcVLFI 218 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAGELESENAGEPGKLIRQRYREAADIIK--KKGKMSCLFI 218 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhh--ccCCCeEEEE
Confidence 4444 99999999999999999999963 3355555432 1223456666665543210 1256889999
Q ss_pred eCCCCCCHH-----------H-HHHHHHHhhhc--------------cCCceEEEEecCCCcCchhHhh--hcceeeecC
Q psy879 103 DEADSMTDG-----------A-QQALRRTMEIY--------------SNTTRFALACNNSEKIIEPIQS--RCAMLRYNK 154 (317)
Q Consensus 103 DE~d~l~~~-----------~-~~~ll~~le~~--------------~~~~~~il~~~~~~~l~~~i~s--R~~~i~f~~ 154 (317)
||+|.+.+. . ...|+..++.+ ...+.+|.|||+++.+++++++ |+..+ |..
T Consensus 219 DEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~l 297 (413)
T PLN00020 219 NDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWA 297 (413)
T ss_pred ehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCC
Confidence 999987542 1 24567766542 3457789999999999999999 77664 458
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q psy879 155 LTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGD 190 (317)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd 190 (317)
|+.++...++..++++.+ ++...+..++....|-
T Consensus 298 Pd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred CCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 999999999999888765 5578888888887763
No 146
>KOG1942|consensus
Probab=99.64 E-value=2e-14 Score=118.82 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=100.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC-------------CcCchhHhhhcceeeecCCCHHHHHHH
Q psy879 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS-------------EKIIEPIQSRCAMLRYNKLTDAQLLSK 163 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~-------------~~l~~~i~sR~~~i~f~~~~~~~~~~~ 163 (317)
+.|+||||++.|.-+....|.+.+|.+-. .++||++|.- +.+++.+..|..+++-.++++++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 68999999999999999999999997544 4577877752 368899999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHh---hh--CCCcccHHHHHhh
Q psy879 164 VIEICEKENISHTNDGLEAIVFT-AQGDMRQALNNLQST---HN--GFGHVTAEYVFKV 216 (317)
Q Consensus 164 l~~~~~~~~~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~---~~--~~~~i~~~~v~~~ 216 (317)
+..+++.+++.++++++..++.. +..++|.++.+|--+ +. +.+.|..++|+++
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 99999999999999999999976 467899999988532 22 5557777777653
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=7.4e-15 Score=140.62 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=138.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCceEEecCCCC----cChH
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF-----KDAVLELNASND----RGID 76 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~~~~~~~~----~~~~ 76 (317)
-..++.++|++..++.+...+.....++++|+||||+|||++++.++..+..... +..++.++.... ....
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~G 261 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhh
Confidence 3457889999999999888888776678999999999999999999987643221 122233221110 0011
Q ss_pred H----HHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH---------HHHHHHHHHhhhccCCceEEEEecCCC-----c
Q psy879 77 T----VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD---------GAQQALRRTMEIYSNTTRFALACNNSE-----K 138 (317)
Q Consensus 77 ~----i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~---------~~~~~ll~~le~~~~~~~~il~~~~~~-----~ 138 (317)
+ ++..+..+.. ..+.+++|||+|.+.. +..+.|..+++. +...+|.+|+.++ .
T Consensus 262 e~e~rl~~l~~~l~~-------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 262 DFEKRFKALLKQLEQ-------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred hHHHHHHHHHHHHHh-------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhh
Confidence 2 2222222221 3467999999998731 234456666663 5677888887653 4
Q ss_pred CchhHhhhcceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHhhhC----
Q psy879 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEICE----KENISHTNDGLEAIVFTAQG------DMRQALNNLQSTHNG---- 204 (317)
Q Consensus 139 l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~~~g------d~r~~i~~l~~~~~~---- 204 (317)
.++++.+||+.|.+++|+.++...+|..... .+++.++++++...+..+.. -+.+++++++.++..
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~ 412 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM 412 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC
Confidence 6899999999999999999999999987543 35788999999887765532 366999999877641
Q ss_pred -----CCcccHHHHHhh
Q psy879 205 -----FGHVTAEYVFKV 216 (317)
Q Consensus 205 -----~~~i~~~~v~~~ 216 (317)
...++.++|.++
T Consensus 413 ~~~~~~~~v~~~~i~~v 429 (758)
T PRK11034 413 PVSKRKKTVNVADIESV 429 (758)
T ss_pred cccccccccChhhHHHH
Confidence 223566666554
No 148
>KOG0731|consensus
Probab=99.63 E-value=1.6e-14 Score=134.94 Aligned_cols=200 Identities=18% Similarity=0.265 Sum_probs=140.9
Q ss_pred CCCCcccCCHHHHHHHHHHHh---c--------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---
Q psy879 7 QTFSDIVGNEDTVERLKVFSS---S--------GNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~---~--------~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--- 71 (317)
-+|.|+.|.+++++.|..++. + -++|. +||+||||||||.+|+++|.+- +.+++.++++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSEFvE 382 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSEFVE 382 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHHHHH
Confidence 469999999999998877653 2 24566 9999999999999999999983 66788777764
Q ss_pred ---CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH---------------HHHHHHHHhhhc--cCCceEEE
Q psy879 72 ---DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG---------------AQQALRRTMEIY--SNTTRFAL 131 (317)
Q Consensus 72 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~---------------~~~~ll~~le~~--~~~~~~il 131 (317)
..+...+++.+..... ..+.+++|||+|..... ..|.|+--|+.. ...++++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~-------~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARK-------NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred HhcccchHHHHHHHHHhhc-------cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 2234445555544322 45889999999976421 234444445432 34566777
Q ss_pred EecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHhh--
Q psy879 132 ACNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQSTH-- 202 (317)
Q Consensus 132 ~~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~~-- 202 (317)
+||+++-+++++++-... +....|+.....+++.-.+++-....++..+..++..+.| |+..+.|+....+
T Consensus 456 ~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 456 ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH
Confidence 899999999999875544 9999999999999999988766665456666678877655 4444444443222
Q ss_pred hCCCcccHHHHHhhcC
Q psy879 203 NGFGHVTAEYVFKVCD 218 (317)
Q Consensus 203 ~~~~~i~~~~v~~~~~ 218 (317)
.+...|+.+++..+++
T Consensus 536 ~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 536 KGLREIGTKDLEYAIE 551 (774)
T ss_pred hccCccchhhHHHHHH
Confidence 2566788877766554
No 149
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.1e-14 Score=133.63 Aligned_cols=166 Identities=21% Similarity=0.328 Sum_probs=120.1
Q ss_pred cccCCHHHHHHHHHHHh------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH--
Q psy879 11 DIVGNEDTVERLKVFSS------SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI-- 82 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~------~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 82 (317)
+.+|-+++++++..++. +-+.|.++|+||||+|||++++.+|+.+.. .|+.+.-...+...+||..-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R-----kfvR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR-----KFVRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC-----CEEEEecCccccHHHhcccccc
Confidence 56788888888777653 222356999999999999999999999843 35555444334444444321
Q ss_pred ----------HHHHhhcccCCCCceeEEEEeCCCCCCHH----HHHHHHHHhh-------------hc--cCCceEEEEe
Q psy879 83 ----------KMFAQQKVTLPPGRHKIVILDEADSMTDG----AQQALRRTME-------------IY--SNTTRFALAC 133 (317)
Q Consensus 83 ----------~~~~~~~~~~~~~~~~vliiDE~d~l~~~----~~~~ll~~le-------------~~--~~~~~~il~~ 133 (317)
..+... ...+.|+++||+|+|..+ -..+||..|+ .+ =+++.||+|+
T Consensus 399 YIGamPGrIiQ~mkka-----~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 399 YIGAMPGKIIQGMKKA-----GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred ccccCChHHHHHHHHh-----CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 111111 135789999999999754 4678888876 11 1467799999
Q ss_pred cCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHh
Q psy879 134 NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC-----EKE-----NISHTNDGLEAIVFT 186 (317)
Q Consensus 134 ~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~~~~l~~~ 186 (317)
|..+.++.+++.|..+|++..|+++|-.++.+.++ +.. .+.++++++..+++.
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~ 536 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY 536 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHH
Confidence 99999999999999999999999999888877653 333 356789998887754
No 150
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.62 E-value=7.8e-14 Score=119.90 Aligned_cols=198 Identities=17% Similarity=0.162 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEE-ecCCC------------------CcChH
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLE-LNASN------------------DRGID 76 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~-~~~~~------------------~~~~~ 76 (317)
..+...+...++.+. +.++++||+|+||||+++.+++.+.+.. ..... .+... .....
T Consensus 29 ~~~~~~l~~~~~~~~-~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~ 105 (269)
T TIGR03015 29 KRAMAYLEYGLSQRE-GFILITGEVGAGKTTLIRNLLKRLDQER--VVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKA 105 (269)
T ss_pred HHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHhcCCCC--eEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHH
Confidence 445555665565443 3489999999999999999999875321 11111 11100 00000
Q ss_pred HHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc---cCCceEEEEecCCC------cCchhHhhhc
Q psy879 77 TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY---SNTTRFALACNNSE------KIIEPIQSRC 147 (317)
Q Consensus 77 ~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~---~~~~~~il~~~~~~------~l~~~i~sR~ 147 (317)
.....+..+.... ...+...+++|||++.+.....+.|..+.+.. .....+++++.... .-..++.+|+
T Consensus 106 ~~~~~l~~~l~~~--~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 106 ALLRELEDFLIEQ--FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRI 183 (269)
T ss_pred HHHHHHHHHHHHH--HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhhe
Confidence 1111111111000 01245679999999999988777765544421 12234455554321 1234678885
Q ss_pred c-eeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHhh-----hCCCcccHHHHHhhc
Q psy879 148 A-MLRYNKLTDAQLLSKVIEICEKEN----ISHTNDGLEAIVFTAQGDMRQALNNLQSTH-----NGFGHVTAEYVFKVC 217 (317)
Q Consensus 148 ~-~i~f~~~~~~~~~~~l~~~~~~~~----~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~-----~~~~~i~~~~v~~~~ 217 (317)
. .+++++++.+++..++...+...+ ..+++++++.+.+.++|++|.+...+..+. .+.+.|+.++|..++
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVI 263 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4 489999999999999999887654 368899999999999999999777666542 256788888887654
Q ss_pred C
Q psy879 218 D 218 (317)
Q Consensus 218 ~ 218 (317)
.
T Consensus 264 ~ 264 (269)
T TIGR03015 264 A 264 (269)
T ss_pred H
Confidence 4
No 151
>KOG0727|consensus
Probab=99.62 E-value=2.7e-14 Score=115.65 Aligned_cols=154 Identities=19% Similarity=0.333 Sum_probs=109.3
Q ss_pred CCCcccCCHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---
Q psy879 8 TFSDIVGNEDTVERLKVFSSS-----------G-NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--- 71 (317)
++.|+-|-+-.++.++.+++- | .+|. +|+|||||||||.+++++|+.- ...++.+.++.
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvvgsefvq 227 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQ 227 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeeccHHHHH
Confidence 467777766555556655431 2 2333 9999999999999999999863 33456655542
Q ss_pred ---CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhh-----ccCCceEEEE
Q psy879 72 ---DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEI-----YSNTTRFALA 132 (317)
Q Consensus 72 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~-----~~~~~~~il~ 132 (317)
..++.-+++.+..... ..+.+++|||+|.+.. +.|..|+.++.. ...++.+|++
T Consensus 228 kylgegprmvrdvfrlake-------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKE-------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred HHhccCcHHHHHHHHHHhc-------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 2345556666555433 3578999999997632 356666666653 3457889999
Q ss_pred ecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCC
Q psy879 133 CNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENI 173 (317)
Q Consensus 133 ~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~ 173 (317)
||..+.++|++.+-... ++|+.++..+-+-+...+..+-++
T Consensus 301 tnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l 344 (408)
T KOG0727|consen 301 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL 344 (408)
T ss_pred cCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC
Confidence 99999999999876655 999999888888888777765544
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=9.1e-15 Score=143.02 Aligned_cols=195 Identities=17% Similarity=0.234 Sum_probs=140.3
Q ss_pred cCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCceEEecCCCC----cC
Q psy879 4 YRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF-----KDAVLELNASND----RG 74 (317)
Q Consensus 4 y~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~~~~~~~~----~~ 74 (317)
-+...++.++|++..++.+...+.....+|++|+||||+|||++++.+|..+..... +..++.++.... ..
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~ 252 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY 252 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC
Confidence 356678999999999999999998877778999999999999999999998743211 234555553211 11
Q ss_pred hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------HHHHHHHHHhhhccCCceEEEEecCCC-----cCch
Q psy879 75 IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------GAQQALRRTMEIYSNTTRFALACNNSE-----KIIE 141 (317)
Q Consensus 75 ~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------~~~~~ll~~le~~~~~~~~il~~~~~~-----~l~~ 141 (317)
..++.+.+..+..... ...+.|+||||+|.+.. +..+.|...+.. +...+|.+|+... ...+
T Consensus 253 ~ge~e~rl~~i~~~~~---~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 253 RGEFEERLKRIFDEIQ---ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred ccHHHHHHHHHHHHHH---hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCH
Confidence 1222223332222110 12467999999997753 245667777763 5677888887653 4679
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCC---C---HHHHHHHHHHhhh
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICE----KENISHTNDGLEAIVFTAQG---D---MRQALNNLQSTHN 203 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~~~g---d---~r~~i~~l~~~~~ 203 (317)
++.+||+.+.+..++.++...++..... ..++.++++++..++..+++ | +++|+++|+.++.
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 9999999999999999998888775432 24677899999988887764 3 8899999987665
No 153
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=2.1e-14 Score=138.93 Aligned_cols=179 Identities=17% Similarity=0.248 Sum_probs=124.1
Q ss_pred CcccCCHHHHHHHHHHHhc--------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC--------
Q psy879 10 SDIVGNEDTVERLKVFSSS--------GNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND-------- 72 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-------- 72 (317)
..++||+++++.+..++.. +++. +++|+||+|+|||++|+++|+.+.+ .++.++.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcccHHH
Confidence 3578999999998887763 1232 4999999999999999999999732 2333332211
Q ss_pred --------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEe
Q psy879 73 --------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALAC 133 (317)
Q Consensus 73 --------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~ 133 (317)
.+.+........+.. ..+.||++||+|++.++.++.|++++++. -.++++|+|+
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~-------~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRK-------HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHh-------CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 111111111111111 35789999999999999999999999864 2467788888
Q ss_pred cCCC-------------------------cCchhHhhhcc-eeeecCCCHHHHHHHHHHHHHH-------c--CCCCCHH
Q psy879 134 NNSE-------------------------KIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICEK-------E--NISHTND 178 (317)
Q Consensus 134 ~~~~-------------------------~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~~-------~--~~~i~~~ 178 (317)
|... .+.|.+.+|+. ++.|+|++.+++.+++...+.. . .+.++++
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~ 681 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDD 681 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHH
Confidence 7531 25688899996 5999999999999998876542 2 2567899
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHH
Q psy879 179 GLEAIVFTA---QGDMRQALNNLQS 200 (317)
Q Consensus 179 ~~~~l~~~~---~gd~r~~i~~l~~ 200 (317)
++++++... ....|..-..++.
T Consensus 682 a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 682 AKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHHHHHhCCCcccCchHHHHHHHH
Confidence 999988764 2234444444443
No 154
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.61 E-value=4.9e-14 Score=123.13 Aligned_cols=209 Identities=19% Similarity=0.210 Sum_probs=129.6
Q ss_pred CCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-------CCCC---CCc---------------
Q psy879 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-------GPSF---KDA--------------- 63 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~-------~~~~---~~~--------------- 63 (317)
|..++||++++..|.-.+-.....|+++.|++|+||||++++++..+. ++.. ..+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 788999999999876666565566899999999999999999998862 1100 000
Q ss_pred ----------eEEecC--C--CCcChHHHHHHHH--HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc---
Q psy879 64 ----------VLELNA--S--NDRGIDTVRNKIK--MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS--- 124 (317)
Q Consensus 64 ----------~~~~~~--~--~~~~~~~i~~~~~--~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~--- 124 (317)
+.++.. . ...+..++...+. .+...+..+..+.+.++++||++.+.+..|+.|++.|++..
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v 162 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVV 162 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEE
Confidence 011000 0 0111112222111 01111112223456899999999999999999999997531
Q ss_pred ----------CCceEEEEecCCC-cCchhHhhhcce-eeecCCCH-HHHHHHHHHHHH----------------------
Q psy879 125 ----------NTTRFALACNNSE-KIIEPIQSRCAM-LRYNKLTD-AQLLSKVIEICE---------------------- 169 (317)
Q Consensus 125 ----------~~~~~il~~~~~~-~l~~~i~sR~~~-i~f~~~~~-~~~~~~l~~~~~---------------------- 169 (317)
....+|.+.|..+ .+.+++..|+.. +.+.+++. ++..+++.....
T Consensus 163 ~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~ 242 (337)
T TIGR02030 163 EREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAK 242 (337)
T ss_pred EECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHH
Confidence 2223333344333 688999999987 77777765 554455544210
Q ss_pred -------HcCCCCCHHHHHHHHHh---cCC-CHHHHHHHHHHhh-----hCCCcccHHHHHhhc
Q psy879 170 -------KENISHTNDGLEAIVFT---AQG-DMRQALNNLQSTH-----NGFGHVTAEYVFKVC 217 (317)
Q Consensus 170 -------~~~~~i~~~~~~~l~~~---~~g-d~r~~i~~l~~~~-----~~~~~i~~~~v~~~~ 217 (317)
-..+.++++.++++++. .+. +.|..+..++.+- .+...++.+||..+.
T Consensus 243 I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a 306 (337)
T TIGR02030 243 IVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVA 306 (337)
T ss_pred HHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 13566788887777654 233 4788777775422 266789999987643
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=6.8e-14 Score=136.87 Aligned_cols=187 Identities=16% Similarity=0.237 Sum_probs=127.1
Q ss_pred CCcccCCHHHHHHHHHHHhcC--------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH
Q psy879 9 FSDIVGNEDTVERLKVFSSSG--------NV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR 79 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~ 79 (317)
...++||+.+++.+...+... ++ .+++|+||+|+|||++|+++++.+.+.. ..++.++++.........
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~--~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD--DAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC--CcEEEEEhHHhhhhhhHH
Confidence 457889999999988877632 22 2499999999999999999999886443 234545443221111111
Q ss_pred HHHH------------HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC
Q psy879 80 NKIK------------MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS 136 (317)
Q Consensus 80 ~~~~------------~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~ 136 (317)
..++ .+... . ...++.||++||++++.++.++.|++++++. -.++++|+|||..
T Consensus 645 ~LiG~~pgy~g~~~~g~l~~~-v--~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g 721 (857)
T PRK10865 645 RLVGAPPGYVGYEEGGYLTEA-V--RRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG 721 (857)
T ss_pred HHhCCCCcccccchhHHHHHH-H--HhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcc
Confidence 1110 00000 0 0134579999999999999999999999864 2456688888862
Q ss_pred -------------------------CcCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHH
Q psy879 137 -------------------------EKIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEK-------EN--ISHTNDGLE 181 (317)
Q Consensus 137 -------------------------~~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~-------~~--~~i~~~~~~ 181 (317)
..+.|.+.+|+ .++.|.|++.+++..++...+.. .+ +.+++++++
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~ 801 (857)
T PRK10865 722 SDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALK 801 (857)
T ss_pred hHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHH
Confidence 13568899999 66999999999999887765543 23 457899999
Q ss_pred HHHHhcC---CCHHHHHHHHHH
Q psy879 182 AIVFTAQ---GDMRQALNNLQS 200 (317)
Q Consensus 182 ~l~~~~~---gd~r~~i~~l~~ 200 (317)
.++.... ...|.+-+.++.
T Consensus 802 ~L~~~gy~~~~GARpL~r~I~~ 823 (857)
T PRK10865 802 LLSENGYDPVYGARPLKRAIQQ 823 (857)
T ss_pred HHHHcCCCccCChHHHHHHHHH
Confidence 9987642 135555555544
No 156
>KOG0742|consensus
Probab=99.61 E-value=9.8e-15 Score=125.67 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=114.3
Q ss_pred CCCC-CCcccCCHHHHHHHHHHHh--------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEec---CCCC
Q psy879 5 RPQT-FSDIVGNEDTVERLKVFSS--------SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN---ASND 72 (317)
Q Consensus 5 ~P~~-~~~~~g~~~~~~~l~~~l~--------~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~---~~~~ 72 (317)
+++. |+++|-++.+.+.+..... ++.+.|++||||||||||.+|+.+|+.- +- .+.++... +...
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-Gl--DYA~mTGGDVAPlG~ 425 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-GL--DYAIMTGGDVAPLGA 425 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-CC--ceehhcCCCccccch
Confidence 4555 8999999998888877643 3445679999999999999999999872 22 22222222 2222
Q ss_pred cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH---------H---HHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD---------G---AQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~---------~---~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
..+..|.+++.+...+ .+.-++||||+|.+.- . +.|+|+---.+.+..++++++||.+..++
T Consensus 426 qaVTkiH~lFDWakkS------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKS------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred HHHHHHHHHHHHHhhc------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchh
Confidence 3445566666554433 4677999999996532 2 34555444456677889999999999999
Q ss_pred hhHhhhcce-eeecCCCHHHHHHHHHHHHHH
Q psy879 141 EPIQSRCAM-LRYNKLTDAQLLSKVIEICEK 170 (317)
Q Consensus 141 ~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~ 170 (317)
-++-.|+.. ++|+.|-++|..++|..++.+
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 999999976 999999999999998887754
No 157
>KOG0743|consensus
Probab=99.60 E-value=5.7e-14 Score=123.09 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=109.6
Q ss_pred CCCCCCcccCCHHHHH----HHHHHHhc-------CCC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC
Q psy879 5 RPQTFSDIVGNEDTVE----RLKVFSSS-------GNV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~----~l~~~l~~-------~~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 71 (317)
+|.+|+.++=.++.++ .|..++++ |++ ..||||||||||||+++-|+|+.| ++.+.+++-+.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIydLeLt~ 270 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYDLELTE 270 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCceEEeeecc
Confidence 5778888887665555 45556553 222 249999999999999999999997 34466666554
Q ss_pred CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH---H---------------HHHHHHHHhhhcc----CCceE
Q psy879 72 DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD---G---------------AQQALRRTMEIYS----NTTRF 129 (317)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~---~---------------~~~~ll~~le~~~----~~~~~ 129 (317)
...-++++..+... ..+.||+|+++|.-.. + ....||.+++..- ...++
T Consensus 271 v~~n~dLr~LL~~t---------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 271 VKLDSDLRHLLLAT---------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred ccCcHHHHHHHHhC---------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 44455566665432 4677999999996421 1 1345888888542 24579
Q ss_pred EEEecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHHH
Q psy879 130 ALACNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEIC 168 (317)
Q Consensus 130 il~~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~ 168 (317)
|+|||+.++++|++.+++.+ +++..-+...++....+.+
T Consensus 342 vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 342 VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred EEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 99999999999999997666 9999999999888888876
No 158
>KOG0738|consensus
Probab=99.60 E-value=7.8e-14 Score=119.45 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=114.0
Q ss_pred CCCcccCCHHHHHHHHHHHh----------cCCC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC---
Q psy879 8 TFSDIVGNEDTVERLKVFSS----------SGNV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND--- 72 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~----------~~~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~--- 72 (317)
.|+|+.|..++++.|+.++- ..+- ..+|++||||||||.+|+++|.+.. ..|+.+..+..
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSsstltSK 284 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSSTLTSK 284 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechhhhhhh
Confidence 59999999999999988753 2222 2499999999999999999999842 23555554431
Q ss_pred -cC-hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH------------HHHHHHHHHhhhcc-----CCceEEEE-
Q psy879 73 -RG-IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD------------GAQQALRRTMEIYS-----NTTRFALA- 132 (317)
Q Consensus 73 -~~-~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~------------~~~~~ll~~le~~~-----~~~~~il~- 132 (317)
++ .+.+-..+-.++.. -.+.+|||||+|.+.. ...+.||-.|+... ...++|++
T Consensus 285 wRGeSEKlvRlLFemARf------yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARF------YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hccchHHHHHHHHHHHHH------hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 12 12222333333322 2577999999998853 23566777776321 23455554
Q ss_pred ecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhcCC
Q psy879 133 CNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISH-TNDGLEAIVFTAQG 189 (317)
Q Consensus 133 ~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~l~~~~~g 189 (317)
||-|-.+++++++|+.. |.++-|+.+.....++..+. .+.. ++-.++.+++.+.|
T Consensus 359 TN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~--~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738|consen 359 TNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR--SVELDDPVNLEDLAERSEG 415 (491)
T ss_pred cCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc--cccCCCCccHHHHHHHhcC
Confidence 77789999999999998 88887877777776666554 2233 34446777776654
No 159
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.60 E-value=8.7e-14 Score=121.49 Aligned_cols=211 Identities=20% Similarity=0.212 Sum_probs=133.5
Q ss_pred CCC-CCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC--CCceE----------------
Q psy879 5 RPQ-TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF--KDAVL---------------- 65 (317)
Q Consensus 5 ~P~-~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~~~~---------------- 65 (317)
+|. .|.+++||++++..|...+.+..+.+++|.|++|||||++++.+++.+.+... ..++.
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREA 90 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhh
Confidence 444 59999999999999998888888778999999999999999999988743210 00111
Q ss_pred -----------------EecCCCCcChHH------HHHHHHHHH--hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHh
Q psy879 66 -----------------ELNASNDRGIDT------VRNKIKMFA--QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120 (317)
Q Consensus 66 -----------------~~~~~~~~~~~~------i~~~~~~~~--~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~l 120 (317)
.+.. ....+. +...+.... ..+..+......++++||++.+.+..|+.|++.|
T Consensus 91 ~~~~~~~~~~~~~~~~~~lp~--~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam 168 (350)
T CHL00081 91 IQNGETIETEKIKIPMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSA 168 (350)
T ss_pred hcccccccceeccccceecCC--CCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHH
Confidence 0000 001111 111111000 0111122356789999999999999999999999
Q ss_pred hhc-------------cCCceEEEEecCCC-cCchhHhhhcce-eeecCCCH-HHHHHHHHHHH----------------
Q psy879 121 EIY-------------SNTTRFALACNNSE-KIIEPIQSRCAM-LRYNKLTD-AQLLSKVIEIC---------------- 168 (317)
Q Consensus 121 e~~-------------~~~~~~il~~~~~~-~l~~~i~sR~~~-i~f~~~~~-~~~~~~l~~~~---------------- 168 (317)
++. +....+|.+.|..+ .+.+.+..|+.. +.+..++. ++-.+++....
T Consensus 169 ~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T CHL00081 169 ASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEES 248 (350)
T ss_pred HhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccc
Confidence 752 12222333333333 689999999987 77777763 44444443321
Q ss_pred -------------HHcCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHh-----hhCCCcccHHHHHhhc
Q psy879 169 -------------EKENISHTNDGLEAIVFTA---Q-GDMRQALNNLQST-----HNGFGHVTAEYVFKVC 217 (317)
Q Consensus 169 -------------~~~~~~i~~~~~~~l~~~~---~-gd~r~~i~~l~~~-----~~~~~~i~~~~v~~~~ 217 (317)
.-..+.+++..+.++++.+ + -++|..+..++.+ ..+...++.+||..+.
T Consensus 249 ~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a 319 (350)
T CHL00081 249 QEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVI 319 (350)
T ss_pred cccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 1135678888888777553 2 2588777776542 2267789999887643
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=6.9e-14 Score=137.27 Aligned_cols=187 Identities=17% Similarity=0.225 Sum_probs=130.7
Q ss_pred CcccCCHHHHHHHHHHHhcC--------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 10 SDIVGNEDTVERLKVFSSSG--------NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~--------~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
..++||+++++.+...+... ++. +++|+||+|+|||++|+++++.+.+.. ..++.++.+.......+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~--~~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE--DAMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhhcccchHHH
Confidence 46899999999988887642 222 499999999999999999999986543 2344444432211111111
Q ss_pred HHH------------HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCCC
Q psy879 81 KIK------------MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNSE 137 (317)
Q Consensus 81 ~~~------------~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~~ 137 (317)
.++ .+...- ....+.||++||++++.++.++.|++++++.. .++++|+|||-..
T Consensus 643 l~g~~~g~~g~~~~g~l~~~v---~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~ 719 (852)
T TIGR03346 643 LIGAPPGYVGYEEGGQLTEAV---RRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGS 719 (852)
T ss_pred hcCCCCCccCcccccHHHHHH---HcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcch
Confidence 110 000000 01346799999999999999999999998652 5677999988621
Q ss_pred -------------------------cCchhHhhhcc-eeeecCCCHHHHHHHHHHHHH-------Hc--CCCCCHHHHHH
Q psy879 138 -------------------------KIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICE-------KE--NISHTNDGLEA 182 (317)
Q Consensus 138 -------------------------~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~-------~~--~~~i~~~~~~~ 182 (317)
.+.|.+..|+. ++.|.|++.+++.+++..... .. .+.+++++++.
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~ 799 (852)
T TIGR03346 720 QFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDF 799 (852)
T ss_pred HhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHH
Confidence 14467778884 599999999999888776543 22 25689999999
Q ss_pred HHHhc---CCCHHHHHHHHHHh
Q psy879 183 IVFTA---QGDMRQALNNLQST 201 (317)
Q Consensus 183 l~~~~---~gd~r~~i~~l~~~ 201 (317)
+++.. .++.|.+-+.++..
T Consensus 800 L~~~~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 800 LAEAGYDPVYGARPLKRAIQRE 821 (852)
T ss_pred HHHhCCCCCCCchhHHHHHHHH
Confidence 99873 47788888887764
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.59 E-value=1.1e-14 Score=111.08 Aligned_cols=109 Identities=24% Similarity=0.344 Sum_probs=80.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADS 107 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 107 (317)
++|+||||+|||++++.+++.+ +..++.+++.... ....+...+...... +.+.|++|||+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS------AKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT------STSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cccccccccccccccccccccccccccccccccc------ccceeeeeccchh
Confidence 6899999999999999999996 3456777665422 122333333332211 1368999999999
Q ss_pred CCHHH-----------HHHHHHHhhhccC---CceEEEEecCCCcCchhHh-hhcce-eeec
Q psy879 108 MTDGA-----------QQALRRTMEIYSN---TTRFALACNNSEKIIEPIQ-SRCAM-LRYN 153 (317)
Q Consensus 108 l~~~~-----------~~~ll~~le~~~~---~~~~il~~~~~~~l~~~i~-sR~~~-i~f~ 153 (317)
+.... .+.|+..++.... .+.+|++||..+.+.+++. +||.. ++|+
T Consensus 70 l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 70 LFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp TSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 98775 7888888887665 4789999999999999999 99987 5554
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.4e-14 Score=132.98 Aligned_cols=188 Identities=17% Similarity=0.223 Sum_probs=130.0
Q ss_pred CcccCCHHHHHHHHHHHhcC--------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 10 SDIVGNEDTVERLKVFSSSG--------NV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
..++||++++..+..+++.. ++ .+++|.||+|+|||.+|+++|..|.+... .++.++-+.......+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~--aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQ--ALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCc--cceeechHHHHHHHHHHH
Confidence 46789999999999888631 22 24999999999999999999999976543 334444333222223332
Q ss_pred HHHHHHhhcccC----------CCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCCC--
Q psy879 81 KIKMFAQQKVTL----------PPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNSE-- 137 (317)
Q Consensus 81 ~~~~~~~~~~~~----------~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~~-- 137 (317)
.++. ....+.+ -..++.||++||+++..++..|.|++.|++.. .++++|+|+|--.
T Consensus 569 LIGa-PPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~ 647 (786)
T COG0542 569 LIGA-PPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEE 647 (786)
T ss_pred HhCC-CCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHH
Confidence 2221 0000000 01358899999999999999999999999532 5788999988321
Q ss_pred --------------------------cCchhHhhhcc-eeeecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHH
Q psy879 138 --------------------------KIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICE-------KEN--ISHTNDGLE 181 (317)
Q Consensus 138 --------------------------~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~~~ 181 (317)
.+.|.+..|.. +|.|.+++.+++.+++...+. ..+ +.+++++.+
T Consensus 648 i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~ 727 (786)
T COG0542 648 ILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKD 727 (786)
T ss_pred HHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHH
Confidence 24588888988 699999999999888776543 334 356899999
Q ss_pred HHHHhcC---CCHHHHHHHHHH
Q psy879 182 AIVFTAQ---GDMRQALNNLQS 200 (317)
Q Consensus 182 ~l~~~~~---gd~r~~i~~l~~ 200 (317)
.++..+. ...|-+...++.
T Consensus 728 ~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 728 FLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHhccCCCcCchHHHHHHHH
Confidence 9987753 335555555544
No 163
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.59 E-value=3.7e-14 Score=134.94 Aligned_cols=198 Identities=17% Similarity=0.210 Sum_probs=135.2
Q ss_pred CCCCcccCCHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---
Q psy879 7 QTFSDIVGNEDTVERLKVFSS-----------SGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~-----------~~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--- 71 (317)
.+|+++.|.+..++.+...+. .+..| +++|+||||+|||++++++++.+. .+++.+++++
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-----~~f~~is~~~~~~ 223 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSDFVE 223 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEehHHhHH
Confidence 458888998888877665542 12223 499999999999999999999862 3455555432
Q ss_pred ---CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhhcc--CCceEEEE
Q psy879 72 ---DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEIYS--NTTRFALA 132 (317)
Q Consensus 72 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~~~--~~~~~il~ 132 (317)
..+...++..+..... ..+.|++|||+|.+... ..+.|+..|+... ..+++|.+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~-------~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaa 296 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKK-------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred hhhcccHHHHHHHHHHHHh-------cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEe
Confidence 1223344444443321 35689999999988421 3455665566433 35678889
Q ss_pred ecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHhhh--
Q psy879 133 CNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQSTHN-- 203 (317)
Q Consensus 133 ~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~~~-- 203 (317)
||.++.+++++.+ |+.. +.|+.|+.++..+++...+++..+.- +..+..+++.+.| |+..+++.....+.
T Consensus 297 TN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 297 TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred cCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999985 7755 99999999999999998876543321 2234567777776 77777777654333
Q ss_pred CCCcccHHHHHhhc
Q psy879 204 GFGHVTAEYVFKVC 217 (317)
Q Consensus 204 ~~~~i~~~~v~~~~ 217 (317)
+...|+.+++.++.
T Consensus 376 ~~~~i~~~d~~~a~ 389 (644)
T PRK10733 376 NKRVVSMVEFEKAK 389 (644)
T ss_pred CCCcccHHHHHHHH
Confidence 45678888876654
No 164
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=5.1e-14 Score=126.31 Aligned_cols=173 Identities=27% Similarity=0.318 Sum_probs=109.2
Q ss_pred CC-cccCCHHHHHHHHHHHhc-------C---------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC
Q psy879 9 FS-DIVGNEDTVERLKVFSSS-------G---------NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71 (317)
Q Consensus 9 ~~-~~~g~~~~~~~l~~~l~~-------~---------~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 71 (317)
++ .++||+++++.+..++.+ + ..++++|+||||||||++|+++++.+.. +++.+++..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~-----pf~~id~~~ 143 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV-----PFAIADATT 143 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC-----Cceecchhh
Confidence 44 479999999988666521 1 1246999999999999999999998632 344444332
Q ss_pred C-----cChHHHHHHHHHHHhh-cccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhhcc-------
Q psy879 72 D-----RGIDTVRNKIKMFAQQ-KVTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEIYS------- 124 (317)
Q Consensus 72 ~-----~~~~~i~~~~~~~~~~-~~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~~~------- 124 (317)
. .+. .+...+...... ........+.||+|||+|.+... .|++|+++||...
T Consensus 144 l~~~gyvG~-d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~g 222 (412)
T PRK05342 144 LTEAGYVGE-DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQG 222 (412)
T ss_pred cccCCcccc-hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCC
Confidence 1 111 122222221111 11111246789999999999753 7899999998421
Q ss_pred ------CCceEEEEecC--------C------------------------------C--------------cCchhHhhh
Q psy879 125 ------NTTRFALACNN--------S------------------------------E--------------KIIEPIQSR 146 (317)
Q Consensus 125 ------~~~~~il~~~~--------~------------------------------~--------------~l~~~i~sR 146 (317)
.++++|.|+|- . . .+.|.+..|
T Consensus 223 g~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgR 302 (412)
T PRK05342 223 GRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGR 302 (412)
T ss_pred CcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCC
Confidence 01122222221 0 0 145777888
Q ss_pred cce-eeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHhc
Q psy879 147 CAM-LRYNKLTDAQLLSKVIE----I-------CEKENI--SHTNDGLEAIVFTA 187 (317)
Q Consensus 147 ~~~-i~f~~~~~~~~~~~l~~----~-------~~~~~~--~i~~~~~~~l~~~~ 187 (317)
+.. +.|.+++++++.+++.. . +..+++ .+++++++++++.+
T Consensus 303 ld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 303 LPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 866 89999999999999872 2 223443 57899999999864
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.58 E-value=4e-13 Score=110.01 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=131.1
Q ss_pred ccCCCCCCcccCCHHHHHHH----HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 3 KYRPQTFSDIVGNEDTVERL----KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
...|-.+++++|-+..++.| ..++......|+|++|+.|||||++++++..++...+ ..++++..........+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPEL 97 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHH
Confidence 34567799999977666654 4455555445599999999999999999999975443 56777766544444444
Q ss_pred HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-HHHHHHHHhh----hccCCceEEEEecCCCcCc-------------
Q psy879 79 RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-AQQALRRTME----IYSNTTRFALACNNSEKII------------- 140 (317)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-~~~~ll~~le----~~~~~~~~il~~~~~~~l~------------- 140 (317)
.+ .+... ..+-||++|+...=..+ .-..|..+|| ..|.|+.+..|+|..+-+.
T Consensus 98 ~~---~l~~~------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~e 168 (249)
T PF05673_consen 98 LD---LLRDR------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDE 168 (249)
T ss_pred HH---HHhcC------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccc
Confidence 33 33333 34669999987754433 3445555554 6788888888888643221
Q ss_pred ----------hhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHhcCCCHHHHHHHHHHh
Q psy879 141 ----------EPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGL-----EAIVFTAQGDMRQALNNLQST 201 (317)
Q Consensus 141 ----------~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~-----~~l~~~~~gd~r~~i~~l~~~ 201 (317)
-++..||.. +.|.+++.++-.+++...+.+.|+.++++.+ ..-..+.+.+.|.|-..++.+
T Consensus 169 ih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 169 IHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred cCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 245677776 9999999999999999999999999986443 333344556888887776654
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.57 E-value=3.9e-13 Score=120.83 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=123.5
Q ss_pred cccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC-----CCcChHHHHHHH--H
Q psy879 11 DIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS-----NDRGIDTVRNKI--K 83 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-----~~~~~~~i~~~~--~ 83 (317)
.++|++++++.+..++..|. |++|+||||+|||++|++++....... .+....+. +..+...+.... +
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~---~F~~~~~~fttp~DLfG~l~i~~~~~~g 95 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR---AFEYLMTRFSTPEEVFGPLSIQALKDEG 95 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC---cceeeeeeecCcHHhcCcHHHhhhhhcC
Confidence 57899999999998888887 899999999999999999999863221 12222211 111111111110 1
Q ss_pred HHH-hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc---------CCceE-EEEecCCC---cCchhHhhhcce
Q psy879 84 MFA-QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS---------NTTRF-ALACNNSE---KIIEPIQSRCAM 149 (317)
Q Consensus 84 ~~~-~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~---------~~~~~-il~~~~~~---~l~~~i~sR~~~ 149 (317)
.+. ..+. +-....++++||+..+++..+++|+..|++.. -..++ +++||+.. .+.+++..|+..
T Consensus 96 ~f~r~~~G--~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFli 173 (498)
T PRK13531 96 RYQRLTSG--YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLI 173 (498)
T ss_pred chhhhcCC--ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEE
Confidence 111 0110 00134499999999999999999999996432 12334 55555322 355699999965
Q ss_pred -eeecCCCH-HHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHhc------C----CCHHHH
Q psy879 150 -LRYNKLTD-AQLLSKVIEICE-----------------------KENISHTNDGLEAIVFTA------Q----GDMRQA 194 (317)
Q Consensus 150 -i~f~~~~~-~~~~~~l~~~~~-----------------------~~~~~i~~~~~~~l~~~~------~----gd~r~~ 194 (317)
+..+++++ ++..++|..... -..+.+++...+++.... . -+.|..
T Consensus 174 ri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~ 253 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRW 253 (498)
T ss_pred EEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHH
Confidence 88888863 554556543211 134566777777766442 1 467777
Q ss_pred HHHHHH---hh--hCCCcccHHHHH
Q psy879 195 LNNLQS---TH--NGFGHVTAEYVF 214 (317)
Q Consensus 195 i~~l~~---~~--~~~~~i~~~~v~ 214 (317)
+..+.. .+ .+...++.+|+.
T Consensus 254 ~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 254 KKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 766543 22 267789999886
No 167
>KOG0739|consensus
Probab=99.57 E-value=5.3e-14 Score=116.55 Aligned_cols=223 Identities=18% Similarity=0.206 Sum_probs=134.2
Q ss_pred CCC-CCCcccCCHHHHHHHHHHHh----------cCCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC
Q psy879 5 RPQ-TFSDIVGNEDTVERLKVFSS----------SGNVP--NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71 (317)
Q Consensus 5 ~P~-~~~~~~g~~~~~~~l~~~l~----------~~~~~--~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 71 (317)
+|+ .|+|+.|-+.+++.|+.++- .++.| .+|+||||||||+.+|+++|.+.. ..++.+..++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFSvSSSD 201 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSD 201 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEEeehHH
Confidence 454 59999999999999988742 23322 499999999999999999999852 3466666654
Q ss_pred Cc------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------HHHHHHHHhhhc---cCCceEEE
Q psy879 72 DR------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------AQQALRRTMEIY---SNTTRFAL 131 (317)
Q Consensus 72 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~~~~ll~~le~~---~~~~~~il 131 (317)
.. +..-+.+.+....+ ..+.||+|||+|.+... ....|+-.|... ...+.++.
T Consensus 202 LvSKWmGESEkLVknLFemARe-------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARE-------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHh-------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 21 12233444444333 46889999999988532 123344445422 23455566
Q ss_pred EecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH--HhhhC-CCc
Q psy879 132 ACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ--STHNG-FGH 207 (317)
Q Consensus 132 ~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~--~~~~~-~~~ 207 (317)
+||-+..++.+|++||.. |.++.|.........+-.+..-...+++.....++..+.|--..-+.++- .+... .+.
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 788899999999999988 66666655444433333333323356777788888877653221111110 01011 112
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHH
Q psy879 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239 (317)
Q Consensus 208 i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~ 239 (317)
-+.-+..++.+.+..+.+..++.-+...+...
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga 386 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGA 386 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcch
Confidence 34445556666555544555554444444443
No 168
>KOG1514|consensus
Probab=99.56 E-value=3.5e-13 Score=123.39 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=132.8
Q ss_pred CCHHHHHHHHHHHh----c-CCCceEEEECCCCCCHHHHHHHHHHHHc-----CCCCCCceEEecCCCCcChHHHHHHHH
Q psy879 14 GNEDTVERLKVFSS----S-GNVPNIIISGPPGVGKTTTILCLARILL-----GPSFKDAVLELNASNDRGIDTVRNKIK 83 (317)
Q Consensus 14 g~~~~~~~l~~~l~----~-~~~~~~ll~G~~G~GKt~la~~la~~l~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~ 83 (317)
+++.....+..+++ . +....+++.|-||||||.+++.+.+.|. +.-....++++|+....+..++.+.+-
T Consensus 400 cRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~ 479 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIW 479 (767)
T ss_pred chhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHH
Confidence 55655555555544 3 3323599999999999999999999875 233456788899876656555444331
Q ss_pred HHHh----------------hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc---CCceEEEEecCCC---c-Cc
Q psy879 84 MFAQ----------------QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS---NTTRFALACNNSE---K-II 140 (317)
Q Consensus 84 ~~~~----------------~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~---~~~~~il~~~~~~---~-l~ 140 (317)
.... .....+.....||+|||.|.|....|..|..+++.|. ...++|.++|..+ + +.
T Consensus 480 ~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~ 559 (767)
T KOG1514|consen 480 EALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLM 559 (767)
T ss_pred HhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhc
Confidence 1000 0011133567899999999999999999999998753 3444566666543 3 44
Q ss_pred hhHhhhcce--eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---hcCCCHHHHHHHHHHhhh
Q psy879 141 EPIQSRCAM--LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVF---TAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 141 ~~i~sR~~~--i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~~~gd~r~~i~~l~~~~~ 203 (317)
..+-||... +.|.||+..|+.+++..+++.. -.++..+++.++. ...||.|+|++.++.++.
T Consensus 560 nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 560 NRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred cchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 577888765 9999999999999999987654 2456777766654 457999999999998765
No 169
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.56 E-value=1.9e-13 Score=128.30 Aligned_cols=209 Identities=15% Similarity=0.190 Sum_probs=143.1
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
+++.-+|+.++|+...++.+...++. ....+++|+|++||||+++|+++.... .....+++.++|... ....+..
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s--~r~~~pfv~i~c~~~-~~~~~~~ 265 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS--PRAKRPFVKVNCAAL-SETLLES 265 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeecCCC-CHHHHHH
Confidence 45556799999998877776665542 222369999999999999999999863 223456888888643 2222222
Q ss_pred H-HHHH----H----hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC----
Q psy879 81 K-IKMF----A----QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS---- 136 (317)
Q Consensus 81 ~-~~~~----~----~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~---- 136 (317)
. ++.. . .....+......+++|||++.|....|..|++++++.. .++++|++|+..
T Consensus 266 ~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~ 345 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345 (534)
T ss_pred HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH
Confidence 1 1100 0 00001122457899999999999999999999998532 246788887754
Q ss_pred ---CcCchhHhhhcce--eeecCCC--HHHHHHHHHHHHH----HcC--CCCCHHHHHHHHHh-cCCCHHHHHHHHHHhh
Q psy879 137 ---EKIIEPIQSRCAM--LRYNKLT--DAQLLSKVIEICE----KEN--ISHTNDGLEAIVFT-AQGDMRQALNNLQSTH 202 (317)
Q Consensus 137 ---~~l~~~i~sR~~~--i~f~~~~--~~~~~~~l~~~~~----~~~--~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~ 202 (317)
..+.+.+..|+.. +.+||+. .+++..++...+. ..+ ..++++++..+... ..||+|+..+.++.++
T Consensus 346 ~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 346 VAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTA 425 (534)
T ss_pred HHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 2466777788765 7788887 3556555444433 222 56899999998877 5999999999999766
Q ss_pred h--CCCcccHHHHH
Q psy879 203 N--GFGHVTAEYVF 214 (317)
Q Consensus 203 ~--~~~~i~~~~v~ 214 (317)
. ....|+.+++.
T Consensus 426 ~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 426 TLSRSGTITRSDFS 439 (534)
T ss_pred HhCCCCcccHHHCc
Confidence 4 34578877764
No 170
>KOG2004|consensus
Probab=99.56 E-value=1.5e-13 Score=125.79 Aligned_cols=164 Identities=21% Similarity=0.347 Sum_probs=116.5
Q ss_pred CcccCCHHHHHHHHHHHhcC----CC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH---
Q psy879 10 SDIVGNEDTVERLKVFSSSG----NV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN--- 80 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~----~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~--- 80 (317)
+|.+|-+++++++..++.=| .. +.+.|+||||+|||++++.+|+.|... |+.++-..-....+|+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-----FfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-----FFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-----eEEEeccccccHHhhcccce
Confidence 46788899999988887522 22 359999999999999999999998433 34433322222222221
Q ss_pred ------------HHHHHHhhcccCCCCceeEEEEeCCCCCCH----HHHHHHHHHhh-------------hc--cCCceE
Q psy879 81 ------------KIKMFAQQKVTLPPGRHKIVILDEADSMTD----GAQQALRRTME-------------IY--SNTTRF 129 (317)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~~~vliiDE~d~l~~----~~~~~ll~~le-------------~~--~~~~~~ 129 (317)
.++.. ...+.+++|||+|++.. +-..+||..|+ -| -..+.|
T Consensus 486 TYVGAMPGkiIq~LK~v--------~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKV--------KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eeeccCChHHHHHHHhh--------CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 12211 13578999999999863 34677877775 11 135668
Q ss_pred EEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHh
Q psy879 130 ALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE-----K-----ENISHTNDGLEAIVFT 186 (317)
Q Consensus 130 il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~-----~-----~~~~i~~~~~~~l~~~ 186 (317)
|+|+|..+.++++++.|..+|+.+.|..+|-.++...++- . +.+++++.++..+++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~ 624 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER 624 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH
Confidence 9999999999999999999999999999998888776542 2 4567888887666644
No 171
>KOG0728|consensus
Probab=99.56 E-value=1.1e-13 Score=112.03 Aligned_cols=128 Identities=18% Similarity=0.270 Sum_probs=95.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC------CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCC
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN------DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEA 105 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~ 105 (317)
..+++|||||+|||.+|+++|..-.| .++.++.+. ..+..-+++.+-.... ..+.++++||+
T Consensus 182 KGvlLygppgtGktLlaraVahht~c-----~firvsgselvqk~igegsrmvrelfvmare-------hapsiifmdei 249 (404)
T KOG0728|consen 182 KGVLLYGPPGTGKTLLARAVAHHTDC-----TFIRVSGSELVQKYIGEGSRMVRELFVMARE-------HAPSIIFMDEI 249 (404)
T ss_pred cceEEecCCCCchhHHHHHHHhhcce-----EEEEechHHHHHHHhhhhHHHHHHHHHHHHh-------cCCceEeeecc
Confidence 35999999999999999999987433 355555432 1223344555444433 35789999999
Q ss_pred CCCC-----------HHHHHHHHHHhh-----hccCCceEEEEecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHH
Q psy879 106 DSMT-----------DGAQQALRRTME-----IYSNTTRFALACNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 106 d~l~-----------~~~~~~ll~~le-----~~~~~~~~il~~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~ 166 (317)
|.+. .+.|...+.++. +...++.+|++||..+-+++++.+-..+ ++|+||+++...++|+-
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 9873 235666666665 3457889999999999999999877765 99999999999999887
Q ss_pred HHHHc
Q psy879 167 ICEKE 171 (317)
Q Consensus 167 ~~~~~ 171 (317)
..++-
T Consensus 330 hsrkm 334 (404)
T KOG0728|consen 330 HSRKM 334 (404)
T ss_pred hhhhh
Confidence 76653
No 172
>KOG1968|consensus
Probab=99.56 E-value=3.1e-14 Score=136.72 Aligned_cols=196 Identities=27% Similarity=0.412 Sum_probs=151.3
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcC-----------CC---ce--EEEECCCCCCHHHHHHHHHHHHcCCCCCCce
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSG-----------NV---PN--IIISGPPGVGKTTTILCLARILLGPSFKDAV 64 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~-----------~~---~~--~ll~G~~G~GKt~la~~la~~l~~~~~~~~~ 64 (317)
++||+|.+..+++|+......+..++..- .+ .. ++++||||.|||+.++..|+.+ +..+
T Consensus 311 ~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~-----g~~v 385 (871)
T KOG1968|consen 311 TEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL-----GFKV 385 (871)
T ss_pred ccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----ccce
Confidence 47999999999999887777777766533 11 12 4899999999999999999986 4468
Q ss_pred EEecCCCCcChHHHHHHHHHHHhhccc-----------CCCCceeEEEEeCCCCCCHHH---HHHHHHHhhhccCCceEE
Q psy879 65 LELNASNDRGIDTVRNKIKMFAQQKVT-----------LPPGRHKIVILDEADSMTDGA---QQALRRTMEIYSNTTRFA 130 (317)
Q Consensus 65 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~vliiDE~d~l~~~~---~~~ll~~le~~~~~~~~i 130 (317)
++.|+++.++...+.+.++.+...... ...+...||++||+|.+..++ ...+-.+.+ .....+|
T Consensus 386 ~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~~Piv 463 (871)
T KOG1968|consen 386 VEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSSRPLV 463 (871)
T ss_pred eecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hccCCeE
Confidence 999998777666666655543322111 112345599999999998743 445555555 3445688
Q ss_pred EEecCCCcC-chhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q psy879 131 LACNNSEKI-IEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 131 l~~~~~~~l-~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~ 203 (317)
++||+...- ..++.+-|..++|+.|+...+..++..++..+++.++++.++.+.+.++||+|++++.++.+..
T Consensus 464 ~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 464 CTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSL 537 (871)
T ss_pred EEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhc
Confidence 999887543 4566677788999999999999999999999999999999999999999999999999998743
No 173
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.6e-13 Score=127.84 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=132.3
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 73 (317)
-+|+++.|-+.+++.+...+.. + +++ .+|||||||||||++|+++|.+. +..++.+..++..
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~ 313 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELL 313 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHh
Confidence 3588888888777776665431 2 223 49999999999999999999974 3345555544211
Q ss_pred ------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhh--hccCCceEEEEec
Q psy879 74 ------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTME--IYSNTTRFALACN 134 (317)
Q Consensus 74 ------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le--~~~~~~~~il~~~ 134 (317)
....+++.+..... ..+.||++||+|.+.. ...+.|+..++ +...++.+|.+||
T Consensus 314 sk~vGesek~ir~~F~~A~~-------~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN 386 (494)
T COG0464 314 SKWVGESEKNIRELFEKARK-------LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN 386 (494)
T ss_pred ccccchHHHHHHHHHHHHHc-------CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC
Confidence 12334444444332 4578999999998742 35677777775 4445666788999
Q ss_pred CCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCC-CHHHHHHHHHHhhh-----C
Q psy879 135 NSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENIS-HTNDGLEAIVFTAQG-DMRQALNNLQSTHN-----G 204 (317)
Q Consensus 135 ~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~~~g-d~r~~i~~l~~~~~-----~ 204 (317)
.++.+++++.+ |+.. +.|++|+.++..++++......+.. .++-.+..+++.+.| +-..+...++.++. .
T Consensus 387 ~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 387 RPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred CccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 8887 9999999999999999988755543 234445666665443 22333333333322 1
Q ss_pred -CCcccHHHHHhhcC
Q psy879 205 -FGHVTAEYVFKVCD 218 (317)
Q Consensus 205 -~~~i~~~~v~~~~~ 218 (317)
...++.+++..+..
T Consensus 467 ~~~~~~~~~~~~a~~ 481 (494)
T COG0464 467 RRREVTLDDFLDALK 481 (494)
T ss_pred ccCCccHHHHHHHHH
Confidence 23456655544433
No 174
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.54 E-value=2e-13 Score=137.00 Aligned_cols=125 Identities=7% Similarity=0.029 Sum_probs=86.1
Q ss_pred CceeEEEEeCCCCCCHHH-----HHHHHHHhhhc-----cCCceEEEEecCCCcCchhHhh--hcce-eeecCCCHHHHH
Q psy879 95 GRHKIVILDEADSMTDGA-----QQALRRTMEIY-----SNTTRFALACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLL 161 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~-----~~~ll~~le~~-----~~~~~~il~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~ 161 (317)
..+.||+|||+|.+.... .+.|+..|... ..++++|.+||.++.++|++.+ |+.. |.++.|+..+..
T Consensus 1731 ~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~ 1810 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQR 1810 (2281)
T ss_pred CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHH
Confidence 358899999999997542 56677777632 3456788899999999999998 7765 889988887777
Q ss_pred HHHHHHHHHcCCCCCHH--HHHHHHHhcCC----CHHHHHHHHHHhhh--CCCcccHHHHHhhcCC
Q psy879 162 SKVIEICEKENISHTND--GLEAIVFTAQG----DMRQALNNLQSTHN--GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 162 ~~l~~~~~~~~~~i~~~--~~~~l~~~~~g----d~r~~i~~l~~~~~--~~~~i~~~~v~~~~~~ 219 (317)
+++.......|+.+++. .++.++..+.| |+..+.++.-..+. +...|+.+++..++..
T Consensus 1811 kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1811 KHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1876 (2281)
T ss_pred HHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 77665544456666543 25777877644 45544444433222 4567888888776553
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.54 E-value=2.7e-13 Score=105.24 Aligned_cols=139 Identities=27% Similarity=0.315 Sum_probs=94.1
Q ss_pred cCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHH--HHhhcc
Q psy879 13 VGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKM--FAQQKV 90 (317)
Q Consensus 13 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~ 90 (317)
+|++.++..+...+......+++++||||+|||++++.+++.+... ...++.+++............... ......
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 3678888888888877555579999999999999999999987432 233455544332222211111110 000000
Q ss_pred cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc------cCCceEEEEecCCC--cCchhHhhhc-ceeeec
Q psy879 91 TLPPGRHKIVILDEADSMTDGAQQALRRTMEIY------SNTTRFALACNNSE--KIIEPIQSRC-AMLRYN 153 (317)
Q Consensus 91 ~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~------~~~~~~il~~~~~~--~l~~~i~sR~-~~i~f~ 153 (317)
........++++||++.+.......++..++.. +..+.+|++++... .+.+.+.+|+ ..+.++
T Consensus 79 ~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 011246789999999999887888888888865 35678888888876 7889999999 556655
No 176
>KOG0652|consensus
Probab=99.54 E-value=2.6e-13 Score=110.58 Aligned_cols=170 Identities=19% Similarity=0.304 Sum_probs=113.7
Q ss_pred CCC-CCCcccCCHHHHHHHHHHHh-----------cC-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC
Q psy879 5 RPQ-TFSDIVGNEDTVERLKVFSS-----------SG-NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70 (317)
Q Consensus 5 ~P~-~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 70 (317)
+|. +++|+-|-+..++.|..++- -| ++|. +|+|||||||||.+|+++|..-.. .++-+.+.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-----TFLKLAgP 239 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-----TFLKLAGP 239 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-----hHHHhcch
Confidence 453 47888888877777665541 12 2333 999999999999999999986421 12211111
Q ss_pred ------CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHHHHHHHHhhh-----ccCCce
Q psy879 71 ------NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQQALRRTMEI-----YSNTTR 128 (317)
Q Consensus 71 ------~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~~~ll~~le~-----~~~~~~ 128 (317)
-..+..-+|+.+..... ..+.+++|||+|.+. .+.|...+.++.. +...+.
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAKE-------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAKE-------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhhc-------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 01233445554443322 468899999999873 2356666666653 234577
Q ss_pred EEEEecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy879 129 FALACNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTA 187 (317)
Q Consensus 129 ~il~~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 187 (317)
+|.+||+.+-++|++.+.... |+|+.|+++...++++-..++-++. ++-..+.+++.+
T Consensus 313 viAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsT 373 (424)
T KOG0652|consen 313 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARST 373 (424)
T ss_pred EEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcc
Confidence 899999999999999877765 9999999999999988877765542 222356666554
No 177
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.53 E-value=2.2e-13 Score=121.60 Aligned_cols=184 Identities=24% Similarity=0.281 Sum_probs=114.8
Q ss_pred cccCCHHHHHHHHHHHh-------c---CC--------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC-
Q psy879 11 DIVGNEDTVERLKVFSS-------S---GN--------VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN- 71 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~-------~---~~--------~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~- 71 (317)
.++||+++++.+..++. . .. ..+++|+||||+|||++|+++++.+. .++...++..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-----~pf~~~da~~L 152 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-----VPFAIADATTL 152 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----CCeEEechhhc
Confidence 35899999998876651 1 11 13699999999999999999998863 2233333221
Q ss_pred ----CcChHHHHHHHHHHHhh-cccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhhc---------
Q psy879 72 ----DRGIDTVRNKIKMFAQQ-KVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEIY--------- 123 (317)
Q Consensus 72 ----~~~~~~i~~~~~~~~~~-~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~~--------- 123 (317)
..+. +..+.+...... +.......+.+|+|||+|++.+ +.|++|+++||..
T Consensus 153 ~~~gyvG~-d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~g 231 (413)
T TIGR00382 153 TEAGYVGE-DVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGG 231 (413)
T ss_pred cccccccc-cHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCC
Confidence 1111 122222222111 1111124567999999999986 5799999999721
Q ss_pred ----cCCceEEEEecCC---------------------------C-----------------------cCchhHhhhcce
Q psy879 124 ----SNTTRFALACNNS---------------------------E-----------------------KIIEPIQSRCAM 149 (317)
Q Consensus 124 ----~~~~~~il~~~~~---------------------------~-----------------------~l~~~i~sR~~~ 149 (317)
..++++|.|+|-. . .+.|.+..|+..
T Consensus 232 r~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~ 311 (413)
T TIGR00382 232 RKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPV 311 (413)
T ss_pred ccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCe
Confidence 1234455555430 0 145778888865
Q ss_pred -eeecCCCHHHHHHHHHHH----HH-------HcC--CCCCHHHHHHHHHhcC---CCHHHHHHHHHH
Q psy879 150 -LRYNKLTDAQLLSKVIEI----CE-------KEN--ISHTNDGLEAIVFTAQ---GDMRQALNNLQS 200 (317)
Q Consensus 150 -i~f~~~~~~~~~~~l~~~----~~-------~~~--~~i~~~~~~~l~~~~~---gd~r~~i~~l~~ 200 (317)
+.|.|++.+++.+++... ++ .++ +.+++++++.+++.+. -..|.+-..++.
T Consensus 312 Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~ 379 (413)
T TIGR00382 312 IATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEG 379 (413)
T ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHH
Confidence 889999999999998752 22 123 3568999999998742 224444444443
No 178
>KOG0737|consensus
Probab=99.53 E-value=8.7e-14 Score=118.75 Aligned_cols=184 Identities=20% Similarity=0.225 Sum_probs=119.3
Q ss_pred CCCcccCCHHHHHHHHHHHh----------cCC----CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--
Q psy879 8 TFSDIVGNEDTVERLKVFSS----------SGN----VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~----------~~~----~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-- 71 (317)
+|+|+-|-+.+++.++..+. .|+ +..+|+|||||||||.+|+++|++..+ .++.+..+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-----~fInv~~s~lt 164 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-----NFINVSVSNLT 164 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-----Ccceeeccccc
Confidence 58999999999999887652 222 224999999999999999999998532 233333322
Q ss_pred CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHH-----------HHHHHHH---hh-hccCCceEEEEecCC
Q psy879 72 DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA-----------QQALRRT---ME-IYSNTTRFALACNNS 136 (317)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~-----------~~~ll~~---le-~~~~~~~~il~~~~~ 136 (317)
+....+-.......+..+. .=.+.+++|||+|.+.... .+.|.-. +. .....+.+..+||+|
T Consensus 165 ~KWfgE~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred hhhHHHHHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 1112222222222222221 1357899999999886321 1111111 11 222335556679999
Q ss_pred CcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Q psy879 137 EKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGD-MRQALNNLQS 200 (317)
Q Consensus 137 ~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd-~r~~i~~l~~ 200 (317)
..++.++.+|+.. ++.+-|+..+..++|+-+++.+.++ ++-.+..++..+.|- -+.+.+.+..
T Consensus 242 ~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 242 FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999766 9999999999999999999988765 344467788877663 3333344433
No 179
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.53 E-value=3.7e-13 Score=130.71 Aligned_cols=171 Identities=17% Similarity=0.224 Sum_probs=118.5
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-N-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~- 72 (317)
-+|+++.|.+.+++.+..++.. | . +.+++||||||||||++++++++.+. ..++.+++...
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~i~ 249 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPEIM 249 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHHHh
Confidence 4699999999999988877632 1 1 22499999999999999999999862 23555554321
Q ss_pred ---c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhcc--CCceEEEEec
Q psy879 73 ---R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIYS--NTTRFALACN 134 (317)
Q Consensus 73 ---~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~~--~~~~~il~~~ 134 (317)
. ....++..+..... ..+.+++|||+|.+.. ..++.|+..++... ..+.+|.+||
T Consensus 250 ~~~~g~~~~~l~~lf~~a~~-------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn 322 (733)
T TIGR01243 250 SKYYGESEERLREIFKEAEE-------NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN 322 (733)
T ss_pred cccccHHHHHHHHHHHHHHh-------cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC
Confidence 1 11223333333221 3467999999998743 34677888887543 3455666899
Q ss_pred CCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCH
Q psy879 135 NSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHT-NDGLEAIVFTAQGDM 191 (317)
Q Consensus 135 ~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~~~gd~ 191 (317)
.++.+++++++ |+.. +.|+.|+.++...++..... ++.+. +..++.+++.+.|-.
T Consensus 323 ~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 323 RPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred ChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCC
Confidence 99999999987 6654 99999999999999986554 33342 334677888777643
No 180
>KOG0736|consensus
Probab=99.52 E-value=2.4e-13 Score=125.42 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=110.5
Q ss_pred CCCcccCCHHHHHHHHHHHhc----------CCC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----
Q psy879 8 TFSDIVGNEDTVERLKVFSSS----------GNV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN---- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~----------~~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~---- 71 (317)
+|+|+=|-++++..+...++- |-. ..+|||||||||||.+|+++|.++ +..++.+.+..
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-----sL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELLNM 744 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-----eeeEEeecCHHHHHH
Confidence 699999999999988776642 221 249999999999999999999985 34455554432
Q ss_pred --CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-------------HHHHHHHHhhhcc----CCceEEEE
Q psy879 72 --DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-------------AQQALRRTMEIYS----NTTRFALA 132 (317)
Q Consensus 72 --~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-------------~~~~ll~~le~~~----~~~~~il~ 132 (317)
..+...+|+++..... +.+.||++||+|.+.+. ....|+-=|+..+ ..+.+|.+
T Consensus 745 YVGqSE~NVR~VFerAR~-------A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARS-------AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred HhcchHHHHHHHHHHhhc-------cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 1233456666665432 57899999999999653 3445555555333 34557778
Q ss_pred ecCCCcCchhHhhh--cce-eeecCCCHHHHHH-HHHHHHHHcCCCCCHHH-HHHHHHhc
Q psy879 133 CNNSEKIIEPIQSR--CAM-LRYNKLTDAQLLS-KVIEICEKENISHTNDG-LEAIVFTA 187 (317)
Q Consensus 133 ~~~~~~l~~~i~sR--~~~-i~f~~~~~~~~~~-~l~~~~~~~~~~i~~~~-~~~l~~~~ 187 (317)
||+|+-++|++.+- |.. ++..+.+.++-+. +|+..-+ .+.+++++ +..+++.+
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr--kFkLdedVdL~eiAk~c 875 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR--KFKLDEDVDLVEIAKKC 875 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH--HccCCCCcCHHHHHhhC
Confidence 99999999999764 444 7777776655544 4444333 33444433 45556554
No 181
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.52 E-value=8.6e-13 Score=125.54 Aligned_cols=208 Identities=17% Similarity=0.151 Sum_probs=132.5
Q ss_pred CCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-----------CCCC-----------------
Q psy879 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-----------GPSF----------------- 60 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~-----------~~~~----------------- 60 (317)
|.+++||++++..+...+-.+...+++|+|++|+|||++++++++.+- |...
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 689999999999988887777777899999999999999999999871 1100
Q ss_pred --CCceEEecCCCC----cChHHHHHHHH--HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc---------
Q psy879 61 --KDAVLELNASND----RGIDTVRNKIK--MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY--------- 123 (317)
Q Consensus 61 --~~~~~~~~~~~~----~~~~~i~~~~~--~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~--------- 123 (317)
..+++.+..... .+..++...+. .....+..+..+...+++|||++.+.+..++.|+..|++.
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~ 162 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGL 162 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCc
Confidence 123333322210 11111221111 0011121222346789999999999999999999999853
Q ss_pred ----cCCceEEEEecCC-CcCchhHhhhcce-eeecCCCH-HHHHHHHHHHH----------------------------
Q psy879 124 ----SNTTRFALACNNS-EKIIEPIQSRCAM-LRYNKLTD-AQLLSKVIEIC---------------------------- 168 (317)
Q Consensus 124 ----~~~~~~il~~~~~-~~l~~~i~sR~~~-i~f~~~~~-~~~~~~l~~~~---------------------------- 168 (317)
+..+.+|.++|.. ..+.+++.+|+.. +...++.. ++..+++....
T Consensus 163 ~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar 242 (633)
T TIGR02442 163 SVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARAR 242 (633)
T ss_pred eeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHH
Confidence 2345566666654 3678999999976 66665542 33333332210
Q ss_pred -HHcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHh---h--hCCCcccHHHHHhh
Q psy879 169 -EKENISHTNDGLEAIVFTA---QG-DMRQALNNLQST---H--NGFGHVTAEYVFKV 216 (317)
Q Consensus 169 -~~~~~~i~~~~~~~l~~~~---~g-d~r~~i~~l~~~---~--~~~~~i~~~~v~~~ 216 (317)
....+.++++.+++++..+ +- ++|..+..++.+ + .+...++.+|+..+
T Consensus 243 ~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A 300 (633)
T TIGR02442 243 SLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREA 300 (633)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 0124677888888777654 22 467777666543 2 26778999999664
No 182
>KOG0726|consensus
Probab=99.51 E-value=1.3e-13 Score=113.92 Aligned_cols=153 Identities=21% Similarity=0.307 Sum_probs=110.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEec
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS-----------G-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~ 68 (317)
||-.-.++.|+-|-+..++.++..++- | .+| .+++||+||||||.+|+++|+.- +..|+.+-
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-----SATFlRvv 251 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-----SATFLRVV 251 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-----chhhhhhh
Confidence 444446799999999988888888652 2 233 39999999999999999999863 22233333
Q ss_pred CCC------CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhc-----cCC
Q psy879 69 ASN------DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIY-----SNT 126 (317)
Q Consensus 69 ~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~-----~~~ 126 (317)
.+. ..+..-+|+.+...... .+.++||||+|.... +.|..++.+++.. .+.
T Consensus 252 GseLiQkylGdGpklvRqlF~vA~e~-------apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD 324 (440)
T KOG0726|consen 252 GSELIQKYLGDGPKLVRELFRVAEEH-------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 324 (440)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHhc-------CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC
Confidence 221 24555666666554433 578999999998742 3466777776633 457
Q ss_pred ceEEEEecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHH
Q psy879 127 TRFALACNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 127 ~~~il~~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~ 166 (317)
+.+|++||..+.++|++.+-..+ |.|+.|++..-.++..-
T Consensus 325 vKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 325 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred eEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 88999999999999999876665 99999998877766543
No 183
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=2.3e-12 Score=110.85 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=113.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH--
Q psy879 4 YRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK-- 81 (317)
Q Consensus 4 y~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-- 81 (317)
|.|+.=.+++-.+...+.+...+..++ +++|.||||||||++++.+|+.+. .+++.++........++-..
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l~-----~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARLN-----WPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHHC-----CCeEEEEecCCCChhhcCCCce
Confidence 445544556667777777777776665 799999999999999999999973 23444443322222111100
Q ss_pred --------HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh--------------ccCCceEEEEecCCC--
Q psy879 82 --------IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI--------------YSNTTRFALACNNSE-- 137 (317)
Q Consensus 82 --------~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~--------------~~~~~~~il~~~~~~-- 137 (317)
...|...++......+.++++||+|...++.+++|..+||. +++..++|.|+|...
T Consensus 112 ~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G 191 (327)
T TIGR01650 112 IVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG 191 (327)
T ss_pred eeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC
Confidence 00111111111113456799999999999999999999882 234566788888642
Q ss_pred ----------cCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy879 138 ----------KIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT 186 (317)
Q Consensus 138 ----------~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~ 186 (317)
.+.++..+|+.+ +.+..|+.++-.+++...+....-..++..++++++.
T Consensus 192 d~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 192 DTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred CCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 468999999986 6899999999999887764211100124455555543
No 184
>KOG0740|consensus
Probab=99.50 E-value=3.8e-13 Score=118.74 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=125.1
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHh---------cC---CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSS---------SG---NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~---------~~---~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 70 (317)
.-++-.|+++-|.+.+++.+..++- .| ....+|++||||+|||.+++++|.+. ...++.+.++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSas 220 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISAS 220 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-----cceEeeccHH
Confidence 3456779999999998888776642 11 12249999999999999999999985 3346666654
Q ss_pred CCc------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------H-HHHHHHHhh---hccCCceE
Q psy879 71 NDR------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------A-QQALRRTME---IYSNTTRF 129 (317)
Q Consensus 71 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~-~~~ll~~le---~~~~~~~~ 129 (317)
+.. +..-++.++..... ..+.|++|||+|.+..+ . ...|++..- .+.+++.+
T Consensus 221 sLtsK~~Ge~eK~vralf~vAr~-------~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 221 SLTSKYVGESEKLVRALFKVARS-------LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred HhhhhccChHHHHHHHHHHHHHh-------cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 321 12233333333221 36889999999987532 1 222333322 34457778
Q ss_pred EEEecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q psy879 130 ALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG 189 (317)
Q Consensus 130 il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 189 (317)
|.+||.+..++.+++.|++. +.++.|+.+....++.+.++..+..+.+..++.+++.+.|
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 88999999999999999987 7788889999999999988888777888888899887643
No 185
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.49 E-value=2e-12 Score=120.51 Aligned_cols=205 Identities=19% Similarity=0.173 Sum_probs=137.4
Q ss_pred CCCCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH-HH
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN-KI 82 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~~ 82 (317)
..+|++++|.....+.+...++. ....+++|+|++||||+++|+++...- .....+++.++|.... .+.+.. .+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~-~~~~e~elF 276 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIP-DDVVESELF 276 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCC-HHHHHHHhc
Confidence 34699999987765555444431 122359999999999999999987652 3334568888886532 222221 11
Q ss_pred HHHH-------h-hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCCC------
Q psy879 83 KMFA-------Q-QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNSE------ 137 (317)
Q Consensus 83 ~~~~-------~-~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~~------ 137 (317)
+... . ....+..+....++|||++.|....|..|++++++. +.++++|++|+..-
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~ 356 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 356 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHc
Confidence 1110 0 000011245688999999999999999999999853 13457888776642
Q ss_pred -cCchhHhhhcce--eeecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh-
Q psy879 138 -KIIEPIQSRCAM--LRYNKLTD--AQLLSK----VIEICEKENI---SHTNDGLEAIVFT-AQGDMRQALNNLQSTHN- 203 (317)
Q Consensus 138 -~l~~~i~sR~~~--i~f~~~~~--~~~~~~----l~~~~~~~~~---~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~- 203 (317)
.+.+.+..|+.. +.+||+.+ +++..+ +...+.+.|. .+++++++.+... ..||+|+..+.++.++.
T Consensus 357 g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 357 GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 466778888655 77788765 344433 4444444443 6899999998877 89999999999987765
Q ss_pred -CCCcccHHHH
Q psy879 204 -GFGHVTAEYV 213 (317)
Q Consensus 204 -~~~~i~~~~v 213 (317)
....|+.+++
T Consensus 437 ~~~~~i~~~~~ 447 (520)
T PRK10820 437 LEGYELRPQDI 447 (520)
T ss_pred CCCCcccHHHc
Confidence 4557877775
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.49 E-value=1.9e-12 Score=113.63 Aligned_cols=198 Identities=14% Similarity=0.169 Sum_probs=129.7
Q ss_pred ccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH-HHHH---
Q psy879 12 IVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK-IKMF--- 85 (317)
Q Consensus 12 ~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--- 85 (317)
++|+....+.+...++. ....+++|+|++||||+++|+++...- .....+++.++|... ....+... ++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s--~r~~~pfv~vnc~~~-~~~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS--KRWQGPLVKLNCAAL-SENLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc--CccCCCeEEEeCCCC-ChHHHHHHHhcccccc
Confidence 35665554444433321 122269999999999999999998752 334457888888642 22222221 1110
Q ss_pred -H----hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------CcCchh
Q psy879 86 -A----QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EKIIEP 142 (317)
Q Consensus 86 -~----~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~l~~~ 142 (317)
. .....+......+++|||++.|..+.|..|++++++.. .++++|++|+.. ..+.+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 0 00011223467899999999999999999999998532 456788888754 256688
Q ss_pred Hhhhcce--eeecCCCH--HHHHHHHHHH----HHHcC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHhhhC--CCc
Q psy879 143 IQSRCAM--LRYNKLTD--AQLLSKVIEI----CEKEN----ISHTNDGLEAIVFTA-QGDMRQALNNLQSTHNG--FGH 207 (317)
Q Consensus 143 i~sR~~~--i~f~~~~~--~~~~~~l~~~----~~~~~----~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~~--~~~ 207 (317)
+..|+.. |.+||+.+ +++..++... +.+.+ ..+++++++.+.... .||+|+..+.++.++.. ...
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~~ 237 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCc
Confidence 8888854 88888873 5665554443 33333 358999999988774 99999999999876652 234
Q ss_pred ccHHH
Q psy879 208 VTAEY 212 (317)
Q Consensus 208 i~~~~ 212 (317)
++.++
T Consensus 238 ~~~~~ 242 (329)
T TIGR02974 238 APIDE 242 (329)
T ss_pred cchhh
Confidence 55444
No 187
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.1e-13 Score=122.27 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=132.3
Q ss_pred CCCcccCCHHHHHHHHHHH---h--------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----
Q psy879 8 TFSDIVGNEDTVERLKVFS---S--------SGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN---- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l---~--------~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~---- 71 (317)
+|.|+.|.+++++.+...+ + .++.|. ++++||||||||.+|+++|.+. +.+++.++.++
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-----~VPFf~iSGS~FVem 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFVEM 222 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----CCCceeccchhhhhh
Confidence 5999999999988876654 3 234555 9999999999999999999884 45566666554
Q ss_pred --CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhhccC--CceEEEEe
Q psy879 72 --DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEIYSN--TTRFALAC 133 (317)
Q Consensus 72 --~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~~~~--~~~~il~~ 133 (317)
..+...+|+.+...... .+.+++|||+|...+. ..|.|+--|+.... .++++.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~-------aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaT 295 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKN-------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAAT 295 (596)
T ss_pred hcCCCcHHHHHHHHHhhcc-------CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecC
Confidence 24556677766654433 4689999999987532 35666666665553 44566678
Q ss_pred cCCCcCchhHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHh----cCCCHHHHHHHHHHhhh--
Q psy879 134 NNSEKIIEPIQSRCA---MLRYNKLTDAQLLSKVIEICEKENISHTND-GLEAIVFT----AQGDMRQALNNLQSTHN-- 203 (317)
Q Consensus 134 ~~~~~l~~~i~sR~~---~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~----~~gd~r~~i~~l~~~~~-- 203 (317)
|+++-+++++.+=.+ .+..+.|+-....++++-.++.. .+++. .+..+++. ++.|+...+|+..-.+.
T Consensus 296 NRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~ 373 (596)
T COG0465 296 NRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR 373 (596)
T ss_pred CCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh
Confidence 999999999965433 38888898888889988655543 33322 13345555 45577777766544333
Q ss_pred CCCcccHHHHHhh
Q psy879 204 GFGHVTAEYVFKV 216 (317)
Q Consensus 204 ~~~~i~~~~v~~~ 216 (317)
....|+..++.++
T Consensus 374 n~~~i~~~~i~ea 386 (596)
T COG0465 374 NKKEITMRDIEEA 386 (596)
T ss_pred cCeeEeccchHHH
Confidence 4556666665543
No 188
>KOG2680|consensus
Probab=99.48 E-value=5.6e-12 Score=104.74 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=97.6
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC------------CCcCchhHhhhcceeeecCCCHHHHHHHH
Q psy879 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN------------SEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~------------~~~l~~~i~sR~~~i~f~~~~~~~~~~~l 164 (317)
+.|+||||++.|.-+....|.+.+|+--. .+++++||. ++.++-.+..|..++.-.|++++++.++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~-PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMA-PIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccC-cEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 68999999999999999999999996322 345666664 34688999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh-----CCCcccHHHHHhh
Q psy879 165 IEICEKENISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN-----GFGHVTAEYVFKV 216 (317)
Q Consensus 165 ~~~~~~~~~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~-----~~~~i~~~~v~~~ 216 (317)
.-+|..+++.+++++++.+... ...++|.+++++-.+.. ....+..++|..+
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~ 425 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERV 425 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHH
Confidence 9999999999999999998866 45689999999865433 3456666766543
No 189
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.45 E-value=6.1e-12 Score=112.30 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=101.1
Q ss_pred CCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC--CCceEEecCC------------CCcC
Q psy879 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF--KDAVLELNAS------------NDRG 74 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~------------~~~~ 74 (317)
++++++.++..+.+...+..++ +++|+||||||||++|+.++..+.+... ....+.+... ...+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 6778888999999888888776 8999999999999999999998754321 1112222211 0001
Q ss_pred hH----HHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHH-HHHHHHHhhh----------------------ccCCc
Q psy879 75 ID----TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA-QQALRRTMEI----------------------YSNTT 127 (317)
Q Consensus 75 ~~----~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~-~~~ll~~le~----------------------~~~~~ 127 (317)
.. .+.+.+..+...+ ..+.++||||++....+. ...++.+||. .|.+.
T Consensus 252 y~~~~G~f~~~~~~A~~~p-----~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl 326 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQP-----EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENV 326 (459)
T ss_pred eEecCchHHHHHHHHHhcc-----cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCe
Confidence 00 1111122222221 457899999999998553 5566666651 24667
Q ss_pred eEEEEecCCC----cCchhHhhhcceeeecC-CCHHHHHHHHHH
Q psy879 128 RFALACNNSE----KIIEPIQSRCAMLRYNK-LTDAQLLSKVIE 166 (317)
Q Consensus 128 ~~il~~~~~~----~l~~~i~sR~~~i~f~~-~~~~~~~~~l~~ 166 (317)
.+|.|+|..+ .++.++++|+..+++.| ++...+.+++..
T Consensus 327 ~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~~ 370 (459)
T PRK11331 327 YIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLLN 370 (459)
T ss_pred EEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHHh
Confidence 7888888776 58899999999999887 455667776654
No 190
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.45 E-value=1.9e-12 Score=108.63 Aligned_cols=175 Identities=18% Similarity=0.332 Sum_probs=106.8
Q ss_pred ccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH-----------
Q psy879 12 IVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN----------- 80 (317)
Q Consensus 12 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~----------- 80 (317)
++|+++.++.|..++.++...+++++||.|+|||++++.+.+.+..... ..+.+..........+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 5799999999999999886668999999999999999999998733221 122222211111111111
Q ss_pred ------------------------------HHHHHHhhcccCCCCceeEEEEeCCCCCC------HHHHHHHHHHhhh--
Q psy879 81 ------------------------------KIKMFAQQKVTLPPGRHKIVILDEADSMT------DGAQQALRRTMEI-- 122 (317)
Q Consensus 81 ------------------------------~~~~~~~~~~~~~~~~~~vliiDE~d~l~------~~~~~~ll~~le~-- 122 (317)
.+..+... +.+.+|+|||++.+. ......|..+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK------GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC------HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc------CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11111100 234899999999998 3456667777765
Q ss_pred ccCCceEEEEecCCC------cCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHH
Q psy879 123 YSNTTRFALACNNSE------KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISH--TNDGLEAIVFTAQGDMRQA 194 (317)
Q Consensus 123 ~~~~~~~il~~~~~~------~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i--~~~~~~~l~~~~~gd~r~~ 194 (317)
...+..+|+++.... .-..++..|+..+.+++++.++..+++...+... ..+ +++.++.+...++|.++..
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 234555666655421 2345577888889999999999999999987765 544 8999999999999999865
Q ss_pred H
Q psy879 195 L 195 (317)
Q Consensus 195 i 195 (317)
.
T Consensus 232 ~ 232 (234)
T PF01637_consen 232 Q 232 (234)
T ss_dssp H
T ss_pred h
Confidence 4
No 191
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.44 E-value=7.1e-12 Score=116.01 Aligned_cols=206 Identities=14% Similarity=0.198 Sum_probs=137.4
Q ss_pred CCCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH-HH
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK-IK 83 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~~ 83 (317)
-+|++++|+....+.+...++. ....+++|+|++||||+++|+++... ......+++.+||.... ...+... ++
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~--S~r~~~pfv~inC~~l~-e~lleseLFG 285 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL--SGRRDFPFVAINCGAIA-ESLLEAELFG 285 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh--cCcCCCCEEEeccccCC-hhHHHHHhcC
Confidence 3588999998877776666542 22336999999999999999999875 23345678888886532 2222221 11
Q ss_pred H----HH-----hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCCC------
Q psy879 84 M----FA-----QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNSE------ 137 (317)
Q Consensus 84 ~----~~-----~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~~------ 137 (317)
. |. .....+.......++|||++.|....|..|++++++.. .++++|++|+..-
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~ 365 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQ 365 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhh
Confidence 0 00 00001112457899999999999999999999998532 2447888887652
Q ss_pred -cCchhHhhhcce--eeecCCCH--HHHHHHHHH----HHHHcCCCCCHHHHHH-------HHHh-cCCCHHHHHHHHHH
Q psy879 138 -KIIEPIQSRCAM--LRYNKLTD--AQLLSKVIE----ICEKENISHTNDGLEA-------IVFT-AQGDMRQALNNLQS 200 (317)
Q Consensus 138 -~l~~~i~sR~~~--i~f~~~~~--~~~~~~l~~----~~~~~~~~i~~~~~~~-------l~~~-~~gd~r~~i~~l~~ 200 (317)
.+.+.+-.|+.. +.+||+.+ +++..+... .+...++.++++++.. +... ..||+|+..+.++.
T Consensus 366 g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier 445 (526)
T TIGR02329 366 GRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVER 445 (526)
T ss_pred cchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 345566666654 77888865 455544433 3334466788888776 5544 68999999999998
Q ss_pred hhh-----CCCcccHHHHHh
Q psy879 201 THN-----GFGHVTAEYVFK 215 (317)
Q Consensus 201 ~~~-----~~~~i~~~~v~~ 215 (317)
++. ....|+.+++..
T Consensus 446 ~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 446 LALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHhcccCCCCccCHHHhhh
Confidence 664 235678777643
No 192
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.44 E-value=1e-11 Score=109.06 Aligned_cols=193 Identities=16% Similarity=0.200 Sum_probs=129.9
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH-HH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI-KM 84 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 84 (317)
.+++++|.....+.+...++. ....+++|+|++||||+++|+++... ......+++.++|... ....+...+ +.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~-~~~~~~~~lfg~ 80 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAAL-NENLLDSELFGH 80 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCC-CHHHHHHHHccc
Confidence 578899987766665554432 12226999999999999999999864 3333457888888653 222222211 11
Q ss_pred HH--------hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------Cc
Q psy879 85 FA--------QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EK 138 (317)
Q Consensus 85 ~~--------~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~ 138 (317)
.. .....+......+++|||++.|....|..|++++++.. .++++|++++.. ..
T Consensus 81 ~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~ 160 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160 (326)
T ss_pred cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCC
Confidence 00 00111123567899999999999999999999998532 246788887754 35
Q ss_pred CchhHhhhcce--eeecCCCH--HHHHHHHHH----HHHHcC----CCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh
Q psy879 139 IIEPIQSRCAM--LRYNKLTD--AQLLSKVIE----ICEKEN----ISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 139 l~~~i~sR~~~--i~f~~~~~--~~~~~~l~~----~~~~~~----~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~ 203 (317)
+.+.+..|+.. |.+||+.+ +++..++.. .+.+.+ ..++++++..+... ..||+|+..+.++.++.
T Consensus 161 f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred chHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 66888888854 77888865 345444433 344433 25789999888766 68999999999998665
No 193
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.44 E-value=7.3e-12 Score=118.13 Aligned_cols=124 Identities=23% Similarity=0.184 Sum_probs=86.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHHHhhhc---------------------cCCceEEEEecCC--CcCchhHhhhcc---e
Q psy879 96 RHKIVILDEADSMTDGAQQALRRTMEIY---------------------SNTTRFALACNNS--EKIIEPIQSRCA---M 149 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~~~ll~~le~~---------------------~~~~~~il~~~~~--~~l~~~i~sR~~---~ 149 (317)
...+++|||++.|.+..|..|++.|++. |.++++|+++|.. ..+.+++++|+. +
T Consensus 217 ngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v 296 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGY 296 (608)
T ss_pred CCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeE
Confidence 4689999999999999999999999742 1245678888764 578999999998 4
Q ss_pred -eeecC---CCHHH---HHHHHHHHHHHcC--CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHhh-----hCC
Q psy879 150 -LRYNK---LTDAQ---LLSKVIEICEKEN--ISHTNDGLEAIVFTA----------QGDMRQALNNLQSTH-----NGF 205 (317)
Q Consensus 150 -i~f~~---~~~~~---~~~~l~~~~~~~~--~~i~~~~~~~l~~~~----------~gd~r~~i~~l~~~~-----~~~ 205 (317)
+.|+. .+.+. +..++.+.+++.| -.+++++++.+.+.+ ..+.|+.-++++.+. .+.
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~ 376 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGK 376 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 45543 23433 3455666666653 357899988887432 235788877776642 144
Q ss_pred CcccHHHHHhhcCC
Q psy879 206 GHVTAEYVFKVCDE 219 (317)
Q Consensus 206 ~~i~~~~v~~~~~~ 219 (317)
..|+.+||.+++..
T Consensus 377 ~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 377 VYVTAEHVLKAKKL 390 (608)
T ss_pred ceecHHHHHHHHHH
Confidence 57899998876543
No 194
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.44 E-value=2.2e-13 Score=109.30 Aligned_cols=125 Identities=26% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---C------------
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN---D------------ 72 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~---~------------ 72 (317)
.|.+++||+.+++.+.-+..++. |++++||||+|||++|+.+...|-. -......+..... .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~h--~lLl~GppGtGKTmlA~~l~~lLP~-l~~~e~le~~~i~s~~~~~~~~~~~~~~P 77 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGGH--HLLLIGPPGTGKTMLARRLPSLLPP-LTEEEALEVSKIYSVAGLGPDEGLIRQRP 77 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS---CCEECCESS--S-TT---S---EEEE---
T ss_pred ChhhhcCcHHHHHHHHHHHcCCC--CeEEECCCCCCHHHHHHHHHHhCCC-CchHHHhhhccccccccCCCCCceecCCC
Confidence 48899999999999999888765 7999999999999999999986521 1111111111000 0
Q ss_pred -cC---hHHHHHHHHHHH-hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-------------ccCCceEEEEec
Q psy879 73 -RG---IDTVRNKIKMFA-QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI-------------YSNTTRFALACN 134 (317)
Q Consensus 73 -~~---~~~i~~~~~~~~-~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~-------------~~~~~~~il~~~ 134 (317)
+. .......++... ..+.....+.+.|+++||+..+.+...++|+..||+ +|.+..+|.++|
T Consensus 78 fr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 78 FRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-
T ss_pred cccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEec
Confidence 00 001111222111 122223335789999999999999999999999984 355667788777
Q ss_pred C
Q psy879 135 N 135 (317)
Q Consensus 135 ~ 135 (317)
.
T Consensus 158 P 158 (206)
T PF01078_consen 158 P 158 (206)
T ss_dssp S
T ss_pred c
Confidence 5
No 195
>KOG0729|consensus
Probab=99.44 E-value=1.5e-12 Score=106.44 Aligned_cols=167 Identities=19% Similarity=0.297 Sum_probs=113.0
Q ss_pred CCCcccCCHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---
Q psy879 8 TFSDIVGNEDTVERLKVFSSS-----------G-NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--- 71 (317)
++.|+-|-.+.++.++..++. | .+|. +++|||||+|||.+|+++|+.- ...++.+-.+.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigselvq 249 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSELVQ 249 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhHHHHH
Confidence 577888878888887776542 2 2333 9999999999999999999863 23344443332
Q ss_pred ---CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHHHHHHHHhh-----hccCCceEEEE
Q psy879 72 ---DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQQALRRTME-----IYSNTTRFALA 132 (317)
Q Consensus 72 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~~~ll~~le-----~~~~~~~~il~ 132 (317)
..+..-+++.+..... .+..++++||+|.+. .+.|...+.++. .|.+++.+.++
T Consensus 250 kyvgegarmvrelf~mart-------kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlma 322 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMART-------KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 322 (435)
T ss_pred HHhhhhHHHHHHHHHHhcc-------cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEee
Confidence 1222334444443321 356799999999773 235777777766 45678999999
Q ss_pred ecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcC
Q psy879 133 CNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDG-LEAIVFTAQ 188 (317)
Q Consensus 133 ~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~ 188 (317)
||.++.++|++.+-... ++|..|+-+-...+++-.++. +.++.+. .+.++..|.
T Consensus 323 tnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcp 380 (435)
T KOG0729|consen 323 TNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCP 380 (435)
T ss_pred cCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCC
Confidence 99999999999876655 999999887777666655543 3344443 455565553
No 196
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.43 E-value=3.9e-11 Score=107.70 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=141.9
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF 85 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 85 (317)
...+++|+....+.+...+.+ ....+++|+|++||||..+|+++.+. ....+.+|+.+||.. ...+-+...+..-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~--S~R~~~PFVavNcaA-ip~~l~ESELFGh 215 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQA--SPRAKGPFIAVNCAA-IPENLLESELFGH 215 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhh--CcccCCCceeeeccc-CCHHHHHHHhhcc
Confidence 578999998888877776653 22235999999999999999999986 455567899999864 3333333222111
Q ss_pred Hhhcc---------cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC-------Cc
Q psy879 86 AQQKV---------TLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS-------EK 138 (317)
Q Consensus 86 ~~~~~---------~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~-------~~ 138 (317)
...++ .+-.+....+++||+..|.-+.|..|++.+++. +-++++|.+||.. .+
T Consensus 216 ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~ 295 (464)
T COG2204 216 EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGR 295 (464)
T ss_pred cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCC
Confidence 11111 112256889999999999999999999999843 2356789988875 25
Q ss_pred CchhHhhhcce--eeecCCCH--HHHH----HHHHHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh--C
Q psy879 139 IIEPIQSRCAM--LRYNKLTD--AQLL----SKVIEICEKEN---ISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN--G 204 (317)
Q Consensus 139 l~~~i~sR~~~--i~f~~~~~--~~~~----~~l~~~~~~~~---~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~--~ 204 (317)
+-+.+--|..+ ++.||+-+ +++- .++.+.++..| ..+++++++.+..+ ..||+|+..|.++.++. .
T Consensus 296 FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 296 FREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred cHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC
Confidence 77888888888 55555543 3333 23444444443 46789998887765 79999999999998665 4
Q ss_pred CCcccHHHHH
Q psy879 205 FGHVTAEYVF 214 (317)
Q Consensus 205 ~~~i~~~~v~ 214 (317)
...|+.+++.
T Consensus 376 ~~~i~~~~l~ 385 (464)
T COG2204 376 GPEIEVEDLP 385 (464)
T ss_pred ccccchhhcc
Confidence 4567766643
No 197
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.42 E-value=8.7e-12 Score=119.68 Aligned_cols=205 Identities=11% Similarity=0.112 Sum_probs=135.5
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH-HHHHH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR-NKIKM 84 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 84 (317)
+|++++|.....+.+...++. ....+++|+|++||||+++|+++.+.. .....+++.+||.... .+.+. +.++.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~-~~~~~~elfg~ 399 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYP-DEALAEEFLGS 399 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCC-hHHHHHHhcCC
Confidence 699999987766655444332 122259999999999999999999863 2234568888886432 22222 22221
Q ss_pred HHhh-----cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------CcCch
Q psy879 85 FAQQ-----KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EKIIE 141 (317)
Q Consensus 85 ~~~~-----~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~l~~ 141 (317)
.... ...+..+...+++|||++.|....|..|++++++.. -++++|++|+.. ..+.+
T Consensus 400 ~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~ 479 (638)
T PRK11388 400 DRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSR 479 (638)
T ss_pred CCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChH
Confidence 1000 001112457899999999999999999999998532 146688887764 24555
Q ss_pred hHhhhcce--eeecCCCHH--HHHHHHHHHHH----Hc--CCCCCHHHHHHHHHhc-CCCHHHHHHHHHHhhh--CCCcc
Q psy879 142 PIQSRCAM--LRYNKLTDA--QLLSKVIEICE----KE--NISHTNDGLEAIVFTA-QGDMRQALNNLQSTHN--GFGHV 208 (317)
Q Consensus 142 ~i~sR~~~--i~f~~~~~~--~~~~~l~~~~~----~~--~~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~--~~~~i 208 (317)
.+--|+.. |.+||+.+. ++...+...+. .. .+.+++++++.+.... .||+|++.+.++.++. ....|
T Consensus 480 dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~~i 559 (638)
T PRK11388 480 QLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRI 559 (638)
T ss_pred HHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCee
Confidence 66666655 677777653 45444444332 22 2468999999998875 8999999999998654 34467
Q ss_pred cHHHHHh
Q psy879 209 TAEYVFK 215 (317)
Q Consensus 209 ~~~~v~~ 215 (317)
+.+++..
T Consensus 560 ~~~~lp~ 566 (638)
T PRK11388 560 RLSDLPE 566 (638)
T ss_pred cHHHCch
Confidence 7776643
No 198
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.42 E-value=6.7e-12 Score=110.79 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=100.8
Q ss_pred cccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHh---
Q psy879 11 DIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ--- 87 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 87 (317)
.++|+++++..+..++..|. |++|.||||+|||++++.+|+.+. ..++.+.+.......++.........
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~-----~~~~~i~~t~~l~p~d~~G~~~~~~~~~~ 97 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALG-----LPFVRIQCTPDLLPSDLLGTYAYAALLLE 97 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhC-----CCeEEEecCCCCCHHHhcCchhHhhhhcc
Confidence 37889999888888888887 899999999999999999999973 44666666654444433222111111
Q ss_pred ---hccc---CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc------------cCCceEEEEecC-----CCcCchhHh
Q psy879 88 ---QKVT---LPPGRHKIVILDEADSMTDGAQQALRRTMEIY------------SNTTRFALACNN-----SEKIIEPIQ 144 (317)
Q Consensus 88 ---~~~~---~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~------------~~~~~~il~~~~-----~~~l~~~i~ 144 (317)
.... ...+...++++||+++..++.+++|+..|++. +....+|.++|+ ...+++++.
T Consensus 98 ~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~l 177 (329)
T COG0714 98 PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALL 177 (329)
T ss_pred CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHH
Confidence 0000 00111149999999999999999999999962 122334444462 346899999
Q ss_pred hhc-ceeeecCCCHHHHHHHHHH
Q psy879 145 SRC-AMLRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 145 sR~-~~i~f~~~~~~~~~~~l~~ 166 (317)
.|| ..+.+..|..++...++..
T Consensus 178 dRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 178 DRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred hhEEEEEecCCCCchHHHHHHHH
Confidence 999 5588887745444444433
No 199
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.41 E-value=4.4e-12 Score=111.91 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=78.8
Q ss_pred ceeEEEEeCCCCCCHH------------HHHHHHHHhhhc----------cCCceEEEEec----CCCcCchhHhhhcce
Q psy879 96 RHKIVILDEADSMTDG------------AQQALRRTMEIY----------SNTTRFALACN----NSEKIIEPIQSRCAM 149 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~------------~~~~ll~~le~~----------~~~~~~il~~~----~~~~l~~~i~sR~~~ 149 (317)
...+|+|||+|++... .|.+||+++|.. ..++.||++.. .+..+.|.+..|+.+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 5689999999998632 589999999942 13444555432 355789999999998
Q ss_pred -eeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHhhh
Q psy879 150 -LRYNKLTDAQLLSKVIE-----------ICEKENI--SHTNDGLEAIVFTA--------QGDMRQALNNLQSTHN 203 (317)
Q Consensus 150 -i~f~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~~~l~~~~--------~gd~r~~i~~l~~~~~ 203 (317)
+.+.+++.+++.++|.+ .++.+|+ .++++++..+++.+ +-..|.+...++....
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 99999999999999832 2344564 45889998888664 4457777777766543
No 200
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.41 E-value=1.5e-11 Score=113.88 Aligned_cols=205 Identities=15% Similarity=0.187 Sum_probs=133.1
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHc------CCCCCCceEEecCCCCcChHHHH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILL------GPSFKDAVLELNASNDRGIDTVR 79 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~------~~~~~~~~~~~~~~~~~~~~~i~ 79 (317)
+|++++|+....+.+...++. ....+++|+|++||||+++|+++...+. ....+.+++.+||.... ...+.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~-e~lle 295 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA-ESLLE 295 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC-hhhHH
Confidence 588999998877776666542 2233699999999999999999998621 12245678889887532 22222
Q ss_pred HH-HHH----HHh-----hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCCC-
Q psy879 80 NK-IKM----FAQ-----QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNSE- 137 (317)
Q Consensus 80 ~~-~~~----~~~-----~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~~- 137 (317)
.. ++. |.. .+..+..+....++|||++.|....|..|++++++. +.++++|++|+..-
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~ 375 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLE 375 (538)
T ss_pred HHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHH
Confidence 21 110 000 001112245789999999999999999999999853 23457888887652
Q ss_pred ------cCchhHhhhcce--eeecCCCH--HHHHHHHHHHHH----HcCCCCCHHHHH-------HHHH-hcCCCHHHHH
Q psy879 138 ------KIIEPIQSRCAM--LRYNKLTD--AQLLSKVIEICE----KENISHTNDGLE-------AIVF-TAQGDMRQAL 195 (317)
Q Consensus 138 ------~l~~~i~sR~~~--i~f~~~~~--~~~~~~l~~~~~----~~~~~i~~~~~~-------~l~~-~~~gd~r~~i 195 (317)
.+.+.+--|+.. +++||+.+ +++..++...+. ..+..++++++. .+.. ...||+|+.-
T Consensus 376 ~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~ 455 (538)
T PRK15424 376 EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELR 455 (538)
T ss_pred HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHH
Confidence 345566667655 77777765 455555544443 356677777663 3332 2689999999
Q ss_pred HHHHHhhh--C---CCcccHHHH
Q psy879 196 NNLQSTHN--G---FGHVTAEYV 213 (317)
Q Consensus 196 ~~l~~~~~--~---~~~i~~~~v 213 (317)
|.++.++. . ...++.+++
T Consensus 456 nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 456 NLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHHHHhcCCCCcCccCHHHh
Confidence 99997654 1 134555544
No 201
>KOG0735|consensus
Probab=99.41 E-value=8.4e-12 Score=114.49 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=118.9
Q ss_pred CCCcccCCHHHHHHHHHHHhcC------------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---
Q psy879 8 TFSDIVGNEDTVERLKVFSSSG------------NV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--- 71 (317)
.|+|+-|-.++++.+...+.-. +. ..+|+|||||||||.+|.+++.. ++..++.+.+..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~-----~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN-----SNLRFISVKGPELLS 739 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh-----CCeeEEEecCHHHHH
Confidence 4889989888888887776421 11 24999999999999999999987 344556554422
Q ss_pred ---CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhc--cCCceEEEEecC
Q psy879 72 ---DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIY--SNTTRFALACNN 135 (317)
Q Consensus 72 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~--~~~~~~il~~~~ 135 (317)
..+...+|+.+.... ..++.|+++||+|.+.+ ...|.|+.-|+.- -..+.++.+|.+
T Consensus 740 KyIGaSEq~vR~lF~rA~-------~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQ-------SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHhcccHHHHHHHHHHhh-------ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 122344555554432 15789999999998754 4678888888733 234556667888
Q ss_pred CCcCchhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q psy879 136 SEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG 189 (317)
Q Consensus 136 ~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 189 (317)
++-++|++.+-+.. +.++.|++.+..++++.......+. ++-.++.++..+.|
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDG 868 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCC
Confidence 99999999876655 9999999999999998877543321 23335667766544
No 202
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.40 E-value=1.8e-11 Score=112.57 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=100.4
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc-Ch-----------
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR-GI----------- 75 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~-~~----------- 75 (317)
.|++++||..+++.+...+..|. |++|.||||+|||++++.+...+.. ......++....... +.
T Consensus 190 d~~dv~Gq~~~~~al~~aa~~g~--~vlliG~pGsGKTtlar~l~~llp~-~~~~~~le~~~i~s~~g~~~~~~~~~~~P 266 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAAGGH--NLLLFGPPGSGKTMLASRLQGILPP-LTNEEAIETARIWSLVGKLIDRKQIKQRP 266 (499)
T ss_pred CHHHhcCcHHHHhhhhhhccCCC--EEEEEecCCCCHHHHHHHHhcccCC-CCCcEEEeccccccchhhhccccccccCC
Confidence 68999999999999998887776 8999999999999999999986532 222222222211000 00
Q ss_pred -------HHHHHHHHHH-HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEec
Q psy879 76 -------DTVRNKIKMF-AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACN 134 (317)
Q Consensus 76 -------~~i~~~~~~~-~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~ 134 (317)
......++.. ...+..+..+.+.+++|||++.+.+..++.|++.||.. +.++.+|.++|
T Consensus 267 f~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~N 346 (499)
T TIGR00368 267 FRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMN 346 (499)
T ss_pred ccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecC
Confidence 0000001100 00111122346789999999999999999999999853 34677888887
Q ss_pred CC------C-----------------cCchhHhhhcce-eeecCCCHHHH
Q psy879 135 NS------E-----------------KIIEPIQSRCAM-LRYNKLTDAQL 160 (317)
Q Consensus 135 ~~------~-----------------~l~~~i~sR~~~-i~f~~~~~~~~ 160 (317)
+- . ++..++.+|+.. +.+++++.+++
T Consensus 347 pcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 347 PCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred CcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 52 1 578999999988 77777755443
No 203
>PHA02244 ATPase-like protein
Probab=99.39 E-value=3e-12 Score=111.30 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH---HHHHHHhhcccCCCCc
Q psy879 20 ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN---KIKMFAQQKVTLPPGR 96 (317)
Q Consensus 20 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~ 96 (317)
..+..++..+. +++|+||+|||||++|++++..+. .+++.++.... ...+.. .-+.+...++......
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg-----~pfv~In~l~d--~~~L~G~i~~~g~~~dgpLl~A~~~ 180 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD-----LDFYFMNAIMD--EFELKGFIDANGKFHETPFYEAFKK 180 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecChH--HHhhcccccccccccchHHHHHhhc
Confidence 34666777766 699999999999999999999863 23555543210 000000 0000000010001145
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHhhh-----------ccCCceEEEEecCC-----------CcCchhHhhhcceeeecC
Q psy879 97 HKIVILDEADSMTDGAQQALRRTMEI-----------YSNTTRFALACNNS-----------EKIIEPIQSRCAMLRYNK 154 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~~~~ll~~le~-----------~~~~~~~il~~~~~-----------~~l~~~i~sR~~~i~f~~ 154 (317)
..+++|||++.+.++.+..|...+++ .+++.++|+++|.. ..+.+++++||..++|..
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dy 260 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCC
Confidence 68999999999999999999999862 24678899999973 467899999999999998
Q ss_pred CCH
Q psy879 155 LTD 157 (317)
Q Consensus 155 ~~~ 157 (317)
+++
T Consensus 261 p~~ 263 (383)
T PHA02244 261 DEK 263 (383)
T ss_pred CcH
Confidence 874
No 204
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.38 E-value=4.3e-11 Score=112.65 Aligned_cols=211 Identities=18% Similarity=0.251 Sum_probs=134.6
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC----------
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG---------- 74 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---------- 74 (317)
.|+.|++++||+++++.|..++.++. +++|+||||+|||++++++++.+.+......++.-|+.....
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVPAGK 103 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcchHHHHHHHHHhc
Confidence 57889999999999999999998886 899999999999999999999875432111111111110000
Q ss_pred ---h----------------------------------------------------------------------------
Q psy879 75 ---I---------------------------------------------------------------------------- 75 (317)
Q Consensus 75 ---~---------------------------------------------------------------------------- 75 (317)
+
T Consensus 104 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~~~aP 183 (637)
T PRK13765 104 GKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADKKTAP 183 (637)
T ss_pred CHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCCCCCC
Confidence 0
Q ss_pred ------HHHHHHHHHHHhh----------------cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc---------
Q psy879 76 ------DTVRNKIKMFAQQ----------------KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS--------- 124 (317)
Q Consensus 76 ------~~i~~~~~~~~~~----------------~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~--------- 124 (317)
....+.++..... +..+..+...+++|||++.|.+..|..|++.|++..
T Consensus 184 vi~~~~p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~ 263 (637)
T PRK13765 184 FVDATGAHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSER 263 (637)
T ss_pred EEEeCCCCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccc
Confidence 0000111110000 000011346899999999999999999999996321
Q ss_pred ------------CCceEEEEecCC--CcCchhHhhhcc---e-eeecCC---CHHHHHHHHHHHHH---Hc--CCCCCHH
Q psy879 125 ------------NTTRFALACNNS--EKIIEPIQSRCA---M-LRYNKL---TDAQLLSKVIEICE---KE--NISHTND 178 (317)
Q Consensus 125 ------------~~~~~il~~~~~--~~l~~~i~sR~~---~-i~f~~~---~~~~~~~~l~~~~~---~~--~~~i~~~ 178 (317)
.++++|++++.. ..+.+.+.+|+. + +.|+.- +++....++...++ ++ -..++++
T Consensus 264 ~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~e 343 (637)
T PRK13765 264 SSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRD 343 (637)
T ss_pred cccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHH
Confidence 245688888875 467899999986 2 666643 34555555554443 22 2368999
Q ss_pred HHHHHHHhc---CCC-------HHHHHHHHHHhhh-----CCCcccHHHHHhhc
Q psy879 179 GLEAIVFTA---QGD-------MRQALNNLQSTHN-----GFGHVTAEYVFKVC 217 (317)
Q Consensus 179 ~~~~l~~~~---~gd-------~r~~i~~l~~~~~-----~~~~i~~~~v~~~~ 217 (317)
++..+++.+ .|+ .|++.++++.+.. +.+.++.++|.++.
T Consensus 344 AVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~ 397 (637)
T PRK13765 344 AVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAK 397 (637)
T ss_pred HHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHH
Confidence 988887643 233 5666666655432 34567888887655
No 205
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.37 E-value=1.1e-11 Score=109.41 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=78.7
Q ss_pred ceeEEEEeCCCCCCHH------------HHHHHHHHhhhc----------cCCceEEEEec----CCCcCchhHhhhcce
Q psy879 96 RHKIVILDEADSMTDG------------AQQALRRTMEIY----------SNTTRFALACN----NSEKIIEPIQSRCAM 149 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~------------~~~~ll~~le~~----------~~~~~~il~~~----~~~~l~~~i~sR~~~ 149 (317)
...||+|||+|++... .|.+||+++|.. ..++.||++.. .+..+.|.+..|+.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 5689999999998532 589999999942 13444555432 345789999999998
Q ss_pred -eeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHhhh
Q psy879 150 -LRYNKLTDAQLLSKVIE----I-------CEKENI--SHTNDGLEAIVFTA--------QGDMRQALNNLQSTHN 203 (317)
Q Consensus 150 -i~f~~~~~~~~~~~l~~----~-------~~~~~~--~i~~~~~~~l~~~~--------~gd~r~~i~~l~~~~~ 203 (317)
+.+.+++.+++.++|.. . ++.+|+ .++++++..+++.+ +-..|.+...++.+..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 99999999999999843 2 334565 56899998888664 3457777777766543
No 206
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.37 E-value=4.3e-11 Score=111.57 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=130.9
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH-HHHH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN-KIKM 84 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~ 84 (317)
.+.+++|+...++.+...++. ....+++|+|++||||+++|+++...- .....+++.++|.... ...+.. .++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~v~c~~~~-~~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS--PRADKPLVYLNCAALP-ESLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEEEEcccCC-hHHHHHHhcCc
Confidence 568899998887776665543 222359999999999999999999863 2335578888886432 222221 1111
Q ss_pred HH--------hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------Cc
Q psy879 85 FA--------QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EK 138 (317)
Q Consensus 85 ~~--------~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~ 138 (317)
.. .....+..+....++|||++.|..+.|..|++++++.. .++++|++|+.. ..
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 00 00001122457789999999999999999999998532 256889988764 24
Q ss_pred CchhHhhhcce--eeecCCCH--HHHHHHHH----HHHHHc---CCCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh
Q psy879 139 IIEPIQSRCAM--LRYNKLTD--AQLLSKVI----EICEKE---NISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 139 l~~~i~sR~~~--i~f~~~~~--~~~~~~l~----~~~~~~---~~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~ 203 (317)
+.+.+..|+.. |.+||+.+ +++..+.. +.+.+. ...++++++..+... ..||+|+.-+.++.++.
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~ 418 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAAL 418 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 66777777765 77777765 34444333 333332 356899999988766 68999999999988664
No 207
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.36 E-value=3e-11 Score=112.43 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=95.2
Q ss_pred cccCCHHHHHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh--H
Q psy879 11 DIVGNEDTVERLKVFSSSGNV------------PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI--D 76 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~ 76 (317)
.++|++.++..+.-.+-+|.. .|+||+|+||+|||++++++++.... ..+......+..+. .
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r----~~~~~~~~~~~~~l~~~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR----AVYTTGKGSSAVGLTAA 279 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc----ceEcCCCCCCcCCcccc
Confidence 567888888877766665532 27999999999999999999997421 11111111111111 1
Q ss_pred HHHHHH-HHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC-----
Q psy879 77 TVRNKI-KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE----- 137 (317)
Q Consensus 77 ~i~~~~-~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~----- 137 (317)
.+++.. +.+...+..+..++..+++|||++.+.+..+.+|+..||+. +..+.+|.++|+..
T Consensus 280 ~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~ 359 (509)
T smart00350 280 VTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDP 359 (509)
T ss_pred ceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCC
Confidence 111100 11111111122356789999999999999999999999853 24566788888642
Q ss_pred --------cCchhHhhhcce--eeecCCCHHHHHHHHHH
Q psy879 138 --------KIIEPIQSRCAM--LRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 138 --------~l~~~i~sR~~~--i~f~~~~~~~~~~~l~~ 166 (317)
.+++++.|||.. +-..+++.+.-.+++..
T Consensus 360 ~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 360 KLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred CcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 588999999955 44445555544444444
No 208
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.36 E-value=9.3e-11 Score=94.70 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=131.1
Q ss_pred ccCCCCCCcccCCHHHHHHHH----HHHhcCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH
Q psy879 3 KYRPQTFSDIVGNEDTVERLK----VFSSSGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT 77 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~----~~l~~~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 77 (317)
.|-|-.+.+++|-+...+.|. .++ +|.+. |+|++|..|+|||++++++..++.... ...++++..+......
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~-~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g--lrLVEV~k~dl~~Lp~ 129 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA-EGLPANNVLLWGARGTGKSSLVKALLNEYADEG--LRLVEVDKEDLATLPD 129 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH-cCCcccceEEecCCCCChHHHHHHHHHHHHhcC--CeEEEEcHHHHhhHHH
Confidence 445566888999777766653 334 45554 599999999999999999999986543 3477777655444444
Q ss_pred HHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHH-HHHHHHHhh----hccCCceEEEEecCCCcCc------------
Q psy879 78 VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA-QQALRRTME----IYSNTTRFALACNNSEKII------------ 140 (317)
Q Consensus 78 i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~-~~~ll~~le----~~~~~~~~il~~~~~~~l~------------ 140 (317)
+-+.+. .. ..+-||+.|+..+=..+. -.+|...|| ..|.|+.|..|+|..+-+.
T Consensus 130 l~~~Lr---~~------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~e 200 (287)
T COG2607 130 LVELLR---AR------PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGE 200 (287)
T ss_pred HHHHHh---cC------CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccc
Confidence 433333 22 356789999887765544 344444554 5678888888888754322
Q ss_pred ----------hhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HhcCCCHHHHHHHHHHhhh
Q psy879 141 ----------EPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV-----FTAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 141 ----------~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~-----~~~~gd~r~~i~~l~~~~~ 203 (317)
-++..||.. +.|.|.++++-..++...++..++.++++.++.=+ .+.+.+-|.|-..++.++.
T Consensus 201 ih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 201 IHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred cChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 134567766 99999999999999999999999999886665433 3345677777777766554
No 209
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.36 E-value=1.4e-11 Score=108.63 Aligned_cols=195 Identities=14% Similarity=0.185 Sum_probs=130.7
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHH
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF 85 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 85 (317)
.+++++|.....+.+...++.-.+ .++|++|++||||+.+|+.+... .......+++.+||......-...+.++..
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~-s~r~~~~PFI~~NCa~~~en~~~~eLFG~~ 154 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHAL-SARRAEAPFIAFNCAAYSENLQEAELFGHE 154 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHh-hhcccCCCEEEEEHHHhCcCHHHHHHhccc
Confidence 378899987666655555543111 26999999999999999999943 222267889999997643333333333211
Q ss_pred ---Hhh-----cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-----------ccCCceEEEEecCC--CcCch--h
Q psy879 86 ---AQQ-----KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI-----------YSNTTRFALACNNS--EKIIE--P 142 (317)
Q Consensus 86 ---~~~-----~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~-----------~~~~~~~il~~~~~--~~l~~--~ 142 (317)
... +..+-....+.+++||+..|....|..|++++++ .+.++++|++|+.. ..+.. +
T Consensus 155 kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~d 234 (403)
T COG1221 155 KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGAD 234 (403)
T ss_pred cceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcc
Confidence 111 1111124678999999999999999999999996 45678888888764 35555 7
Q ss_pred Hhhhcce--eeecCCCHH--HHHH----HHHHHHHHcCCCC---CHHHHHHHHHh-cCCCHHHHHHHHHHhhh
Q psy879 143 IQSRCAM--LRYNKLTDA--QLLS----KVIEICEKENISH---TNDGLEAIVFT-AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 143 i~sR~~~--i~f~~~~~~--~~~~----~l~~~~~~~~~~i---~~~~~~~l~~~-~~gd~r~~i~~l~~~~~ 203 (317)
+..|+.. |..||+.+. ++.. ++...+++.+..+ +++++..+... ..||+|+..|.++.++.
T Consensus 235 l~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~ 307 (403)
T COG1221 235 LTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVA 307 (403)
T ss_pred hhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 7776555 888887764 3322 3444556655544 23556655544 68999999999998665
No 210
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=7.9e-11 Score=105.89 Aligned_cols=205 Identities=17% Similarity=0.226 Sum_probs=135.0
Q ss_pred CCCCcccCCHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKVFSSSG--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKM 84 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 84 (317)
-+|++++|.......+...++.. ....+|+.|++||||..+|+++-+. .+..+.+|+.+||.. ....-+...+-.
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~--S~R~~~PFIaiNCaA-iPe~LlESELFG 318 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNL--SPRANGPFIAINCAA-IPETLLESELFG 318 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhc--CcccCCCeEEEeccc-CCHHHHHHHHhC
Confidence 46999999876666655555432 2335999999999999999999986 445567899999864 222222222221
Q ss_pred HHhhccc----------CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCCC------
Q psy879 85 FAQQKVT----------LPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNSE------ 137 (317)
Q Consensus 85 ~~~~~~~----------~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~~------ 137 (317)
....+++ +-.+....+|+||+..|....|..||+.+++. +-++++|.+||..-
T Consensus 319 ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~ 398 (560)
T COG3829 319 YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAE 398 (560)
T ss_pred cCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhc
Confidence 1222221 11245789999999999999999999999853 35677899998752
Q ss_pred -cCchhHhhhcce--eeecCCCH--HHHHHH----HHHHHHHcC--C-CCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh-
Q psy879 138 -KIIEPIQSRCAM--LRYNKLTD--AQLLSK----VIEICEKEN--I-SHTNDGLEAIVFT-AQGDMRQALNNLQSTHN- 203 (317)
Q Consensus 138 -~l~~~i~sR~~~--i~f~~~~~--~~~~~~----l~~~~~~~~--~-~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~- 203 (317)
.+-..+-=|..+ +..||+-+ +++... |.+...+.+ + .++++++..+.+. +.||.|+.-|.++.+..
T Consensus 399 G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~ 478 (560)
T COG3829 399 GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNL 478 (560)
T ss_pred CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Confidence 344444445555 55555542 333333 333233333 2 3788998887765 79999999999998763
Q ss_pred --CCCcccHHHHH
Q psy879 204 --GFGHVTAEYVF 214 (317)
Q Consensus 204 --~~~~i~~~~v~ 214 (317)
+...|+.++.-
T Consensus 479 ~~~~~~I~~~~lp 491 (560)
T COG3829 479 VESDGLIDADDLP 491 (560)
T ss_pred cCCcceeehhhcc
Confidence 34456666543
No 211
>KOG0730|consensus
Probab=99.32 E-value=8.5e-11 Score=107.44 Aligned_cols=147 Identities=17% Similarity=0.239 Sum_probs=111.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC------CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN------DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEAD 106 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d 106 (317)
..|+|||||+|||.++++++++. +..++.+++.. ..+...+|..+...... ..+.+++|||+|
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~-----~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~------~~psii~IdEld 288 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEY-----GAFLFLINGPELISKFPGETESNLRKAFAEALKF------QVPSIIFIDELD 288 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHh-----CceeEecccHHHHHhcccchHHHHHHHHHHHhcc------CCCeeEeHHhHh
Confidence 49999999999999999999985 23455555532 12233445555444322 238899999999
Q ss_pred CCCH----------HHHHHHHHHhhhcc--CCceEEEEecCCCcCchhHhh-hcce-eeecCCCHHHHHHHHHHHHHHcC
Q psy879 107 SMTD----------GAQQALRRTMEIYS--NTTRFALACNNSEKIIEPIQS-RCAM-LRYNKLTDAQLLSKVIEICEKEN 172 (317)
Q Consensus 107 ~l~~----------~~~~~ll~~le~~~--~~~~~il~~~~~~~l~~~i~s-R~~~-i~f~~~~~~~~~~~l~~~~~~~~ 172 (317)
.+.+ +...+|+.+|+... .+++++.++|+++.+.+++++ |+.. +.+.-|+..+..++++...++.+
T Consensus 289 ~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~ 368 (693)
T KOG0730|consen 289 ALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN 368 (693)
T ss_pred hhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcC
Confidence 9975 24567888888665 677788889999999999997 7776 99999999999999999988777
Q ss_pred CCCCHHHHHHHHHhcCCCH
Q psy879 173 ISHTNDGLEAIVFTAQGDM 191 (317)
Q Consensus 173 ~~i~~~~~~~l~~~~~gd~ 191 (317)
.. ++..+..++..+.|-.
T Consensus 369 ~~-~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 369 LL-SDVDLEDIAVSTHGYV 386 (693)
T ss_pred Cc-chhhHHHHHHHccchh
Confidence 65 5677888888877654
No 212
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.32 E-value=4e-10 Score=95.46 Aligned_cols=202 Identities=15% Similarity=0.168 Sum_probs=122.2
Q ss_pred cCCHHH---HHHHHHHHh---cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCceEEecCCCCcChHHHHHH
Q psy879 13 VGNEDT---VERLKVFSS---SGNVPNIIISGPPGVGKTTTILCLARILLGPSF-----KDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 13 ~g~~~~---~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~ 81 (317)
+|.+.+ ++.|...+. ..+.|+++|+|++|.|||++++.+++.- .... ..+++.+......+...+...
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 555544 444555454 4567889999999999999999999863 2221 123444433222222222111
Q ss_pred HHHHHhhccc---------------CCCCceeEEEEeCCCCCC---HHHHHHHHHHhhhccC--CceEEEEecCC----C
Q psy879 82 IKMFAQQKVT---------------LPPGRHKIVILDEADSMT---DGAQQALRRTMEIYSN--TTRFALACNNS----E 137 (317)
Q Consensus 82 ~~~~~~~~~~---------------~~~~~~~vliiDE~d~l~---~~~~~~ll~~le~~~~--~~~~il~~~~~----~ 137 (317)
+-.....+.. +..-+.+++||||++++. ...|..++..+...++ .+.+|++.... -
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRAL 195 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHh
Confidence 1111111110 001257899999999973 2345555555543333 34466665443 2
Q ss_pred cCchhHhhhcceeeecCCCHH-HHHHHHHHHHHH------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-----CC
Q psy879 138 KIIEPIQSRCAMLRYNKLTDA-QLLSKVIEICEK------ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GF 205 (317)
Q Consensus 138 ~l~~~i~sR~~~i~f~~~~~~-~~~~~l~~~~~~------~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-----~~ 205 (317)
.-++.+.||+..+..+++..+ +....|...-.. .++ -+++...++...++|.+.....++..++. +.
T Consensus 196 ~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l-~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 196 RTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNL-ASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred ccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCC
Confidence 567999999999999999865 444444443221 122 24566789999999999999998876554 66
Q ss_pred CcccHHHHHhh
Q psy879 206 GHVTAEYVFKV 216 (317)
Q Consensus 206 ~~i~~~~v~~~ 216 (317)
+.|+.+.+.++
T Consensus 275 E~It~~~l~~~ 285 (302)
T PF05621_consen 275 ERITREILDKI 285 (302)
T ss_pred ceecHHHHhhC
Confidence 78888887664
No 213
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.32 E-value=3.3e-12 Score=98.46 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=72.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHH------HHhhcccCCCCceeEEEEeCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKM------FAQQKVTLPPGRHKIVILDEAD 106 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~vliiDE~d 106 (317)
+++|+||||+|||++++.+++.+ +..+..++........++...... +...+.........+++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 58999999999999999999997 334555555544444433211110 0000000001258899999999
Q ss_pred CCCHHHHHHHHHHhhhc-------------cC------CceEEEEecCCC----cCchhHhhhc
Q psy879 107 SMTDGAQQALRRTMEIY-------------SN------TTRFALACNNSE----KIIEPIQSRC 147 (317)
Q Consensus 107 ~l~~~~~~~ll~~le~~-------------~~------~~~~il~~~~~~----~l~~~i~sR~ 147 (317)
...++.++.|+..+++. +. +.++|+++|+.. .+.+++++||
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 99999999999999832 12 378899999877 8999999997
No 214
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.31 E-value=7.1e-12 Score=99.43 Aligned_cols=101 Identities=25% Similarity=0.379 Sum_probs=67.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHc-CCCCCCceEEecCCCCcC----hHHHHHHHHHHHhhcccCCCCceeEEEEeCCC
Q psy879 32 PNIIISGPPGVGKTTTILCLARILL-GPSFKDAVLELNASNDRG----IDTVRNKIKMFAQQKVTLPPGRHKIVILDEAD 106 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d 106 (317)
.+++|+||+|+|||.+++++++.+. +.. ..++.++.+.... ...+...+.... .. .......||++||+|
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~--~~~~~~d~s~~~~~~~~~~~~~~l~~~~~-~~--v~~~~~gVVllDEid 78 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSE--RPLIRIDMSEYSEGDDVESSVSKLLGSPP-GY--VGAEEGGVVLLDEID 78 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSC--CEEEEEEGGGHCSHHHCSCHCHHHHHHTT-CH--HHHHHHTEEEEETGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCc--cchHHHhhhcccccchHHhhhhhhhhccc-ce--eeccchhhhhhHHHh
Confidence 3699999999999999999999996 333 3455555543333 111111121110 00 000234599999999
Q ss_pred CCCH-----------HHHHHHHHHhhhc-----------cCCceEEEEecCCC
Q psy879 107 SMTD-----------GAQQALRRTMEIY-----------SNTTRFALACNNSE 137 (317)
Q Consensus 107 ~l~~-----------~~~~~ll~~le~~-----------~~~~~~il~~~~~~ 137 (317)
+..+ ..++.|++.+|+. -.++.||+++|-..
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9999 9999999999842 25677888888654
No 215
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.31 E-value=1.3e-10 Score=112.32 Aligned_cols=194 Identities=15% Similarity=0.181 Sum_probs=127.0
Q ss_pred CCCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH-HH
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK-IK 83 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~~ 83 (317)
..|++++|+...++.+...++. ....+++|+|++|||||++|+++...- ...+.+++.++|.... ...+... ++
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~-~~~~~~~lfg 449 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMP-AGLLESDLFG 449 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCC-hhHhhhhhcC
Confidence 4688999998777776544432 222369999999999999999998863 2234567777776421 1111111 11
Q ss_pred HHH--------hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCCC-------
Q psy879 84 MFA--------QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNSE------- 137 (317)
Q Consensus 84 ~~~--------~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~~------- 137 (317)
... .....+....+.+++|||++.+..+.|..|++++++.. .++++|++|+..-
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 529 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 529 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence 000 00000112356899999999999999999999997532 3567888887642
Q ss_pred cCchhHhhhcce--eeecCCCH--HHHHHHHH----HHHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh
Q psy879 138 KIIEPIQSRCAM--LRYNKLTD--AQLLSKVI----EICEKENI---SHTNDGLEAIVFT-AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 138 ~l~~~i~sR~~~--i~f~~~~~--~~~~~~l~----~~~~~~~~---~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~ 203 (317)
.+.+.+-.|+.. |.+||+.+ +++..++. +.+.+.|. .++++++..+... ..||+|+..+.++.++.
T Consensus 530 ~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 607 (686)
T ss_pred cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 345556666555 77777764 44444433 33433343 4789999888765 68999999999998764
No 216
>KOG0732|consensus
Probab=99.30 E-value=7.9e-11 Score=113.61 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=129.9
Q ss_pred CCCcccCCHHHHHHHHHHHhc------------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--C
Q psy879 8 TFSDIVGNEDTVERLKVFSSS------------GNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--D 72 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~------------~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--~ 72 (317)
.|+++-|-++++..|+..+-. -.+|. +||+||||||||..|+++|..+........++--...+ .
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls 342 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS 342 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhc
Confidence 589999999999998887531 12344 99999999999999999999864322223232222211 1
Q ss_pred cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------HHHHHHHHhhhcc--CCceEEEEecCCCcC
Q psy879 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------AQQALRRTMEIYS--NTTRFALACNNSEKI 139 (317)
Q Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~~~~ll~~le~~~--~~~~~il~~~~~~~l 139 (317)
....+..+.+...+..+. ...+.|+++||+|.+.+- ....|+..|...+ +.+++|.+||+++.+
T Consensus 343 kwvgEaERqlrllFeeA~---k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 343 KWVGEAERQLRLLFEEAQ---KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred cccCcHHHHHHHHHHHHh---ccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 222222233333333321 146889999999987531 2456777787554 346677789999999
Q ss_pred chhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy879 140 IEPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199 (317)
Q Consensus 140 ~~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~ 199 (317)
+++++..... ++|+.++.+...+++.-.-.+..-.+.......+++.+.|-.+.-+..|.
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 9999887765 99999999988888877655545567788888999888776666555553
No 217
>KOG0744|consensus
Probab=99.30 E-value=2.5e-11 Score=101.97 Aligned_cols=129 Identities=21% Similarity=0.308 Sum_probs=89.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcC----CCCCCceEEecCCCCc---------ChHHHHHHHHHHHhhcccCCCCceeEE
Q psy879 34 IIISGPPGVGKTTTILCLARILLG----PSFKDAVLELNASNDR---------GIDTVRNKIKMFAQQKVTLPPGRHKIV 100 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~----~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~vl 100 (317)
+|++||||||||++.+++|+.+.- .......+++|+.... -+..+.+.+......+ +.--.|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~-----~~lVfv 254 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR-----GNLVFV 254 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC-----CcEEEE
Confidence 899999999999999999999841 1122345677764311 1223333344333332 445678
Q ss_pred EEeCCCCCCH---------------HHHHHHHHHhhhcc--CCceEEEEecCCCcCchhHhhhcce-eeecCCCHHHHHH
Q psy879 101 ILDEADSMTD---------------GAQQALRRTMEIYS--NTTRFALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLS 162 (317)
Q Consensus 101 iiDE~d~l~~---------------~~~~~ll~~le~~~--~~~~~il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~ 162 (317)
+|||++.+.. ...|+++..++... +++.+..|+|-.+.++.++..|... ....+|+...+..
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~ 334 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYE 334 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHH
Confidence 9999998743 24788998888643 4444444555668999999999988 7778888888888
Q ss_pred HHHHH
Q psy879 163 KVIEI 167 (317)
Q Consensus 163 ~l~~~ 167 (317)
+++.-
T Consensus 335 Ilksc 339 (423)
T KOG0744|consen 335 ILKSC 339 (423)
T ss_pred HHHHH
Confidence 87764
No 218
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.29 E-value=1.2e-11 Score=99.04 Aligned_cols=162 Identities=15% Similarity=0.226 Sum_probs=109.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC-CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCC----CCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFK-DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEA----DSM 108 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~----d~l 108 (317)
|+|||+.-.-+...++.+.+.+...... ..+..+.... ... .+.+..+...++. +++++|+|.++ +..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~---~~l~~~~~s~slF---~~~klvii~~~~~l~~~~ 73 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSE-DDI---DELLEELQSPSLF---GDKKLVIIKNAPFLKDKL 73 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS--HH---H-HTTTSTTTTSS---SSEEEEEEE-----TT-S
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEcccc-CcH---HHHHHHHhcCCcc---CCCeEEEEecCccccccc
Confidence 7899999777777777777775443321 2233333221 111 2233333333322 68999999999 556
Q ss_pred CHHHHHHHHHHhhhccCCceEEEEec-CCC---cCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q psy879 109 TDGAQQALRRTMEIYSNTTRFALACN-NSE---KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV 184 (317)
Q Consensus 109 ~~~~~~~ll~~le~~~~~~~~il~~~-~~~---~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~ 184 (317)
..+....|.++++.+++++.+|+.++ ..+ ++.+.+.+.+.++.|.+++..++..|+..++++.|+.+++++++.++
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~ 153 (172)
T PF06144_consen 74 KKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLI 153 (172)
T ss_dssp -TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77789999999999999999888888 333 57788888999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhh
Q psy879 185 FTAQGDMRQALNNLQSTH 202 (317)
Q Consensus 185 ~~~~gd~r~~i~~l~~~~ 202 (317)
...++|++.+.+++++.+
T Consensus 154 ~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 154 ERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHhc
Confidence 999999999999998864
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.1e-11 Score=111.26 Aligned_cols=190 Identities=18% Similarity=0.274 Sum_probs=138.4
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCC-----CceEEecC------CCCc
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK-----DAVLELNA------SNDR 73 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~-----~~~~~~~~------~~~~ 73 (317)
|-..++.++|+++.++++...+....-+|-++.|+||+|||.++..+|..+...... ..++.++- ...+
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyR 244 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYR 244 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccccc
Confidence 345689999999999998888877776678999999999999999999998643321 12333321 1222
Q ss_pred Ch--HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC---------HHHHHHHHHHhhhccCCceEEEEecCCC-----
Q psy879 74 GI--DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT---------DGAQQALRRTMEIYSNTTRFALACNNSE----- 137 (317)
Q Consensus 74 ~~--~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~---------~~~~~~ll~~le~~~~~~~~il~~~~~~----- 137 (317)
+. +.+...+..... +++.++||||++.+. -++.|.|...|.. +...+|.+|+..+
T Consensus 245 GeFEeRlk~vl~ev~~-------~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~i 315 (786)
T COG0542 245 GEFEERLKAVLKEVEK-------SKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYI 315 (786)
T ss_pred CcHHHHHHHHHHHHhc-------CCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHHHHHh
Confidence 21 223334444332 237899999999773 2356778888874 5567788776542
Q ss_pred cCchhHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHhhh
Q psy879 138 KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQG------DMRQALNNLQSTHN 203 (317)
Q Consensus 138 ~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------d~r~~i~~l~~~~~ 203 (317)
.-++++.+||+.|....|+.++...+|.....+ +++.++++++.+.+..|.. =+.+|+++++.++.
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 468999999999999999999999998876544 6789999999888776642 36789999987765
No 220
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.24 E-value=5e-10 Score=103.30 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=132.6
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH-HH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI-KM 84 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 84 (317)
.+..++|.....+.+...+.. +...+++++|++|+||+++|+.+...- .....+++.++|... ....+...+ +.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s--~~~~~~~v~v~c~~~-~~~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS--DRKDKRFVAINCAAI-PENLLESELFGY 213 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC--CcCCCCeEEEECCCC-ChHHHHHHhcCC
Confidence 456788877666665555542 222358999999999999999998763 223455777877643 222222211 10
Q ss_pred H--------HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------Cc
Q psy879 85 F--------AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EK 138 (317)
Q Consensus 85 ~--------~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~ 138 (317)
. ......+....+.+++|||++.|....|..|++++++.. .++++|++++.. ..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 0 000001112467899999999999999999999998531 256788888765 24
Q ss_pred CchhHhhhcce--eeecCCCH--HHHHH----HHHHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh--C
Q psy879 139 IIEPIQSRCAM--LRYNKLTD--AQLLS----KVIEICEKEN---ISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN--G 204 (317)
Q Consensus 139 l~~~i~sR~~~--i~f~~~~~--~~~~~----~l~~~~~~~~---~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~--~ 204 (317)
+.+.+..|+.. |.+||+.+ +++.. ++.+.+...+ ..++++++..+... ..||+|++.+.++.++. .
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 56667777765 67777754 23333 3333333333 45899999998776 48999999999998765 3
Q ss_pred CCcccHHHH
Q psy879 205 FGHVTAEYV 213 (317)
Q Consensus 205 ~~~i~~~~v 213 (317)
...|+.+++
T Consensus 374 ~~~i~~~~l 382 (445)
T TIGR02915 374 GNQITAEDL 382 (445)
T ss_pred CCcccHHHc
Confidence 446777665
No 221
>KOG0651|consensus
Probab=99.23 E-value=1.1e-10 Score=97.57 Aligned_cols=169 Identities=15% Similarity=0.214 Sum_probs=105.5
Q ss_pred CCCcccCCHHHHHHHHHHHh------------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---
Q psy879 8 TFSDIVGNEDTVERLKVFSS------------SGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--- 71 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~------------~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--- 71 (317)
+|+++-|--.++..|...+. +=.+|- ++||||||+|||.++++++..+.. .++-+..+.
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-----nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-----NFLKVVSSALVD 204 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-----ceEEeeHhhhhh
Confidence 68888887777777666542 112344 999999999999999999998632 233333221
Q ss_pred -C--cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhc-----cCCceEEEE
Q psy879 72 -D--RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIY-----SNTTRFALA 132 (317)
Q Consensus 72 -~--~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~-----~~~~~~il~ 132 (317)
. ....-||+.+...... .+.++++||+|.... ..+..|..++++. -..+.+|++
T Consensus 205 kyiGEsaRlIRemf~yA~~~-------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Ima 277 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREV-------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMA 277 (388)
T ss_pred hhcccHHHHHHHHHHHHhhh-------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEe
Confidence 1 1223345544444433 468999999997532 2456666665532 246789999
Q ss_pred ecCCCcCchhHhhhcce---eeecCCCHHHHHHHHHHH---HHHcCCCCCHHHHHHHHHhcCC
Q psy879 133 CNNSEKIIEPIQSRCAM---LRYNKLTDAQLLSKVIEI---CEKENISHTNDGLEAIVFTAQG 189 (317)
Q Consensus 133 ~~~~~~l~~~i~sR~~~---i~f~~~~~~~~~~~l~~~---~~~~~~~i~~~~~~~l~~~~~g 189 (317)
+|+++.++|++.+-... ++.+.|.+.....+++-. ....| .++.+++-++++-.+|
T Consensus 278 tNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~G-eid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 278 TNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHG-EIDDEAILKLVDGFNG 339 (388)
T ss_pred cCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccc-cccHHHHHHHHhccCh
Confidence 99999999999765554 555555554433333322 12223 4566666666666555
No 222
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.22 E-value=5.1e-10 Score=105.57 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=117.0
Q ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC--CC--cChHHHHHHHH--HHHhhcccCCCCceeEE
Q psy879 27 SSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS--ND--RGIDTVRNKIK--MFAQQKVTLPPGRHKIV 100 (317)
Q Consensus 27 ~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~--~~--~~~~~i~~~~~--~~~~~~~~~~~~~~~vl 100 (317)
-+....|++|.|++|+|||++++++++.+.. ..+++.+... .. .+...+...+. .+...+..+......++
T Consensus 12 v~p~~g~vLl~G~~GtgKs~lar~l~~~~~~---~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL 88 (589)
T TIGR02031 12 VDPSLGGVAIRARAGTGKTALARALAEILPP---IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVL 88 (589)
T ss_pred cCCCcceEEEEcCCCcHHHHHHHHHHHhCCc---CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcE
Confidence 3445778999999999999999999997532 1234444421 11 11111111111 01111112223566899
Q ss_pred EEeCCCCCCHHHHHHHHHHhhhcc-------------CCceEEEEecCCC---cCchhHhhhcce-eeecCC-CHHHHHH
Q psy879 101 ILDEADSMTDGAQQALRRTMEIYS-------------NTTRFALACNNSE---KIIEPIQSRCAM-LRYNKL-TDAQLLS 162 (317)
Q Consensus 101 iiDE~d~l~~~~~~~ll~~le~~~-------------~~~~~il~~~~~~---~l~~~i~sR~~~-i~f~~~-~~~~~~~ 162 (317)
++||++.+.+..|+.|+..|++.. ..+.+|.++|... .+.+++..|+.. +....+ +.++..+
T Consensus 89 ~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~e 168 (589)
T TIGR02031 89 YVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVE 168 (589)
T ss_pred eccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHH
Confidence 999999999999999999998532 3456777777654 688999999987 444433 3344333
Q ss_pred HHHHHH-----------------------HHcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHh-----hhCCCcccH
Q psy879 163 KVIEIC-----------------------EKENISHTNDGLEAIVFTA---QG-DMRQALNNLQST-----HNGFGHVTA 210 (317)
Q Consensus 163 ~l~~~~-----------------------~~~~~~i~~~~~~~l~~~~---~g-d~r~~i~~l~~~-----~~~~~~i~~ 210 (317)
++.... ....+.++++.+.+++..+ +- ++|..+..++.+ ..+...++.
T Consensus 169 il~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~ 248 (589)
T TIGR02031 169 IVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTE 248 (589)
T ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCH
Confidence 333211 1135678888887777553 32 377777666542 226778999
Q ss_pred HHHHhhc
Q psy879 211 EYVFKVC 217 (317)
Q Consensus 211 ~~v~~~~ 217 (317)
+|+..+.
T Consensus 249 ~Dv~~a~ 255 (589)
T TIGR02031 249 EDLKLAV 255 (589)
T ss_pred HHHHHHH
Confidence 9997644
No 223
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.22 E-value=6.7e-10 Score=103.13 Aligned_cols=204 Identities=17% Similarity=0.163 Sum_probs=133.6
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH-HH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI-KM 84 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 84 (317)
.+.+++|.....+.+...+.. ....++++.|++||||+++|+++.... .....+++.++|... ..+.+...+ +.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s--~~~~~~~i~i~c~~~-~~~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS--PRAKAPFIALNMAAI-PKDLIESELFGH 212 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC--CCCCCCeEeeeCCCC-CHHHHHHHhcCC
Confidence 366788877665555444432 122259999999999999999998863 233456788887643 222222221 10
Q ss_pred HHh--------hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------Cc
Q psy879 85 FAQ--------QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EK 138 (317)
Q Consensus 85 ~~~--------~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~ 138 (317)
... ....+....+..++|||++.|....|..|++++++.. .++++|++++.. ..
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 000 0001112356789999999999999999999998532 245788888754 25
Q ss_pred CchhHhhhcce--eeecCCCH--HHHHHHHHHH----HHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh--C
Q psy879 139 IIEPIQSRCAM--LRYNKLTD--AQLLSKVIEI----CEKENI---SHTNDGLEAIVFT-AQGDMRQALNNLQSTHN--G 204 (317)
Q Consensus 139 l~~~i~sR~~~--i~f~~~~~--~~~~~~l~~~----~~~~~~---~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~--~ 204 (317)
+.+.+..|+.. +..||+.+ +++..++... +...+. .++++++..+... ..||+|+.-+.++.++. .
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 66888888755 77777764 4444444433 333332 4789999888766 68999999999988765 4
Q ss_pred CCcccHHHHH
Q psy879 205 FGHVTAEYVF 214 (317)
Q Consensus 205 ~~~i~~~~v~ 214 (317)
...|+.+++.
T Consensus 373 ~~~i~~~~l~ 382 (469)
T PRK10923 373 GQEVLIQDLP 382 (469)
T ss_pred CCcccHHHCc
Confidence 4567777763
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.22 E-value=5.5e-11 Score=94.08 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=81.6
Q ss_pred ccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH-HHHHHHhh
Q psy879 12 IVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN-KIKMFAQQ 88 (317)
Q Consensus 12 ~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~ 88 (317)
++|.....+.+...++. ....+++|+|++||||+.+|+++.+. ......+++.++|... ..+.+.. .++.. ..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~-~~~~~e~~LFG~~-~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAAL-PEELLESELFGHE-KG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTTS--HHHHHHHHHEBC-SS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhhh-hcchhhhhhhccc-cc
Confidence 45665555555444432 22246999999999999999999984 3334567899998753 3333322 22210 00
Q ss_pred cc---------cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC-------CcCch
Q psy879 89 KV---------TLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS-------EKIIE 141 (317)
Q Consensus 89 ~~---------~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~-------~~l~~ 141 (317)
.+ .+..+...+++|||++.|....|..|++++++. +.++++|++|+.+ ..+.+
T Consensus 77 ~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~ 156 (168)
T PF00158_consen 77 AFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFRE 156 (168)
T ss_dssp SSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-H
T ss_pred cccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChH
Confidence 00 011146789999999999999999999999842 3467788888864 24555
Q ss_pred hHhhhccee
Q psy879 142 PIQSRCAML 150 (317)
Q Consensus 142 ~i~sR~~~i 150 (317)
.+--|...+
T Consensus 157 dLy~rL~~~ 165 (168)
T PF00158_consen 157 DLYYRLNVF 165 (168)
T ss_dssp HHHHHHTTE
T ss_pred HHHHHhceE
Confidence 555555443
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.20 E-value=1e-09 Score=95.74 Aligned_cols=91 Identities=11% Similarity=-0.016 Sum_probs=63.7
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------CcCchhHhhhcceeeecCCC
Q psy879 95 GRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EKIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~l~~~i~sR~~~i~f~~~~ 156 (317)
+.++++-++|+.+...+.++.|+..+++.. -..+||.++|.. .+..+++++||..+.++.+.
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l 314 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCL 314 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcC
Confidence 467899999999999999999999998531 123355666654 26789999999999888665
Q ss_pred H-HHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q psy879 157 D-AQLLSKVIEICEKE---NISHTNDGLEAIVF 185 (317)
Q Consensus 157 ~-~~~~~~l~~~~~~~---~~~i~~~~~~~l~~ 185 (317)
. .+-.++..+.+... +..+.+.+++.++.
T Consensus 315 ~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 315 RVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred CHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 4 44445555555432 45666766655443
No 226
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.19 E-value=3e-11 Score=89.06 Aligned_cols=110 Identities=25% Similarity=0.238 Sum_probs=58.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHh--h--cccCCCCceeEEEEeCCCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ--Q--KVTLPPGRHKIVILDEADSM 108 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~--~~~~~~~~~~vliiDE~d~l 108 (317)
|+|+.|+||+|||++++++|+.+.. .+..+....+....++... ..+.. . .+....--..++++||+...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~-----~f~RIq~tpdllPsDi~G~-~v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL-----SFKRIQFTPDLLPSDILGF-PVYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-------EEEEE--TT--HHHHHEE-EEEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC-----ceeEEEecCCCCcccceee-eeeccCCCeeEeecChhhhceeeecccccC
Confidence 7899999999999999999999632 2334433333333333211 00000 0 00001112469999999999
Q ss_pred CHHHHHHHHHHhhhc-----------cCCceEEEEecCCC-----cCchhHhhhcc
Q psy879 109 TDGAQQALRRTMEIY-----------SNTTRFALACNNSE-----KIIEPIQSRCA 148 (317)
Q Consensus 109 ~~~~~~~ll~~le~~-----------~~~~~~il~~~~~~-----~l~~~i~sR~~ 148 (317)
.+..|++|++.|++. |....+|.+.|+.+ .++++...|+.
T Consensus 75 ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp -HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 999999999999854 23333444555443 67888888874
No 227
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.18 E-value=1.5e-09 Score=99.52 Aligned_cols=147 Identities=22% Similarity=0.299 Sum_probs=98.0
Q ss_pred CCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC---------------
Q psy879 7 QTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--------------- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--------------- 71 (317)
..|.+++|+..+++.+.-.+..|. +++|+||||+|||++++.++..+... .....++.....
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~--~llliG~~GsGKTtLak~L~gllpp~-~g~e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGH--NLLLIGPPGTGKTMLASRINGLLPDL-SNEEALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCc--EEEEECCCCCcHHHHHHHHhccCCCC-CCcEEEecchhhhhhccccccCCcCCC
Confidence 368888999999999887777776 89999999999999999999876322 222222221100
Q ss_pred -CcCh---HHHHHHHHHH-HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEe
Q psy879 72 -DRGI---DTVRNKIKMF-AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALAC 133 (317)
Q Consensus 72 -~~~~---~~i~~~~~~~-~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~ 133 (317)
.+.+ ......++.- ...+..+......++++||++.+.+..++.|++.||+. +.++.+|.++
T Consensus 265 Pfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~ 344 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAM 344 (506)
T ss_pred CccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEee
Confidence 0000 0011111110 01111222356889999999999999999999999742 4456788888
Q ss_pred cCCC---------------------cCchhHhhhcce-eeecCCC
Q psy879 134 NNSE---------------------KIIEPIQSRCAM-LRYNKLT 156 (317)
Q Consensus 134 ~~~~---------------------~l~~~i~sR~~~-i~f~~~~ 156 (317)
|+.. ++..++.+|+.. +..++++
T Consensus 345 NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 345 NPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred cCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 7642 477799999988 7777764
No 228
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=1.2e-09 Score=97.17 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=130.2
Q ss_pred CCCcccCCHHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh---HHHHHHH
Q psy879 8 TFSDIVGNEDTVERLKVFSS--SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI---DTVRNKI 82 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~~i~~~~ 82 (317)
.+.++||+..+...+...++ ..+...+|+.|++||||..+|++|-+. .+....+++.+||...... .++....
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~--S~R~~kPfV~~NCAAlPesLlESELFGHe 298 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQL--SPRRDKPFVKLNCAALPESLLESELFGHE 298 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhh--CcccCCCceeeeccccchHHHHHHHhccc
Confidence 46789999888777666554 223236999999999999999999986 4445677889998742211 1111111
Q ss_pred HHHH-----hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC-------CcC
Q psy879 83 KMFA-----QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS-------EKI 139 (317)
Q Consensus 83 ~~~~-----~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~-------~~l 139 (317)
+..+ +.+..+-.+++..+++||+.-|....|..|++.+.+. .-.+++|.+||.. .++
T Consensus 299 KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~F 378 (550)
T COG3604 299 KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEF 378 (550)
T ss_pred ccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCcc
Confidence 1111 1111122257889999999999999999999999843 2356689999975 245
Q ss_pred chhHhhhcce--eeecCCCH--HH---HHH-HHHHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh
Q psy879 140 IEPIQSRCAM--LRYNKLTD--AQ---LLS-KVIEICEKEN---ISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN 203 (317)
Q Consensus 140 ~~~i~sR~~~--i~f~~~~~--~~---~~~-~l~~~~~~~~---~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~ 203 (317)
-..+--|..+ +..||+-+ ++ +.. ++++.....| +.+++++++.+.+. ..||.|...|.++.++.
T Consensus 379 RaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavl 454 (550)
T COG3604 379 RADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVL 454 (550)
T ss_pred hhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 5666666666 44455432 12 222 3334334334 46899999998876 68999999999987665
No 229
>KOG0735|consensus
Probab=99.15 E-value=1.8e-09 Score=99.48 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=121.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 109 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~ 109 (317)
+|++++||+|+|||.+++++++++. ...-..+..++|+. ....+.+...+..+...... ..+.||++|+.|.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~---~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALW---YAPSIIVLDDLDCLA 507 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHHh---hCCcEEEEcchhhhh
Confidence 4699999999999999999999975 33333344445543 34455565555554443322 368899999999885
Q ss_pred HH-------------HHHHHH-HHhhh---ccCCceEEEEecCCCcCchhHhhh--cce-eeecCCCHHHHHHHHHHHHH
Q psy879 110 DG-------------AQQALR-RTMEI---YSNTTRFALACNNSEKIIEPIQSR--CAM-LRYNKLTDAQLLSKVIEICE 169 (317)
Q Consensus 110 ~~-------------~~~~ll-~~le~---~~~~~~~il~~~~~~~l~~~i~sR--~~~-i~f~~~~~~~~~~~l~~~~~ 169 (317)
.. ..+.++ +.+.. ....+.+|.+.+....+.+.+.|- ++. +.+++|...+...+|...+.
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 41 112222 33332 233345666677777777777654 443 88999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH---------hhhCCCcccHHHHHhhcCCCCHH
Q psy879 170 KENISHTNDGLEAIVFTAQGD-MRQALNNLQS---------THNGFGHVTAEYVFKVCDEPHPL 223 (317)
Q Consensus 170 ~~~~~i~~~~~~~l~~~~~gd-~r~~i~~l~~---------~~~~~~~i~~~~v~~~~~~~~~~ 223 (317)
+.......+.++.++..++|- ++...-..++ .....+.++.+++.+.+....+.
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPL 651 (952)
T ss_pred hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChH
Confidence 877666677788888888773 3333333333 22244567777777766655543
No 230
>PRK12377 putative replication protein; Provisional
Probab=99.15 E-value=3.3e-10 Score=94.99 Aligned_cols=140 Identities=17% Similarity=0.256 Sum_probs=80.6
Q ss_pred cCCCCCCccc----CCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH
Q psy879 4 YRPQTFSDIV----GNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT 77 (317)
Q Consensus 4 y~P~~~~~~~----g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 77 (317)
++-.+|+.+. |+.+++.....++.+ ....+++|+||||||||+++.++++.+...... +..+...+ -...
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~--v~~i~~~~--l~~~ 143 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRS--VIVVTVPD--VMSR 143 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC--eEEEEHHH--HHHH
Confidence 4455788886 344455554444432 123469999999999999999999998644322 33332211 0111
Q ss_pred HHHHHHHH-HhhcccCCCCceeEEEEeCCC--CCCHHHHHHHHHHhhhccC-CceEEEEecCCC-----cCchhHhhhc
Q psy879 78 VRNKIKMF-AQQKVTLPPGRHKIVILDEAD--SMTDGAQQALRRTMEIYSN-TTRFALACNNSE-----KIIEPIQSRC 147 (317)
Q Consensus 78 i~~~~~~~-~~~~~~~~~~~~~vliiDE~d--~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~-----~l~~~i~sR~ 147 (317)
+......- ......-......+|||||++ ..+...+..|..+++..-. ....|++||... .+.+.+.||.
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 11110000 000000001467799999995 5577788899999986544 466788888642 2334455554
No 231
>PRK08181 transposase; Validated
Probab=99.15 E-value=1.9e-10 Score=97.64 Aligned_cols=105 Identities=17% Similarity=0.306 Sum_probs=65.4
Q ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhc----ccCCCCce
Q psy879 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQK----VTLPPGRH 97 (317)
Q Consensus 22 l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~ 97 (317)
...++.++. +++|+||||+|||+++.+++..+...+. .+..+... .+.+.+....... ........
T Consensus 99 ~~~~~~~~~--nlll~Gp~GtGKTHLa~Aia~~a~~~g~--~v~f~~~~------~L~~~l~~a~~~~~~~~~l~~l~~~ 168 (269)
T PRK08181 99 GDSWLAKGA--NLLLFGPPGGGKSHLAAAIGLALIENGW--RVLFTRTT------DLVQKLQVARRELQLESAIAKLDKF 168 (269)
T ss_pred HHHHHhcCc--eEEEEecCCCcHHHHHHHHHHHHHHcCC--ceeeeeHH------HHHHHHHHHHhCCcHHHHHHHHhcC
Confidence 345777665 7999999999999999999998754332 23333221 1111111100000 00001356
Q ss_pred eEEEEeCCCCCC--HHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 98 KIVILDEADSMT--DGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 98 ~vliiDE~d~l~--~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
.++||||++... ...+..|+++++.......+|++||.+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 799999998774 445678899988655556789998875
No 232
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.15 E-value=3.1e-09 Score=98.62 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=131.5
Q ss_pred CcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH-HHH-
Q psy879 10 SDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI-KMF- 85 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~- 85 (317)
..++|.......+...+.. +...++++.|++||||+++++++...- .....+++.++|... ..+.+...+ +..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~-~~~~~~~~lfg~~~ 210 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI-PKDLIESELFGHEK 210 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC-CHHHHHHHhcCCCC
Confidence 4567765544444333321 222358999999999999999998863 223456777877643 223332222 100
Q ss_pred ---H----hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------CcCc
Q psy879 86 ---A----QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EKII 140 (317)
Q Consensus 86 ---~----~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~l~ 140 (317)
. .....+..+....++|||++.|..+.|..|++++++.. .++++|++++.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 211 GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 0 00000112346789999999999999999999998532 245788888764 2456
Q ss_pred hhHhhhcce--eeecCCC--HHHHHHHHHHH----HHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh--CCC
Q psy879 141 EPIQSRCAM--LRYNKLT--DAQLLSKVIEI----CEKEN---ISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN--GFG 206 (317)
Q Consensus 141 ~~i~sR~~~--i~f~~~~--~~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~--~~~ 206 (317)
+.+..|+.. ++.||+. .+++..++... +...+ ..++++++..+... ..||+|+.-+.++.++. ...
T Consensus 291 ~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGD 370 (463)
T ss_pred HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 688888764 7788887 45666655543 33333 46889999988876 58999999999988665 345
Q ss_pred cccHHHHH
Q psy879 207 HVTAEYVF 214 (317)
Q Consensus 207 ~i~~~~v~ 214 (317)
.|+.+++.
T Consensus 371 ~i~~~~l~ 378 (463)
T TIGR01818 371 EVLVSDLP 378 (463)
T ss_pred cccHHhch
Confidence 67777654
No 233
>PRK15115 response regulator GlrR; Provisional
Probab=99.14 E-value=4e-09 Score=97.29 Aligned_cols=181 Identities=15% Similarity=0.219 Sum_probs=117.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh---------cccCCCCceeEEEE
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ---------KVTLPPGRHKIVIL 102 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~vlii 102 (317)
++++++|++|+||+++|+.+.+.- ...+.+++.++|... ....+...+...... ...+.....++++|
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s--~r~~~~f~~i~c~~~-~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNAS--PRASKPFIAINCGAL-PEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhc--CCCCCCeEEEeCCCC-CHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEE
Confidence 359999999999999999998863 223456788887643 222222211100000 00111245679999
Q ss_pred eCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------CcCchhHhhhcce--eeecCCCH--HHH
Q psy879 103 DEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EKIIEPIQSRCAM--LRYNKLTD--AQL 160 (317)
Q Consensus 103 DE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~l~~~i~sR~~~--i~f~~~~~--~~~ 160 (317)
||++.|....|..|++++++.. .++++|++|+.. ..+.+.+..|+.. +..||+.+ +++
T Consensus 235 ~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi 314 (444)
T PRK15115 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDI 314 (444)
T ss_pred EccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccH
Confidence 9999999999999999998532 245788887753 1344555556554 56666654 344
Q ss_pred HHHHH----HHHHHcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHhhh--CCCcccHHHHHh
Q psy879 161 LSKVI----EICEKEN---ISHTNDGLEAIVFTA-QGDMRQALNNLQSTHN--GFGHVTAEYVFK 215 (317)
Q Consensus 161 ~~~l~----~~~~~~~---~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~--~~~~i~~~~v~~ 215 (317)
..++. ..+...+ ..+++++++.+.... .||+|+..+.++.++. ....|+.+++..
T Consensus 315 ~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~~l~~ 379 (444)
T PRK15115 315 PLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQ 379 (444)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCccChhhhhh
Confidence 43333 3333333 247999999998886 9999999999998654 445677776643
No 234
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.13 E-value=2.9e-09 Score=98.65 Aligned_cols=203 Identities=15% Similarity=0.127 Sum_probs=126.5
Q ss_pred CCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH-HHH
Q psy879 9 FSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI-KMF 85 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 85 (317)
+..++|.......+...+.. ....+++++|++|+||+++|+++.... .....+++.++|... ....+...+ +..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s--~~~~~~~~~i~c~~~-~~~~~~~~lfg~~ 218 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS--RRAKGPFIKVNCAAL-PESLLESELFGHE 218 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC--CCCCCCeEEEECCCC-CHHHHHHHhcCCC
Confidence 34566665444443333321 122369999999999999999998753 223456777777643 222222211 100
Q ss_pred H----h----hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------CcC
Q psy879 86 A----Q----QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EKI 139 (317)
Q Consensus 86 ~----~----~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~l 139 (317)
. . ....+......+++|||++.|....|..|++++++.. .++++|++++.. ..+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 0 0 0001112456899999999999999999999998531 346788888764 245
Q ss_pred chhHhhhcce--eeecCCCH--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh--CC
Q psy879 140 IEPIQSRCAM--LRYNKLTD--AQLLSK----VIEICEKEN---ISHTNDGLEAIVFT-AQGDMRQALNNLQSTHN--GF 205 (317)
Q Consensus 140 ~~~i~sR~~~--i~f~~~~~--~~~~~~----l~~~~~~~~---~~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~--~~ 205 (317)
.+.+-.|+.. +..+|+.+ +++..+ +.+.....+ ..+++++++.+... ..||+|+..+.++.++. ..
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 5666666655 56666653 344433 333333222 35889999888876 58999999999987664 34
Q ss_pred CcccHHHHH
Q psy879 206 GHVTAEYVF 214 (317)
Q Consensus 206 ~~i~~~~v~ 214 (317)
..|+.+++.
T Consensus 379 ~~i~~~~l~ 387 (457)
T PRK11361 379 PIIFSEDLP 387 (457)
T ss_pred CcccHHHCh
Confidence 467776654
No 235
>KOG2170|consensus
Probab=99.12 E-value=2.1e-09 Score=89.81 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=82.1
Q ss_pred ccCCHHHHHH----HHHHHhcCCC--ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEE-----ecCCCCcChHHHH
Q psy879 12 IVGNEDTVER----LKVFSSSGNV--PN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLE-----LNASNDRGIDTVR 79 (317)
Q Consensus 12 ~~g~~~~~~~----l~~~l~~~~~--~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~-----~~~~~~~~~~~i~ 79 (317)
+.||.-+++. ++.++.++.+ |- +-|+|++||||+.+++.+|+.++......+++. .+......++..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 4577655554 5555555553 22 789999999999999999999875543333321 1112223344444
Q ss_pred HHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-------CCceEEEEecCCC
Q psy879 80 NKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-------NTTRFALACNNSE 137 (317)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-------~~~~~il~~~~~~ 137 (317)
..+......... .....++|+||+|+|.+...++|..+++.++ .+++||+.+|...
T Consensus 164 ~eL~~~v~~~v~--~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 164 EELKNRVRGTVQ--ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHH--hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 444433332221 2578899999999999999999999998543 4677999988653
No 236
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.5e-11 Score=104.28 Aligned_cols=112 Identities=23% Similarity=0.375 Sum_probs=71.8
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEec------CCCCc--------
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN------ASNDR-------- 73 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~------~~~~~-------- 73 (317)
.|.|++||++.++.+.-+...|+ |++|+||||||||.+++.+...| .+-.....++.+ .....
T Consensus 177 D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL-Ppls~~E~lE~s~I~s~~g~~~~~~~~~~~r 253 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL-PPLSIPEALEVSAIHSLAGDLHEGCPLKIHR 253 (490)
T ss_pred chhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC-CCCChHHHHHHHHHhhhcccccccCccceeC
Confidence 68999999999999999998887 89999999999999999998765 221111111111 00000
Q ss_pred -----C-hHHHHHHHHHHH-hhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh
Q psy879 74 -----G-IDTVRNKIKMFA-QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI 122 (317)
Q Consensus 74 -----~-~~~i~~~~~~~~-~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~ 122 (317)
. .......++... -.+.....+.+.|+|+||...+.....++|..=||+
T Consensus 254 PFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~ 309 (490)
T COG0606 254 PFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLEN 309 (490)
T ss_pred CccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCcccc
Confidence 0 000011111110 000011124688999999999999888888888883
No 237
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.12 E-value=2e-08 Score=85.92 Aligned_cols=204 Identities=18% Similarity=0.147 Sum_probs=133.9
Q ss_pred CCcccCCHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHH
Q psy879 9 FSDIVGNEDTVERLKVFSSSGN--VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA 86 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 86 (317)
|+.+++.....+.+....++-. -..+||.|+.||||..+|++.-.. .+....+++-+||........-.+.++...
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~--S~R~~~pFlalNCA~lPe~~aEsElFG~ap 280 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLA--SPRHSKPFLALNCASLPEDAAESELFGHAP 280 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhc--CcccCCCeeEeecCCCchhHhHHHHhcCCC
Confidence 7888887766666554443322 124999999999999999987754 455677889999875332222222333222
Q ss_pred h---hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-----------ccCCceEEEEecCC-------CcCchhHhh
Q psy879 87 Q---QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI-----------YSNTTRFALACNNS-------EKIIEPIQS 145 (317)
Q Consensus 87 ~---~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~-----------~~~~~~~il~~~~~-------~~l~~~i~s 145 (317)
. ....+-.+....|++||+.-|++..|..|++++.. ..-++++|++|..+ .++-..+--
T Consensus 281 g~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy 360 (511)
T COG3283 281 GDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFY 360 (511)
T ss_pred CCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHH
Confidence 1 01111224678999999999999999999999973 23467788888765 245566667
Q ss_pred hcce--eeecCCCH--HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh--CCCcccHH
Q psy879 146 RCAM--LRYNKLTD--AQ----LLSKVIEICEKENI---SHTNDGLEAIVFT-AQGDMRQALNNLQSTHN--GFGHVTAE 211 (317)
Q Consensus 146 R~~~--i~f~~~~~--~~----~~~~l~~~~~~~~~---~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~--~~~~i~~~ 211 (317)
|..+ ++.||+-+ ++ ..-++.+.+.+.|+ +++++.+.++.+. ..|++|+.-|.+-.++. ....++.+
T Consensus 361 RLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~~l~i~ 440 (511)
T COG3283 361 RLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGYELRIE 440 (511)
T ss_pred HhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhccCccchh
Confidence 7766 55555533 12 23345566666565 4567777777654 68999999999976654 45556666
Q ss_pred HHH
Q psy879 212 YVF 214 (317)
Q Consensus 212 ~v~ 214 (317)
++.
T Consensus 441 ~i~ 443 (511)
T COG3283 441 DIL 443 (511)
T ss_pred hcc
Confidence 553
No 238
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.09 E-value=1e-09 Score=105.42 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=90.7
Q ss_pred cccCCHHHHHHHHHHHhcCC---------------------CceEEEECCCCCCHHHHHHHHHHHHcCCC--CCCceEEe
Q psy879 11 DIVGNEDTVERLKVFSSSGN---------------------VPNIIISGPPGVGKTTTILCLARILLGPS--FKDAVLEL 67 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~---------------------~~~~ll~G~~G~GKt~la~~la~~l~~~~--~~~~~~~~ 67 (317)
.+.|++.+++.+.-.+-+|. -.|+||.|+||||||++++++++.-.... .+..+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 57799999888765554432 12799999999999999999998531100 00111111
Q ss_pred cCCCCcChHHHHHH-HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEe
Q psy879 68 NASNDRGIDTVRNK-IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALAC 133 (317)
Q Consensus 68 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~ 133 (317)
++... ....+. -+.+...+..+..+...+++|||++.|....|.+|++.||+. +..+.+|.++
T Consensus 531 gLTa~---~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAa 607 (915)
T PTZ00111 531 GLTAS---IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASC 607 (915)
T ss_pred cccch---hhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEc
Confidence 11110 000000 011111111222356789999999999999999999999853 2467788888
Q ss_pred cCCC-------------cCchhHhhhcce--eeecCCCHH
Q psy879 134 NNSE-------------KIIEPIQSRCAM--LRYNKLTDA 158 (317)
Q Consensus 134 ~~~~-------------~l~~~i~sR~~~--i~f~~~~~~ 158 (317)
|+.. .+++++.|||.. +-...++++
T Consensus 608 NP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 608 NPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred CCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChH
Confidence 8742 478999999966 444555544
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.09 E-value=1.1e-09 Score=91.62 Aligned_cols=146 Identities=14% Similarity=0.237 Sum_probs=86.9
Q ss_pred cccCCCCCCcccC----CHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh
Q psy879 2 EKYRPQTFSDIVG----NEDTVERLKVFSSSG--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI 75 (317)
Q Consensus 2 ~ky~P~~~~~~~g----~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 75 (317)
+.|++.+|+.+.. +..++..+..++++- ...+++|+|++|+|||+++.+++..+.... ..+..+...+. .
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it~~~l--~ 139 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIITVADI--M 139 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEHHHH--H
Confidence 4677888998863 344666666666532 223699999999999999999999985433 22333322110 0
Q ss_pred HHHHHHH-------HHHHhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCceEEEEecCCC-----cCc
Q psy879 76 DTVRNKI-------KMFAQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIY-SNTTRFALACNNSE-----KII 140 (317)
Q Consensus 76 ~~i~~~~-------~~~~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~-~~~~~~il~~~~~~-----~l~ 140 (317)
..++... ..+... .....+|||||++.... -....|..+++.. .....+|++||... .+.
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~-----l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLND-----LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred HHHHHHHhhccccHHHHHHH-----hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 1111100 000000 13567999999987643 3455677788753 34567888888653 344
Q ss_pred hhHhhhcc-----eeeecCCC
Q psy879 141 EPIQSRCA-----MLRYNKLT 156 (317)
Q Consensus 141 ~~i~sR~~-----~i~f~~~~ 156 (317)
+.+.||+. .+.|.-.|
T Consensus 215 ~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 215 ERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hHHHHHHHHCCceEEEeeCCc
Confidence 55666653 36666443
No 240
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.7e-09 Score=90.89 Aligned_cols=105 Identities=29% Similarity=0.387 Sum_probs=67.1
Q ss_pred cccCCHHHHHHHHHHH-------hc----C----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----
Q psy879 11 DIVGNEDTVERLKVFS-------SS----G----NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN---- 71 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l-------~~----~----~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~---- 71 (317)
.++||+.+++.|.-++ .. . .-+|+|+.||.|||||.+|+.+|+.|. .++---++..
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln-----VPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN-----VPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC-----CCeeeccccchhhc
Confidence 4678888877653322 11 1 114699999999999999999999973 2233222221
Q ss_pred -CcChHHHHHHHHHHHhhcc-cCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhh
Q psy879 72 -DRGIDTVRNKIKMFAQQKV-TLPPGRHKIVILDEADSMTDG--------------AQQALRRTME 121 (317)
Q Consensus 72 -~~~~~~i~~~~~~~~~~~~-~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le 121 (317)
..+ +++.+.+-...+..- ....+.+.+++|||+|++.+. .|.+|++++|
T Consensus 137 GYVG-EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 137 GYVG-EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred cccc-hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHc
Confidence 112 334454444444321 112257899999999988542 5999999999
No 241
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.08 E-value=6e-09 Score=91.41 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=107.6
Q ss_pred CCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC----------CCc---------------
Q psy879 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF----------KDA--------------- 63 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~----------~~~--------------- 63 (317)
|.-++||+.....|....-.......||.|+.|+||||++++++..|-.... ..+
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~ 95 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELE 95 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccc
Confidence 6778999999888665555566667999999999999999999998732110 000
Q ss_pred ----------eEEecCCC----CcChHHHHHHHH--HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-----
Q psy879 64 ----------VLELNASN----DRGIDTVRNKIK--MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI----- 122 (317)
Q Consensus 64 ----------~~~~~~~~----~~~~~~i~~~~~--~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~----- 122 (317)
++...... ..+.-++...+. .-..++..+..+.+.|++|||+..|....+++||..+++
T Consensus 96 ~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~v 175 (423)
T COG1239 96 WLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDV 175 (423)
T ss_pred cccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCcee
Confidence 11100000 011111111111 111233345557899999999999999999999999985
Q ss_pred --------ccCCceEEEEecCCC-cCchhHhhhcce-eeecCCC-HHHHHHHHHHHHHH
Q psy879 123 --------YSNTTRFALACNNSE-KIIEPIQSRCAM-LRYNKLT-DAQLLSKVIEICEK 170 (317)
Q Consensus 123 --------~~~~~~~il~~~~~~-~l~~~i~sR~~~-i~f~~~~-~~~~~~~l~~~~~~ 170 (317)
+|.++.+|.++|+.. .+-+.|+.||.. +...++. .++...++.+....
T Consensus 176 ereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 176 EREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 355666777787764 799999999776 7777665 55666666666544
No 242
>PRK08116 hypothetical protein; Validated
Probab=99.06 E-value=7.6e-10 Score=94.42 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=86.7
Q ss_pred cCCCCCCcccC---CHHHHHHHHHHHhc----CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh
Q psy879 4 YRPQTFSDIVG---NEDTVERLKVFSSS----GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI 75 (317)
Q Consensus 4 y~P~~~~~~~g---~~~~~~~l~~~l~~----~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 75 (317)
|+-.+|+.+.. +..+......++++ ... ..++|+|++|+|||+++.++++.+... +..++.++.... .
T Consensus 79 ~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~~l--l 154 (268)
T PRK08116 79 FRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQL--L 154 (268)
T ss_pred HHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHH--H
Confidence 44456776653 23344444444432 111 249999999999999999999998644 233444432110 1
Q ss_pred HHHHHHHH--------HHHhhcccCCCCceeEEEEeCC--CCCCHHHHHHHHHHhhhc-cCCceEEEEecCCC-----cC
Q psy879 76 DTVRNKIK--------MFAQQKVTLPPGRHKIVILDEA--DSMTDGAQQALRRTMEIY-SNTTRFALACNNSE-----KI 139 (317)
Q Consensus 76 ~~i~~~~~--------~~~~~~~~~~~~~~~vliiDE~--d~l~~~~~~~ll~~le~~-~~~~~~il~~~~~~-----~l 139 (317)
..+...+. .+... .....+|||||+ +..+...+..|..+++.. .....+|++||... .+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~-----l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~ 229 (268)
T PRK08116 155 NRIKSTYKSSGKEDENEIIRS-----LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQY 229 (268)
T ss_pred HHHHHHHhccccccHHHHHHH-----hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 11111100 00000 134569999999 556777888899988853 34566888888753 24
Q ss_pred chhHhhh----cceeeecCCCH
Q psy879 140 IEPIQSR----CAMLRYNKLTD 157 (317)
Q Consensus 140 ~~~i~sR----~~~i~f~~~~~ 157 (317)
.+.+.|| |..+.|..++.
T Consensus 230 ~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 230 GKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred hHHHHHHHHHcCEEEEeeCcCh
Confidence 5677788 66688877664
No 243
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=99.06 E-value=5.7e-09 Score=73.68 Aligned_cols=87 Identities=31% Similarity=0.618 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHH
Q psy879 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQL 299 (317)
Q Consensus 220 ~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l 299 (317)
+.++.+.++++.+.++++.+++..+++++..|+++.+|+..+++.+....+++..+.+++.+++++|+++..|.++.+++
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl 82 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEILQL 82 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHHH
Confidence 45667889999999999999999999999899999999999999887778889999999999999999999999999999
Q ss_pred HHHHHHH
Q psy879 300 SGLLARL 306 (317)
Q Consensus 300 e~~~~~~ 306 (317)
+.|++++
T Consensus 83 ~alva~~ 89 (89)
T PF08542_consen 83 EALVAAF 89 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999875
No 244
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.06 E-value=1.7e-09 Score=83.05 Aligned_cols=122 Identities=16% Similarity=0.266 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHH----HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhc
Q psy879 14 GNEDTVERLKVF----SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQK 89 (317)
Q Consensus 14 g~~~~~~~l~~~----l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 89 (317)
|.....+.+... ..... +++|+|++||||+++|+++...- ......++..++.. .. .+.+..
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~--pvli~GE~GtGK~~~A~~lh~~~--~~~~~~~~~~~~~~-~~----~~~l~~----- 67 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSS--PVLITGEPGTGKSLLARALHRYS--GRANGPFIVIDCAS-LP----AELLEQ----- 67 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS---EEEECCTTSSHHHHHHCCHHTT--TTCCS-CCCCCHHC-TC----HHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHhCCCC--cEEEEcCCCCCHHHHHHHHHhhc--CccCCCeEEechhh-Cc----HHHHHH-----
Confidence 444444444443 33333 69999999999999999999863 22223333333322 11 112221
Q ss_pred ccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-cCCceEEEEecCCC-------cCchhHhhhcce--eeecC
Q psy879 90 VTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-SNTTRFALACNNSE-------KIIEPIQSRCAM--LRYNK 154 (317)
Q Consensus 90 ~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-~~~~~~il~~~~~~-------~l~~~i~sR~~~--i~f~~ 154 (317)
.....++|+|+|.+..+.|..|..+++.. ..++++|+++..+- .+.+.+-.|+.. +.+||
T Consensus 68 -----a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 68 -----AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp -----CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred -----cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 25678999999999999999999999864 56788999887642 355667666655 44443
No 245
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.04 E-value=8e-09 Score=89.61 Aligned_cols=175 Identities=17% Similarity=0.258 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHc-CCCCCCceEEecCCCCcChHH-HHHHHHHHHhhccc
Q psy879 16 EDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILL-GPSFKDAVLELNASNDRGIDT-VRNKIKMFAQQKVT 91 (317)
Q Consensus 16 ~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~ 91 (317)
+..++.+...+.. .....+.++|++|+|||++|..+++... ...+. .++.++......... .......+......
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-cccccccccccccccccccccccccccccc
Confidence 5567777777776 3444599999999999999999997732 22232 223333222222222 22222222211000
Q ss_pred C----------------CCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCC
Q psy879 92 L----------------PPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155 (317)
Q Consensus 92 ~----------------~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~ 155 (317)
. ....+.++|+|+++... ....+...+-..+.++.+|+||... .+..........++..++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS-
T ss_pred cccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 0 01347899999987654 3333444444444567788887663 333333333667999999
Q ss_pred CHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCCHHHH
Q psy879 156 TDAQLLSKVIEICEKEN---ISHTNDGLEAIVFTAQGDMRQA 194 (317)
Q Consensus 156 ~~~~~~~~l~~~~~~~~---~~i~~~~~~~l~~~~~gd~r~~ 194 (317)
++++..+.+...+.... -.-.++....+++.++|.+-.+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999875443 1122456788999999866543
No 246
>KOG0741|consensus
Probab=99.03 E-value=6.8e-10 Score=99.08 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=92.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceE-E-ecCCCCcChHHHHHHHHHHHhhcc-cCCCCceeEEEEeCCCCCCH
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVL-E-LNASNDRGIDTVRNKIKMFAQQKV-TLPPGRHKIVILDEADSMTD 110 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~-~-~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~vliiDE~d~l~~ 110 (317)
+|+|||||||||.+||.+-+-|+...+...-- + ++..-..+...+|+.+........ ...++.-.++|+||+|...+
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK 338 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK 338 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH
Confidence 89999999999999999999987655432100 0 111112334567777766554432 22346678999999997643
Q ss_pred -------------HHHHHHHHHhhh--ccCCceEEEEecCCCcCchhHhhhcc--e-eeecCCCHHHHHHHHHH
Q psy879 111 -------------GAQQALRRTMEI--YSNTTRFALACNNSEKIIEPIQSRCA--M-LRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 111 -------------~~~~~ll~~le~--~~~~~~~il~~~~~~~l~~~i~sR~~--~-i~f~~~~~~~~~~~l~~ 166 (317)
...|.|+.-|+. --.++.+|..||+.+-+++++.+-.. + +++.-|++.-..+++.-
T Consensus 339 qRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~I 412 (744)
T KOG0741|consen 339 QRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKI 412 (744)
T ss_pred hcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEh
Confidence 357888888773 33578889999999999999976544 4 78888888766665543
No 247
>KOG0745|consensus
Probab=99.03 E-value=1.1e-08 Score=89.51 Aligned_cols=121 Identities=27% Similarity=0.346 Sum_probs=73.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc--C--hHHHHHHHHHHHhhccc-CCCCceeEEEEeCCC
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR--G--IDTVRNKIKMFAQQKVT-LPPGRHKIVILDEAD 106 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--~--~~~i~~~~~~~~~~~~~-~~~~~~~vliiDE~d 106 (317)
.|+|+.||+|+|||.+++.+|+.+ +.++...+|.... + -+++...+..+.+.+.. ...+...||+|||+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvD 301 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVD 301 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhh
Confidence 369999999999999999999987 3445545543311 1 12233334333332210 112467899999999
Q ss_pred CCCH--------------HHHHHHHHHhhhc-------------cC------CceEEEEecC-CCcCchhHhhhcce--e
Q psy879 107 SMTD--------------GAQQALRRTMEIY-------------SN------TTRFALACNN-SEKIIEPIQSRCAM--L 150 (317)
Q Consensus 107 ~l~~--------------~~~~~ll~~le~~-------------~~------~~~~il~~~~-~~~l~~~i~sR~~~--i 150 (317)
++.. ..|.+||+++|.. .. ++-|+|++.. ...+.+.+..|... +
T Consensus 302 Ki~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~sl 381 (564)
T KOG0745|consen 302 KITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSL 381 (564)
T ss_pred hhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhc
Confidence 9873 2599999999821 11 1113333333 23566777777655 6
Q ss_pred eecCCCH
Q psy879 151 RYNKLTD 157 (317)
Q Consensus 151 ~f~~~~~ 157 (317)
-|..++.
T Consensus 382 GFg~~s~ 388 (564)
T KOG0745|consen 382 GFGAPSS 388 (564)
T ss_pred ccCCCCC
Confidence 6666655
No 248
>PRK06526 transposase; Provisional
Probab=99.02 E-value=5.5e-10 Score=94.33 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=61.7
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh----cccCCCCceeEE
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ----KVTLPPGRHKIV 100 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~vl 100 (317)
+++.+. +++|+||||+|||+++.+++..+...+... ..... ..+.+.+...... ..........++
T Consensus 94 fi~~~~--nlll~Gp~GtGKThLa~al~~~a~~~g~~v--~f~t~------~~l~~~l~~~~~~~~~~~~l~~l~~~dlL 163 (254)
T PRK06526 94 FVTGKE--NVVFLGPPGTGKTHLAIGLGIRACQAGHRV--LFATA------AQWVARLAAAHHAGRLQAELVKLGRYPLL 163 (254)
T ss_pred hhhcCc--eEEEEeCCCCchHHHHHHHHHHHHHCCCch--hhhhH------HHHHHHHHHHHhcCcHHHHHHHhccCCEE
Confidence 454443 799999999999999999998874333222 21111 1111111100000 000001356799
Q ss_pred EEeCCCCC--CHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 101 ILDEADSM--TDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 101 iiDE~d~l--~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
||||++.. .+..++.|..+++.......+|++||.+
T Consensus 164 IIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 164 IVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred EEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 99999977 4667778888887644455688888876
No 249
>KOG1051|consensus
Probab=99.01 E-value=3.1e-09 Score=102.06 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=85.8
Q ss_pred CcccCCHHHHHHHHHHHhcC-----C--Cce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC---------C--
Q psy879 10 SDIVGNEDTVERLKVFSSSG-----N--VPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA---------S-- 70 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~-----~--~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~---------~-- 70 (317)
+.++||++++..+..++..- + +.. ++|.||.|+|||-+|+++|..+.+.......+++.. +
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~ 641 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPP 641 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCc
Confidence 35789999999998887632 2 223 999999999999999999999976654444443332 0
Q ss_pred CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCCC
Q psy879 71 NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNSE 137 (317)
Q Consensus 71 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~~ 137 (317)
...+....-...+.+. ..++.||++||+|+..++.++.|++.+++. -.+++||+|+|...
T Consensus 642 gyvG~e~gg~Lteavr-------rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 642 GYVGKEEGGQLTEAVK-------RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred ccccchhHHHHHHHHh-------cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccch
Confidence 1122222222222221 246899999999999999999999999954 25788999988643
No 250
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=9.8e-09 Score=78.70 Aligned_cols=95 Identities=31% Similarity=0.387 Sum_probs=59.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc--------------------ChHHHHHHHHHHHhhccc
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR--------------------GIDTVRNKIKMFAQQKVT 91 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~~~~ 91 (317)
.+++|+||||+|||++++.++..+.... ..++.+++.... .....+..+.... .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR-K--- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH-h---
Confidence 3699999999999999999999875432 234444443211 1111221122111 1
Q ss_pred CCCCceeEEEEeCCCCCCHHHHHHHHH--------HhhhccCCceEEEEecC
Q psy879 92 LPPGRHKIVILDEADSMTDGAQQALRR--------TMEIYSNTTRFALACNN 135 (317)
Q Consensus 92 ~~~~~~~vliiDE~d~l~~~~~~~ll~--------~le~~~~~~~~il~~~~ 135 (317)
..+.++++||++.+.......... ..........+|+++|.
T Consensus 77 ---~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 ---LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ---cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 125899999999998776555433 23344566778888885
No 251
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.99 E-value=3.2e-08 Score=91.28 Aligned_cols=179 Identities=12% Similarity=0.156 Sum_probs=118.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh---------cccCCCCceeEEEEe
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ---------KVTLPPGRHKIVILD 103 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~vliiD 103 (317)
.++++|++|+||+++++++...- .....+++.++|... ....+...+...... ...+....+++++||
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s--~~~~~~~i~~~c~~~-~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASS--ARSEKPLVTLNCAAL-NESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcC--CCCCCCeeeeeCCCC-CHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 58999999999999999998763 334456888888643 223333222110000 001122457899999
Q ss_pred CCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCCC-------cCchhHhhhcce--eeecCCCH--HHHH
Q psy879 104 EADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNSE-------KIIEPIQSRCAM--LRYNKLTD--AQLL 161 (317)
Q Consensus 104 E~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~~-------~l~~~i~sR~~~--i~f~~~~~--~~~~ 161 (317)
|++.|....|..|++++++.. .++++|++|+... .+.+.+..|+.. +..||+.+ +++.
T Consensus 241 ei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~ 320 (441)
T PRK10365 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIP 320 (441)
T ss_pred ccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHH
Confidence 999999999999999998532 2456787776642 455666666655 55566653 2444
Q ss_pred HHHHHH----HHHcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHhhh--CCCcccHHHHH
Q psy879 162 SKVIEI----CEKEN---ISHTNDGLEAIVFTA-QGDMRQALNNLQSTHN--GFGHVTAEYVF 214 (317)
Q Consensus 162 ~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~--~~~~i~~~~v~ 214 (317)
.+.... +...+ ..++++++..+.... .||+|++.+.++.++. ....|+.+++.
T Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~i~~~~l~ 383 (441)
T PRK10365 321 LLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELP 383 (441)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCccchHhCc
Confidence 433333 33223 358899999988875 9999999999998654 44567777664
No 252
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.96 E-value=7.4e-08 Score=79.08 Aligned_cols=195 Identities=20% Similarity=0.201 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH-HHHHHhhcc---
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK-IKMFAQQKV--- 90 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~--- 90 (317)
+.+.+..+...+..|. ..+.++|+.|+|||.+.+++...+.+.. ...+.+.... .+...+.+. +..+...+.
T Consensus 36 h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d~--~~~v~i~~~~-~s~~~~~~ai~~~l~~~p~~~~ 111 (269)
T COG3267 36 HNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNEDQ--VAVVVIDKPT-LSDATLLEAIVADLESQPKVNV 111 (269)
T ss_pred hhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCCc--eEEEEecCcc-hhHHHHHHHHHHHhccCccchh
Confidence 4566677777777666 1389999999999999997777764332 2222333221 111111111 110000000
Q ss_pred -------------cCCCC-ceeEEEEeCCCCCCHHHHHHHHHHhh---hccCCceEEEEecCCC------cCchhHhhhc
Q psy879 91 -------------TLPPG-RHKIVILDEADSMTDGAQQALRRTME---IYSNTTRFALACNNSE------KIIEPIQSRC 147 (317)
Q Consensus 91 -------------~~~~~-~~~vliiDE~d~l~~~~~~~ll~~le---~~~~~~~~il~~~~~~------~l~~~i~sR~ 147 (317)
....+ .+-++++||++.+..+...+|..+.+ +......++++..+.- .....+..|+
T Consensus 112 ~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~ 191 (269)
T COG3267 112 NAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI 191 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE
Confidence 00012 34789999999999999888877765 3444455777765532 1246677889
Q ss_pred ce-eeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHHHHHHhh-----hCCCcccHHHH
Q psy879 148 AM-LRYNKLTDAQLLSKVIEICEKENIS---HTNDGLEAIVFTAQGDMRQALNNLQSTH-----NGFGHVTAEYV 213 (317)
Q Consensus 148 ~~-i~f~~~~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~~~gd~r~~i~~l~~~~-----~~~~~i~~~~v 213 (317)
.. +..+|++.++...+|..+++..+.. ++++++..+...+.|-+|..-+.+..+. .+...|+...+
T Consensus 192 ~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 192 DIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred EEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 88 9999999999999999998875542 4788899999999997775555543321 24455555443
No 253
>PF13173 AAA_14: AAA domain
Probab=98.96 E-value=8.1e-09 Score=78.24 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=77.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH-HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV-RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 111 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 111 (317)
.++++||.|+||||+++.+++.+. ....++.++..+....... .+....+... ...+..+++|||++.+. +
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~iDEiq~~~-~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLEL----IKPGKKYIFIDEIQYLP-D 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHh----hccCCcEEEEehhhhhc-c
Confidence 589999999999999999998875 1223444554332111100 0011222221 11267899999999985 4
Q ss_pred HHHHHHHHhhhccCCceEEEEecCCC----cCchhHhhhcceeeecCCCHHHH
Q psy879 112 AQQALRRTMEIYSNTTRFALACNNSE----KIIEPIQSRCAMLRYNKLTDAQL 160 (317)
Q Consensus 112 ~~~~ll~~le~~~~~~~~il~~~~~~----~l~~~i~sR~~~i~f~~~~~~~~ 160 (317)
....+..+.+.. ++..+|+++.... .....+..|...+++.|++-.|.
T Consensus 76 ~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 WEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 555565666654 5677888877643 34567788888899999998764
No 254
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.96 E-value=3.2e-09 Score=99.63 Aligned_cols=137 Identities=21% Similarity=0.312 Sum_probs=92.3
Q ss_pred CcccCCHHHHHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH-
Q psy879 10 SDIVGNEDTVERLKVFSSSGNV------------PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID- 76 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~- 76 (317)
-.+.|++.+++.+.-.+-+|.. -|+|+.|.||+|||.+.+.+++.. +...+.....++..+..
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a----Pr~vytsgkgss~~GLTA 361 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA----PRGVYTSGKGSSAAGLTA 361 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC----CceEEEccccccccCcee
Confidence 3578999999887666544321 279999999999999999999874 22233333333333321
Q ss_pred -HHHHHH-HHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC----
Q psy879 77 -TVRNKI-KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE---- 137 (317)
Q Consensus 77 -~i~~~~-~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~---- 137 (317)
.+++.. +.|...+..+..++++|++|||+|+|.....++++..||.. +..+.++.++|+..
T Consensus 362 av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd 441 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYD 441 (682)
T ss_pred EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCC
Confidence 112211 22222332233368899999999999999999999999943 23445677777653
Q ss_pred ---------cCchhHhhhccee
Q psy879 138 ---------KIIEPIQSRCAML 150 (317)
Q Consensus 138 ---------~l~~~i~sR~~~i 150 (317)
.+++++.|||..+
T Consensus 442 ~~~~~~enI~l~~~lLSRFDLi 463 (682)
T COG1241 442 PKKTVAENINLPAPLLSRFDLI 463 (682)
T ss_pred CCCCHHHhcCCChhHHhhCCee
Confidence 4789999999883
No 255
>KOG0478|consensus
Probab=98.95 E-value=1.5e-08 Score=93.08 Aligned_cols=144 Identities=22% Similarity=0.285 Sum_probs=90.4
Q ss_pred cccCCHHHHHHHHHHHhcCC---------C---ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 11 DIVGNEDTVERLKVFSSSGN---------V---PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~---------~---~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
.++|++++++-+.-.+-+|. + -|+|++|.||+|||.+.+.+.+.+ ..+ .+.....+...+....
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~-pRg---~yTSGkGsSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLL-PRG---VYTSGKGSSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhC-Ccc---eeecCCccchhcceee
Confidence 46678888777655554332 2 269999999999999999999975 211 1221111111111000
Q ss_pred --HH-HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-------------ccCCceEEEEecCCC-----
Q psy879 79 --RN-KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI-------------YSNTTRFALACNNSE----- 137 (317)
Q Consensus 79 --~~-~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~-------------~~~~~~~il~~~~~~----- 137 (317)
++ .-+.+......+.-++..+.+|||+|+|....++.|++.||. .+..+.++.++|+..
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp 585 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNP 585 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCC
Confidence 00 000111111122236889999999999999999999999993 245566788888532
Q ss_pred --------cCchhHhhhcce--eeecCCCHH
Q psy879 138 --------KIIEPIQSRCAM--LRYNKLTDA 158 (317)
Q Consensus 138 --------~l~~~i~sR~~~--i~f~~~~~~ 158 (317)
.+++++.|||.. +-+.++++.
T Consensus 586 ~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 586 NKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred CCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 478999999998 455666654
No 256
>KOG0482|consensus
Probab=98.95 E-value=3.7e-08 Score=87.74 Aligned_cols=265 Identities=18% Similarity=0.188 Sum_probs=145.6
Q ss_pred cccCCHHHHHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH-
Q psy879 11 DIVGNEDTVERLKVFSSSGNV------------PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT- 77 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~- 77 (317)
+++|++++++.|.-.+-+|.- -|+++.|.||+.||.+.+.+.+.- + ...+....+++..+...
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla--p--RgvYTTGrGSSGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA--P--RGVYTTGRGSSGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcC--c--ccceecCCCCCccccchh
Confidence 688999999998777654321 159999999999999999999863 2 11222333333333211
Q ss_pred -HHHHH-HHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC-----
Q psy879 78 -VRNKI-KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE----- 137 (317)
Q Consensus 78 -i~~~~-~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~----- 137 (317)
.++-+ +.+......+--++..|.+|||+|+|......++...||.- ...+.++.++|+..
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnp 498 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNP 498 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCc
Confidence 11100 00000000111257889999999999999999999999942 23344566666532
Q ss_pred --------cCchhHhhhcce-------------------------------eeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q psy879 138 --------KIIEPIQSRCAM-------------------------------LRYNKLTDAQLLSKVIEICEKENISHTND 178 (317)
Q Consensus 138 --------~l~~~i~sR~~~-------------------------------i~f~~~~~~~~~~~l~~~~~~~~~~i~~~ 178 (317)
.++.++.|||.. ..|.|++.+-++.++.. |+...--++++
T Consensus 499 rrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~-ak~~~P~vp~~ 577 (721)
T KOG0482|consen 499 RRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISL-AKRKNPVVPEA 577 (721)
T ss_pred ccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHH-HhhcCCCCCHH
Confidence 478999999833 45667777777777665 33333345666
Q ss_pred HHHHHHHh-------c-------CCCHHHHHHHHHHhhh-----CCCcccHHHHHhhcC---CCCHHHHHHHHHHHhcCC
Q psy879 179 GLEAIVFT-------A-------QGDMRQALNNLQSTHN-----GFGHVTAEYVFKVCD---EPHPLAVKEMLLNCVEGN 236 (317)
Q Consensus 179 ~~~~l~~~-------~-------~gd~r~~i~~l~~~~~-----~~~~i~~~~v~~~~~---~~~~~~i~~l~~~~~~~~ 236 (317)
..+++... + .-.+|..+.+++.... -...+..++|.+++. .+.+....+--..-....
T Consensus 578 l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~sL~~~~~~~~~~~~ 657 (721)
T KOG0482|consen 578 LADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSKDSLYQDDGQKEDTSA 657 (721)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhcccccccccccccch
Confidence 55555421 1 2467888877764322 123455555554321 111000000000000011
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q psy879 237 MKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQE 281 (317)
Q Consensus 237 ~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 281 (317)
.+.++.++.+|.. .|..+..+-..+.+.... |.++......++.
T Consensus 658 ~~~if~iirel~~e~g~~~v~~s~~~~r~~~k-Gfs~~ql~~~i~e 702 (721)
T KOG0482|consen 658 TDAIFAIIRELAGEGGKRCVKLSNAEQRCVRK-GFSEAQLKKCIDE 702 (721)
T ss_pred HHHHHHHHHHHHhhcCCceeeHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 4455666666654 445544454445454333 5666554444443
No 257
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.93 E-value=6.4e-08 Score=90.81 Aligned_cols=200 Identities=13% Similarity=0.133 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC--CC--CcChHHHHHHHHHHH--h
Q psy879 15 NEDTVERLKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA--SN--DRGIDTVRNKIKMFA--Q 87 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~--~~--~~~~~~i~~~~~~~~--~ 87 (317)
|++++..|.-..-.. .+..++|.|+.|+||+++++.++..+-. ..++..... +. ..+--++...+..-. .
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~ 84 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVA 84 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCC
Confidence 555655554443344 5567999999999999999999998632 122332222 11 122222222222111 2
Q ss_pred hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecC---CCcCchhHhhhcce-e
Q psy879 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNN---SEKIIEPIQSRCAM-L 150 (317)
Q Consensus 88 ~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~---~~~l~~~i~sR~~~-i 150 (317)
.+..+....+.|+++||+..+.+..+++|++.|++. |....+|.+-|. ...+.+++..||.. +
T Consensus 85 ~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v 164 (584)
T PRK13406 85 QRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHL 164 (584)
T ss_pred CCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEE
Confidence 233344467899999999999999999999999953 233333443222 13588999999988 8
Q ss_pred eecCCCHHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHhh-----hCCCcccHHHHH
Q psy879 151 RYNKLTDAQLL-------SKVIEICEKENISHTNDGLEAIVFTA---QG-DMRQALNNLQSTH-----NGFGHVTAEYVF 214 (317)
Q Consensus 151 ~f~~~~~~~~~-------~~l~~~~~~~~~~i~~~~~~~l~~~~---~g-d~r~~i~~l~~~~-----~~~~~i~~~~v~ 214 (317)
.+..++..+.. ++...+..-.++.++++.+.+++..+ +- +.|..+.+++.+. .+...|+.+||.
T Consensus 165 ~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 165 DLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred EcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 88877765432 23333333357889999988876543 32 6677777775422 267789999997
Q ss_pred hhc
Q psy879 215 KVC 217 (317)
Q Consensus 215 ~~~ 217 (317)
.+.
T Consensus 245 ~Aa 247 (584)
T PRK13406 245 LAA 247 (584)
T ss_pred HHH
Confidence 744
No 258
>PHA00729 NTP-binding motif containing protein
Probab=98.90 E-value=1.5e-08 Score=83.02 Aligned_cols=128 Identities=18% Similarity=0.103 Sum_probs=75.0
Q ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCC--CceEEecC---CCCcChHHHHHHHHHHHhhcccCCCC
Q psy879 21 RLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK--DAVLELNA---SNDRGIDTVRNKIKMFAQQKVTLPPG 95 (317)
Q Consensus 21 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~--~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~ 95 (317)
.+...+.++.+.+++|+|+||+|||++|.++++.+...-.. ........ .-....+.+.+.+....... .
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~-----~ 81 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDND-----Y 81 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcC-----C
Confidence 34445567777789999999999999999999986310000 00000000 01122333444443322221 2
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHH
Q psy879 96 RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~ 167 (317)
...++||||+........ . ..+ . ......+.++++||+..+.|.+++++++...|..+
T Consensus 82 ~~dlLIIDd~G~~~~~~~--w--h~~----~------~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 82 RIPLIIFDDAGIWLSKYV--W--YED----Y------MKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred CCCEEEEeCCchhhcccc--h--hhh----c------cchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 345899999754332100 0 000 0 01123577899999999999999999999988874
No 259
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.88 E-value=1.5e-09 Score=86.88 Aligned_cols=93 Identities=25% Similarity=0.368 Sum_probs=56.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC-------CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-------DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEA 105 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~ 105 (317)
+++|+||+|+|||++|.++++++...+.. +..++..+ ........+.+..+ ....++||||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~--v~f~~~~~L~~~l~~~~~~~~~~~~~~~l---------~~~dlLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYS--VLFITASDLLDELKQSRSDGSYEELLKRL---------KRVDLLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH---------HTSSCEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcc--eeEeecCceeccccccccccchhhhcCcc---------ccccEeccccc
Confidence 79999999999999999999988653332 33322110 00000111122222 24579999999
Q ss_pred CCC--CHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 106 DSM--TDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 106 d~l--~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
... +....+.|.++++..-.+...|++||..
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 875 4456677888887554445688888864
No 260
>PRK06921 hypothetical protein; Provisional
Probab=98.84 E-value=2.6e-08 Score=84.89 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=60.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCC---
Q psy879 31 VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADS--- 107 (317)
Q Consensus 31 ~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~--- 107 (317)
..+++|+||+|+|||+++.++++++.... +..++.+.... ....+...+..+...- .......+|||||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~~--l~~~l~~~~~~~~~~~--~~~~~~dlLiIDDl~~~~~ 191 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFVE--GFGDLKDDFDLLEAKL--NRMKKVEVLFIDDLFKPVN 191 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHHH--HHHHHHHHHHHHHHHH--HHhcCCCEEEEeccccccC
Confidence 34699999999999999999999985431 23344443221 1112222111111000 0013567999999943
Q ss_pred ----CCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 108 ----MTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 108 ----l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
.+.-.+..|..+++..- ....+|++||.+
T Consensus 192 g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 192 GKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44445667888887543 235578888864
No 261
>PRK09183 transposase/IS protein; Provisional
Probab=98.83 E-value=8.1e-09 Score=87.75 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=64.5
Q ss_pred HHHHHHHH--HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH-----HHHHHHhhc
Q psy879 17 DTVERLKV--FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN-----KIKMFAQQK 89 (317)
Q Consensus 17 ~~~~~l~~--~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~ 89 (317)
..+..|.. ++.+|. +++|+||||+|||+++.+++..+...+ ..+..++..... ..+.. .+....+..
T Consensus 88 ~~i~~L~~~~~i~~~~--~v~l~Gp~GtGKThLa~al~~~a~~~G--~~v~~~~~~~l~--~~l~~a~~~~~~~~~~~~~ 161 (259)
T PRK09183 88 KQLQSLRSLSFIERNE--NIVLLGPSGVGKTHLAIALGYEAVRAG--IKVRFTTAADLL--LQLSTAQRQGRYKTTLQRG 161 (259)
T ss_pred HHHHHHhcCCchhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeHHHHH--HHHHHHHHCCcHHHHHHHH
Confidence 34444432 355555 799999999999999999988753322 223333221100 00000 011111111
Q ss_pred ccCCCCceeEEEEeCCCCC--CHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 90 VTLPPGRHKIVILDEADSM--TDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 90 ~~~~~~~~~vliiDE~d~l--~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
.....++||||++.. .....+.|+.+++..-....+|+|+|.+
T Consensus 162 ----~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 162 ----VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred ----hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 134579999999974 5566778888887544445688888875
No 262
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.83 E-value=2.4e-08 Score=85.31 Aligned_cols=145 Identities=20% Similarity=0.284 Sum_probs=86.7
Q ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh----cccCCCCce
Q psy879 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ----KVTLPPGRH 97 (317)
Q Consensus 22 l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~ 97 (317)
+..++.++. +++|+||+|||||++++.+.+.+... ......++.+.......+...+...... ...++.+++
T Consensus 26 l~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~--~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~ 101 (272)
T PF12775_consen 26 LDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSD--KYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKK 101 (272)
T ss_dssp HHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTC--CEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSE
T ss_pred HHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcc--ccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcE
Confidence 566677776 79999999999999999988765322 2223334444333333333322211111 011223566
Q ss_pred eEEEEeCCCCCCHH------HHHHHHHHhhhcc------------CCceEEEEecCCC---cCchhHhhhcceeeecCCC
Q psy879 98 KIVILDEADSMTDG------AQQALRRTMEIYS------------NTTRFALACNNSE---KIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 98 ~vliiDE~d~l~~~------~~~~ll~~le~~~------------~~~~~il~~~~~~---~l~~~i~sR~~~i~f~~~~ 156 (317)
-|++|||+..-..+ ..+.|.++++... .++.+|.++++.. .+.+.+.+.+.++.++.|+
T Consensus 102 lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~ 181 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPS 181 (272)
T ss_dssp EEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----T
T ss_pred EEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCC
Confidence 79999999876543 3456666676311 3455777776542 4788999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy879 157 DAQLLSKVIEICEK 170 (317)
Q Consensus 157 ~~~~~~~l~~~~~~ 170 (317)
.+.+..+...++..
T Consensus 182 ~~sl~~If~~il~~ 195 (272)
T PF12775_consen 182 DESLNTIFSSILQS 195 (272)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 99999888877653
No 263
>KOG0480|consensus
Probab=98.82 E-value=2.2e-08 Score=91.35 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=102.0
Q ss_pred CCcccCCHHHHHHHHHHHhcCC------------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH
Q psy879 9 FSDIVGNEDTVERLKVFSSSGN------------VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 76 (317)
|-.+.|++.++.-+.-.+-+|- -.|+++.|.||+|||.+.++.+..+ +...+...+.++..+..
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs----PR~vYtsGkaSSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS----PRSVYTSGKASSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC----CcceEecCcccccccce
Confidence 5567899999887766654331 1379999999999999999999864 23344545544433321
Q ss_pred --HHHHH-HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC---
Q psy879 77 --TVRNK-IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE--- 137 (317)
Q Consensus 77 --~i~~~-~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~--- 137 (317)
.+++. -+.|.-.+..+.-++.+|..|||+|+|....+.++++.||.- +..+.++.++|+..
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhY 499 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHY 499 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCcc
Confidence 11110 011112222233368899999999999999999999999942 34566777788653
Q ss_pred ----------cCchhHhhhcce--eeecCCCHHHHHHHHHHHHH
Q psy879 138 ----------KIIEPIQSRCAM--LRYNKLTDAQLLSKVIEICE 169 (317)
Q Consensus 138 ----------~l~~~i~sR~~~--i~f~~~~~~~~~~~l~~~~~ 169 (317)
++.++|.|||.. +-...+++..=..+-..+..
T Consensus 500 dR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 500 DRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred ccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHH
Confidence 477999999988 44455555443333334433
No 264
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.82 E-value=3.3e-07 Score=76.24 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeE
Q psy879 20 ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKI 99 (317)
Q Consensus 20 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 99 (317)
..+..++.... .-.++||+|||||.+++.+++.+ +..++.+|++...+...+.+.+....+. ..-
T Consensus 23 ~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l-----G~~~~vfnc~~~~~~~~l~ril~G~~~~--------GaW 87 (231)
T PF12774_consen 23 LTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL-----GRFVVVFNCSEQMDYQSLSRILKGLAQS--------GAW 87 (231)
T ss_dssp HHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT-----T--EEEEETTSSS-HHHHHHHHHHHHHH--------T-E
T ss_pred HHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh-----CCeEEEecccccccHHHHHHHHHHHhhc--------Cch
Confidence 34555565443 45789999999999999999986 3457888998888888888888777654 357
Q ss_pred EEEeCCCCCCHHHHHHHHHHhhh--------------------ccCCceEEEEecCC----CcCchhHhhhcceeeecCC
Q psy879 100 VILDEADSMTDGAQQALRRTMEI--------------------YSNTTRFALACNNS----EKIIEPIQSRCAMLRYNKL 155 (317)
Q Consensus 100 liiDE~d~l~~~~~~~ll~~le~--------------------~~~~~~~il~~~~~----~~l~~~i~sR~~~i~f~~~ 155 (317)
+++||++.+..+....+...+.. ..+++.+.++.|+. ..+++.+++-++.+.+..|
T Consensus 88 ~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~P 167 (231)
T PF12774_consen 88 LCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVP 167 (231)
T ss_dssp EEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S-
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCC
Confidence 89999999998876655444431 12344456666643 4799999999999999999
Q ss_pred CHHHHHHHHHH
Q psy879 156 TDAQLLSKVIE 166 (317)
Q Consensus 156 ~~~~~~~~l~~ 166 (317)
+...+.+++..
T Consensus 168 D~~~I~ei~L~ 178 (231)
T PF12774_consen 168 DLSLIAEILLL 178 (231)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88877776544
No 265
>PF05729 NACHT: NACHT domain
Probab=98.81 E-value=4.1e-08 Score=77.68 Aligned_cols=136 Identities=14% Similarity=0.190 Sum_probs=78.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCC----ceEEecCCCCcCh---HHHHHHHHHHHhhcc---------cCCCCce
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKD----AVLELNASNDRGI---DTVRNKIKMFAQQKV---------TLPPGRH 97 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~----~~~~~~~~~~~~~---~~i~~~~~~~~~~~~---------~~~~~~~ 97 (317)
++++|++|+|||++++.++..+....... ..+.......... ..+.+.+........ .......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999998875443211 1222222111110 112222211100000 0012456
Q ss_pred eEEEEeCCCCCCHHHH--------HHHHHHhhh-ccCCceEEEEecCCCc-CchhHhhhcceeeecCCCHHHHHHHHHHH
Q psy879 98 KIVILDEADSMTDGAQ--------QALRRTMEI-YSNTTRFALACNNSEK-IIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167 (317)
Q Consensus 98 ~vliiDE~d~l~~~~~--------~~ll~~le~-~~~~~~~il~~~~~~~-l~~~i~sR~~~i~f~~~~~~~~~~~l~~~ 167 (317)
-+++||-+|.+..... ..|..++.. .++++.+++++..... -..........+...+++++++.+++.++
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 7899999998876432 244555555 4566778887765432 12222233356899999999999999887
Q ss_pred HH
Q psy879 168 CE 169 (317)
Q Consensus 168 ~~ 169 (317)
+.
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 64
No 266
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5e-08 Score=82.88 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=74.6
Q ss_pred ceeEEEEeCCCCCCHH------------HHHHHHHHhhhc----------cCCceEEEEe----cCCCcCchhHhhhcce
Q psy879 96 RHKIVILDEADSMTDG------------AQQALRRTMEIY----------SNTTRFALAC----NNSEKIIEPIQSRCAM 149 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~------------~~~~ll~~le~~----------~~~~~~il~~----~~~~~l~~~i~sR~~~ 149 (317)
...+|||||+|+.... .|..||.++|.. ..++.||.+. ..|+.+.|.++-|+.+
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 3589999999987432 477789998832 1233344332 2467899999999998
Q ss_pred -eeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHhh
Q psy879 150 -LRYNKLTDAQLLSKVIE-----------ICEKENI--SHTNDGLEAIVFTA--------QGDMRQALNNLQSTH 202 (317)
Q Consensus 150 -i~f~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~~~l~~~~--------~gd~r~~i~~l~~~~ 202 (317)
+++.+++.+++.++|.+ ..+.+|+ .+++++++.++..+ +=..|++...+++..
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 99999999999998863 2334554 46788888887654 223666666666543
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.81 E-value=3.4e-08 Score=86.45 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=75.7
Q ss_pred HHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH-HHHHHhhc-ccCC
Q psy879 18 TVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK-IKMFAQQK-VTLP 93 (317)
Q Consensus 18 ~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~-~~~~ 93 (317)
+.+....++.+ ....+++|+||+|+|||+++.++|+++...+ ..++.+..... ...+... +....... ....
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~l--~~~l~~~~~~~~~~~~~~~~~ 243 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADEL--IEILREIRFNNDKELEEVYDL 243 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHHH--HHHHHHHHhccchhHHHHHHH
Confidence 34434445552 1124699999999999999999999986543 23443333211 1111110 00000000 0000
Q ss_pred CCceeEEEEeCCCCC--CHHHHHHHHHHhhhcc-CCceEEEEecCCC-----cCchhHhhhcc----eeeecCC
Q psy879 94 PGRHKIVILDEADSM--TDGAQQALRRTMEIYS-NTTRFALACNNSE-----KIIEPIQSRCA----MLRYNKL 155 (317)
Q Consensus 94 ~~~~~vliiDE~d~l--~~~~~~~ll~~le~~~-~~~~~il~~~~~~-----~l~~~i~sR~~----~i~f~~~ 155 (317)
.....++||||+... +...+..|..+++..- ....+|++||... .+.+.+.||+. ++.|...
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~ 317 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGE 317 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCc
Confidence 135679999999654 5667888999988643 3456888888642 23456666653 3555443
No 268
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.80 E-value=2.1e-08 Score=76.27 Aligned_cols=101 Identities=28% Similarity=0.359 Sum_probs=59.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC---CCCceEEecCCCCcChHHHHHHHHHHHhhcccC---------------CC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPS---FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL---------------PP 94 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------------~~ 94 (317)
+++++||+|+|||++++.+++.+.... ....++.+++........+...+......+... ..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 599999999999999999999874210 022334443322223333322222211111100 00
Q ss_pred CceeEEEEeCCCCC-CHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSM-TDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l-~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....+|+|||+|.+ ..+..+.|..+++ ..++.+|+++++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 13469999999999 8777888877777 566778888766
No 269
>KOG0477|consensus
Probab=98.79 E-value=1.4e-08 Score=92.37 Aligned_cols=136 Identities=21% Similarity=0.315 Sum_probs=88.0
Q ss_pred cccCCHHHHHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH-
Q psy879 11 DIVGNEDTVERLKVFSSSGNV------------PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT- 77 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~- 77 (317)
.++|+..++..+.-++-+|.. -|+||.|.|||||+.+.+.+++.- ....+-...+++..+...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s----~RAV~tTGqGASavGLTa~ 525 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS----PRAVFTTGQGASAVGLTAY 525 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC----cceeEeccCCccccceeEE
Confidence 467899999988877765432 269999999999999999998752 111122222222222110
Q ss_pred HH-H-HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC-----
Q psy879 78 VR-N-KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE----- 137 (317)
Q Consensus 78 i~-~-~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~----- 137 (317)
++ . .-+.|......+--++++|.+|||+|+|+......+...||.- ...+.+|.++|+..
T Consensus 526 v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~ 605 (854)
T KOG0477|consen 526 VRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNP 605 (854)
T ss_pred EeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCC
Confidence 00 0 0112222222222367899999999999999988899988843 24455788888631
Q ss_pred --------cCchhHhhhccee
Q psy879 138 --------KIIEPIQSRCAML 150 (317)
Q Consensus 138 --------~l~~~i~sR~~~i 150 (317)
.+..+|.|||.++
T Consensus 606 s~tFaqNV~ltePIlSRFDiL 626 (854)
T KOG0477|consen 606 SLTFAQNVDLTEPILSRFDIL 626 (854)
T ss_pred ccchhhccccccchhhhccee
Confidence 5678999999883
No 270
>KOG0736|consensus
Probab=98.79 E-value=9.7e-08 Score=89.15 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=94.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCC
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN----DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADS 107 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 107 (317)
+.+|++|+||||||++++++|+++ +..+++++|.. .....+ ..+..+...... ..+.|+++-+.|-
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~l-----g~h~~evdc~el~~~s~~~~e--tkl~~~f~~a~~---~~pavifl~~~dv 501 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASEL-----GLHLLEVDCYELVAESASHTE--TKLQAIFSRARR---CSPAVLFLRNLDV 501 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh-----CCceEeccHHHHhhcccchhH--HHHHHHHHHHhh---cCceEEEEeccce
Confidence 349999999999999999999997 33455555432 111111 122222222211 4678899888887
Q ss_pred CCHH--------HHHHHHHHhh-----hccCCceEEEEecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCC
Q psy879 108 MTDG--------AQQALRRTME-----IYSNTTRFALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENI 173 (317)
Q Consensus 108 l~~~--------~~~~ll~~le-----~~~~~~~~il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~ 173 (317)
+..+ .+..+...+. ...+.+++|.+++..+.+++.+++-+.. +.++.++++|..+||+.......
T Consensus 502 l~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~- 580 (953)
T KOG0736|consen 502 LGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP- 580 (953)
T ss_pred eeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc-
Confidence 6422 2333333333 1335667888888999999999999887 99999999999999998876543
Q ss_pred CCCHHH-HHHHHHhcC
Q psy879 174 SHTNDG-LEAIVFTAQ 188 (317)
Q Consensus 174 ~i~~~~-~~~l~~~~~ 188 (317)
++++. .+.++.++.
T Consensus 581 -~n~~v~~k~~a~~t~ 595 (953)
T KOG0736|consen 581 -LNQDVNLKQLARKTS 595 (953)
T ss_pred -cchHHHHHHHHHhcC
Confidence 33332 334454443
No 271
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=5.5e-06 Score=83.37 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=114.0
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHH
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKM 84 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 84 (317)
.|..-.+++-++.+.+.|... ...+-.+++||+|+||||++..++... + ....+.+...+......+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-~---~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-N---NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-C---CeEEEecCcccCCHHHHHHHHHHH
Confidence 355567888888888777542 233459999999999999999988642 1 122223332221111111111111
Q ss_pred HHhh-------------cc--------------cC-CCCceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEEecC
Q psy879 85 FAQQ-------------KV--------------TL-PPGRHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 85 ~~~~-------------~~--------------~~-~~~~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~~~~ 135 (317)
+... .. .+ ....+-+++||+++.+.... ...+..++...+++..+|+++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 1000 00 00 01457799999999997555 44666667777888888887765
Q ss_pred CCcC-chhHhhhcceeeec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Q psy879 136 SEKI-IEPIQSRCAMLRYN----KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN 196 (317)
Q Consensus 136 ~~~l-~~~i~sR~~~i~f~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~ 196 (317)
...+ ...++-+...+.+. +++.+|...++.... |..++++.+..+.+.++|.+.-+.-
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~l 224 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQL 224 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHHH
Confidence 3222 23333333344444 889999999987765 6678999999999999999865443
No 272
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=98.71 E-value=2.6e-07 Score=71.41 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=83.5
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------C------------
Q psy879 208 VTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL------D------------ 269 (317)
Q Consensus 208 i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~------~------------ 269 (317)
||.++|.++++....+.++++++++.++|..+++..++++...|.+|..++..+..+++.+ +
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 6789999999999999999999999999999999999999999999999998875544332 1
Q ss_pred ----------CChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 270 ----------IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 270 ----------~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
.+.....++++.+.+...+++...++++.+|.++.++|....
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~~~ 132 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQLKS 132 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Confidence 111123338889999999999999999999999999997543
No 273
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.70 E-value=4.3e-08 Score=85.14 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred CCCCCCcccC----CHHHHHHHHHHHhcC----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH
Q psy879 5 RPQTFSDIVG----NEDTVERLKVFSSSG----NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76 (317)
Q Consensus 5 ~P~~~~~~~g----~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 76 (317)
...+|+++.. +..+.+....++.+. ...+++|+||+|+|||+++.++++++...+....++.... -..
T Consensus 122 ~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~----l~~ 197 (306)
T PRK08939 122 LQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE----FIR 197 (306)
T ss_pred hcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH----HHH
Confidence 3456777764 233444445555531 2346999999999999999999999854333332332211 001
Q ss_pred HHHHHHHHHHhhcccCCCCceeEEEEeCCCCC--CHHHHHHHHH-Hhhhc-cCCceEEEEecCC
Q psy879 77 TVRNKIKMFAQQKVTLPPGRHKIVILDEADSM--TDGAQQALRR-TMEIY-SNTTRFALACNNS 136 (317)
Q Consensus 77 ~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l--~~~~~~~ll~-~le~~-~~~~~~il~~~~~ 136 (317)
.+...+..-......-......++||||+..- ++-....++. +++.. ......|+|||-+
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 11111100000000000146779999999754 4444544544 44533 4667788888763
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.70 E-value=4.5e-08 Score=82.80 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=59.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHH-hhcccCCCCceeEEEEeCCCCC--
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA-QQKVTLPPGRHKIVILDEADSM-- 108 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~vliiDE~d~l-- 108 (317)
.+++|+||||+|||+++-++++.+... +..+..+...+ -...+........ .....-.-....|+||||+...
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~~e--l~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPD--LLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEHHH--HHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccC
Confidence 379999999999999999999998632 33333333221 1111111111100 0000000146789999999985
Q ss_pred CHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 109 TDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 109 ~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+....+.+..++...-.....++++|.+.
T Consensus 182 ~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 182 SQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred CHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 55566777776665433333488888653
No 275
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.68 E-value=1.8e-07 Score=76.70 Aligned_cols=198 Identities=17% Similarity=0.269 Sum_probs=133.3
Q ss_pred cCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccC
Q psy879 13 VGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL 92 (317)
Q Consensus 13 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 92 (317)
+++..+++.+.-.+..|. -+.|.||+||||||+.+.+-+.+ .++.+..++......+.....+|..+++..+....+
T Consensus 11 y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 11 YGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred cCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 344555555555566666 58999999999999999998865 444444444444444556677888888887765333
Q ss_pred CCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcC
Q psy879 93 PPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172 (317)
Q Consensus 93 ~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~ 172 (317)
|+ ++- + .|+ +.+-.+..++.+++.+...+.+..-|
T Consensus 88 Ph-------------~Tv----------~---eNI-------------------a~VP~L~~w~k~~i~~r~~ELl~lvg 122 (309)
T COG1125 88 PH-------------LTV----------A---ENI-------------------ATVPKLLGWDKERIKKRADELLDLVG 122 (309)
T ss_pred CC-------------ccH----------H---HHH-------------------HhhhhhcCCCHHHHHHHHHHHHHHhC
Confidence 21 110 0 011 11112347888888888888877655
Q ss_pred CCCCH-HHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh----------cCCHHHHH
Q psy879 173 ISHTN-DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV----------EGNMKDSY 241 (317)
Q Consensus 173 ~~i~~-~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~----------~~~~~~~~ 241 (317)
+ ++ +..+.+...-+|.-++-+..+++.+.+...+-.++...+++......+.+.+..+. .+|.++|+
T Consensus 123 L--~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~ 200 (309)
T COG1125 123 L--DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL 200 (309)
T ss_pred C--CHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHH
Confidence 4 45 46677777777778999999999999999899998888888776666555555443 46899999
Q ss_pred HHHHHH--HHcCC-----CHHHHHHH
Q psy879 242 KIIHHL--YKLGY-----APEDIIGN 260 (317)
Q Consensus 242 ~~~~~l--~~~~~-----~~~~i~~~ 260 (317)
++-... ++.|. +|..|+..
T Consensus 201 kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 201 KLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred hhhceEEEecCCeEEEeCCHHHHHhC
Confidence 987765 45553 66666654
No 276
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.68 E-value=3e-08 Score=79.33 Aligned_cols=135 Identities=19% Similarity=0.340 Sum_probs=81.6
Q ss_pred CCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC-CCcChHHHHHHHHHHHh
Q psy879 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS-NDRGIDTVRNKIKMFAQ 87 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 87 (317)
+..-+|..++++.+.-.+..|. .+.+.||+|+||||+.|++... ...+.+...++.... .......+|..++..+|
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~L-E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ 84 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGL-EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQ 84 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCC-cCCCCceEEECCEeccchhhHHHHHHhcCeecc
Confidence 4455677777777777777887 7999999999999999998764 333333222222111 11133344444444433
Q ss_pred hcccCCC-------------------------------------------------------------CceeEEEEeCCC
Q psy879 88 QKVTLPP-------------------------------------------------------------GRHKIVILDEAD 106 (317)
Q Consensus 88 ~~~~~~~-------------------------------------------------------------~~~~vliiDE~d 106 (317)
....+|+ -+++++++||..
T Consensus 85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT 164 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT 164 (240)
T ss_pred cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc
Confidence 3221111 157999999998
Q ss_pred C-CCHHHHHHHHHHhhhccCCc-eEEEEecCCCcCchhHhhhc
Q psy879 107 S-MTDGAQQALRRTMEIYSNTT-RFALACNNSEKIIEPIQSRC 147 (317)
Q Consensus 107 ~-l~~~~~~~ll~~le~~~~~~-~~il~~~~~~~l~~~i~sR~ 147 (317)
. |.++.....+..|.+..... .+|++| +.-.+...+.+|.
T Consensus 165 SALDPElv~EVL~vm~~LA~eGmTMivVT-HEM~FAr~Vadrv 206 (240)
T COG1126 165 SALDPELVGEVLDVMKDLAEEGMTMIIVT-HEMGFAREVADRV 206 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCeEEEEe-chhHHHHHhhheE
Confidence 5 57888888888887655443 345555 4445555555554
No 277
>PF14516 AAA_35: AAA-like domain
Probab=98.68 E-value=2.8e-05 Score=68.69 Aligned_cols=230 Identities=14% Similarity=0.146 Sum_probs=126.6
Q ss_pred ccCCHHHHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC---cChHHHHHHH-H---
Q psy879 12 IVGNEDTVERLKVFSSS-GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND---RGIDTVRNKI-K--- 83 (317)
Q Consensus 12 ~~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~---~~~~~i~~~~-~--- 83 (317)
.+.++.+-+.+...+.+ |. .+.+.||..+|||++...+.+.+...+....++++..... ...+.+-..+ .
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred ccCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 34566566666666655 66 6899999999999999999988865443333333332211 1111110000 0
Q ss_pred ------------------------HHHhhcccCCCCceeEEEEeCCCCCCH--HH----HHHHHHHhhhcc-----CCce
Q psy879 84 ------------------------MFAQQKVTLPPGRHKIVILDEADSMTD--GA----QQALRRTMEIYS-----NTTR 128 (317)
Q Consensus 84 ------------------------~~~~~~~~~~~~~~~vliiDE~d~l~~--~~----~~~ll~~le~~~-----~~~~ 128 (317)
.+...........+-|++|||+|.+.. .. ...|+.+.+... ....
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 000000000113577999999998865 22 223333333211 2344
Q ss_pred EEEEecCCCcCchhH-h---hhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhC
Q psy879 129 FALACNNSEKIIEPI-Q---SRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG 204 (317)
Q Consensus 129 ~il~~~~~~~l~~~i-~---sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~ 204 (317)
+|++...+..+.... . .-+..++.++.+.+|+...+... +...++..++.+...++|-+--.-..+..++..
T Consensus 171 li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred EEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 555544322221111 1 33445889999999998866554 667888889999999999998776666665543
Q ss_pred CCcccHHHHHh-hc-C-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q psy879 205 FGHVTAEYVFK-VC-D-EPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLG 251 (317)
Q Consensus 205 ~~~i~~~~v~~-~~-~-~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 251 (317)
.++.+++-+ +. . ....+.+..+.+.+. +..+...++..++..+
T Consensus 247 --~~~~~~l~~~a~~~~~~~~~hL~~l~~~L~--~~~~L~~~~~~il~~~ 292 (331)
T PF14516_consen 247 --QITLEQLLEEAITDNGIYNDHLDRLLDRLQ--QNPELLEAYQQILFSG 292 (331)
T ss_pred --cCcHHHHHHHHHHhcccHHHHHHHHHHHHc--cCHHHHHHHHHHHhCC
Confidence 444444322 11 1 122234445554441 2235555566655544
No 278
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=1.7e-06 Score=88.64 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=102.5
Q ss_pred CCCCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEe---cCCC---------
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLEL---NASN--------- 71 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~---~~~~--------- 71 (317)
|..+++++|.+..++.+...+.- +....+.++|++|+||||+|+++++.+........++.. ....
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccccc
Confidence 34588999999888888877743 233349999999999999999999887433211111110 0000
Q ss_pred CcC-hHHHH-HHHHHHHhhc-cc---------CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 72 DRG-IDTVR-NKIKMFAQQK-VT---------LPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 72 ~~~-~~~i~-~~~~~~~~~~-~~---------~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
... ...+. ..+....... .. ....++-++++|+++.. ...+.|....+...+...+|+||.+..-+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 000 00011 1111110000 00 00135668899998753 33444444333334556778887763321
Q ss_pred chhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHHH
Q psy879 140 IEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT--NDGLEAIVFTAQGDMRQALNNL 198 (317)
Q Consensus 140 ~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~--~~~~~~l~~~~~gd~r~~i~~l 198 (317)
... .-...++...+++++..+.+...+.+....-+ .+....++..++|-+- |+..+
T Consensus 338 ~~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPL-Al~vl 395 (1153)
T PLN03210 338 RAH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPL-GLNVL 395 (1153)
T ss_pred Hhc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcH-HHHHH
Confidence 110 01135788889998888888877754332111 1334567788888654 34333
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=7.4e-07 Score=68.03 Aligned_cols=126 Identities=20% Similarity=0.323 Sum_probs=73.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC-----------------CceEEecCC----------C-------CcChHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFK-----------------DAVLELNAS----------N-------DRGIDTVR 79 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~-----------------~~~~~~~~~----------~-------~~~~~~i~ 79 (317)
++++|+||+||||++..++..|....++ +.++++... . ....+.+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHH
Confidence 8999999999999999999988654321 112222210 0 00122222
Q ss_pred HHHHHHHhhcccCCCCceeEEEEeCCCCC---CHHHHHHHHHHhhhccCCceEEEEecC--CCcCchhHhhhcceeeecC
Q psy879 80 NKIKMFAQQKVTLPPGRHKIVILDEADSM---TDGAQQALRRTMEIYSNTTRFALACNN--SEKIIEPIQSRCAMLRYNK 154 (317)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~vliiDE~d~l---~~~~~~~ll~~le~~~~~~~~il~~~~--~~~l~~~i~sR~~~i~f~~ 154 (317)
+......+.++ ....++||||+..| ++....++-.+|.. ...+|.+-+. .+.+...++++...+-|
T Consensus 88 ~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P~v~~ik~~~~v~v~-- 158 (179)
T COG1618 88 EIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHPLVQRIKKLGGVYVF-- 158 (179)
T ss_pred HHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCChHHHHhhhcCCEEEE--
Confidence 22221112211 23579999999988 44455556666653 2235555543 35677888999888776
Q ss_pred CCHHHHHHHHHHHH
Q psy879 155 LTDAQLLSKVIEIC 168 (317)
Q Consensus 155 ~~~~~~~~~l~~~~ 168 (317)
++++....++.++.
T Consensus 159 lt~~NR~~i~~~Il 172 (179)
T COG1618 159 LTPENRNRILNEIL 172 (179)
T ss_pred EccchhhHHHHHHH
Confidence 55555545555544
No 280
>PRK04132 replication factor C small subunit; Provisional
Probab=98.64 E-value=1.2e-08 Score=98.52 Aligned_cols=47 Identities=53% Similarity=1.034 Sum_probs=44.1
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTT 47 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~l 47 (317)
.+||||++|+|++||+++++.|+.++++++.||++|+||||+||+..
T Consensus 10 ~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 10 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred HHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 37999999999999999999999999999999999999999999643
No 281
>PHA02774 E1; Provisional
Probab=98.63 E-value=3.9e-07 Score=83.79 Aligned_cols=136 Identities=23% Similarity=0.291 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCc
Q psy879 18 TVERLKVFSSSGNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR 96 (317)
Q Consensus 18 ~~~~l~~~l~~~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 96 (317)
....|+.++++..- ..++|+||||||||+++.++++.+.+. .+..+|..+... .. +-.+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~----vi~fvN~~s~Fw------------Lq----pl~d 479 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK----VISFVNSKSHFW------------LQ----PLAD 479 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC----EEEEEECccccc------------cc----hhcc
Confidence 34556666654321 249999999999999999999997432 233344321111 11 1146
Q ss_pred eeEEEEeCCCCCC-HHHHHHHHHHhhhcc-------------CCceEEEEecCC---CcCchhHhhhcceeeecCC----
Q psy879 97 HKIVILDEADSMT-DGAQQALRRTMEIYS-------------NTTRFALACNNS---EKIIEPIQSRCAMLRYNKL---- 155 (317)
Q Consensus 97 ~~vliiDE~d~l~-~~~~~~ll~~le~~~-------------~~~~~il~~~~~---~~l~~~i~sR~~~i~f~~~---- 155 (317)
.+++++||+-.-. .-....|..+++..+ ..+.+|+|||-. +.-...+.||...++|+.+
T Consensus 480 ~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~P~d 559 (613)
T PHA02774 480 AKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPFPLD 559 (613)
T ss_pred CCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCCCcC
Confidence 7899999993221 112335666666321 125688888854 2446788999999888743
Q ss_pred ---------CHHHHHHHHHHHHHHcCC
Q psy879 156 ---------TDAQLLSKVIEICEKENI 173 (317)
Q Consensus 156 ---------~~~~~~~~l~~~~~~~~~ 173 (317)
++...+.+..+.-.+.++
T Consensus 560 ~~G~P~f~ltd~~WKsFF~rlw~~LdL 586 (613)
T PHA02774 560 ENGNPVFELTDANWKSFFERLWSQLDL 586 (613)
T ss_pred CCCCEeeeeCchhHHHHHHHHHHHcCC
Confidence 345566665555444333
No 282
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.58 E-value=6.3e-06 Score=76.10 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=111.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhccc----------CCCCceeEEEE
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVT----------LPPGRHKIVIL 102 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~vlii 102 (317)
++++.|++|+||-.+++++-+.- . ...+++.+||.. ...+-+.+.+-.+....+. +.....+.+|+
T Consensus 338 pvll~GEtGtGKe~laraiH~~s--~-~~gpfvAvNCaA-ip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNS--E-AAGPFVAVNCAA-IPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcc--c-ccCCeEEEEecc-chHHhhhHHHhccCccccccchhccccccceecCCCccHH
Confidence 59999999999999999999863 2 456678888753 2222222222111111111 11246789999
Q ss_pred eCCCCCCHHHHHHHHHHhhhc----------cCCceEEEEecCCC-------cCchhHhhhcce--eeecCCCHH-----
Q psy879 103 DEADSMTDGAQQALRRTMEIY----------SNTTRFALACNNSE-------KIIEPIQSRCAM--LRYNKLTDA----- 158 (317)
Q Consensus 103 DE~d~l~~~~~~~ll~~le~~----------~~~~~~il~~~~~~-------~l~~~i~sR~~~--i~f~~~~~~----- 158 (317)
||+..|.-..|..|++.+++. +-.+.+|.+|+.+- .+-+.+-=|... |.+||+.+.
T Consensus 414 deIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~ 493 (606)
T COG3284 414 DEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIP 493 (606)
T ss_pred HHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHH
Confidence 999999999999999999853 12345777777652 444555555544 555665442
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCCHHHHHHHHHHhhh--CCCcccH
Q psy879 159 QLLSKVIEICEKENISHTNDGLEAIVF-TAQGDMRQALNNLQSTHN--GFGHVTA 210 (317)
Q Consensus 159 ~~~~~l~~~~~~~~~~i~~~~~~~l~~-~~~gd~r~~i~~l~~~~~--~~~~i~~ 210 (317)
-+..++.+... ....++++++..+.. ...||+|+..|.++.++. +.+.+..
T Consensus 494 ~l~~~~~~~~~-~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~ 547 (606)
T COG3284 494 LLDRILKREND-WRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRV 547 (606)
T ss_pred HHHHHHHHccC-CCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEc
Confidence 23333333222 346789999887654 579999999999997665 4444444
No 283
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.58 E-value=4.7e-09 Score=92.44 Aligned_cols=136 Identities=22% Similarity=0.311 Sum_probs=73.4
Q ss_pred cccCCHHHHHHHHHHHhcCC------------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh--H
Q psy879 11 DIVGNEDTVERLKVFSSSGN------------VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI--D 76 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~ 76 (317)
.++|++.++..+.-.+-+|. --|+||.|.||+|||.+.+.+++.. +...+.....+...+. .
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEECCCCcccCCccce
Confidence 47788888877544433222 1279999999999999999876542 1111222221111111 0
Q ss_pred HHHH-HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-------------ccCCceEEEEecCCC-----
Q psy879 77 TVRN-KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI-------------YSNTTRFALACNNSE----- 137 (317)
Q Consensus 77 ~i~~-~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~-------------~~~~~~~il~~~~~~----- 137 (317)
..++ .-+.+...+..+..++++|++|||+|++..+...+|++.||. .+..+.++.++|+..
T Consensus 101 ~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~ 180 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDP 180 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-T
T ss_pred eccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcch
Confidence 0000 000011111111125788999999999999999999999994 245566788888653
Q ss_pred --------cCchhHhhhccee
Q psy879 138 --------KIIEPIQSRCAML 150 (317)
Q Consensus 138 --------~l~~~i~sR~~~i 150 (317)
.+.+++.|||..+
T Consensus 181 ~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 181 NKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp TS-CGCCT-S-CCCHCC-SEE
T ss_pred hhhhHHhcccchhhHhhcCEE
Confidence 4678999999984
No 284
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.58 E-value=2.9e-08 Score=78.52 Aligned_cols=64 Identities=14% Similarity=0.329 Sum_probs=39.0
Q ss_pred ceeEEEEeCCCCC---CHHHHHHHHHHhhhccCCceEEEEecC--CCcCchhHhhh--cceeeecCCCHHHHHH
Q psy879 96 RHKIVILDEADSM---TDGAQQALRRTMEIYSNTTRFALACNN--SEKIIEPIQSR--CAMLRYNKLTDAQLLS 162 (317)
Q Consensus 96 ~~~vliiDE~d~l---~~~~~~~ll~~le~~~~~~~~il~~~~--~~~l~~~i~sR--~~~i~f~~~~~~~~~~ 162 (317)
...+++|||+..| .+.-++++.++|+ ++..+|.+-.. ...+.+.+++| +.++...+-+.+.+..
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~ 165 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPE 165 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhh
Confidence 5679999999987 4567888888888 33345555443 35789999998 6667776666555443
No 285
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.57 E-value=2.5e-06 Score=65.77 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=98.6
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeC
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDE 104 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE 104 (317)
.+..|. .++++||+|||||++.+.+|..+ .++.+..+++....+..++..+|..+....+.+..++..
T Consensus 25 ~v~~Ge--~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t--------- 92 (223)
T COG4619 25 SVRAGE--FIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT--------- 92 (223)
T ss_pred eecCCc--eEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc---------
Confidence 344555 58999999999999999999975 555566677777777788899999999988887433211
Q ss_pred CCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q psy879 105 ADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAI- 183 (317)
Q Consensus 105 ~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l- 183 (317)
++ +|. -++-.++. ..++.....+.|... ..+...+.+=
T Consensus 93 ---------------Ve---DNl----------ifP~~~r~-------rr~dr~aa~~llar~------~l~~~~L~k~i 131 (223)
T COG4619 93 ---------------VE---DNL----------IFPWQIRN-------RRPDRAAALDLLARF------ALPDSILTKNI 131 (223)
T ss_pred ---------------hh---hcc----------ccchHHhc-------cCCChHHHHHHHHHc------CCchhhhcchh
Confidence 01 111 11111121 244555555555443 4455555543
Q ss_pred HHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh
Q psy879 184 VFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233 (317)
Q Consensus 184 ~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 233 (317)
...+|| -++.+.+++..-...+....+++..+++.....++.+++..+.
T Consensus 132 t~lSGG-E~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v 180 (223)
T COG4619 132 TELSGG-EKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180 (223)
T ss_pred hhccch-HHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh
Confidence 344554 5666666666555666667777777888877777777766554
No 286
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.52 E-value=2e-07 Score=75.18 Aligned_cols=48 Identities=33% Similarity=0.565 Sum_probs=33.1
Q ss_pred cccCCHHHHHHHHHHH---hcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 11 DIVGNEDTVERLKVFS---SSGNVPNIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l---~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
.++|+++.++.+...+ ..+..++++++|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3789999999999888 33444569999999999999999999887543
No 287
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.50 E-value=2.8e-05 Score=69.43 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=67.6
Q ss_pred cCCCCCCcccCCHHH--HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 4 YRPQTFSDIVGNEDT--VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 4 y~P~~~~~~~g~~~~--~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
|.|..|++ +..+ +..+..+++++. |+++.||+|||||+++.++...-.+... ...+...+...
T Consensus 185 ~~P~~~~~---r~k~~~L~rl~~fve~~~--Nli~lGp~GTGKThla~~l~~~~a~~sG----------~f~T~a~Lf~~ 249 (449)
T TIGR02688 185 YEPEGFEA---RQKLLLLARLLPLVEPNY--NLIELGPKGTGKSYIYNNLSPYVILISG----------GTITVAKLFYN 249 (449)
T ss_pred CCcccCCh---HHHHHHHHhhHHHHhcCC--cEEEECCCCCCHHHHHHHHhHHHHHHcC----------CcCcHHHHHHH
Confidence 66766652 2222 223445777776 8999999999999999998876211111 11122221111
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCC----HHHHHHHHHHhhhc---------cCCceEEEEecCCC
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMT----DGAQQALRRTMEIY---------SNTTRFALACNNSE 137 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~----~~~~~~ll~~le~~---------~~~~~~il~~~~~~ 137 (317)
+.. .. ...-+.+.+|++||+..+. ++..+.+..+|+.. ..+..+|++.|-..
T Consensus 250 L~~---~~-lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 250 IST---RQ-IGLVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred HHH---HH-HhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 111 10 0012578899999999863 23567777778732 34566888877654
No 288
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.49 E-value=2e-07 Score=73.16 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=41.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeee
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRY 152 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f 152 (317)
.+.+++-||.. ++.++....+++++++......-|+++++...+..+.+.|+..++-
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~ 212 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALED 212 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeC
Confidence 68999999985 7899999999999998766544444444556666777777665443
No 289
>KOG0481|consensus
Probab=98.49 E-value=4.4e-06 Score=74.91 Aligned_cols=138 Identities=22% Similarity=0.315 Sum_probs=84.5
Q ss_pred cccCCHHHHHHHHHHHhcCCC---c---------eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh--H
Q psy879 11 DIVGNEDTVERLKVFSSSGNV---P---------NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI--D 76 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~~---~---------~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~ 76 (317)
.+.|++++++.+.=.+-+|.- | |+|+.|.||+.|+.+.+.+-+.- +-..+....+++..+. .
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs----PIaVYTSGKGSSAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS----PIAVYTSGKGSSAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC----ceEEEecCCCcccccceee
Confidence 467999999988766655431 1 69999999999999999776541 1111111222221111 1
Q ss_pred HHHHHHH-HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC-----
Q psy879 77 TVRNKIK-MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE----- 137 (317)
Q Consensus 77 ~i~~~~~-~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~----- 137 (317)
.+++-.. .|........-++..|++|||+|+|..+..-++.+.||.- ...+.++.++|+..
T Consensus 408 V~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd 487 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDD 487 (729)
T ss_pred EEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccc
Confidence 1111100 0000000001157889999999999999999999999942 23444666666542
Q ss_pred --------cCchhHhhhcceeee
Q psy879 138 --------KIIEPIQSRCAMLRY 152 (317)
Q Consensus 138 --------~l~~~i~sR~~~i~f 152 (317)
.+.++|.|||..|.+
T Consensus 488 ~Kt~~dNIDf~~TILSRFDmIFI 510 (729)
T KOG0481|consen 488 TKTGEDNIDFMPTILSRFDMIFI 510 (729)
T ss_pred cCCcccccchhhhHhhhccEEEE
Confidence 367999999988443
No 290
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.42 E-value=2.6e-06 Score=85.64 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=100.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhccc---CC-------CCceeEEEE
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVT---LP-------PGRHKIVIL 102 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~-------~~~~~vlii 102 (317)
.+|+.||..+|||+++..+|+.. | ..++.+|.... .++++.++.+...... +. ..++--+++
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t-g----hkfVRINNHEH---TdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVL 961 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET-G----HKFVRINNHEH---TDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVL 961 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh-C----ccEEEecCccc---chHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEe
Confidence 49999999999999999999985 3 33677765432 2233344433322100 00 013446889
Q ss_pred eCCCCCCHHHHHHHHHHhhh--------------ccCCceEEEEecCCC------cCchhHhhhcceeeecCCCHHHHHH
Q psy879 103 DEADSMTDGAQQALRRTMEI--------------YSNTTRFALACNNSE------KIIEPIQSRCAMLRYNKLTDAQLLS 162 (317)
Q Consensus 103 DE~d~l~~~~~~~ll~~le~--------------~~~~~~~il~~~~~~------~l~~~i~sR~~~i~f~~~~~~~~~~ 162 (317)
||..-...+..++|.+.++. |+++..+..|-|+|. .+..+++.|+..++|...+++|+..
T Consensus 962 DELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ 1041 (4600)
T COG5271 962 DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEE 1041 (4600)
T ss_pred eccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHH
Confidence 99999999999999999972 445554444555442 4679999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhc
Q psy879 163 KVIEICEKENISHTNDGLEAIVFTA 187 (317)
Q Consensus 163 ~l~~~~~~~~~~i~~~~~~~l~~~~ 187 (317)
+|..+| ++.+.-+.++++..
T Consensus 1042 ILh~rc-----~iapSyakKiVeVy 1061 (4600)
T COG5271 1042 ILHGRC-----EIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHhccC-----ccCHHHHHHHHHHH
Confidence 999854 67888888877654
No 291
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.41 E-value=2.4e-06 Score=69.64 Aligned_cols=114 Identities=22% Similarity=0.344 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHH-------HHHhhc
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIK-------MFAQQK 89 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~ 89 (317)
+..+.+..++.++. ...++.||||||||++++.+...+.... ..++.+.+. ......+++..+ .+....
T Consensus 5 ~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT-~~Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 5 EQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPT-NKAAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESS-HHHHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCc-HHHHHHHHHhhCcchhhHHHHHhcC
Confidence 34455566666554 2488899999999999999998875432 334444332 222233333211 111100
Q ss_pred cc--C----CCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 90 VT--L----PPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 90 ~~--~----~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
.. . ......++||||+..+.......|++.... ....+|++..+.
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 00 0 023457999999999999988888888875 466788887653
No 292
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.39 E-value=2.1e-06 Score=62.73 Aligned_cols=71 Identities=34% Similarity=0.487 Sum_probs=45.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPS---FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 110 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 110 (317)
+.||||||+|||++++.+++.+.... ....++..++... .+ . ......++++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~-----------~w-~-----gY~~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDK-----------FW-D-----GYQGQPVVIIDDFGQDND 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccc-----------hh-h-----ccCCCcEEEEeecCcccc
Confidence 47999999999999999998885321 1122333222211 11 1 113568999999998875
Q ss_pred H----HHHHHHHHhh
Q psy879 111 G----AQQALRRTME 121 (317)
Q Consensus 111 ~----~~~~ll~~le 121 (317)
. ....+++++.
T Consensus 64 ~~~~~~~~~l~~l~s 78 (107)
T PF00910_consen 64 GYNYSDESELIRLIS 78 (107)
T ss_pred ccchHHHHHHHHHHh
Confidence 4 4566677665
No 293
>KOG2543|consensus
Probab=98.35 E-value=8.5e-06 Score=70.77 Aligned_cols=184 Identities=19% Similarity=0.208 Sum_probs=103.6
Q ss_pred cccCCHHHHHHHHHHHhcCC--Cce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC---------------
Q psy879 11 DIVGNEDTVERLKVFSSSGN--VPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND--------------- 72 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~--~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~--------------- 72 (317)
.+.+++..+..|...+-... .|. +.+||.+|||||.+++.+.+...- +.+++++...
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhc
Confidence 45678888888888775543 455 799999999999999999998621 1222222110
Q ss_pred ----c----C--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHH---HHHHHHHhhhcc-CCceEEEEecCCCc
Q psy879 73 ----R----G--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA---QQALRRTMEIYS-NTTRFALACNNSEK 138 (317)
Q Consensus 73 ----~----~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~---~~~ll~~le~~~-~~~~~il~~~~~~~ 138 (317)
. . .+.+.+.+..+.+.+........-++++|.+|.+.+-. .+.|++.-+-.+ +.+.++++.....+
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 0 0 12222333334442211111345678999999987433 334444433222 35556666554443
Q ss_pred CchhHhhh--cceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHhcCCCHHHHHHHHHHhhh
Q psy879 139 IIEPIQSR--CAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL--------EAIVFTAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 139 l~~~i~sR--~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~--------~~l~~~~~gd~r~~i~~l~~~~~ 203 (317)
....=-+. ...++|+.|+.+++..++..--- | ....+.. ..+...|. |++.....+..++-
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p--~-~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~wp 232 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDNP--G-KRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAWP 232 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcCCc--c-ccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Confidence 32211112 23399999999999998876311 0 1222111 22223444 88888888876554
No 294
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.34 E-value=9.7e-06 Score=68.09 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=108.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc-CCCCCCceEEecCCCCcChHHHHHHHHHHHh---h-----cccCCCCceeEEEEe
Q psy879 33 NIIISGPPGVGKTTTILCLARILL-GPSFKDAVLELNASNDRGIDTVRNKIKMFAQ---Q-----KVTLPPGRHKIVILD 103 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-----~~~~~~~~~~vliiD 103 (317)
.+|+.||.|.||+.+++.+...-. ....+..++++||...++.......++.... . ...+-..+..++++|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehH
Confidence 599999999999999999876422 1234567999999887776555544443211 1 111223578899999
Q ss_pred CCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEecCC-------CcCchhHhhhcceeeecCCCHHH------
Q psy879 104 EADSMTDGAQQALRRTMEIYS-----------NTTRFALACNNS-------EKIIEPIQSRCAMLRYNKLTDAQ------ 159 (317)
Q Consensus 104 E~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~~~-------~~l~~~i~sR~~~i~f~~~~~~~------ 159 (317)
|+..+..+.|.-|++.+|+.. ....+|.-|... ..+-+.+-.|...+.|..|.-.+
T Consensus 290 eigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edie 369 (531)
T COG4650 290 EIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 (531)
T ss_pred hhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCccccC
Confidence 999999999999999999631 111122222111 13445566666666665543221
Q ss_pred --HHHHHHHHHHHcC--CCCCHHHHHHHH-------HhcCCCHHHHHHHHHHhhh--CCCcccHHHHHh
Q psy879 160 --LLSKVIEICEKEN--ISHTNDGLEAIV-------FTAQGDMRQALNNLQSTHN--GFGHVTAEYVFK 215 (317)
Q Consensus 160 --~~~~l~~~~~~~~--~~i~~~~~~~l~-------~~~~gd~r~~i~~l~~~~~--~~~~i~~~~v~~ 215 (317)
+.--|...+...| +.+..++..... ....|+.|..-.-+-.++. +.+.|+.+.|+.
T Consensus 370 pnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ 438 (531)
T COG4650 370 PNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVED 438 (531)
T ss_pred CCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHH
Confidence 1122333343333 334444433322 2236888877665544332 667888876643
No 295
>PHA02624 large T antigen; Provisional
Probab=98.33 E-value=4.3e-06 Score=77.42 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=64.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH---
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--- 110 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--- 110 (317)
++|+||+|||||+++.++++.+.|. ++.+|....... .+. . +..+.+++++|++..-.-
T Consensus 434 il~~GPpnTGKTtf~~sLl~~L~G~-----vlsVNsPt~ks~--------FwL-~----pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 434 WLFKGPVNSGKTTLAAALLDLCGGK-----SLNVNCPPDKLN--------FEL-G----CAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe-----EEEeeCCcchhH--------HHh-h----hhhhceEEEeeeccccccccc
Confidence 9999999999999999999997443 344554332211 111 1 124678999999953211
Q ss_pred -----H---HHHHHHHHhhhc--------cCC------ceEEEEecCCCcCchhHhhhcce-eeecC
Q psy879 111 -----G---AQQALRRTMEIY--------SNT------TRFALACNNSEKIIEPIQSRCAM-LRYNK 154 (317)
Q Consensus 111 -----~---~~~~ll~~le~~--------~~~------~~~il~~~~~~~l~~~i~sR~~~-i~f~~ 154 (317)
. ...-|+.+|+.. +.+ ..+|+ |.+...++.+++-|+.. +.|.+
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlli-T~Ney~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIV-TMNEYLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEE-eecCcccchhHHHHHHHhccccc
Confidence 1 124566666532 111 11344 44558899999999877 77765
No 296
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.31 E-value=4.4e-05 Score=65.00 Aligned_cols=152 Identities=14% Similarity=0.220 Sum_probs=92.8
Q ss_pred cccCCHHHHHHHHH---HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHh
Q psy879 11 DIVGNEDTVERLKV---FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87 (317)
Q Consensus 11 ~~~g~~~~~~~l~~---~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 87 (317)
+++--+++++.+.. .+... ..|.++.|.+|+||+++++..+-.. +..++.+......+..++++.++.+..
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~-~Gh~LLvG~~GsGr~sl~rLaa~i~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~ 82 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQP-RGHALLVGVGGSGRQSLARLAAFIC-----GYEVFQIEITKGYSIKDFKEDLKKALQ 82 (268)
T ss_dssp -----HHHHHHHHHHHHHHCST-TEEEEEECTTTSCHHHHHHHHHHHT-----TEEEE-TTTSTTTHHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCC-CCCeEEecCCCccHHHHHHHHHHHh-----ccceEEEEeeCCcCHHHHHHHHHHHHH
Confidence 35555666665444 34433 3589999999999999999666542 344666666656667777777766555
Q ss_pred hcccCCCCceeEEEEeCCCCCCHHHH---------------------HH--------------------H-HHHhhhccC
Q psy879 88 QKVTLPPGRHKIVILDEADSMTDGAQ---------------------QA--------------------L-RRTMEIYSN 125 (317)
Q Consensus 88 ~~~~~~~~~~~vliiDE~d~l~~~~~---------------------~~--------------------l-l~~le~~~~ 125 (317)
.... .+.+.+++++|.+-...... +. + --+++.-..
T Consensus 83 ~ag~--~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~ 160 (268)
T PF12780_consen 83 KAGI--KGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRK 160 (268)
T ss_dssp HHHC--S-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCC
T ss_pred HHhc--cCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHh
Confidence 4322 25678888888765432211 11 1 111223346
Q ss_pred CceEEEEecCCC-------cCchhHhhhcceeeecCCCHHHHHHHHHHHHHH
Q psy879 126 TTRFALACNNSE-------KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170 (317)
Q Consensus 126 ~~~~il~~~~~~-------~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~ 170 (317)
+..+|++-++.. +..|++.++|.+..|.+++.+.+..+-...+..
T Consensus 161 nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 161 NLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp CEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred heeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 677888776643 346999999999999999999999887766543
No 297
>KOG0741|consensus
Probab=98.29 E-value=7.3e-05 Score=67.70 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=87.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC-CCCcChHHH--HHHHHHHHhhcccCCCCceeEEEEeCCCCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA-SNDRGIDTV--RNKIKMFAQQKVTLPPGRHKIVILDEADSMT 109 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~-~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~ 109 (317)
.+||.||||+|||++|-.+|.. ...+++-+.. .+-.+..+. ...+...+..+ ..+.-.++++|+++.+.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA---YkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA---YKSPLSIIVVDDIERLL 611 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHh---hcCcceEEEEcchhhhh
Confidence 4999999999999999999976 2345554432 222222221 11222222222 12456799999999874
Q ss_pred ------HHH----HHHHHHHhhhccCC--ceEEEEecCCCcCchh--Hhhhcce-eeecCCCH-HHHHHHHHHHHHHcCC
Q psy879 110 ------DGA----QQALRRTMEIYSNT--TRFALACNNSEKIIEP--IQSRCAM-LRYNKLTD-AQLLSKVIEICEKENI 173 (317)
Q Consensus 110 ------~~~----~~~ll~~le~~~~~--~~~il~~~~~~~l~~~--i~sR~~~-i~f~~~~~-~~~~~~l~~~~~~~~~ 173 (317)
+.. ..+|+=++...|+. -.+|++|+..-.++.. +.+.|.. ++.+.++. +++.+++... ++
T Consensus 612 D~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n~ 687 (744)
T KOG0741|consen 612 DYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----NI 687 (744)
T ss_pred cccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----cC
Confidence 333 34444455554443 4567766654333322 1233333 77777775 7777777764 32
Q ss_pred CCCHHHHHHHHHhcCC-----CHHHHHHHHHHhhh
Q psy879 174 SHTNDGLEAIVFTAQG-----DMRQALNNLQSTHN 203 (317)
Q Consensus 174 ~i~~~~~~~l~~~~~g-----d~r~~i~~l~~~~~ 203 (317)
++++....++....+ .+.+.+.+++.+..
T Consensus 688 -fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 688 -FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred -CCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 445444444433222 25556655555433
No 298
>KOG2228|consensus
Probab=98.28 E-value=1.4e-05 Score=68.30 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh------
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ------ 88 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------ 88 (317)
|.++-+.++..+..|....+++.||.|+|||.+.-.........+.+...+.+|+.-......+.+........
T Consensus 33 ~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k 112 (408)
T KOG2228|consen 33 QKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVK 112 (408)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhhe
Confidence 34455556666667776679999999999999877666552222223334455543222111111111111100
Q ss_pred ---c--------------ccCCCCceeEEEEeCCCCCCHHH-HHHHHHHhhh---ccCCceEEEEecCCC---cCchhHh
Q psy879 89 ---K--------------VTLPPGRHKIVILDEADSMTDGA-QQALRRTMEI---YSNTTRFALACNNSE---KIIEPIQ 144 (317)
Q Consensus 89 ---~--------------~~~~~~~~~vliiDE~d~l~~~~-~~~ll~~le~---~~~~~~~il~~~~~~---~l~~~i~ 144 (317)
+ ..-..+.+-++|+||+|.+.+.. |.-|..+++- ....+++|.+|..-+ .+-+.++
T Consensus 113 ~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVK 192 (408)
T KOG2228|consen 113 SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVK 192 (408)
T ss_pred eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHH
Confidence 0 00011334567788999876554 5555566552 223455677776654 6779999
Q ss_pred hhcce--eee-cCCCHHHHHHHHHHHH
Q psy879 145 SRCAM--LRY-NKLTDAQLLSKVIEIC 168 (317)
Q Consensus 145 sR~~~--i~f-~~~~~~~~~~~l~~~~ 168 (317)
|||.. |.+ ++.+-++..+++++..
T Consensus 193 SRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 193 SRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hhcccceeeccCCCChHHHHHHHHHHh
Confidence 99975 444 4445677777777654
No 299
>PRK10536 hypothetical protein; Provisional
Probab=98.26 E-value=1.1e-05 Score=67.53 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=31.9
Q ss_pred cccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 11 DIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+.......+..++.++. .+++.||+|||||+++.+++...
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 34444555555666676643 69999999999999999999853
No 300
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.24 E-value=0.00027 Score=62.43 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=51.1
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHHHhhhc--cCCceEEEEecCCC---------------cCchhHhhh-cce-eeecCC
Q psy879 95 GRHKIVILDEADSMTDGAQQALRRTMEIY--SNTTRFALACNNSE---------------KIIEPIQSR-CAM-LRYNKL 155 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~~~~ll~~le~~--~~~~~~il~~~~~~---------------~l~~~i~sR-~~~-i~f~~~ 155 (317)
..+-|++|||.|++.++....+++.+... .+++.+|++.+... ..-.....+ ++. +..|++
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~ 250 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPP 250 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCC
Confidence 45778999999999998777776666533 25777888776421 011222223 344 888889
Q ss_pred CHHHHHHHHHHHHHH
Q psy879 156 TDAQLLSKVIEICEK 170 (317)
Q Consensus 156 ~~~~~~~~l~~~~~~ 170 (317)
+..++.+++...+..
T Consensus 251 ~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 251 SPSDLERYLNELLES 265 (325)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999888877543
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.24 E-value=4.1e-06 Score=66.90 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=60.2
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhccc---------C----
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVT---------L---- 92 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~---- 92 (317)
+..|. .+.+.||+|+||||+.+.++..+.... +...+.............+..+....+.+.. +
T Consensus 25 i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 25 IEPGE--SLAIIGPSGSGKSTLARLILGLLRPTS-GRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHHhccCCCC-CeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 44555 699999999999999999998753222 1111110000000000111111100000000 0
Q ss_pred ---------CCCceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 93 ---------PPGRHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 93 ---------~~~~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
...+++++++||.. .+.......+.+.+.+... ...+|+++++..
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 01468899999997 5677778888888776533 456777787754
No 302
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.23 E-value=0.00014 Score=64.80 Aligned_cols=153 Identities=11% Similarity=0.158 Sum_probs=87.0
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHHHhhhc------cCCceEEEEecCCC---cCchhHhhh-cceeeecCCCHHHHHHHHH
Q psy879 96 RHKIVILDEADSMTDGAQQALRRTMEIY------SNTTRFALACNNSE---KIIEPIQSR-CAMLRYNKLTDAQLLSKVI 165 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~~~ll~~le~~------~~~~~~il~~~~~~---~l~~~i~sR-~~~i~f~~~~~~~~~~~l~ 165 (317)
.+.||+||.+..-... .+.+.+.+.+- ..-..+||.|++.. .+.+++-+| +..+.+...+++.-++++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 4689999998764433 33333333321 24456788887753 455666555 3448899999999999999
Q ss_pred HHHHHcC-C-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHH
Q psy879 166 EICEKEN-I-------------------SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAV 225 (317)
Q Consensus 166 ~~~~~~~-~-------------------~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i 225 (317)
..+.... . ..+...++..+...||-+..+--+.++.-.+. --.+.|.+.+.++..+..
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe--~p~~Av~~iI~qsa~eI~ 304 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE--SPEEAVEEIISQSASEIR 304 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH
Confidence 8876531 0 12345567777888888887777777664432 223334444433322221
Q ss_pred HHHHH------HHhcCCHHHHHHHHHHHHHcC
Q psy879 226 KEMLL------NCVEGNMKDSYKIIHHLYKLG 251 (317)
Q Consensus 226 ~~l~~------~~~~~~~~~~~~~~~~l~~~~ 251 (317)
.-.+. .-..+...++..++..|.+++
T Consensus 305 k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~ 336 (431)
T PF10443_consen 305 KMFLLDDSDDAKSLKWTREQAWYLIKLLSKND 336 (431)
T ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHhccCC
Confidence 11111 112234566666666654433
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=3.1e-06 Score=67.50 Aligned_cols=109 Identities=19% Similarity=0.317 Sum_probs=61.6
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--CcChH------------------HHHHH-HH
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--DRGID------------------TVRNK-IK 83 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~------------------~i~~~-~~ 83 (317)
.+..|. .+.+.||+|+||||+.+.++..+..... ... ++... ..... .+.+. +.
T Consensus 24 ~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G-~i~--~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 24 TIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSG-EIL--IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCC-EEE--ECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhC
Confidence 344555 6999999999999999999997532222 111 11100 00000 01000 00
Q ss_pred HHHhhccc---CCCCceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 84 MFAQQKVT---LPPGRHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 84 ~~~~~~~~---~~~~~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
.-...... ....++.++++||.. .+.......+.+.+.+......+|+++++...
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 00000000 001467899999997 56777788888888766555667777877544
No 304
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.22 E-value=1.5e-06 Score=83.44 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=33.0
Q ss_pred CceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 95 GRHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
.+++|+++||+-. +..+....+.+.|.+......+|+++++.
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3789999999975 56677777888888777667788888774
No 305
>PRK04296 thymidine kinase; Provisional
Probab=98.22 E-value=1.1e-05 Score=65.41 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=53.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC-C----------CcCh-------HHHHHHHHHHHhhcccCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS-N----------DRGI-------DTVRNKIKMFAQQKVTLPP 94 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-~----------~~~~-------~~i~~~~~~~~~~~~~~~~ 94 (317)
..+++||+|+||||++..++..+...... ++.+.+. + ..+. ....+.+..+.. ..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~--v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-----~~ 76 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMK--VLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-----EG 76 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCe--EEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-----hC
Confidence 37899999999999999999876433222 2212110 0 0010 011122222211 12
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
+.+.+|+|||++.+..+....+.+.+. +....+|++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 467899999999987765555666654 344556666544
No 306
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.22 E-value=2.2e-06 Score=68.86 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=62.0
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC-hHHHHHHHHHHHhhc------------cc
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG-IDTVRNKIKMFAQQK------------VT 91 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~------------~~ 91 (317)
.+..|. .+.+.||+|+||||+++.++..+.. ..+. +.++...... ....+..+....+.+ ..
T Consensus 24 ~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~-~~G~--i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 24 ELKQGE--KIALLGRSGSGKSTLLQLLTGDLKP-QQGE--ITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhccCCC-CCCE--EEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 344555 6999999999999999999987532 2221 1111110000 000010000000000 00
Q ss_pred CC-------------CCceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 92 LP-------------PGRHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 92 ~~-------------~~~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
++ ..+++++++||.. .+.......+.+.+.+......+|+++++...
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 00 1468999999997 56777788888888765555667888877654
No 307
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=1.4e-05 Score=62.81 Aligned_cols=24 Identities=46% Similarity=0.574 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++++||||+|||+++..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999998874
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.20 E-value=1.1e-05 Score=64.97 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=62.7
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHH------------hh-cccC
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA------------QQ-KVTL 92 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~-~~~~ 92 (317)
+..|. .+.+.||+|+||||+.+.++..+.. ..+...+............++..+.... .. ...+
T Consensus 22 i~~G~--~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 22 IEAGE--IVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 44555 6999999999999999999986532 2222222111111111112222221111 00 0001
Q ss_pred CC-------------CceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 93 PP-------------GRHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 93 ~~-------------~~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+. .++.++++||.. .+.......+.+.+.+... ...+|+++++..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 10 368999999998 5677788888888876543 456777776644
No 309
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.20 E-value=8.9e-07 Score=72.17 Aligned_cols=185 Identities=14% Similarity=0.146 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh---HHHHHHHHHHHhhcc
Q psy879 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI---DTVRNKIKMFAQQKV 90 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~ 90 (317)
|...+.+.+.--+.+|+ .+.+.||+|+|||++.+.+...+....... .+........+. ..++..++..+|..
T Consensus 19 G~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g- 94 (263)
T COG1127 19 GDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLSEEELYEIRKRMGVLFQQG- 94 (263)
T ss_pred CCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccCHHHHHHHHhheeEEeecc-
Confidence 44555555555566676 689999999999999999999874443322 222211111111 22222222222221
Q ss_pred cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHH
Q psy879 91 TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170 (317)
Q Consensus 91 ~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~ 170 (317)
+|...|.-. +|+-| ...+-..+++..+.+.....++.
T Consensus 95 ------------------------ALFssltV~-eNVaf------------------plre~~~lp~~~i~~lv~~KL~~ 131 (263)
T COG1127 95 ------------------------ALFSSLTVF-ENVAF------------------PLREHTKLPESLIRELVLMKLEL 131 (263)
T ss_pred ------------------------ccccccchh-Hhhhe------------------ehHhhccCCHHHHHHHHHHHHHh
Confidence 111111100 11100 01122367888888887777765
Q ss_pred cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh----------cCCHHHH
Q psy879 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV----------EGNMKDS 240 (317)
Q Consensus 171 ~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~----------~~~~~~~ 240 (317)
-| +...+.+.+...-.|.+++-..+.++.+.+..-+-.|+...-.+......+.+++..+. .+|...+
T Consensus 132 VG--L~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 132 VG--LRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL 209 (263)
T ss_pred cC--CChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH
Confidence 55 45777888888777889999999999888776666665555555555555555655543 4577777
Q ss_pred HHHHHHH
Q psy879 241 YKIIHHL 247 (317)
Q Consensus 241 ~~~~~~l 247 (317)
+.+.+..
T Consensus 210 ~~i~Drv 216 (263)
T COG1127 210 LTIADRV 216 (263)
T ss_pred HhhhceE
Confidence 7765554
No 310
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.18 E-value=4.5e-05 Score=77.29 Aligned_cols=140 Identities=20% Similarity=0.266 Sum_probs=92.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHH-----------HhhcccCCCCceeEEE
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF-----------AQQKVTLPPGRHKIVI 101 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~vli 101 (317)
.+++.|.||+|||+++.++|+.. | ..++.+|-+.... +.+.++.- ...++.....++.-|+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t-G----~kliRINLSeQTd---L~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVl 1616 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT-G----KKLIRINLSEQTD---LCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVL 1616 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh-c----CceEEeeccccch---HHHHhCCCCCcccCceeEecccHHHHHhhcCCEEE
Confidence 59999999999999999999985 2 2355555543221 11111110 0011111124567899
Q ss_pred EeCCCCCCHHHHHHHHHHhhhc--------------cCCceEEEEecCCC------cCchhHhhhcceeeecCCCHHHHH
Q psy879 102 LDEADSMTDGAQQALRRTMEIY--------------SNTTRFALACNNSE------KIIEPIQSRCAMLRYNKLTDAQLL 161 (317)
Q Consensus 102 iDE~d~l~~~~~~~ll~~le~~--------------~~~~~~il~~~~~~------~l~~~i~sR~~~i~f~~~~~~~~~ 161 (317)
+||+.-.+....+.|...++.. ++++++..+-|+.+ -+++.+..|+.++.+..++.+++.
T Consensus 1617 LDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~ 1696 (4600)
T COG5271 1617 LDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDIT 1696 (4600)
T ss_pred eehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHH
Confidence 9999999888777777776621 35555555545432 589999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q psy879 162 SKVIEICEKENISHTNDGLEAIV 184 (317)
Q Consensus 162 ~~l~~~~~~~~~~i~~~~~~~l~ 184 (317)
.+...... .+.++...+++
T Consensus 1697 ~Ia~~~yp----~v~~d~~~kii 1715 (4600)
T COG5271 1697 HIANKMYP----QVNEDWRLKII 1715 (4600)
T ss_pred HHHHhhCC----ccChHHHHHHH
Confidence 88776542 35555554444
No 311
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.17 E-value=4.2e-06 Score=79.03 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.+.||+|+||||+++.+++...
T Consensus 350 vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 350 VLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444444455665 699999999999999999998653
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.16 E-value=1.2e-05 Score=63.52 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=60.0
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--CcCh-HHHH--------------HHHHHHHhh
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--DRGI-DTVR--------------NKIKMFAQQ 88 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--~~~~-~~i~--------------~~~~~~~~~ 88 (317)
+..|. .+.|.||+|+||||+.+.++..+. +..+. +.++... .... ...+ ..+.....-
T Consensus 23 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~--v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 23 VRRGE--VHALLGENGAGKSTLMKILSGLYK-PDSGE--ILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred EeCCC--EEEEECCCCCCHHHHHHHHhCCCC-CCCeE--EEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHH
Confidence 45555 799999999999999999998753 22222 1122111 1111 1111 111111000
Q ss_pred cccCCCCceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 89 KVTLPPGRHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 89 ~~~~~~~~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
..+++++++||.. .+.......+.+.+.+.. ....+|+++++..
T Consensus 98 -----~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 98 -----ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred -----hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 1468999999998 467777888888887653 3455677776643
No 313
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.15 E-value=6.3e-06 Score=60.89 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=39.2
Q ss_pred cccCCHHHHHHH----HHHHhcCCC--ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceE
Q psy879 11 DIVGNEDTVERL----KVFSSSGNV--PN-IIISGPPGVGKTTTILCLARILLGPSFKDAVL 65 (317)
Q Consensus 11 ~~~g~~~~~~~l----~~~l~~~~~--~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~ 65 (317)
.+.||+-+.+.+ ...+.+..+ |- +.|.|++|||||.+++.+|+.++.......++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 578988666654 444544433 22 67999999999999999999988665444433
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.13 E-value=1.3e-05 Score=68.42 Aligned_cols=35 Identities=43% Similarity=0.539 Sum_probs=28.8
Q ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 22 l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+....+.+...++++.||+|+||||+.+.++..+.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34444567667899999999999999999999874
No 315
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.12 E-value=0.00074 Score=64.75 Aligned_cols=176 Identities=17% Similarity=0.166 Sum_probs=105.2
Q ss_pred CCcccCCHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHH-
Q psy879 9 FSDIVGNEDTVERLKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA- 86 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 86 (317)
....+-++. |..-+..+ ...-++|.-|.|+||||++-.++. ...+......+.++.+++......+..+....
T Consensus 18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 444444444 44444444 333499999999999999999988 33444444444444443222111111111111
Q ss_pred -------------hhcc--------------cCCCCceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEEecCCCc
Q psy879 87 -------------QQKV--------------TLPPGRHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 87 -------------~~~~--------------~~~~~~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+... .....++-.+++|+-+...... ..++..+++..|++..+|++|.....
T Consensus 93 ~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 93 ATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 0000 0011356789999999997665 55677777888899988888865432
Q ss_pred -CchhHhhhcceeeec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH
Q psy879 139 -IIEPIQSRCAMLRYN----KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMR 192 (317)
Q Consensus 139 -l~~~i~sR~~~i~f~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r 192 (317)
-...++=|-..+++. .++.+|..+++.... +..++...++.+...++|-+.
T Consensus 173 l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 173 LGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SLPLDAADLKALYDRTEGWAA 228 (894)
T ss_pred CcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CCCCChHHHHHHHhhcccHHH
Confidence 233333333332222 457788888877753 478889999999999998544
No 316
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.12 E-value=7.2e-06 Score=78.51 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
+++++++||+-. +..+....+.+.+.+..++..+|++|++.
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 579999999985 56667777777777665555577777775
No 317
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.11 E-value=2.2e-05 Score=64.48 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=39.8
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhc---cCCceEEEEecCCCcCchhHhhhcc
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIY---SNTTRFALACNNSEKIIEPIQSRCA 148 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~---~~~~~~il~~~~~~~l~~~i~sR~~ 148 (317)
.+.++|+||.- .|.......|++.+++. ++.+.++++|+..+.+++-+-.+..
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ll 245 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEE
Confidence 68999999985 45666777888877753 3456799999999888877655543
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.11 E-value=2.2e-05 Score=62.76 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=59.0
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCce-----EEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEE
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAV-----LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIV 100 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vl 100 (317)
+..|. .+.+.||+|+||||+.+.++..+........+ .........+..+ +..+.....-. .++.++
T Consensus 22 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~laral~-----~~p~ll 93 (177)
T cd03222 22 VKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIAAALL-----RNATFY 93 (177)
T ss_pred ECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHHHHHh-----cCCCEE
Confidence 34454 69999999999999999999875332221111 0011000011111 12222211111 467899
Q ss_pred EEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCC
Q psy879 101 ILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNS 136 (317)
Q Consensus 101 iiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~ 136 (317)
++||.. .+.......+.+.+.+... ...+|+++++.
T Consensus 94 lLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 94 LFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 999998 4567777777777765432 24567777664
No 319
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=2e-05 Score=63.27 Aligned_cols=185 Identities=17% Similarity=0.230 Sum_probs=111.2
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCce---EEecCC----CCcChHHHHH
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAV---LELNAS----NDRGIDTVRN 80 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~---~~~~~~----~~~~~~~i~~ 80 (317)
.++=.+|..++++.+.--+.++. ..-|.||+||||||+.+.+-+-. ....+..+ +.+... .......+|.
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmn-dl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr 88 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMN-DLIPGARVEGEVLLDGKNIYDPKVDVVELRR 88 (253)
T ss_pred ceeEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhc-ccCcCceEEEEEEECCeeccCCCCCHHHHHH
Confidence 45666788888777766565555 57899999999999999987642 22111110 111111 1345667788
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHH
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~ 160 (317)
.++..++.|.-++.+ |-|++ ... .+.......++
T Consensus 89 ~vGMVFQkPnPFp~S-----IydNV---------------ayG--------------------------~r~~g~~~~~l 122 (253)
T COG1117 89 RVGMVFQKPNPFPMS-----IYDNV---------------AYG--------------------------LRLHGIKDKEL 122 (253)
T ss_pred HheeeccCCCCCCch-----HHHHH---------------HHh--------------------------HHhhccchHHH
Confidence 888777776322210 11111 000 11112222566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhc---
Q psy879 161 LSKVIEICEKENISHTNDGLEAIVFT---AQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE--- 234 (317)
Q Consensus 161 ~~~l~~~~~~~~~~i~~~~~~~l~~~---~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~--- 234 (317)
.+++...+++..+ =++..+.+.+. .+|..++.+-+.+..+...+.+-.|+.-.+++...-..+.+++..+..
T Consensus 123 deiVe~sLk~AaL--WdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yT 200 (253)
T COG1117 123 DEIVESSLKKAAL--WDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYT 200 (253)
T ss_pred HHHHHHHHHHhHh--HHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccE
Confidence 6666665554332 24444444332 345678888888888888888888888888888888888888888763
Q ss_pred -----CCHHHHHHH
Q psy879 235 -----GNMKDSYKI 243 (317)
Q Consensus 235 -----~~~~~~~~~ 243 (317)
++..+|-++
T Consensus 201 IviVTHnmqQAaRv 214 (253)
T COG1117 201 IVIVTHNMQQAARV 214 (253)
T ss_pred EEEEeCCHHHHHHH
Confidence 355555554
No 320
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.10 E-value=4.5e-06 Score=68.32 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC-hHHHHHHHHHHHhhcccCCCCc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG-IDTVRNKIKMFAQQKVTLPPGR 96 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 96 (317)
+++.+.-.+..|. .+-+.|++||||||++++++... .+..+...+......... ....+ ..
T Consensus 22 ~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~~---------------~~ 83 (252)
T COG1124 22 ALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAFY---------------RP 83 (252)
T ss_pred hhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCccccchhhc---------------cc
Confidence 4444444456666 79999999999999999999864 333333233222211110 00111 22
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC
Q psy879 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~ 176 (317)
-..|+=|--..+++. ....+++.+|-.. ...+..+.. +.+.+. .+.++
T Consensus 84 VQmVFQDp~~SLnP~--~tv~~~l~Epl~~--------------------------~~~~~~~~~--i~~~L~--~VgL~ 131 (252)
T COG1124 84 VQMVFQDPYSSLNPR--RTVGRILSEPLRP--------------------------HGLSKSQQR--IAELLD--QVGLP 131 (252)
T ss_pred eeEEecCCccccCcc--hhHHHHHhhhhcc--------------------------CCccHHHHH--HHHHHH--HcCCC
Confidence 334444444444432 1122223322111 223332222 333333 24567
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh
Q psy879 177 NDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233 (317)
Q Consensus 177 ~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 233 (317)
++.+........|.-|+-+.+.++.+...+.+-.|+.-.+++.+....+..++..+.
T Consensus 132 ~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~ 188 (252)
T COG1124 132 PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK 188 (252)
T ss_pred HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH
Confidence 888888887777889999999999888888888888877788777777777666654
No 321
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.09 E-value=2.5e-05 Score=60.77 Aligned_cols=103 Identities=21% Similarity=0.276 Sum_probs=61.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----------------------------CcChHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN----------------------------DRGIDTVRNKIKMF 85 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~----------------------------~~~~~~i~~~~~~~ 85 (317)
+.+|+++|.||||+|..++-...+...+..++.+-... ..........-..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 67888889999999999997765544333222111110 00111111111111
Q ss_pred HhhcccCCCCceeEEEEeCCCCCCHH---HHHHHHHHhhhccCCceEEEEecCC
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMTDG---AQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~~~---~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
.........+.+.+||+||+....+- ..+.+++++++.|+.+-+|+|+.+.
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11111112367899999999876332 3567888999999999999999774
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.09 E-value=3.6e-05 Score=59.47 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=59.6
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC------CCcChHHHHHHHHHHHhhcccCCCCceeE
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS------NDRGIDTVRNKIKMFAQQKVTLPPGRHKI 99 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 99 (317)
+..|. .+.+.||+|+||||+++.++..+.... +... ++.. ...+..+.+ .+.....-. .++.+
T Consensus 23 ~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~--~~~~~~i~~~~~lS~G~~~-rv~laral~-----~~p~i 91 (144)
T cd03221 23 INPGD--RIGLVGRNGAGKSTLLKLIAGELEPDE-GIVT--WGSTVKIGYFEQLSGGEKM-RLALAKLLL-----ENPNL 91 (144)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCc-eEEE--ECCeEEEEEEccCCHHHHH-HHHHHHHHh-----cCCCE
Confidence 34455 699999999999999999998753222 2111 1110 001222222 122111111 46789
Q ss_pred EEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 100 VILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 100 liiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++||.. .+.......+.+.+.+.. ..+++++++.+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~~ 128 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDRY 128 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCHH
Confidence 9999997 567777888888887652 45666776643
No 323
>KOG0058|consensus
Probab=98.07 E-value=6e-06 Score=77.33 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~ 60 (317)
+.+.+.-.++.|+ .+-+.||+|+||||++..+-+. +.+..
T Consensus 483 Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rf-Y~Pts 522 (716)
T KOG0058|consen 483 VLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRF-YDPTS 522 (716)
T ss_pred hhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHh-cCCCC
Confidence 5555555566666 7999999999999999999986 44443
No 324
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=3.5e-05 Score=60.45 Aligned_cols=96 Identities=14% Similarity=0.266 Sum_probs=57.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--C---------------cChHHHHHHHHHHHhhcccCCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--D---------------RGIDTVRNKIKMFAQQKVTLPPG 95 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--~---------------~~~~~i~~~~~~~~~~~~~~~~~ 95 (317)
.+.|.||+|+||||+.+.++..+... .+. +.++... . .+..+.+ .+....... .
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~-~G~--i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~-r~~l~~~l~-----~ 97 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPT-SGE--ILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQ-RVALARALL-----L 97 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ccE--EEECCEEcccCCHHHHHhceEEEeeCCHHHHH-HHHHHHHHh-----c
Confidence 69999999999999999999875322 111 1222110 0 0011111 111111111 3
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
.++++++||.. .+.......+.+.+.+... ...+++++++..
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999998 5667778888888776533 355677776643
No 325
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.07 E-value=0.00056 Score=56.98 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=76.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--------------CcChHHHH-------HHHHHHHhhccc
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN--------------DRGIDTVR-------NKIKMFAQQKVT 91 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--------------~~~~~~i~-------~~~~~~~~~~~~ 91 (317)
.+++.|++|||||++++.+...+.. .....++...... ....+.+. +.+.........
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~-~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH-KFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc-cCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4899999999999999999887532 2221111111000 00111111 111122221111
Q ss_pred CCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-ccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHH
Q psy879 92 LPPGRHKIVILDEADSMTDGAQQALRRTMEI-YSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167 (317)
Q Consensus 92 ~~~~~~~vliiDE~d~l~~~~~~~ll~~le~-~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~ 167 (317)
.....+.++|+|++..-. -....+..++.. .+-++.+|+++.....+++.+++-+..+-+-+.+..++..++...
T Consensus 94 ~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRNM 169 (241)
T ss_pred cCCCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHhc
Confidence 112346799999986411 112335555542 345677899999999999999988888554457777776665554
No 326
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=8.5e-06 Score=65.41 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=31.4
Q ss_pred CceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 95 GRHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 95 ~~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
..++++++||... +....+..+.+.+.+... ...+|+++++..
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4689999999974 567778888888876543 356777777643
No 327
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.05 E-value=1.2e-05 Score=76.81 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=31.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
+++++++||+.. +.++....+.+.+.+...+..+|++|++.
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 578999999975 56667777878777765566678888775
No 328
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.04 E-value=7.9e-06 Score=75.41 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=41.8
Q ss_pred CCCCCCcccCCHHHHHHHHHHH----hcC--CCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 5 RPQTFSDIVGNEDTVERLKVFS----SSG--NVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l----~~~--~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+..-|++++|.+++++.+..++ .+. +-+.++|.||||+|||++++.+++.+.
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3456899999999999877766 332 223599999999999999999999874
No 329
>PRK13695 putative NTPase; Provisional
Probab=98.04 E-value=5e-05 Score=60.72 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=47.1
Q ss_pred CceeEEEEeCCCCC---CHHHHHHHHHHhhhccCCceEEEEecCCC--cCchhHhhhcc--eeeecCCCHHHHHHHHHHH
Q psy879 95 GRHKIVILDEADSM---TDGAQQALRRTMEIYSNTTRFALACNNSE--KIIEPIQSRCA--MLRYNKLTDAQLLSKVIEI 167 (317)
Q Consensus 95 ~~~~vliiDE~d~l---~~~~~~~ll~~le~~~~~~~~il~~~~~~--~l~~~i~sR~~--~i~f~~~~~~~~~~~l~~~ 167 (317)
..+.++++||+..+ .....+.+...++ ....+|++++... .+.+.+.+|.. ++++.+-+.+++...+.++
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 46789999997654 3344666666664 2356777777642 45667766644 4788787777777766664
Q ss_pred H
Q psy879 168 C 168 (317)
Q Consensus 168 ~ 168 (317)
.
T Consensus 172 ~ 172 (174)
T PRK13695 172 L 172 (174)
T ss_pred H
Confidence 4
No 330
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.04 E-value=6.3e-07 Score=74.97 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCC
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP 94 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 94 (317)
...+++.+.-.+.+|. ...+.||+||||||+.+++++.+. +..+...++..+.......++...+....|.+..
T Consensus 14 ~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~--- 87 (258)
T COG1120 14 GKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA--- 87 (258)
T ss_pred CeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC---
Confidence 3344445555556666 689999999999999999999764 3333333333333333444454444444443211
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCC
Q psy879 95 GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENI 173 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~ 173 (317)
...+-+.| +|. ..|... =.|..+++++.... ...++.-++
T Consensus 88 -~~~~tV~d-------------------------~V~------------~GR~p~~~~~~~~~~~D~~~v-~~aL~~~~~ 128 (258)
T COG1120 88 -PFGLTVYE-------------------------LVL------------LGRYPHLGLFGRPSKEDEEIV-EEALELLGL 128 (258)
T ss_pred -CCCcEEee-------------------------hHh------------hcCCcccccccCCCHhHHHHH-HHHHHHhCc
Confidence 11111110 011 112111 12334555554422 222222232
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh
Q psy879 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233 (317)
Q Consensus 174 ~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 233 (317)
..-+-..+.+.|+ .-|+..-+..+.+.+.+.+-.|+.-..++..+...+.+++..+.
T Consensus 129 --~~la~r~~~~LSG-GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 129 --EHLADRPVDELSG-GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred --HHHhcCcccccCh-hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 2222223334444 57777777788888877777777777777777777777777766
No 331
>KOG3347|consensus
Probab=98.02 E-value=1e-05 Score=60.97 Aligned_cols=26 Identities=42% Similarity=0.676 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 30 NVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 30 ~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..|++|++|.||+||||++..+|...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 45789999999999999999999774
No 332
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.01 E-value=2.7e-05 Score=65.09 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcC
Q psy879 157 DAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235 (317)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~ 235 (317)
.++..+.+.+.+..-| ++++.+.......+|..|+-+.+.++.+...+.+..|+...+++.+....+..++..+...
T Consensus 82 ~~~~~~~v~elL~~Vg--l~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 82 KEERRERVLELLEKVG--LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred hhHHHHHHHHHHHHhC--CCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 3444444555554445 5677777777777888999999999998888888888888888888888888887776544
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=7.6e-05 Score=66.85 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=54.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC----CCCCCceEEecCCCCcChHHHHHHHHHHHhhccc------------CCCCc
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG----PSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVT------------LPPGR 96 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~ 96 (317)
.++|+||+|+||||++..+|..+.. ......++..++.......+++...... ..++. ....+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv~~~~~~~~l~~~L~~~~~ 254 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVKAIESFKDLKEEITQSKD 254 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC-CcceEeeCcHHHHHHHHHHhCC
Confidence 4999999999999999999987642 1222333333332111111111100000 00000 00146
Q ss_pred eeEEEEeCCCCCCHHH--HHHHHHHhhhcc--CCceEEEEecC
Q psy879 97 HKIVILDEADSMTDGA--QQALRRTMEIYS--NTTRFALACNN 135 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~--~~~ll~~le~~~--~~~~~il~~~~ 135 (317)
+.+|+||.+..+..+. ...+.++++... ..+.+|+.++.
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 7899999999887543 345666666432 24556665544
No 334
>KOG0479|consensus
Probab=98.01 E-value=5.9e-05 Score=68.91 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=84.1
Q ss_pred cccCCHHHHHHHHHHHhc--------CCC----ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh---
Q psy879 11 DIVGNEDTVERLKVFSSS--------GNV----PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI--- 75 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~--------~~~----~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--- 75 (317)
.|+|++.+++.+.-.+-+ |.- -|+|+.|.|.+.|+.+.+.+.+..- . ..-...-+++..+.
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAp--l--AI~TTGRGSSGVGLTAA 377 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAP--L--AIATTGRGSSGVGLTAA 377 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccc--c--cccccCCCCCCccceeE
Confidence 478999999987665543 321 1599999999999999999987531 0 00000111111110
Q ss_pred -----HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC
Q psy879 76 -----DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE 137 (317)
Q Consensus 76 -----~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~ 137 (317)
+.=...++. .+.. -+++.||+|||+|+|+.-..-++...||.. ...+.++.++|+..
T Consensus 378 VTtD~eTGERRLEA---GAMV--LADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 378 VTTDQETGERRLEA---GAMV--LADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred Eeeccccchhhhhc---CceE--EccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccc
Confidence 000011111 1111 157899999999999999999999999943 34566788888642
Q ss_pred -------------cCchhHhhhcce
Q psy879 138 -------------KIIEPIQSRCAM 149 (317)
Q Consensus 138 -------------~l~~~i~sR~~~ 149 (317)
.++..+.|||..
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLSRFDL 477 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLSRFDL 477 (818)
T ss_pred cccCCCCChhhccCCcHHHHhhhcE
Confidence 478999999987
No 335
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.01 E-value=1.1e-05 Score=66.49 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh-
Q psy879 155 LTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV- 233 (317)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~- 233 (317)
.+.++...+..+.+..-|+ .+..+....+-+|.+|+-..+.++.+...+.+-.|+...+++......+.+.+..+.
T Consensus 102 ~~~~e~~~~a~~~L~~VgL---~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~ 178 (248)
T COG1116 102 KSKAEARERAKELLELVGL---AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE 178 (248)
T ss_pred cchHhHHHHHHHHHHHcCC---cchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH
Confidence 4555555666666665555 344556666777789999999999988888777777777666555444444444433
Q ss_pred ---------cCCHHHHHHHHHHHHHcCCCH
Q psy879 234 ---------EGNMKDSYKIIHHLYKLGYAP 254 (317)
Q Consensus 234 ---------~~~~~~~~~~~~~l~~~~~~~ 254 (317)
.+|.++|+.+-+..+.....|
T Consensus 179 ~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 179 ETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred hhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 457888888776664333333
No 336
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=9.5e-06 Score=64.82 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=31.2
Q ss_pred CceeEEEEeCCCC-CCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 95 GRHKIVILDEADS-MTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 95 ~~~~vliiDE~d~-l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
.+++++++||... +.......+.+.+.+... ...+|+++++..
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 4789999999985 566778888888876543 355777776643
No 337
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.00 E-value=1.4e-05 Score=76.59 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
+++++++||+.. +..+....+.+.+.....+..+|++|+++
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~ 530 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRL 530 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecH
Confidence 689999999985 56667777888777665556677778775
No 338
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.00 E-value=9.3e-06 Score=71.15 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=113.9
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCC
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEA 105 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~ 105 (317)
++.|. .+-+.|++|+||||+.+++.+.+... +...+........+..+.+- ...+-.+||=|-.
T Consensus 310 L~~gq--TlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~~~~~~mrp------------lR~~mQvVFQDPy 373 (534)
T COG4172 310 LRRGQ--TLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDGLSRKEMRP------------LRRRMQVVFQDPY 373 (534)
T ss_pred ecCCC--eEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccccChhhhhh------------hhhhceEEEeCCC
Confidence 44454 59999999999999999999986432 22222222221122222111 1134568888877
Q ss_pred CCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy879 106 DSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVF 185 (317)
Q Consensus 106 d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~ 185 (317)
..+++.. .+-+++++ ...++=+.++..|..+.+...+..-| +|+.....+..
T Consensus 374 gSLsPRm--tV~qII~E------------------------GL~vh~~~ls~~eR~~rv~~aL~EVG--LDp~~r~RYPh 425 (534)
T COG4172 374 GSLSPRM--TVGQIIEE------------------------GLRVHEPKLSAAERDQRVIEALEEVG--LDPATRNRYPH 425 (534)
T ss_pred CCCCccc--CHHHHhhh------------------------hhhhcCCCCCHHHHHHHHHHHHHHcC--CChhHhhcCCc
Confidence 7777642 12223332 12234457888888888887776544 67999988888
Q ss_pred hcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcC
Q psy879 186 TAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEG 235 (317)
Q Consensus 186 ~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~ 235 (317)
..+|.-|+-+.+.++.....+.|..|+...+++.+....+.++++.+..+
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998989888888888888888888888887644
No 339
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.00 E-value=2.9e-05 Score=69.02 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=68.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCC-CCCceEEe--------cCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEE
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPS-FKDAVLEL--------NASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVIL 102 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vlii 102 (317)
..++|||++|+|||.+.-.+...+-... ....+... .... ...+-+......+. .+.+++++
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~-~~~~~l~~va~~l~--------~~~~lLcf 133 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR-GQDDPLPQVADELA--------KESRLLCF 133 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh-CCCccHHHHHHHHH--------hcCCEEEE
Confidence 3499999999999999999999864311 11111000 0000 00111111111211 45679999
Q ss_pred eCCCCCCHHHHHHHHHHhhhc-cCCceEEEEecCCC--------------cCchhHhhhcceeeecCC
Q psy879 103 DEADSMTDGAQQALRRTMEIY-SNTTRFALACNNSE--------------KIIEPIQSRCAMLRYNKL 155 (317)
Q Consensus 103 DE~d~l~~~~~~~ll~~le~~-~~~~~~il~~~~~~--------------~l~~~i~sR~~~i~f~~~ 155 (317)
||++--.....-.|-++++.. ...+++|.|+|.+. ...+.|.++|.++++...
T Consensus 134 DEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 134 DEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred eeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 999887666555555555432 46677888888652 134677999999888776
No 340
>PTZ00202 tuzin; Provisional
Probab=97.99 E-value=0.00041 Score=62.26 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=42.6
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhcCCC--c-eEEEECCCCCCHHHHHHHHHHHH
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSSSGNV--P-NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~~~~~--~-~~ll~G~~G~GKt~la~~la~~l 55 (317)
-|....+++|++...+.|...+.+... | ...|+||+|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 355678999999999999999875433 3 37999999999999999999875
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.99 E-value=6.8e-05 Score=59.43 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=61.1
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCc------eEEecCCCCcChHHHHHHHHHHHhhcccCC-----
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDA------VLELNASNDRGIDTVRNKIKMFAQQKVTLP----- 93 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----- 93 (317)
.+..|. .+.+.||+|+||||+++.++..+........ +..+..........+.+.+... ....++
T Consensus 23 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~ 98 (166)
T cd03223 23 EIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WDDVLSGGEQQ 98 (166)
T ss_pred EECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc--CCCCCCHHHHH
Confidence 344555 6999999999999999999987532222110 1111110000001122222110 000001
Q ss_pred --------CCceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 94 --------PGRHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 94 --------~~~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
..+++++++||... +.......+.+.+.+. ...+|++|++..
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 14689999999985 6677888888888875 255777777753
No 342
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.98 E-value=2.1e-05 Score=64.71 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=40.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc--CCCCC---------CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEE
Q psy879 33 NIIISGPPGVGKTTTILCLARILL--GPSFK---------DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVI 101 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~--~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vli 101 (317)
.++|||+||+||||+|+.++.... ....+ ..+.+++. ....+.+.+.+...... ...+..|+
T Consensus 14 ~~liyG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~--~~~~~~~~d~l~~~~~~-----~~~ydtVV 86 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDD--MPPIQAMVEFYVMQNIQ-----AVKYDNIV 86 (220)
T ss_pred EEEEECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCC--CCCHHHHHHHHHHHHhc-----cccCCEEE
Confidence 499999999999999999874210 11110 11111111 11223343444333222 26789999
Q ss_pred EeCCCCCCH
Q psy879 102 LDEADSMTD 110 (317)
Q Consensus 102 iDE~d~l~~ 110 (317)
||.++.+..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999987644
No 343
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.98 E-value=1.3e-05 Score=65.24 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH--cCCCCCCc--------------eEEecCCC-CcChHHHHH
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL--LGPSFKDA--------------VLELNASN-DRGIDTVRN 80 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l--~~~~~~~~--------------~~~~~~~~-~~~~~~i~~ 80 (317)
+++.+.-.+..|. .+.+.||+|+||||+.+.++..+ ........ +..+.... ......+.+
T Consensus 24 ~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 24 LLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 4444444455665 79999999999999999999875 32211110 00010000 000011222
Q ss_pred HHHHHHhhcccCC-------------CCceeEEEEeCCCC-CCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 81 KIKMFAQQKVTLP-------------PGRHKIVILDEADS-MTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 81 ~~~~~~~~~~~~~-------------~~~~~vliiDE~d~-l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
.+....... .++ ..++.++++||... +.......+.+.+.+... ...+|+++++..
T Consensus 102 ~i~~~~~~~-~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 102 TLMFAAKLR-GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 211110000 011 13678999999975 567778888888876543 456777777754
No 344
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.96 E-value=2e-05 Score=75.19 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
+++++++||+.. +.......+.+.+....++..+|++|+++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL 528 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence 579999999975 56677777888887765556677777775
No 345
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.96 E-value=2.3e-05 Score=74.04 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
+++++++||+.. +..+....+.+.+.+...+..+|+++++.
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 517 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRL 517 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 679999999975 56677777878877665556677777774
No 346
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.96 E-value=1.5e-05 Score=77.83 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=31.7
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+. .+..+....+.+.+.+......+|++|++.+
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~ 661 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 68999999997 4567777778888876655566777887754
No 347
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.95 E-value=2.2e-05 Score=75.27 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=30.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
++.++++||+.. +.++....+.+.+.+......+|++|++.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~ 535 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRL 535 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 578999999985 56666777777777665556677888775
No 348
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.94 E-value=2e-05 Score=65.50 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=32.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+......+|+++++..
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 193 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMD 193 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 689999999975 567778888888877655566777777754
No 349
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=6e-05 Score=62.08 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=33.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhc-cCCceEEEEecCCCcCch
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIY-SNTTRFALACNNSEKIIE 141 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~-~~~~~~il~~~~~~~l~~ 141 (317)
+++++++||.. .+.......+.+.+.+. .....+|+++++...+..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 67999999998 56777788888888754 234567888887665554
No 350
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.92 E-value=3e-05 Score=74.13 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
++.++++||+.. +.+.....+.+.+....+...+|++|++..
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~ 536 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLA 536 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 578999999975 556666667777776545566778887753
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.92 E-value=5.3e-05 Score=61.61 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=53.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccC------------------CCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL------------------PPG 95 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~~~ 95 (317)
++|.||+|+||||++-.+|..+.....+..++..+.......++++..-..+ .-++.. ...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l-~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL-GVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH-TEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh-ccccchhhcchhhHHHHHHHHHHHhhc
Confidence 8999999999999999999887544333333333322211222222111111 001000 002
Q ss_pred ceeEEEEeCCCCCCHH--HHHHHHHHhhhc-cCCceEEEEecC
Q psy879 96 RHKIVILDEADSMTDG--AQQALRRTMEIY-SNTTRFALACNN 135 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~--~~~~ll~~le~~-~~~~~~il~~~~ 135 (317)
+..+|+||=+.....+ ....+.++++.. +..+.+|+.++.
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 3569999998877543 355666666543 445556665544
No 352
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.91 E-value=0.00026 Score=64.08 Aligned_cols=130 Identities=22% Similarity=0.239 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-cChHHHHHHHHHHHhhcccCCCCceeE
Q psy879 21 RLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND-RGIDTVRNKIKMFAQQKVTLPPGRHKI 99 (317)
Q Consensus 21 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~v 99 (317)
.+...+..... .++++||.++||||+++.+.+.+... .+.++..+. .......+....+..... .+...
T Consensus 28 ~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~----~~~~y 97 (398)
T COG1373 28 RLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKE----REKSY 97 (398)
T ss_pred HHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhc----cCCce
Confidence 34444443333 69999999999999998888775332 333333221 122222333333322221 15579
Q ss_pred EEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC----CcCchhHhhhcceeeecCCCHHHHHHH
Q psy879 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS----EKIIEPIQSRCAMLRYNKLTDAQLLSK 163 (317)
Q Consensus 100 liiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~----~~l~~~i~sR~~~i~f~~~~~~~~~~~ 163 (317)
+++||++.... -..++..+.+..+. .+++++... .+....+..|...+.+.|+|-.|....
T Consensus 98 ifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 98 IFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred EEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 99999998764 33344444444333 455555443 356678888888899999999988653
No 353
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.91 E-value=8.1e-05 Score=59.67 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 14 GNEDTVERLKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.|.++++.+...+... ..++++|.+|+|+|||.++..++..+..
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 4778888888888776 4558999999999999999987776643
No 354
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.90 E-value=1.7e-05 Score=63.84 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=30.3
Q ss_pred CceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 95 GRHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
.+++++++||... +.......+.+.+.+.. ....+|+++++.
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999974 56777778888777653 245577777664
No 355
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.89 E-value=2.9e-05 Score=75.77 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+.. +..+....+.+.+.+...+..+|++|++.+
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 653 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS 653 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChH
Confidence 689999999974 667777788888877655566788888764
No 356
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=2.6e-05 Score=63.37 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=31.3
Q ss_pred CceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 95 GRHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 95 ~~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
.+++++++||... +.......+.+.+.+.. ....+|+++++.+
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 3689999999985 56777778878777653 2456777777754
No 357
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.89 E-value=3e-05 Score=63.52 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.1
Q ss_pred CceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 95 GRHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 95 ~~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
.+++++++||.. .+.......+.+.+.+... ...+|+++++..
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 368999999997 5667777778777776532 455777777654
No 358
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.88 E-value=3.3e-05 Score=73.78 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=32.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+.. +..+....+.+.+.+...+..+|++|++.+
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~ 531 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS 531 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChH
Confidence 689999999975 667777788888876655556788888753
No 359
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.88 E-value=3.6e-05 Score=63.39 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=33.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
+++++++||... +.......+.+.+.+......+|++|++...+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 689999999974 56777888888887665556678888776543
No 360
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.88 E-value=7.3e-06 Score=71.05 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
..+++.+.-.++.|. .+.|.||+|+||||+.+.++..+..
T Consensus 18 ~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 18 KTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 445555555566665 6999999999999999999998743
No 361
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.88 E-value=0.00019 Score=68.17 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=58.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC-CCCceEEecCCCCcChHHHHH----------------------------HHH
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPS-FKDAVLELNASNDRGIDTVRN----------------------------KIK 83 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~i~~----------------------------~~~ 83 (317)
..+++|+|||||||++..+...+.... .....+.+.+.+..-...+.+ .++
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 489999999999999999888763311 111122222222111122222 221
Q ss_pred HHHhhcc-cC---CCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 84 MFAQQKV-TL---PPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 84 ~~~~~~~-~~---~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....... .. ..-...++||||+..+.-.....|++.+ ++++++|++...
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 1110000 00 0012369999999999988777777765 577899999865
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00023 Score=63.24 Aligned_cols=27 Identities=44% Similarity=0.655 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPS 59 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~ 59 (317)
.++|.||+|+||||++..+|..+....
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~G 269 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKK 269 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 489999999999999999999875443
No 363
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5e-05 Score=69.77 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=32.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+..++++||+- ++..+....+.+.+.+......++++|++..
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~ 516 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChH
Confidence 46799999997 5677777778888887777777888888754
No 364
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.87 E-value=3.9e-05 Score=73.20 Aligned_cols=42 Identities=7% Similarity=0.187 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+-. +..+....+.+.+........+|+++++..
T Consensus 493 ~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~ 535 (574)
T PRK11160 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLT 535 (574)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChh
Confidence 679999999975 566677778788776655556777777754
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.87 E-value=6.8e-05 Score=69.93 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=33.7
Q ss_pred CceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 95 GRHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
.+++++++||+- .|.++....+++.+.+.-+.+.+|-+++++
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 378999999997 567778899999999865667788887764
No 366
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.87 E-value=3.3e-05 Score=73.64 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+.. +..+....+.+.+........+|++|++..
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~ 511 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchh
Confidence 679999999985 667777778777776544455777777753
No 367
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.87 E-value=0.00018 Score=57.51 Aligned_cols=29 Identities=45% Similarity=0.561 Sum_probs=25.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCC
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSF 60 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~ 60 (317)
|-++|+|+||+||||+++.++++|....+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 45899999999999999999999965444
No 368
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.85 E-value=2.3e-05 Score=65.31 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCCC-CHHHHHHHHHHhhhccCC--ceEEEEecCCC
Q psy879 96 RHKIVILDEADSM-TDGAQQALRRTMEIYSNT--TRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~l-~~~~~~~ll~~le~~~~~--~~~il~~~~~~ 137 (317)
++.++++||.-.. .+.....+.+.+.+.... ..+|++|++.+
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 5789999999865 667788888888766544 35677776643
No 369
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=5.4e-05 Score=62.52 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... +....+..+.+++.+......+|+++++..
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~ 190 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE 190 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 689999999974 667788888888887655566777776644
No 370
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00044 Score=63.04 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=52.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc--CCCCCCceEEecCCCCcChHHHHHHHHHHHhhccc------------CCCCcee
Q psy879 33 NIIISGPPGVGKTTTILCLARILL--GPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVT------------LPPGRHK 98 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~ 98 (317)
.++|.||+|+||||++..+|..+. .......++..+........+++..-.. ...++. .....+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~-~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKI-MGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHH-hCCceEccCCHHhHHHHHHHhCCCC
Confidence 489999999999999999998764 2222233333322110011111110000 000000 0013578
Q ss_pred EEEEeCCCCCCH--HHHHHHHHHhhh--ccCCceEEEEecCC
Q psy879 99 IVILDEADSMTD--GAQQALRRTMEI--YSNTTRFALACNNS 136 (317)
Q Consensus 99 vliiDE~d~l~~--~~~~~ll~~le~--~~~~~~~il~~~~~ 136 (317)
+||||-+..... .....|.++++. .+..+.+|+.++..
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 999999877543 345566677662 22344556555443
No 371
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.84 E-value=2.1e-05 Score=68.92 Aligned_cols=195 Identities=19% Similarity=0.206 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccC
Q psy879 13 VGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL 92 (317)
Q Consensus 13 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 92 (317)
+|...+++.+.-.+..|. -+.|.||+||||||+.+.+|... .++.+. +.++..+..+..--+..++.++|....+
T Consensus 15 yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe-~p~~G~--I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 15 FGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFE-QPSSGE--ILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred cCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCC-CCCCce--EEECCEECCCCChhhcccceeecCcccC
Confidence 344444555555666776 47799999999999999999864 333332 2233222111111112233333332111
Q ss_pred CCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceee-ecCCCHHHHHHHHHHHHHHc
Q psy879 93 PPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLR-YNKLTDAQLLSKVIEICEKE 171 (317)
Q Consensus 93 ~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~-f~~~~~~~~~~~l~~~~~~~ 171 (317)
|+ |+-. + |+- --+. -..+..+++.+.+.+.++.-
T Consensus 90 PH-------------ltV~---------~----NVa-------------------fGLk~~~~~~~~~i~~rv~e~L~lV 124 (352)
T COG3842 90 PH-------------MTVE---------E----NVA-------------------FGLKVRKKLKKAEIKARVEEALELV 124 (352)
T ss_pred CC-------------CcHH---------H----Hhh-------------------hhhhhcCCCCHHHHHHHHHHHHHHc
Confidence 10 1100 0 000 0011 12356677777777776644
Q ss_pred CCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHH----HHHHHHHH------hcCCHHHHH
Q psy879 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA----VKEMLLNC------VEGNMKDSY 241 (317)
Q Consensus 172 ~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~----i~~l~~~~------~~~~~~~~~ 241 (317)
+ +++-+..+-.+.|+| .++-..+.++.+...+.+-.|+-..+++...... +.++.+.+ ..+|..+|+
T Consensus 125 ~--L~~~~~R~p~qLSGG-QqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl 201 (352)
T COG3842 125 G--LEGFADRKPHQLSGG-QQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL 201 (352)
T ss_pred C--chhhhhhChhhhChH-HHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 4 434444444555555 6777777777777666666666555555433333 33444444 467899999
Q ss_pred HHHHHH--HHcC-----CCHHHHHHH
Q psy879 242 KIIHHL--YKLG-----YAPEDIIGN 260 (317)
Q Consensus 242 ~~~~~l--~~~~-----~~~~~i~~~ 260 (317)
.+-+.. +..| -+|.+++..
T Consensus 202 ~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 202 AMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred hhccceEEccCCceeecCCHHHHhhC
Confidence 988776 3443 377777755
No 372
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.84 E-value=3.2e-05 Score=75.74 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.+.||+|+||||+++.++..+.
T Consensus 494 vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 494 LIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444444455565 799999999999999999998753
No 373
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.84 E-value=4.4e-05 Score=74.47 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.+.||+|+||||+++.++....
T Consensus 468 vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 468 ILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4444444455565 799999999999999999999754
No 374
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.83 E-value=0.00011 Score=60.49 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
+.++||||+|||+++..++......
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~ 39 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ 39 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999876433
No 375
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.83 E-value=4.6e-05 Score=63.85 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=31.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+.+.+... ...+|++|++.+
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 679999999974 567778888888876543 456777777654
No 376
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.83 E-value=0.00017 Score=70.25 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=59.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh-----------HHHHHHHHHHHhhccc---CCCCcee
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI-----------DTVRNKIKMFAQQKVT---LPPGRHK 98 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~~~---~~~~~~~ 98 (317)
..+++|+|||||||+++++...+........+.-..++ .... ..+...+......... .......
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApT-g~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPT-GRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCc-hHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 59999999999999999999877433211222222222 1111 1222222211110000 0013467
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 99 vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
++||||+..+.......|++.+ +..+.+|++...
T Consensus 419 llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~ 452 (720)
T TIGR01448 419 LLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT 452 (720)
T ss_pred EEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence 9999999999988887777754 466888888754
No 377
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.83 E-value=0.00011 Score=71.71 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----------CcChHHHHHHHHHH
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN----------DRGIDTVRNKIKMF 85 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~ 85 (317)
++..+.+...+.+++ ..++.|++||||||+++++...+...+ ..+.-+.++. ......+...+..+
T Consensus 355 ~~Q~~Av~~i~~s~~--~~il~G~aGTGKTtll~~i~~~~~~~g--~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~ 430 (744)
T TIGR02768 355 EEQYEAVRHVTGSGD--IAVVVGRAGTGKSTMLKAAREAWEAAG--YRVIGAALSGKAAEGLQAESGIESRTLASLEYAW 430 (744)
T ss_pred HHHHHHHHHHhcCCC--EEEEEecCCCCHHHHHHHHHHHHHhCC--CeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhh
Confidence 444445555554333 589999999999999999988764322 2233332221 00111111111111
Q ss_pred HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEec
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 134 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~ 134 (317)
... ........++||||+..+.......|++.... ..+.+|++..
T Consensus 431 ~~~--~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD 475 (744)
T TIGR02768 431 ANG--RDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGD 475 (744)
T ss_pred ccC--cccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 111 11124678999999999998888888776553 4567888774
No 378
>KOG0055|consensus
Probab=97.83 E-value=4.1e-05 Score=76.18 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+.-.++.|+ .+-|.||+||||||++..+-+..
T Consensus 1006 l~~l~l~i~~Gq--TvALVG~SGsGKSTvI~LLeRfY 1040 (1228)
T KOG0055|consen 1006 LNNLSLSIRAGQ--TVALVGPSGSGKSTVISLLERFY 1040 (1228)
T ss_pred hcCCcEEecCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 333444455565 69999999999999999998874
No 379
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.82 E-value=8.8e-05 Score=60.71 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=30.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+.. ....+|+++++..
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 679999999975 56777888888887642 3456777777654
No 380
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.82 E-value=0.0014 Score=57.77 Aligned_cols=40 Identities=35% Similarity=0.283 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
...+.+.|..+++.+. +++++|++|+||||+++++...+.
T Consensus 146 ~~~~~~~L~~~v~~~~--nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 146 EKKIKEFLEHAVISKK--NIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred hHHHHHHHHHHHHcCC--cEEEECCCCCCHHHHHHHHHhhCC
Confidence 3345566777777766 899999999999999999999873
No 381
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.82 E-value=8.2e-05 Score=66.49 Aligned_cols=87 Identities=24% Similarity=0.293 Sum_probs=51.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH--cCCCCCCceEEecCCCCcChHHHHHHHH----------------HHHhhc--ccC
Q psy879 33 NIIISGPPGVGKTTTILCLARIL--LGPSFKDAVLELNASNDRGIDTVRNKIK----------------MFAQQK--VTL 92 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------------~~~~~~--~~~ 92 (317)
.+++.|.||||||.++..++..+ ........++..|... ...++..+. .+.... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l---~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL---RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH---HHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 38999999999999999999998 3333333333333321 111111111 111100 001
Q ss_pred CCCceeEEEEeCCCCCCHH--------HHHHHHHHhhh
Q psy879 93 PPGRHKIVILDEADSMTDG--------AQQALRRTMEI 122 (317)
Q Consensus 93 ~~~~~~vliiDE~d~l~~~--------~~~~ll~~le~ 122 (317)
......+||+||++.+... ..+.|..++..
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 2256889999999999873 24667777776
No 382
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.81 E-value=7e-05 Score=65.66 Aligned_cols=115 Identities=23% Similarity=0.301 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEE-ecCCCCcChHHHHHHHHHHHhhcccCCCCce
Q psy879 20 ERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLE-LNASNDRGIDTVRNKIKMFAQQKVTLPPGRH 97 (317)
Q Consensus 20 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 97 (317)
..++.++++-.-.+ ++|||||+||||..+..+.+.+.|. ++. .|..+.... .| -.+.
T Consensus 250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~Gk-----ViSf~Ns~ShFWL------------qP----L~d~ 308 (432)
T PF00519_consen 250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK-----VISFVNSKSHFWL------------QP----LADA 308 (432)
T ss_dssp HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSE-----EE-GGGTTSCGGG------------GG----GCT-
T ss_pred HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCE-----EEEecCCCCcccc------------cc----hhcC
Confidence 34555665422234 9999999999999999999998543 333 333222211 11 2578
Q ss_pred eEEEEeCCCCCCHHHHH-HHHHHhhhcc-------------CCceEEEEecCC---CcCchhHhhhcceeeecCC
Q psy879 98 KIVILDEADSMTDGAQQ-ALRRTMEIYS-------------NTTRFALACNNS---EKIIEPIQSRCAMLRYNKL 155 (317)
Q Consensus 98 ~vliiDE~d~l~~~~~~-~ll~~le~~~-------------~~~~~il~~~~~---~~l~~~i~sR~~~i~f~~~ 155 (317)
++.+||++..-.=+-.+ -|...++..+ .-..+++|||.. +.-..-+.||...++|+.+
T Consensus 309 Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n~ 383 (432)
T PF00519_consen 309 KIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPNP 383 (432)
T ss_dssp SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S-
T ss_pred cEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcCCc
Confidence 89999998543222222 2344444211 112367777753 3456888999999999854
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=97.81 E-value=0.00027 Score=62.16 Aligned_cols=26 Identities=46% Similarity=0.469 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
.++|.||+|+||||++..++..+...
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999887543
No 384
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.81 E-value=0.00013 Score=55.39 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
+++++||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 6899999999999999999888753
No 385
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.81 E-value=3.2e-05 Score=75.65 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.+.||+|+||||+++.++....
T Consensus 489 iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 489 ILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred ceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence 3444444455565 799999999999999999998753
No 386
>PLN03232 ABC transporter C family member; Provisional
Probab=97.81 E-value=2.2e-05 Score=82.43 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+++.+.-.++.|. .+.+.|++|+||||+++.+.+.+.
T Consensus 1250 ~vL~~isl~I~~Ge--kvaIVG~SGSGKSTL~~lL~rl~~ 1287 (1495)
T PLN03232 1250 PVLHGLSFFVSPSE--KVGVVGRTGAGKSSMLNALFRIVE 1287 (1495)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCc
Confidence 35555555566666 799999999999999999999753
No 387
>PLN03130 ABC transporter C family member; Provisional
Probab=97.81 E-value=2.5e-05 Score=82.35 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.|.|++|+||||+++.+.+.+.
T Consensus 1254 VL~~is~~I~~Ge--kVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1254 VLHGLSFEISPSE--KVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCcCC
Confidence 4555555566666 799999999999999999999753
No 388
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.80 E-value=6.9e-05 Score=62.55 Aligned_cols=43 Identities=12% Similarity=0.336 Sum_probs=31.7
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc--CCceEEEEecCCCc
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS--NTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~--~~~~~il~~~~~~~ 138 (317)
++.++++||.. .|.......+.+.+.+.. ....+|+++++.+.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence 67999999997 466777888888887653 24567777777544
No 389
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.80 E-value=7.6e-05 Score=61.47 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=30.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+++.+.. ....+|++|++..
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 678999999975 56777888888887653 2455777776643
No 390
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.79 E-value=0.00046 Score=57.95 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=25.7
Q ss_pred HHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHHH
Q psy879 22 LKVFSSSGNVPN--IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 22 l~~~l~~~~~~~--~ll~G~~G~GKt~la~~la~~l 55 (317)
|-..+.+|-++. ++++|+||+|||+++..++...
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 445555554333 8999999999999999997654
No 391
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.79 E-value=0.00029 Score=66.79 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 96 RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
...+|||||+..+.......|++.+ ++.+.+|++...
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 3579999999999988777777665 567889998765
No 392
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.00015 Score=63.37 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=62.1
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCH----HHHHH
Q psy879 152 YNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHP----LAVKE 227 (317)
Q Consensus 152 f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~----~~i~~ 227 (317)
....+.+++.+.+...++.-++ +..++......+|.-|+-+.+.++.+...+..-.|+-..-++.... ..+.+
T Consensus 102 ~~~~~k~ei~~rV~eva~~L~l---~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 102 LRGVPKAEIDKRVKEVAKLLGL---EHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred hCCCchHHHHHHHHHHHHHcCC---hhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence 3456788999999998887665 4556666666667788888888877765554433333222222111 12333
Q ss_pred HHHHH------hcCCHHHHHHHHHHH--HHcC-----CCHHHHHHH
Q psy879 228 MLLNC------VEGNMKDSYKIIHHL--YKLG-----YAPEDIIGN 260 (317)
Q Consensus 228 l~~~~------~~~~~~~~~~~~~~l--~~~~-----~~~~~i~~~ 260 (317)
+.+.+ ..+|..+|+.+-+.. +..| -+|.+++..
T Consensus 179 lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 33322 246788888876554 2233 366666655
No 393
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=7e-05 Score=62.91 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=33.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
+++++++||... +.......+.+.+.+......+|+++++...+
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 200 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI 200 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 678999999974 66777888888887765556688888776544
No 394
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.78 E-value=0.001 Score=58.20 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=37.1
Q ss_pred eeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHH
Q psy879 149 MLRYNKLTDAQLLSKVIEICEKENI---SHTNDGLEAIVFTAQGDMRQAL 195 (317)
Q Consensus 149 ~i~f~~~~~~~~~~~l~~~~~~~~~---~i~~~~~~~l~~~~~gd~r~~i 195 (317)
.++.++++.+|....+.......-+ ..++...+.+...++|++|+..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 7899999999999999987765333 2345667788888899999764
No 395
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=5.5e-05 Score=64.97 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=32.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~~l 139 (317)
+++++++||... +.......+.+++.+... ...+|++|++...+
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~ 206 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA 206 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH
Confidence 679999999975 566778888888776532 45677888776544
No 396
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.77 E-value=6.9e-05 Score=61.88 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+... ...+|++|++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 679999999974 667778888888876543 456777777643
No 397
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.77 E-value=6.2e-05 Score=65.79 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=31.0
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||.. .|.+.....+.+.+.+... ...+|++|++.+
T Consensus 142 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 68999999997 4677778888888876542 455777777643
No 398
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.77 E-value=5.7e-05 Score=73.83 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.+.||+|+||||+++.+++.+.
T Consensus 496 vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 496 VLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccC
Confidence 4444444455665 699999999999999999999764
No 399
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.77 E-value=0.00013 Score=59.35 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=66.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 113 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~ 113 (317)
++|.|+-|+|||+..+.+........ ... ....+..... ...-++.+||++.+.+...
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~--~~~kd~~~~l-------------~~~~iveldEl~~~~k~~~ 112 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS-------IND--FDDKDFLEQL-------------QGKWIVELDELDGLSKKDV 112 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc-------ccc--CCCcHHHHHH-------------HHhHheeHHHHhhcchhhH
Confidence 89999999999999999966532211 111 1112222211 1345899999999998888
Q ss_pred HHHHHHhh---------------hccCCceEEEEecCCCcC-chhHhhhcceeeecC
Q psy879 114 QALRRTME---------------IYSNTTRFALACNNSEKI-IEPIQSRCAMLRYNK 154 (317)
Q Consensus 114 ~~ll~~le---------------~~~~~~~~il~~~~~~~l-~~~i~sR~~~i~f~~ 154 (317)
+.|..++. +.+..++||.+||..+-+ +++=-+|+.++.+..
T Consensus 113 ~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 113 EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 88877775 335667788889886643 345567788887776
No 400
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.77 E-value=0.00034 Score=64.55 Aligned_cols=170 Identities=18% Similarity=0.153 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCcee
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHK 98 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 98 (317)
++.+.--+..|. .+-|.|++||||||+++.++..+. +..+...+..... .......+. .. ....
T Consensus 307 v~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~-~~~~~~~~~----~r--------~~~Q 370 (539)
T COG1123 307 VDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDL-DLTGGELRR----LR--------RRIQ 370 (539)
T ss_pred eeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCccc-ccccchhhh----hh--------hheE
Confidence 333444455666 699999999999999999999753 3333323222211 111111111 00 2445
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeec-CCCHHHHHHHHHHHHHHcCCCCCH
Q psy879 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYN-KLTDAQLLSKVIEICEKENISHTN 177 (317)
Q Consensus 99 vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~-~~~~~~~~~~l~~~~~~~~~~i~~ 177 (317)
++|-|-...|++.. .+..++.+|- .+. .....+..+.+...+..- .+++
T Consensus 371 mvFQdp~~SLnPr~--tV~~~i~epL--------------------------~~~~~~~~~~~~~rv~~ll~~V--gL~~ 420 (539)
T COG1123 371 MVFQDPYSSLNPRM--TVGDILAEPL--------------------------RIHGGGSGAERRARVAELLELV--GLPP 420 (539)
T ss_pred EEEeCcccccCccc--cHHHHHHhHH--------------------------hhhcccchHHHHHHHHHHHHHc--CCCH
Confidence 67777666666531 1222222211 111 122344444444444433 4557
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhc
Q psy879 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234 (317)
Q Consensus 178 ~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~ 234 (317)
+.+.......+|.-|+-+.+.++.+...+.+..|+...+++.+....+.+++..+..
T Consensus 421 ~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 421 EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence 777777777778899999999999999999989888888888888777777776653
No 401
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.76 E-value=7e-05 Score=62.31 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=32.6
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
++.++++||... +.......+.+.+.+......+|+++++...
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (221)
T cd03244 157 KSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDT 200 (221)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 678999999974 5677788888888765555667788877543
No 402
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=6.1e-05 Score=65.02 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=33.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~~l 139 (317)
+++++++||... +....+..+.+.+.+... .+.+|++|++...+
T Consensus 158 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~ 204 (279)
T PRK13635 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA 204 (279)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 689999999975 667778888888876543 46677788776543
No 403
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.76 E-value=3.3e-05 Score=62.85 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred ceeEEEEeCCCCCCHHHH------HHHHHHhhh-ccCCceEEEEecCCCcCchhHhhhcce-eeecCC
Q psy879 96 RHKIVILDEADSMTDGAQ------QALRRTMEI-YSNTTRFALACNNSEKIIEPIQSRCAM-LRYNKL 155 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~------~~ll~~le~-~~~~~~~il~~~~~~~l~~~i~sR~~~-i~f~~~ 155 (317)
...++||||+....+... ....+.+.. .+...-++++|.++..+.+.++..+.. +++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 578999999998754321 233355554 345567999999999999999887766 555544
No 404
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.76 E-value=6.6e-05 Score=63.19 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
+++++++||... +.......+.+.+.+......+|+++++...+
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 200 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV 200 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 679999999975 56777888888887665556688888776543
No 405
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.76 E-value=6.1e-05 Score=62.44 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+.. ....+|++|++.+
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 679999999975 56677778888777653 2455777887743
No 406
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.75 E-value=6.7e-05 Score=65.51 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... |.+.....+.+.+.+......+|++|+..+
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~ 193 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ 193 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 689999999974 677788888888887655566677776643
No 407
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.74 E-value=5.1e-05 Score=66.38 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=31.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||... |.+..+..+++++.+... ...+|++|+..+
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 689999999974 677888888888876543 455777776644
No 408
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.74 E-value=0.00024 Score=57.76 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 96 RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
...+||+||+.++++..... ++...+.++.+|++.+.
T Consensus 119 ~~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEELKM---ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp -SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEEEEE--
T ss_pred cceEEEEecccCCCHHHHHH---HHcccCCCcEEEEecCc
Confidence 36899999999999865544 45566688899998765
No 409
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00036 Score=62.11 Aligned_cols=23 Identities=48% Similarity=0.556 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||+|+||||++..++..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999875
No 410
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=7.5e-05 Score=64.46 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=35.8
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCCcCchhHhhhcce
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSEKIIEPIQSRCAM 149 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~~l~~~i~sR~~~ 149 (317)
+++++++||... |.......+.+.+.+... ...+|++|++...+ . .-.|..+
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~-~~dri~~ 212 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-A-LSDRVLV 212 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEE
Confidence 689999999975 566778888888776532 46678888776544 2 3444433
No 411
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=6.9e-05 Score=62.99 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=30.8
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.. .+.......+.+.+.+... ...+|+++++.+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 67999999997 4567778888888876532 456777777644
No 412
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.73 E-value=6.8e-05 Score=62.26 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
++.++++||... +.......+.+.+.+.. ....+|++|++..
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 689999999975 56777788888887653 3456777777653
No 413
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.73 E-value=5.5e-05 Score=62.60 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=30.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+.. ....+|++|++..
T Consensus 155 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 689999999975 56777888888887653 2455777776643
No 414
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00095 Score=61.68 Aligned_cols=24 Identities=50% Similarity=0.659 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.||+|+||||++..++..+.
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998653
No 415
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.73 E-value=7.4e-05 Score=70.86 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=30.4
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||+- .+..+....+.+.+.+.. ....+|+++++..
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 68999999997 566777777878777653 3445677777753
No 416
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.73 E-value=0.00024 Score=56.82 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=61.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC----------------------C------CcC---hHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS----------------------N------DRG---IDTVRNK 81 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~----------------------~------~~~---~~~i~~~ 81 (317)
.+.+||++|.||||+|..++-...+......++.+-.. . ... ....++.
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~ 103 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREG 103 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHH
Confidence 59999999999999999999766543332211111000 0 000 0111112
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHH---HHHHHHHHhhhccCCceEEEEecCC
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDG---AQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~---~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
+..... ....+.+.+||+||+-....- ..+.++++++..|+.+-+|+|..+.
T Consensus 104 ~~~a~~---~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 104 WEEAKR---MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHH---HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 222111 112367899999999765432 2456788888889999999998764
No 417
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=8e-05 Score=61.46 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=31.0
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||.. .+.......+.+.+.+.. ....+|+++++..
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 67999999998 566777888888887653 3455777776643
No 418
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.72 E-value=3.5e-05 Score=62.52 Aligned_cols=42 Identities=10% Similarity=0.298 Sum_probs=30.3
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||.. .|.......+.+++.+... ...+|+++++.+
T Consensus 145 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 145 RPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 67999999997 4567777888888776532 456777776643
No 419
>KOG0055|consensus
Probab=97.72 E-value=0.00012 Score=72.94 Aligned_cols=39 Identities=33% Similarity=0.594 Sum_probs=28.5
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEe
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLEL 67 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~ 67 (317)
+..|. .+.+.||+||||||++..+.+.. .+..+..+++.
T Consensus 376 i~~G~--~valVG~SGsGKST~i~LL~Rfy-dP~~G~V~idG 414 (1228)
T KOG0055|consen 376 IPSGQ--TVALVGPSGSGKSTLIQLLARFY-DPTSGEVLIDG 414 (1228)
T ss_pred eCCCC--EEEEECCCCCCHHHHHHHHHHhc-CCCCceEEEcC
Confidence 44454 59999999999999999999974 54444444443
No 420
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.72 E-value=0.00025 Score=56.63 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=30.2
Q ss_pred eeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 97 HKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 97 ~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
++++++||... +.......+.+.+.+.. ....+|+++++.+
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 89999999975 56777777777777543 3456777887754
No 421
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.72 E-value=0.00021 Score=64.06 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----Cc-ChHHHHHHHHHHHh--
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN----DR-GIDTVRNKIKMFAQ-- 87 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~----~~-~~~~i~~~~~~~~~-- 87 (317)
|..+...+...+......++++.||.|||||++.+++...+.... ..+.-..... .. +-..+...++.-..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~--~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~ 83 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRG--KKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNN 83 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcccc--ceEEEecchHHHHHhccCCcchHHhcCcccccc
Confidence 556666666666655555699999999999999999999874321 1222111110 01 11111111110000
Q ss_pred --hcc--------cCCCCceeEEEEeCCCCCCHHHHHHHHHHhh
Q psy879 88 --QKV--------TLPPGRHKIVILDEADSMTDGAQQALRRTME 121 (317)
Q Consensus 88 --~~~--------~~~~~~~~vliiDE~d~l~~~~~~~ll~~le 121 (317)
... .-.-..-+++||||+..+.......+.+.|.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 84 EKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred ccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhh
Confidence 000 0000245799999999999988777655554
No 422
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.72 E-value=6e-05 Score=61.99 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+++.+.. ....+|+++++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999975 56777888888887653 2456777777753
No 423
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.71 E-value=8.9e-05 Score=61.31 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=31.0
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||.. .|.......+.+.+.+... ...+|+++++..
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 68999999997 5677778888888876533 455777777643
No 424
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=8.1e-05 Score=62.61 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=33.0
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
+++++++||.. .|.......+.+.+.+......+|+++++...+
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~ 199 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI 199 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 68999999997 567777888888887655455677777776543
No 425
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.71 E-value=8.7e-05 Score=61.39 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=30.7
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
+++++++||.. .+.+.....+.+.+.+.. ....+|++|++.
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 68999999997 566777888888887653 345577777764
No 426
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.70 E-value=0.00029 Score=70.12 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----------CcChHHHHHHHHHH
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN----------DRGIDTVRNKIKMF 85 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~ 85 (317)
++..+.+..++..+. ..++.|++||||||+.+.+...+... +..++-+.++. ......+...+..+
T Consensus 349 ~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~ 424 (988)
T PRK13889 349 GEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAA--GYEVRGAALSGIAAENLEGGSGIASRTIASLEHGW 424 (988)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhh
Confidence 334444555554333 57899999999999998887765322 22233332221 11112222222111
Q ss_pred HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
.... .......++||||+..+.......|++..+. ..+.+|++...
T Consensus 425 ~~~~--~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~ 470 (988)
T PRK13889 425 GQGR--DLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDP 470 (988)
T ss_pred cccc--cccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence 1111 1124567999999999999888888877663 45778888754
No 427
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.70 E-value=0.00026 Score=59.24 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++++||||+|||+++..++..+.
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999866665543
No 428
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=7.3e-05 Score=62.55 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+++++++||.. .|.......+.+.+........+|++|++...
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST 200 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 68999999998 56777788888888766555667888877544
No 429
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.70 E-value=0.00012 Score=59.76 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=31.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhc-cCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIY-SNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~-~~~~~~il~~~~~~~ 138 (317)
+++++++||... |.......+.+.+.+. .....+|++++++..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence 689999999974 5677778888888754 234567888877643
No 430
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=8.4e-05 Score=62.40 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=31.4
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.. .+.......+.+++.+... ...+|+++++.+
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 67899999997 5677788888888876532 456777777644
No 431
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.70 E-value=0.00019 Score=57.89 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++++||||+|||+++..++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999887653
No 432
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.70 E-value=6.3e-05 Score=62.61 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=30.2
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
+++++++||.. .+.......+.+.+.+.. ....+|+++++.
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67999999997 466777888888887654 345677777664
No 433
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.69 E-value=4.5e-05 Score=72.69 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+++.+.-.++.|. .+.+.||+|+||||+++.+.+....
T Consensus 343 ~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 343 PVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCC
Confidence 34444544455665 6889999999999999999997643
No 434
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.69 E-value=0.00022 Score=56.20 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=60.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC-Cc-------------------------Ch----HHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-DR-------------------------GI----DTVRNKI 82 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~~-------------------------~~----~~i~~~~ 82 (317)
-+.+|+++|.||||+|..++-...+...+..++.+-... .. .. ...++.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 478888899999999999997765544332211110000 00 00 1111122
Q ss_pred HHHHhhcccCCCCceeEEEEeCCCCCCHH---HHHHHHHHhhhccCCceEEEEecCC
Q psy879 83 KMFAQQKVTLPPGRHKIVILDEADSMTDG---AQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 83 ~~~~~~~~~~~~~~~~vliiDE~d~l~~~---~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
..... ....+.+.+||+||+.....- ..+.++++++..|+.+-+|+|..+.
T Consensus 87 ~~a~~---~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 87 QHAKE---MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHH---HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22111 112367899999999744322 1346778888889999999998764
No 435
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.69 E-value=8.2e-05 Score=62.65 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=33.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
+++++++||... |.......+.+.+.+......+|+++++.+.+
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~ 201 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI 201 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 678999999974 67777888888887665456678888776543
No 436
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.69 E-value=0.00011 Score=61.08 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=32.8
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||.. .+.......+.+.+.+......+|++|++.+
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 200 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS 200 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 68999999997 4677788888888887655566778887755
No 437
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.69 E-value=0.00072 Score=59.14 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHh---cC--CCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH-HHHHHHh
Q psy879 15 NEDTVERLKVFSS---SG--NVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN-KIKMFAQ 87 (317)
Q Consensus 15 ~~~~~~~l~~~l~---~~--~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 87 (317)
.++..+.+..++. .+ .... ++++|+.|+|||++...+...+ +..... ... ........+ ....
T Consensus 54 d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~~~~----~~~--~~~~~~~~~~~f~~--- 123 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDYATT----AVA--SLKMNEFQEHRFGL--- 123 (304)
T ss_pred CHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chhhcc----CCc--chhhhhccCCCchh---
Confidence 3445555555532 22 2222 8999999999999999887765 432100 000 000111000 0000
Q ss_pred hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhh--------------hccCCceEEEEecCCCcC---chhHhhhccee
Q psy879 88 QKVTLPPGRHKIVILDEADSMTDGAQQALRRTME--------------IYSNTTRFALACNNSEKI---IEPIQSRCAML 150 (317)
Q Consensus 88 ~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le--------------~~~~~~~~il~~~~~~~l---~~~i~sR~~~i 150 (317)
. .-.++++++.||++.-.....+.|..+.. +...+..+|++||....+ ..++.+|+.+|
T Consensus 124 a----~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~~vi 199 (304)
T TIGR01613 124 A----RLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRRLRII 199 (304)
T ss_pred h----hhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheeeEEEE
Confidence 0 01367899999997532222333333332 123456689999986544 47889999999
Q ss_pred eecC
Q psy879 151 RYNK 154 (317)
Q Consensus 151 ~f~~ 154 (317)
.|+.
T Consensus 200 ~f~~ 203 (304)
T TIGR01613 200 PFTK 203 (304)
T ss_pred eccC
Confidence 9874
No 438
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.68 E-value=0.0012 Score=53.08 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
++++||||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999986
No 439
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.68 E-value=0.00012 Score=60.02 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=31.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCCCc
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~~~ 138 (317)
+++++++||.. .+.......+.+++.+.. ....+|++|++...
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 68999999997 567788888888887653 34567777776543
No 440
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.68 E-value=6.3e-05 Score=63.10 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=30.8
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+.+.+... ...+|+++++.+
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 689999999974 567777888887765532 456777887754
No 441
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.68 E-value=8.2e-05 Score=62.14 Aligned_cols=43 Identities=14% Similarity=0.304 Sum_probs=33.1
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
++.++++||.. .+.......+.+++.+......+|++|++...
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 211 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 67999999998 56777888888888765555667888877543
No 442
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.67 E-value=3.7e-05 Score=57.34 Aligned_cols=22 Identities=64% Similarity=0.857 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
+++.|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 443
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.67 E-value=9.1e-05 Score=61.28 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=31.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||... +....+..+.+.+.+... .+.+|+++++..
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 678999999975 567778888888876532 456777777643
No 444
>PRK14532 adenylate kinase; Provisional
Probab=97.67 E-value=0.002 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
++++.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999985
No 445
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=7.8e-05 Score=61.65 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=30.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+++.+.. ....+|+++++..
T Consensus 148 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 148 EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 689999999975 56777888888887653 2455777777643
No 446
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00053 Score=58.80 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhc
Q psy879 156 TDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234 (317)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~ 234 (317)
+.+|..+...+.++.-|+.-++..+..+....+|.+|+-+-+.-..+...+.+-.|+.-.+++......+.++++.+.+
T Consensus 123 ~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 123 SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4566667777777766776555677888878788899988887777778888888887777777777778888777765
No 447
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.66 E-value=0.0014 Score=55.60 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=101.2
Q ss_pred CCCCcccCCHHH---HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH------
Q psy879 7 QTFSDIVGNEDT---VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT------ 77 (317)
Q Consensus 7 ~~~~~~~g~~~~---~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~------ 77 (317)
+...++++-... ...+..+-+.|. ...+||-+|.|||+.++.+++.- +....+..+++.. ....
T Consensus 69 ~~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~----p~~~l~~~~p~~~-a~~~i~~i~~ 141 (297)
T COG2842 69 KLAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN----PNALLIEADPSYT-ALVLILIICA 141 (297)
T ss_pred cccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC----ccceeecCChhhH-HHHHHHHHHH
Confidence 356677776554 445566666666 68999999999999999988762 1222222222210 0001
Q ss_pred ---------HHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC--------CcCc
Q psy879 78 ---------VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS--------EKII 140 (317)
Q Consensus 78 ---------i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~--------~~l~ 140 (317)
+.+.+....... ....+.+++||++.|..++.+.+.+..++.+ +-++++.++. +...
T Consensus 142 ~~~~~~~~~~~d~~~~~~~~l----~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~vLvG~prL~~~l~~~~~~~ 215 (297)
T COG2842 142 AAFGATDGTINDLTERLMIRL----RDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVVLVGMPRLFKVLRRPEDEL 215 (297)
T ss_pred HHhcccchhHHHHHHHHHHHH----ccCcceeeeehhhccChHHHHHHHHHHHhhC--ceEEEecChHHHhccccchHHH
Confidence 111111111110 2567899999999999999999999888654 3456665543 1122
Q ss_pred hhHhhhcce---eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q psy879 141 EPIQSRCAM---LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201 (317)
Q Consensus 141 ~~i~sR~~~---i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~ 201 (317)
..+.||..+ +.-.-++.+++..+...... ..++..+..+.....|.+|..-..+..+
T Consensus 216 ~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~ 275 (297)
T COG2842 216 SRLYSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGA 275 (297)
T ss_pred HHHHHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhh
Confidence 333344333 11122222333333333221 1456667777788889888877776543
No 448
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=6.2e-05 Score=61.70 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=24.9
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+..|. .+.+.||+|+||||+++.++..+.
T Consensus 29 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 29 VVKPGE--MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EECCCc--EEEEECCCCCCHHHHHHHhcccCC
Confidence 344555 699999999999999999999753
No 449
>PRK10908 cell division protein FtsE; Provisional
Probab=97.66 E-value=0.0001 Score=61.43 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... |....+..+.+.+.+.. ....+|++|++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 155 KPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 678999999975 56677788888777653 3456777777643
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.65 E-value=0.00093 Score=58.51 Aligned_cols=36 Identities=42% Similarity=0.479 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+.+.|...++.|. ++++.||+|+||||++++++..+
T Consensus 133 ~~~~l~~~v~~~~--~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 133 IKEFLRLAIASRK--NIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHHHHHHHhhCCC--EEEEECCCCCCHHHHHHHHHccC
Confidence 3344556666676 89999999999999999999876
No 451
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00018 Score=65.51 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+++.+.-.++.|. ++-+.|++||||||+++.+++...
T Consensus 352 ~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 352 KALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred chhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccC
Confidence 57777777788888 899999999999999999998753
No 452
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.65 E-value=7.6e-05 Score=66.15 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=30.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++|+||.. .|.+..+..+++++.+... ...+|++|++.+
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 68999999997 4677888888888876533 455667766543
No 453
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.65 E-value=0.00018 Score=60.99 Aligned_cols=23 Identities=52% Similarity=0.693 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 454
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.64 E-value=0.006 Score=55.02 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=61.0
Q ss_pred ceeEEEEeCCCCCCH--------HHHHHHHHHhhhcc----CCceEEEEecCCC--------cCchhHhhhcc-------
Q psy879 96 RHKIVILDEADSMTD--------GAQQALRRTMEIYS----NTTRFALACNNSE--------KIIEPIQSRCA------- 148 (317)
Q Consensus 96 ~~~vliiDE~d~l~~--------~~~~~ll~~le~~~----~~~~~il~~~~~~--------~l~~~i~sR~~------- 148 (317)
..-+|++||++.+.+ ..-+.|++++++.. ++..++++.++.. .-.+++.+|..
T Consensus 239 ~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~ 318 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADD 318 (416)
T ss_pred CceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccc
Confidence 356899999997731 24577888887532 4566777765531 23678877753
Q ss_pred --------eeeecCCCHHHHHHHHHHHHHH------cCCCCCHHHHHHHHHhc
Q psy879 149 --------MLRYNKLTDAQLLSKVIEICEK------ENISHTNDGLEAIVFTA 187 (317)
Q Consensus 149 --------~i~f~~~~~~~~~~~l~~~~~~------~~~~i~~~~~~~l~~~~ 187 (317)
+++..+++.+++...+.+...- ....++++.+..+++.+
T Consensus 319 ~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 319 GFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred cccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 3888999999999877765321 12356777777766554
No 455
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.64 E-value=6.4e-05 Score=78.95 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.+.-.++.|. .+.|+|++|+||||+++.+++..
T Consensus 1233 ~vL~~is~~I~~Ge--kvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQ--RVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred ceeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhc
Confidence 34444544555666 69999999999999999999975
No 456
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=0.0001 Score=63.38 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=32.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~~l 139 (317)
++.++++||... |.......+.+++.+... ...+|+++++...+
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence 679999999974 566778888888876532 35677788776544
No 457
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.64 E-value=0.00012 Score=61.59 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=32.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~~~l 139 (317)
+++++++||... +.......+.+.+.+.. ....+|++|++.+.+
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI 196 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH
Confidence 679999999985 66777888888887653 245678888776554
No 458
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.63 E-value=0.00048 Score=55.56 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCceEEEECCCCCCHHH-HHHHHHHHH
Q psy879 20 ERLKVFSSSGNVPNIIISGPPGVGKTT-TILCLARIL 55 (317)
Q Consensus 20 ~~l~~~l~~~~~~~~ll~G~~G~GKt~-la~~la~~l 55 (317)
+.+...+... .++++.||+|+|||+ ++..+...+
T Consensus 15 ~~~~~~~~~~--~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 15 EAIEALLSGL--RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred HHHHHHHcCC--CcEEEECCCCCchhHHHHHHHHHHh
Confidence 3444444332 379999999999999 455555544
No 459
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.63 E-value=0.00014 Score=62.01 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=33.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCcCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~ 140 (317)
+++++++||... +.......+.+.+.+......+|+++++...+.
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 219 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL 219 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH
Confidence 579999999975 667777888888876555566788887766543
No 460
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.63 E-value=0.00017 Score=59.14 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=32.6
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCCcCch
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSEKIIE 141 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~~l~~ 141 (317)
+++++++||... |.......+.+.+.+.. ....+|+++++...+..
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 679999999974 56777788888876543 24557778877655443
No 461
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00022 Score=56.63 Aligned_cols=177 Identities=19% Similarity=0.234 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCce
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH 97 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 97 (317)
+.+.+.-.+.+|. .+.+.||+||||||+...+|....... + .+.++... ...|.++.
T Consensus 20 ~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~-G--~i~l~~r~------------------i~gPgaer 76 (259)
T COG4525 20 ALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSR-G--SIQLNGRR------------------IEGPGAER 76 (259)
T ss_pred hhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCccc-c--eEEECCEe------------------ccCCCccc
Confidence 3344444455666 589999999999999999998652211 1 22222211 11123456
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q psy879 98 KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177 (317)
Q Consensus 98 ~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~ 177 (317)
.||+=+|+ |+.++.-.. |+ .--+.....+..+...+..+.+..-|+. +
T Consensus 77 gvVFQ~~~----------LlPWl~~~d-Nv-------------------afgL~l~Gi~k~~R~~~a~q~l~~VgL~--~ 124 (259)
T COG4525 77 GVVFQNEA----------LLPWLNVID-NV-------------------AFGLQLRGIEKAQRREIAHQMLALVGLE--G 124 (259)
T ss_pred eeEeccCc----------cchhhHHHH-HH-------------------HHHHHhcCCCHHHHHHHHHHHHHHhCcc--c
Confidence 67664432 333333111 11 0113334677777777777766655553 3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh----------cCCHHHHHHHHHHH
Q psy879 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV----------EGNMKDSYKIIHHL 247 (317)
Q Consensus 178 ~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~----------~~~~~~~~~~~~~l 247 (317)
-.-.++.+.| |.+|+-..+.++.+.+....-.|+...+++....+.+.+++-.+. .++..+|+.+-.+|
T Consensus 125 ~~~~~i~qLS-GGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrL 203 (259)
T COG4525 125 AEHKYIWQLS-GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRL 203 (259)
T ss_pred ccccceEeec-chHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhhee
Confidence 2234444555 569999999999888777777777777776665555555543332 34788888888777
Q ss_pred HHc
Q psy879 248 YKL 250 (317)
Q Consensus 248 ~~~ 250 (317)
+..
T Consensus 204 vvl 206 (259)
T COG4525 204 VVL 206 (259)
T ss_pred EEe
Confidence 443
No 462
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00014 Score=62.78 Aligned_cols=42 Identities=10% Similarity=0.210 Sum_probs=31.4
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++|+||.. .|.......+.+.+.+... ...+|++|++.+
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 68999999998 5667778888888876532 456777777754
No 463
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00023 Score=56.86 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
.+.+.-.++.|. ..-+.||+|+||||+.+.++..+...
T Consensus 18 vrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 18 VRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred hhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCC
Confidence 334444455666 68899999999999999999987543
No 464
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.00015 Score=61.51 Aligned_cols=42 Identities=7% Similarity=0.169 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+......+|+++++..
T Consensus 164 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 206 (250)
T PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQ 206 (250)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999975 567778888888876544566777777654
No 465
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.00021 Score=60.50 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+......+|++|++..
T Consensus 160 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 202 (246)
T PRK14269 160 KPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ 202 (246)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 689999999985 566777888888876544556777777644
No 466
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00016 Score=60.99 Aligned_cols=42 Identities=7% Similarity=0.208 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+... ...+|++|++..
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 578999999975 567778888888876532 456778887754
No 467
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=0.0001 Score=62.24 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=30.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+.. ....+|++|++..
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~ 193 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME 193 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 689999999975 56677777777776543 2455777777654
No 468
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.61 E-value=0.00092 Score=60.98 Aligned_cols=27 Identities=41% Similarity=0.495 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPS 59 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~ 59 (317)
.++|+|++|+||||++..+|..+....
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g 123 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG 123 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 389999999999999999999885443
No 469
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.60 E-value=6.7e-05 Score=67.70 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=31.6
Q ss_pred CceeEEEEeCCC-CCCHHHHHHHHHHhhhc-cCCceEEEEecCCC
Q psy879 95 GRHKIVILDEAD-SMTDGAQQALRRTMEIY-SNTTRFALACNNSE 137 (317)
Q Consensus 95 ~~~~vliiDE~d-~l~~~~~~~ll~~le~~-~~~~~~il~~~~~~ 137 (317)
+++++|++||.+ +|..+...+|...+... .....+|++++++.
T Consensus 489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 578999999998 56777777777766543 45566777888764
No 470
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=6.9e-05 Score=63.53 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHH-
Q psy879 154 KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNC- 232 (317)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~- 232 (317)
.|++.+++..+.+.+.-- .++ ...+....+-+|.-|+-+.+.++.+......-.|+...+++......+...+..+
T Consensus 108 ~p~~~~~r~rv~elL~lv--qL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~ 184 (345)
T COG1118 108 RPSEAEIRARVEELLRLV--QLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184 (345)
T ss_pred CCChhhHHHHHHHHHHHh--ccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH
Confidence 466677777666554422 222 2234444455566888888888877777766666555555443333333333332
Q ss_pred ---------hcCCHHHHHHHHHHH--HHcC-----CCHHHHHH
Q psy879 233 ---------VEGNMKDSYKIIHHL--YKLG-----YAPEDIIG 259 (317)
Q Consensus 233 ---------~~~~~~~~~~~~~~l--~~~~-----~~~~~i~~ 259 (317)
..+|..+++...+.. +++| -+|.+++.
T Consensus 185 ~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 244777777776665 4444 35666644
No 471
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.60 E-value=0.00017 Score=61.95 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+.. +.......+.+.+.+......+|+++++.+
T Consensus 156 ~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~ 198 (275)
T cd03289 156 KAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE 198 (275)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHH
Confidence 679999999975 566667777777775545566788888764
No 472
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.60 E-value=0.00016 Score=60.17 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.5
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc--CCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS--NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~--~~~~~il~~~~~~ 137 (317)
+++++++||.. .|.......+.+.+.+.. ....+|++|++..
T Consensus 159 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67999999997 567777888888887653 2456788887754
No 473
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.60 E-value=0.00017 Score=60.35 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=31.8
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.. .+.......+.+.+.+... ...+|+++++..
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 68999999997 5677788888888876532 456777887754
No 474
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.59 E-value=0.02 Score=57.06 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=72.0
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHHHhhhcc--C--CceEEEEecCCCcCchhHhhhcc--eeeecCCCHHHHHHHHHHHHH
Q psy879 96 RHKIVILDEADSMTDGAQQALRRTMEIYS--N--TTRFALACNNSEKIIEPIQSRCA--MLRYNKLTDAQLLSKVIEICE 169 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~~~ll~~le~~~--~--~~~~il~~~~~~~l~~~i~sR~~--~i~f~~~~~~~~~~~l~~~~~ 169 (317)
++-|+|+|+.+-..+...+.|-..|...+ . ...+..+.+....+.+..++... .+...|++..+....+...+.
T Consensus 154 ~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 154 HPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred CCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 47899999999999888887777777544 0 00111111111233333444433 399999999999999999875
Q ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q psy879 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 170 ~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~ 203 (317)
.. .....+..+.+.+.+.|++-=+...++....
T Consensus 234 ~~-~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 234 CT-KLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred Cc-ccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 42 2455677888999999998777777766544
No 475
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00014 Score=62.67 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=30.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+++.+.+.. .+..+|++|++.+
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 689999999975 56777888888877653 2456777777644
No 476
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.59 E-value=0.00049 Score=56.07 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=31.1
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhc-cCCceEEEEecCCCc
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIY-SNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~-~~~~~~il~~~~~~~ 138 (317)
+++++++||.. .+.......+.+++.+. .....+|+++++...
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 185 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence 67999999998 56777788888877632 234567777777553
No 477
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.59 E-value=0.00021 Score=74.84 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.|.||+|+||||+++.+.+...
T Consensus 1183 vL~~lsl~i~~G~--~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1183 IYKDLTFSCDSKK--TTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred cccCeeEEEcCCC--EEEEECCCCCCHHHHHHHHHHhCC
Confidence 4444444455565 699999999999999999999754
No 478
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00014 Score=62.62 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=32.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~~l 139 (317)
++.++++||... +....+..+++.+.+.. ....+|++|++.+.+
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~ 199 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL 199 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 689999999974 56777888888887643 356678888776644
No 479
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.58 E-value=9.8e-05 Score=61.05 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=30.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+.+.+... ...+|++|++..
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 679999999975 567778888888876532 456777777643
No 480
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.58 E-value=0.00063 Score=57.56 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=45.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCCCcCchhHhhhcceee------ecCCCHHHHHHHHHH
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNSEKIIEPIQSRCAMLR------YNKLTDAQLLSKVIE 166 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~~~l~~~i~sR~~~i~------f~~~~~~~~~~~l~~ 166 (317)
++.++++||... |.......+.+.+.+.. ....+|+++++.. ....+..|+.++. -..-++..+.+.+..
T Consensus 133 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~ 211 (246)
T cd03237 133 DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNR 211 (246)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHH
Confidence 679999999975 56677777777776643 2456777777643 2223333332221 011233344455555
Q ss_pred HHHHcCCCCC
Q psy879 167 ICEKENISHT 176 (317)
Q Consensus 167 ~~~~~~~~i~ 176 (317)
.++.+++.+.
T Consensus 212 ~l~~~~~~~~ 221 (246)
T cd03237 212 FLKNLDITFR 221 (246)
T ss_pred HHHHCCCEEe
Confidence 5555555443
No 481
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00018 Score=60.70 Aligned_cols=43 Identities=7% Similarity=0.193 Sum_probs=31.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~~~ 138 (317)
+++++++||... +.......+.+.+.+.. ....+|+++++.+.
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 207 (241)
T cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL 207 (241)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 679999999975 56777788888887653 24567778877543
No 482
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00013 Score=60.67 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+++.+... ...+|++|++..
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 689999999974 567778888888776432 356777777644
No 483
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.00013 Score=61.52 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||.. .+.......+.+.+..... ...+|+++++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 67999999998 5667777777777765432 455777777643
No 484
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00013 Score=64.87 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=31.4
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
++.++++||.. .|.......+.+++.+... ...+|++|++.+
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999997 5667778888888876532 456778887754
No 485
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.57 E-value=0.00067 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|+||+|+||||+.+.++...
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999998654
No 486
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.57 E-value=0.00019 Score=75.66 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.+.-.++.|. .+.++|++|+||||+++.+.+.+.
T Consensus 1301 vL~~is~~I~~Ge--kiaIVGrTGsGKSTL~~lL~rl~~ 1337 (1522)
T TIGR00957 1301 VLRHINVTIHGGE--KVGIVGRTGAGKSSLTLGLFRINE 1337 (1522)
T ss_pred cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcc
Confidence 4444444455665 699999999999999999998753
No 487
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.57 E-value=0.00016 Score=61.03 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... |....+..+.+++.+......+|+++++.+
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 203 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME 203 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 579999999974 567778888888887655566777777644
No 488
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00015 Score=61.21 Aligned_cols=42 Identities=7% Similarity=0.202 Sum_probs=30.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC-CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN-TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~-~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+++.+... ...+|+++++..
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 678999999974 567778888888876543 455777777654
No 489
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.57 E-value=0.00034 Score=54.31 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999974
No 490
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.56 E-value=0.0047 Score=49.82 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
-++|.||+|+|||++++.+.+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998864
No 491
>KOG0054|consensus
Probab=97.56 E-value=0.00014 Score=73.92 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.+++.+.-.++.|. .+-+.|-.|+|||+++.++.+...
T Consensus 1152 lp~VLk~is~~I~p~e--KVGIVGRTGaGKSSL~~aLFRl~e 1191 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGE--KVGIVGRTGAGKSSLILALFRLVE 1191 (1381)
T ss_pred CcchhcCceEEEcCCc--eEEEeCCCCCCHHHHHHHHHHhcC
Confidence 4556666665566665 699999999999999999999764
No 492
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.56 E-value=0.00025 Score=59.84 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
.++|+||+|+||||+++.+++.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc
Confidence 59999999999999999999987443
No 493
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.56 E-value=0.0007 Score=60.57 Aligned_cols=36 Identities=42% Similarity=0.653 Sum_probs=27.1
Q ss_pred HHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHHHcC
Q psy879 22 LKVFSSSGNVPN--IIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 22 l~~~l~~~~~~~--~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
|...+..|-.+. ++++|+||+|||+++..++..+..
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~ 108 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK 108 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 444454444443 899999999999999999987643
No 494
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.55 E-value=0.00013 Score=63.79 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=30.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||.. .|.+.....+.+.+.+.. ....+|++|++..
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 68999999996 567777888888887653 2455777777644
No 495
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.55 E-value=0.00051 Score=56.52 Aligned_cols=73 Identities=15% Similarity=0.016 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHh
Q psy879 159 QLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV 233 (317)
Q Consensus 159 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 233 (317)
+..++....+..-|+ .+..........+|.-++.+.+.++.+.....|-.|+.-..++......+.+++..+.
T Consensus 117 ~~~~~~~~l~~~lgl--~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~ 189 (226)
T COG1136 117 RRKRAAEELLEVLGL--EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189 (226)
T ss_pred HHHHHHHHHHHhcCC--hhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH
Confidence 444455555443343 3444434455555668888889999988888888887777777766666777766653
No 496
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.00023 Score=60.94 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=31.6
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.. .|.......+.+.+.+... ...+|+++++..
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999997 5677888888888876532 456777777654
No 497
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.55 E-value=0.00016 Score=61.05 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=30.8
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
+++++++||... +.......+.+++.+.. ....+|++|++..
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 679999999975 56777888888887653 2456777777654
No 498
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.55 E-value=0.0023 Score=50.63 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
|.+|.+.-..=-+.+.++..+ .-+.|.-+|+|++|+||||+..++|...
T Consensus 13 ve~~~eYp~slPa~r~l~~~L-eF~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 13 VESFEEYPFSLPAFRHLEERL-EFRAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred ccchhhCcccchHHHhhhhhc-cccCceEEEEcCCCccHHHHHHHHHhhc
Confidence 444554444444555555433 3445678999999999999999999765
No 499
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00013 Score=65.07 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=30.4
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.. .|.......+.+.+.+... .+.+|++|++..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999998 4566677777777765432 466888888754
No 500
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00019 Score=61.93 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=32.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~~l 139 (317)
+++++++||... |.......+++.+.+... ...+|++|++...+
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~ 204 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA 204 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 679999999975 567778888888876543 45677788776554
Done!