Query psy879
Match_columns 317
No_of_seqs 265 out of 3125
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 19:20:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 5E-48 1.7E-52 342.0 35.3 309 2-311 17-332 (340)
2 2chq_A Replication factor C sm 100.0 5.4E-46 1.9E-50 326.2 31.9 310 1-311 8-318 (319)
3 1iqp_A RFCS; clamp loader, ext 100.0 3.7E-45 1.3E-49 322.0 32.2 309 2-311 17-326 (327)
4 1sxj_B Activator 1 37 kDa subu 100.0 4.4E-44 1.5E-48 314.5 30.7 307 2-311 13-321 (323)
5 1sxj_D Activator 1 41 kDa subu 100.0 1.2E-43 4.2E-48 315.6 29.7 307 2-308 29-352 (353)
6 1sxj_E Activator 1 40 kDa subu 100.0 4.1E-43 1.4E-47 312.4 29.6 307 1-309 5-352 (354)
7 3u61_B DNA polymerase accessor 100.0 6.8E-43 2.3E-47 307.3 29.7 294 1-309 17-320 (324)
8 1jr3_A DNA polymerase III subu 100.0 2.4E-40 8.3E-45 296.5 36.4 307 2-311 8-361 (373)
9 2gno_A DNA polymerase III, gam 100.0 2E-39 6.9E-44 280.6 23.6 280 14-309 1-297 (305)
10 1a5t_A Delta prime, HOLB; zinc 100.0 4.7E-36 1.6E-40 264.2 24.4 284 13-309 5-322 (334)
11 3pvs_A Replication-associated 100.0 7.7E-35 2.6E-39 264.5 30.6 293 2-307 18-341 (447)
12 1jr3_D DNA polymerase III, del 100.0 4.8E-34 1.6E-38 252.7 18.7 278 22-308 9-333 (343)
13 2chg_A Replication factor C sm 100.0 8.7E-31 3E-35 217.3 24.1 216 2-218 9-224 (226)
14 1njg_A DNA polymerase III subu 100.0 1.3E-28 4.6E-33 206.8 23.8 214 2-218 15-249 (250)
15 1sxj_A Activator 1 95 kDa subu 100.0 5.8E-28 2E-32 224.3 20.0 227 1-234 30-291 (516)
16 3uk6_A RUVB-like 2; hexameric 99.9 4.1E-26 1.4E-30 203.8 20.3 214 2-219 35-329 (368)
17 3pfi_A Holliday junction ATP-d 99.9 1.8E-25 6E-30 197.4 22.3 202 1-216 20-250 (338)
18 2c9o_A RUVB-like 1; hexameric 99.9 2.1E-25 7.2E-30 204.1 22.6 122 98-220 297-437 (456)
19 1hqc_A RUVB; extended AAA-ATPa 99.9 1.5E-24 5.1E-29 190.3 23.6 202 2-216 4-234 (324)
20 1fnn_A CDC6P, cell division co 99.9 1.4E-23 4.7E-28 188.5 26.6 279 2-285 12-342 (389)
21 1in4_A RUVB, holliday junction 99.9 2.7E-23 9.1E-28 182.8 24.2 204 1-218 16-248 (334)
22 2v1u_A Cell division control p 99.9 7.9E-23 2.7E-27 183.4 26.4 277 3-287 15-344 (387)
23 3bos_A Putative DNA replicatio 99.9 6.8E-24 2.3E-28 177.9 18.2 204 2-218 19-241 (242)
24 2qby_B CDC6 homolog 3, cell di 99.9 1.7E-22 5.8E-27 181.2 19.1 269 3-284 16-329 (384)
25 3vfd_A Spastin; ATPase, microt 99.9 5.3E-22 1.8E-26 178.2 21.8 187 1-199 106-326 (389)
26 3b9p_A CG5977-PA, isoform A; A 99.9 1.8E-21 6.2E-26 168.5 24.3 207 2-220 13-272 (297)
27 2qby_A CDC6 homolog 1, cell di 99.9 6.2E-22 2.1E-26 177.4 20.6 258 3-272 16-326 (386)
28 3syl_A Protein CBBX; photosynt 99.9 2.3E-22 8E-27 175.1 17.1 182 11-202 32-259 (309)
29 2z4s_A Chromosomal replication 99.9 4.3E-22 1.5E-26 181.0 17.4 211 4-221 98-333 (440)
30 3eie_A Vacuolar protein sortin 99.9 1.8E-21 6E-26 170.4 19.7 187 2-200 10-230 (322)
31 3te6_A Regulatory protein SIR3 99.9 1.4E-21 4.8E-26 168.6 17.9 189 12-203 22-284 (318)
32 3d8b_A Fidgetin-like protein 1 99.9 6.2E-21 2.1E-25 169.1 21.3 187 2-200 76-297 (357)
33 2qp9_X Vacuolar protein sortin 99.9 4.1E-21 1.4E-25 170.1 19.9 187 2-200 43-263 (355)
34 1ofh_A ATP-dependent HSL prote 99.9 3.9E-21 1.3E-25 167.3 18.9 204 10-220 15-299 (310)
35 4b4t_J 26S protease regulatory 99.9 1.1E-20 3.7E-25 166.8 20.2 198 7-217 145-386 (405)
36 1xwi_A SKD1 protein; VPS4B, AA 99.9 4.4E-20 1.5E-24 161.3 23.4 187 3-200 5-225 (322)
37 2zan_A Vacuolar protein sortin 99.9 1.6E-20 5.4E-25 171.0 20.1 189 2-201 126-348 (444)
38 1l8q_A Chromosomal replication 99.9 8.4E-21 2.9E-25 166.4 15.5 187 7-204 8-214 (324)
39 2r44_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 169.1 13.1 204 2-215 19-292 (331)
40 1lv7_A FTSH; alpha/beta domain 99.9 1.2E-19 3.9E-24 153.9 21.1 202 2-217 4-249 (257)
41 4b4t_M 26S protease regulatory 99.8 2.7E-20 9.1E-25 166.7 17.6 200 6-218 177-420 (434)
42 3h4m_A Proteasome-activating n 99.8 6.5E-20 2.2E-24 157.8 19.4 201 4-217 11-255 (285)
43 4b4t_L 26S protease subunit RP 99.8 1.3E-19 4.3E-24 162.5 21.4 197 7-216 178-418 (437)
44 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.7E-19 9.1E-24 152.0 22.4 197 6-214 2-243 (262)
45 4b4t_H 26S protease regulatory 99.8 2.7E-19 9.1E-24 159.9 21.1 198 5-216 203-446 (467)
46 4b4t_I 26S protease regulatory 99.8 2E-19 6.8E-24 159.2 20.0 197 7-217 179-420 (437)
47 1g8p_A Magnesium-chelatase 38 99.8 7.3E-20 2.5E-24 162.0 16.7 211 5-217 19-319 (350)
48 3pxg_A Negative regulator of g 99.8 3.3E-20 1.1E-24 170.0 14.2 189 2-203 172-383 (468)
49 4fcw_A Chaperone protein CLPB; 99.8 8.6E-20 2.9E-24 158.9 14.9 185 10-202 17-275 (311)
50 4b4t_K 26S protease regulatory 99.8 1.1E-18 3.6E-23 156.3 19.8 197 7-216 169-410 (428)
51 3cf0_A Transitional endoplasmi 99.8 1.7E-18 5.8E-23 150.0 17.7 185 3-200 8-231 (301)
52 2ce7_A Cell division protein F 99.8 3.7E-18 1.3E-22 155.2 20.4 198 7-218 13-254 (476)
53 2bjv_A PSP operon transcriptio 99.8 1E-18 3.4E-23 148.7 15.3 203 8-213 4-250 (265)
54 2r62_A Cell division protease 99.8 5.1E-20 1.8E-24 157.0 5.3 206 2-220 3-253 (268)
55 1jbk_A CLPB protein; beta barr 99.8 8.1E-19 2.8E-23 141.5 11.5 159 2-164 14-194 (195)
56 1qvr_A CLPB protein; coiled co 99.8 9E-19 3.1E-23 171.7 13.5 194 2-203 162-390 (854)
57 3k1j_A LON protease, ATP-depen 99.8 8.5E-19 2.9E-23 165.6 12.7 214 2-217 33-372 (604)
58 1d2n_A N-ethylmaleimide-sensit 99.8 3.8E-18 1.3E-22 145.7 15.2 178 10-204 33-248 (272)
59 3m6a_A ATP-dependent protease 99.8 3.2E-18 1.1E-22 159.4 15.1 202 10-220 81-341 (543)
60 3pxi_A Negative regulator of g 99.8 2.3E-18 7.8E-23 167.1 14.2 189 2-203 172-383 (758)
61 1um8_A ATP-dependent CLP prote 99.8 1.1E-18 3.9E-23 155.9 11.0 203 11-218 22-363 (376)
62 1ojl_A Transcriptional regulat 99.8 7.8E-18 2.7E-22 145.8 15.3 203 10-215 2-247 (304)
63 3hu3_A Transitional endoplasmi 99.8 6.6E-18 2.2E-22 154.8 15.5 184 4-200 198-417 (489)
64 3pxi_A Negative regulator of g 99.8 7.2E-18 2.4E-22 163.6 15.8 184 10-201 491-720 (758)
65 1r6b_X CLPA protein; AAA+, N-t 99.8 9.1E-18 3.1E-22 163.0 15.7 207 2-217 178-430 (758)
66 1r6b_X CLPA protein; AAA+, N-t 99.8 2.4E-17 8.3E-22 160.1 18.3 180 10-201 458-711 (758)
67 2p65_A Hypothetical protein PF 99.8 2.1E-18 7.1E-23 138.5 8.8 147 2-156 14-187 (187)
68 1w5s_A Origin recognition comp 99.7 2.4E-16 8.3E-21 142.3 20.9 203 10-217 22-290 (412)
69 1ixz_A ATP-dependent metallopr 99.7 1.4E-16 4.8E-21 134.6 17.3 205 3-217 9-253 (254)
70 2dhr_A FTSH; AAA+ protein, hex 99.7 1.4E-16 4.9E-21 145.6 17.6 203 5-217 26-268 (499)
71 1qvr_A CLPB protein; coiled co 99.7 2.8E-17 9.5E-22 161.2 12.1 184 10-202 558-816 (854)
72 1iy2_A ATP-dependent metallopr 99.7 1.1E-15 3.8E-20 130.8 18.1 203 5-217 35-277 (278)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.7E-15 5.7E-20 138.8 17.3 198 10-214 22-280 (500)
74 3hws_A ATP-dependent CLP prote 99.7 6.9E-17 2.4E-21 143.6 7.4 202 12-218 17-347 (363)
75 3cf2_A TER ATPase, transitiona 99.6 1.3E-15 4.3E-20 146.0 14.5 170 7-189 201-405 (806)
76 3t15_A Ribulose bisphosphate c 99.6 1.2E-14 4.1E-19 125.1 17.8 149 33-192 38-221 (293)
77 1g41_A Heat shock protein HSLU 99.6 4.7E-15 1.6E-19 133.1 15.2 123 97-219 251-432 (444)
78 3cf2_A TER ATPase, transitiona 99.6 1E-15 3.6E-20 146.5 10.7 179 7-198 474-694 (806)
79 3n70_A Transport activator; si 99.6 2.9E-15 9.9E-20 115.3 11.1 132 11-155 2-144 (145)
80 3f9v_A Minichromosome maintena 99.6 8.4E-17 2.9E-21 151.1 2.7 205 10-216 295-583 (595)
81 2x8a_A Nuclear valosin-contain 99.6 6.6E-14 2.2E-18 119.2 19.0 157 6-170 6-193 (274)
82 3co5_A Putative two-component 99.5 1.4E-14 4.8E-19 111.2 8.1 128 11-155 5-142 (143)
83 1ypw_A Transitional endoplasmi 99.5 9.7E-16 3.3E-20 148.8 -1.4 154 5-170 472-663 (806)
84 1ypw_A Transitional endoplasmi 99.5 1.3E-13 4.4E-18 133.9 12.7 182 3-193 197-409 (806)
85 3ec2_A DNA replication protein 99.5 7.5E-14 2.6E-18 111.4 8.3 130 2-138 2-145 (180)
86 2qen_A Walker-type ATPase; unk 99.5 5.5E-12 1.9E-16 111.0 19.4 180 7-199 9-247 (350)
87 3dzd_A Transcriptional regulat 99.4 1.3E-11 4.3E-16 109.5 16.6 189 10-203 129-359 (368)
88 1ny5_A Transcriptional regulat 99.4 7E-11 2.4E-15 105.5 20.8 203 9-214 136-381 (387)
89 1u0j_A DNA replication protein 99.4 6.5E-12 2.2E-16 104.9 12.1 137 18-177 89-259 (267)
90 2fna_A Conserved hypothetical 99.3 1.7E-10 5.8E-15 101.7 17.4 176 8-200 11-252 (357)
91 2w58_A DNAI, primosome compone 99.3 7.1E-12 2.4E-16 101.8 6.9 122 2-136 17-159 (202)
92 3f8t_A Predicted ATPase involv 99.3 7.3E-11 2.5E-15 105.5 13.5 198 11-215 214-478 (506)
93 2kjq_A DNAA-related protein; s 99.2 2.5E-11 8.5E-16 93.5 8.9 120 8-149 15-141 (149)
94 1tue_A Replication protein E1; 99.2 2E-11 6.7E-16 97.4 8.5 116 18-155 44-179 (212)
95 4akg_A Glutathione S-transfera 99.1 3.5E-10 1.2E-14 120.3 14.8 143 22-170 1260-1433(2695)
96 2qgz_A Helicase loader, putati 99.1 6.4E-11 2.2E-15 102.4 5.1 126 3-136 117-258 (308)
97 3upu_A ATP-dependent DNA helic 99.0 7.8E-10 2.7E-14 101.1 9.8 129 1-135 15-164 (459)
98 4akg_A Glutathione S-transfera 98.9 7.1E-08 2.4E-12 103.0 19.1 166 18-201 634-836 (2695)
99 3vkg_A Dynein heavy chain, cyt 98.8 5.4E-08 1.8E-12 104.6 14.3 142 22-169 1297-1470(3245)
100 1ye8_A Protein THEP1, hypothet 98.7 1.2E-07 4.2E-12 74.9 11.2 70 95-166 98-174 (178)
101 1z6t_A APAF-1, apoptotic prote 98.7 3.8E-07 1.3E-11 86.0 15.3 177 6-196 120-326 (591)
102 2r2a_A Uncharacterized protein 98.6 7.1E-08 2.4E-12 77.6 7.0 61 95-155 86-153 (199)
103 3sfz_A APAF-1, apoptotic pepti 98.5 2.8E-06 9.7E-11 86.6 16.8 177 6-193 120-323 (1249)
104 3vkg_A Dynein heavy chain, cyt 98.5 5.8E-06 2E-10 89.4 18.9 167 18-202 593-797 (3245)
105 2orw_A Thymidine kinase; TMTK, 98.4 2.3E-07 7.9E-12 73.7 5.4 108 33-149 5-132 (184)
106 2a5y_B CED-4; apoptosis; HET: 98.4 2E-06 6.7E-11 80.3 12.4 173 13-195 131-334 (549)
107 2vhj_A Ntpase P4, P4; non- hyd 98.2 9.9E-06 3.4E-10 69.3 10.5 65 34-110 126-196 (331)
108 2b8t_A Thymidine kinase; deoxy 98.2 4E-06 1.4E-10 68.4 7.2 97 33-135 14-125 (223)
109 1g5t_A COB(I)alamin adenosyltr 98.1 1.3E-05 4.3E-10 63.7 8.3 106 32-137 29-164 (196)
110 2i3b_A HCR-ntpase, human cance 98.0 3.3E-05 1.1E-09 61.4 9.5 70 95-166 104-182 (189)
111 1jql_B DNA polymerase III, del 98.0 4.9E-05 1.7E-09 57.3 9.8 122 23-152 10-139 (140)
112 1vt4_I APAF-1 related killer D 98.0 7E-05 2.4E-09 73.6 12.9 146 13-168 131-311 (1221)
113 3e1s_A Exodeoxyribonuclease V, 97.9 7.8E-06 2.7E-10 76.4 5.6 113 15-136 191-316 (574)
114 3nh6_A ATP-binding cassette SU 97.9 2.4E-06 8.2E-11 73.3 2.0 42 96-137 208-250 (306)
115 3cmu_A Protein RECA, recombina 97.9 3.2E-05 1.1E-09 80.8 10.4 26 33-58 1429-1454(2050)
116 2w0m_A SSO2452; RECA, SSPF, un 97.9 4E-05 1.4E-09 62.7 8.8 24 33-56 25-48 (235)
117 2ff7_A Alpha-hemolysin translo 97.9 8.3E-06 2.8E-10 67.9 4.1 42 96-137 163-205 (247)
118 2eyu_A Twitching motility prot 97.8 9.2E-05 3.1E-09 62.0 9.9 46 6-56 5-50 (261)
119 2r8r_A Sensor protein; KDPD, P 97.8 6.9E-05 2.4E-09 60.8 8.7 128 33-166 8-175 (228)
120 2cvh_A DNA repair and recombin 97.8 0.00014 5E-09 58.9 10.7 21 33-53 22-42 (220)
121 1w36_D RECD, exodeoxyribonucle 97.8 0.0001 3.5E-09 69.5 10.8 100 33-136 166-299 (608)
122 3tif_A Uncharacterized ABC tra 97.8 1.7E-05 5.9E-10 65.4 4.5 42 96-137 163-207 (235)
123 2pt7_A CAG-ALFA; ATPase, prote 97.8 0.00034 1.2E-08 60.6 12.8 37 18-56 160-196 (330)
124 4gp7_A Metallophosphoesterase; 97.8 8.6E-05 2.9E-09 58.0 8.2 17 33-49 11-27 (171)
125 3gfo_A Cobalt import ATP-bindi 97.7 9.8E-06 3.4E-10 68.4 2.5 43 96-138 161-206 (275)
126 3tui_C Methionine import ATP-b 97.7 1.7E-05 5.8E-10 69.4 4.0 41 96-136 181-224 (366)
127 3jvv_A Twitching mobility prot 97.7 0.0003 1E-08 61.6 12.0 114 6-137 103-232 (356)
128 2ixe_A Antigen peptide transpo 97.7 2.2E-05 7.6E-10 66.2 4.3 42 96-137 174-218 (271)
129 1t6n_A Probable ATP-dependent 97.7 0.0013 4.4E-08 53.3 14.8 47 7-55 14-75 (220)
130 2zr9_A Protein RECA, recombina 97.7 0.00011 3.8E-09 64.2 8.5 24 33-56 63-86 (349)
131 1vpl_A ABC transporter, ATP-bi 97.7 2E-05 6.9E-10 65.8 3.6 41 96-136 164-206 (256)
132 2pcj_A ABC transporter, lipopr 97.7 3.1E-05 1.1E-09 63.4 4.6 41 96-136 158-200 (224)
133 3qf4_B Uncharacterized ABC tra 97.7 1.8E-05 6.1E-10 74.5 3.5 43 96-138 509-552 (598)
134 3b5x_A Lipid A export ATP-bind 97.7 4.9E-05 1.7E-09 71.3 6.5 42 96-137 498-540 (582)
135 4g1u_C Hemin import ATP-bindin 97.7 1.8E-05 6.3E-10 66.5 3.2 41 96-136 165-208 (266)
136 2j9r_A Thymidine kinase; TK1, 97.7 0.00017 5.7E-09 58.1 8.4 97 34-135 31-137 (214)
137 1qde_A EIF4A, translation init 97.7 0.00038 1.3E-08 56.6 10.8 47 7-55 14-76 (224)
138 2qi9_C Vitamin B12 import ATP- 97.7 2.3E-05 7.8E-10 65.2 3.3 38 99-136 154-193 (249)
139 3dl0_A Adenylate kinase; phosp 97.6 0.0016 5.4E-08 52.6 14.1 23 33-55 2-24 (216)
140 1n0w_A DNA repair protein RAD5 97.6 0.00046 1.6E-08 56.8 11.0 23 33-55 26-48 (243)
141 2ehv_A Hypothetical protein PH 97.6 9.5E-05 3.2E-09 61.3 6.7 21 33-53 32-52 (251)
142 3hr8_A Protein RECA; alpha and 97.6 0.00042 1.4E-08 60.5 11.0 36 21-56 48-86 (356)
143 2fz4_A DNA repair protein RAD2 97.6 0.00048 1.6E-08 56.8 10.8 38 15-55 95-132 (237)
144 4a82_A Cystic fibrosis transme 97.6 1.5E-05 5.2E-10 74.7 1.9 43 96-138 495-538 (578)
145 1svm_A Large T antigen; AAA+ f 97.6 0.0001 3.4E-09 65.0 7.0 24 33-56 171-194 (377)
146 2olj_A Amino acid ABC transpor 97.6 2.8E-05 9.7E-10 65.2 3.3 41 96-136 177-219 (263)
147 1xx6_A Thymidine kinase; NESG, 97.6 5.7E-05 1.9E-09 60.1 4.8 92 33-135 10-117 (191)
148 3qf4_A ABC transporter, ATP-bi 97.6 2.7E-05 9.2E-10 73.1 3.4 42 96-137 497-539 (587)
149 1s96_A Guanylate kinase, GMP k 97.6 0.00059 2E-08 55.5 10.9 23 33-55 18-40 (219)
150 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00046 1.6E-08 57.7 10.5 24 32-55 5-28 (260)
151 3rlf_A Maltose/maltodextrin im 97.6 2.5E-05 8.6E-10 68.8 2.8 42 96-137 151-195 (381)
152 1u94_A RECA protein, recombina 97.6 0.0002 6.8E-09 62.7 8.5 24 33-56 65-88 (356)
153 3b60_A Lipid A export ATP-bind 97.6 3.5E-05 1.2E-09 72.3 3.9 43 96-138 498-541 (582)
154 2ghi_A Transport protein; mult 97.6 2E-05 6.9E-10 66.0 2.0 43 96-138 173-216 (260)
155 3tlx_A Adenylate kinase 2; str 97.6 0.002 7E-08 53.2 14.0 23 33-55 31-53 (243)
156 2iut_A DNA translocase FTSK; n 97.6 0.0043 1.5E-07 57.3 17.1 69 97-165 344-420 (574)
157 1ji0_A ABC transporter; ATP bi 97.5 3.3E-05 1.1E-09 64.0 2.8 41 96-136 157-199 (240)
158 4a74_A DNA repair and recombin 97.5 0.00029 9.9E-09 57.5 8.5 24 33-56 27-50 (231)
159 3gd7_A Fusion complex of cysti 97.5 2.7E-05 9.1E-10 69.0 2.2 42 96-137 173-215 (390)
160 2dr3_A UPF0273 protein PH0284; 97.5 0.00068 2.3E-08 55.8 10.7 24 33-56 25-48 (247)
161 2ga8_A Hypothetical 39.9 kDa p 97.5 9.4E-05 3.2E-09 64.2 5.5 40 17-56 10-49 (359)
162 3d31_A Sulfate/molybdate ABC t 97.5 5E-05 1.7E-09 66.3 3.7 42 96-137 145-189 (348)
163 2orv_A Thymidine kinase; TP4A 97.5 0.00038 1.3E-08 56.5 8.7 98 33-135 21-125 (234)
164 3cmw_A Protein RECA, recombina 97.5 0.00032 1.1E-08 72.5 10.0 22 34-55 1085-1106(1706)
165 2gxq_A Heat resistant RNA depe 97.5 0.00058 2E-08 54.7 9.9 41 95-135 143-184 (207)
166 1z47_A CYSA, putative ABC-tran 97.5 4E-05 1.4E-09 67.0 3.0 42 96-137 163-207 (355)
167 2yyz_A Sugar ABC transporter, 97.5 4.3E-05 1.5E-09 66.9 3.2 42 96-137 151-195 (359)
168 3llm_A ATP-dependent RNA helic 97.5 0.00084 2.9E-08 55.1 10.8 20 33-52 78-97 (235)
169 1xp8_A RECA protein, recombina 97.5 0.00064 2.2E-08 59.7 10.6 23 34-56 77-99 (366)
170 3h1t_A Type I site-specific re 97.5 0.00025 8.7E-09 66.6 8.5 41 15-56 183-223 (590)
171 4f4c_A Multidrug resistance pr 97.5 3.8E-05 1.3E-09 78.6 2.9 43 96-138 1235-1278(1321)
172 1vec_A ATP-dependent RNA helic 97.5 0.0009 3.1E-08 53.5 10.6 41 95-135 145-186 (206)
173 2ius_A DNA translocase FTSK; n 97.5 0.0032 1.1E-07 57.6 15.2 69 98-166 299-375 (512)
174 2it1_A 362AA long hypothetical 97.5 4.5E-05 1.6E-09 66.8 2.9 42 96-137 151-195 (362)
175 1v43_A Sugar-binding transport 97.4 5.1E-05 1.8E-09 66.7 2.8 42 96-137 159-203 (372)
176 2onk_A Molybdate/tungstate ABC 97.4 3.1E-05 1.1E-09 64.0 1.3 41 96-136 144-187 (240)
177 3dm5_A SRP54, signal recogniti 97.4 0.0026 8.8E-08 57.1 13.7 27 33-59 102-128 (443)
178 3lw7_A Adenylate kinase relate 97.4 0.00059 2E-08 52.9 8.5 22 33-55 3-24 (179)
179 3fb4_A Adenylate kinase; psych 97.4 0.002 6.8E-08 52.0 11.9 23 33-55 2-24 (216)
180 3fvq_A Fe(3+) IONS import ATP- 97.4 6.1E-05 2.1E-09 65.8 2.9 27 27-55 28-54 (359)
181 2nq2_C Hypothetical ABC transp 97.4 0.00058 2E-08 56.8 8.7 41 96-136 146-189 (253)
182 3fmo_B ATP-dependent RNA helic 97.4 0.0014 4.7E-08 56.0 11.3 49 7-55 92-156 (300)
183 3kl4_A SRP54, signal recogniti 97.4 0.0011 3.6E-08 59.5 10.8 26 34-59 100-125 (433)
184 2oxc_A Probable ATP-dependent 97.4 0.001 3.5E-08 54.4 10.0 47 7-55 24-86 (230)
185 1cr0_A DNA primase/helicase; R 97.4 0.00082 2.8E-08 57.3 9.5 24 33-56 37-60 (296)
186 1pzn_A RAD51, DNA repair and r 97.4 0.00094 3.2E-08 58.4 9.8 22 34-55 134-155 (349)
187 1v5w_A DMC1, meiotic recombina 97.4 0.0017 5.8E-08 56.6 11.4 22 34-55 125-146 (343)
188 1nrj_B SR-beta, signal recogni 97.3 0.0012 4.3E-08 53.2 9.8 108 29-138 10-132 (218)
189 1g29_1 MALK, maltose transport 97.3 5.9E-05 2E-09 66.4 1.9 42 96-137 157-201 (372)
190 2yl4_A ATP-binding cassette SU 97.3 8.1E-05 2.8E-09 70.0 2.9 42 96-137 501-543 (595)
191 4f4c_A Multidrug resistance pr 97.3 7.6E-05 2.6E-09 76.4 2.9 24 33-56 446-469 (1321)
192 3pey_A ATP-dependent RNA helic 97.3 0.0026 8.9E-08 56.0 12.5 42 95-136 144-187 (395)
193 3ber_A Probable ATP-dependent 97.3 0.0017 5.7E-08 53.9 10.4 41 95-135 185-226 (249)
194 3bor_A Human initiation factor 97.3 0.0014 4.7E-08 53.9 9.8 41 95-135 172-213 (237)
195 2pjz_A Hypothetical protein ST 97.3 0.00068 2.3E-08 56.7 7.8 40 96-137 146-186 (263)
196 1w4r_A Thymidine kinase; type 97.3 0.00063 2.2E-08 53.8 7.1 95 33-134 22-125 (195)
197 3vaa_A Shikimate kinase, SK; s 97.3 0.0002 6.7E-09 57.4 4.3 32 22-55 18-49 (199)
198 1q0u_A Bstdead; DEAD protein, 97.3 0.0013 4.5E-08 53.2 9.1 43 96-138 150-194 (219)
199 3io5_A Recombination and repai 97.3 0.0024 8.3E-08 54.4 10.7 35 22-56 14-53 (333)
200 3zvl_A Bifunctional polynucleo 97.2 0.00083 2.8E-08 60.2 8.3 23 33-55 260-282 (416)
201 3cmu_A Protein RECA, recombina 97.2 0.00093 3.2E-08 70.0 9.7 26 33-58 1083-1108(2050)
202 2z0h_A DTMP kinase, thymidylat 97.2 0.0029 9.9E-08 50.1 10.8 23 34-56 3-25 (197)
203 3b6e_A Interferon-induced heli 97.2 0.00047 1.6E-08 55.5 6.1 38 15-55 35-72 (216)
204 1hv8_A Putative ATP-dependent 97.2 0.002 6.7E-08 56.2 10.6 42 95-136 146-188 (367)
205 3trf_A Shikimate kinase, SK; a 97.2 0.00022 7.6E-09 56.2 4.0 24 32-55 6-29 (185)
206 3g5u_A MCG1178, multidrug resi 97.2 0.00019 6.4E-09 73.4 4.1 42 96-137 544-586 (1284)
207 1qhx_A CPT, protein (chloramph 97.2 0.00019 6.5E-09 56.1 3.3 23 33-55 5-27 (178)
208 2z43_A DNA repair and recombin 97.2 0.0017 5.6E-08 56.2 9.3 22 34-55 110-131 (324)
209 4eun_A Thermoresistant glucoki 97.2 0.00033 1.1E-08 56.1 4.3 24 32-55 30-53 (200)
210 1htw_A HI0065; nucleotide-bind 97.1 0.00033 1.1E-08 53.8 4.0 23 33-55 35-57 (158)
211 2pl3_A Probable ATP-dependent 97.1 0.0028 9.7E-08 51.8 10.0 41 95-135 170-211 (236)
212 3kb2_A SPBC2 prophage-derived 97.1 0.00027 9.2E-09 54.8 3.5 23 33-55 3-25 (173)
213 3iij_A Coilin-interacting nucl 97.1 0.00037 1.3E-08 54.7 4.1 24 32-55 12-35 (180)
214 1kag_A SKI, shikimate kinase I 97.1 0.00029 9.8E-09 54.8 3.5 23 33-55 6-28 (173)
215 1ltq_A Polynucleotide kinase; 97.1 0.0028 9.4E-08 54.0 9.9 23 33-55 4-26 (301)
216 1vma_A Cell division protein F 97.1 0.002 7E-08 55.1 8.9 24 34-57 107-130 (306)
217 1via_A Shikimate kinase; struc 97.1 0.00036 1.2E-08 54.5 3.8 23 33-55 6-28 (175)
218 3b85_A Phosphate starvation-in 97.1 0.00029 9.8E-09 56.8 3.3 42 3-54 4-45 (208)
219 1xti_A Probable ATP-dependent 97.1 0.0089 3E-07 52.6 13.3 40 95-134 151-192 (391)
220 3g5u_A MCG1178, multidrug resi 97.1 0.00025 8.6E-09 72.4 3.3 44 96-139 1189-1233(1284)
221 2px0_A Flagellar biosynthesis 97.1 0.004 1.4E-07 53.0 10.3 24 33-56 107-130 (296)
222 3uie_A Adenylyl-sulfate kinase 97.0 0.00061 2.1E-08 54.5 4.9 24 33-56 27-50 (200)
223 1gvn_B Zeta; postsegregational 97.0 0.00046 1.6E-08 58.6 4.3 22 34-55 36-57 (287)
224 1s2m_A Putative ATP-dependent 97.0 0.01 3.4E-07 52.5 13.0 46 7-54 21-81 (400)
225 1kgd_A CASK, peripheral plasma 97.0 0.00045 1.6E-08 54.3 3.8 23 33-55 7-29 (180)
226 1kht_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 54.6 3.7 24 33-56 5-28 (192)
227 3fe2_A Probable ATP-dependent 97.0 0.0047 1.6E-07 50.8 10.1 41 95-135 175-216 (242)
228 3iuy_A Probable ATP-dependent 97.0 0.0059 2E-07 49.6 10.6 41 95-135 166-207 (228)
229 3sop_A Neuronal-specific septi 97.0 0.012 4.1E-07 49.3 12.6 24 33-56 4-27 (270)
230 1y63_A LMAJ004144AAA protein; 97.0 0.00054 1.8E-08 54.0 4.0 24 32-55 11-34 (184)
231 2p5t_B PEZT; postsegregational 97.0 0.00041 1.4E-08 57.8 3.4 23 33-55 34-56 (253)
232 3lda_A DNA repair protein RAD5 97.0 0.0022 7.4E-08 57.0 8.2 23 33-55 180-202 (400)
233 1ly1_A Polynucleotide kinase; 97.0 0.00044 1.5E-08 54.0 3.3 22 33-54 4-25 (181)
234 3nwj_A ATSK2; P loop, shikimat 97.0 0.0006 2E-08 56.6 4.3 40 14-55 30-72 (250)
235 1zuh_A Shikimate kinase; alpha 97.0 0.00055 1.9E-08 53.0 3.8 24 32-55 8-31 (168)
236 1nks_A Adenylate kinase; therm 97.0 0.00045 1.5E-08 54.6 3.4 25 33-57 3-27 (194)
237 3c8u_A Fructokinase; YP_612366 97.0 0.00092 3.1E-08 53.8 5.3 40 17-56 6-47 (208)
238 3fht_A ATP-dependent RNA helic 97.0 0.0062 2.1E-07 54.0 11.2 49 7-55 25-89 (412)
239 2iyv_A Shikimate kinase, SK; t 97.0 0.00054 1.8E-08 53.9 3.8 23 33-55 4-26 (184)
240 2rhm_A Putative kinase; P-loop 97.0 0.00053 1.8E-08 54.2 3.8 23 33-55 7-29 (193)
241 3ctd_A Putative ATPase, AAA fa 96.9 0.011 3.6E-07 46.7 10.9 88 219-308 33-122 (213)
242 1aky_A Adenylate kinase; ATP:A 96.9 0.00066 2.2E-08 55.1 4.2 23 33-55 6-28 (220)
243 1zp6_A Hypothetical protein AT 96.9 0.00036 1.2E-08 55.2 2.5 22 33-54 11-32 (191)
244 3t61_A Gluconokinase; PSI-biol 96.9 0.00055 1.9E-08 54.8 3.6 23 33-55 20-42 (202)
245 3fmp_B ATP-dependent RNA helic 96.9 0.0046 1.6E-07 56.4 10.2 42 95-136 234-277 (479)
246 3cm0_A Adenylate kinase; ATP-b 96.9 0.00059 2E-08 53.7 3.7 23 33-55 6-28 (186)
247 3exa_A TRNA delta(2)-isopenten 96.9 0.0031 1.1E-07 53.7 8.3 23 33-55 5-27 (322)
248 2c95_A Adenylate kinase 1; tra 96.9 0.00086 3E-08 53.1 4.7 23 33-55 11-33 (196)
249 2ewv_A Twitching motility prot 96.9 0.0016 5.6E-08 57.3 6.7 24 33-56 138-161 (372)
250 3vkw_A Replicase large subunit 96.9 0.0039 1.3E-07 55.8 9.0 107 17-135 142-269 (446)
251 2j0s_A ATP-dependent RNA helic 96.9 0.008 2.7E-07 53.4 11.3 41 95-135 178-219 (410)
252 2xau_A PRE-mRNA-splicing facto 96.9 0.0062 2.1E-07 58.9 11.0 28 25-54 105-132 (773)
253 1p9r_A General secretion pathw 96.9 0.0024 8.3E-08 57.0 7.5 50 8-58 145-194 (418)
254 1tf7_A KAIC; homohexamer, hexa 96.9 0.003 1E-07 58.4 8.5 36 18-55 27-65 (525)
255 3umf_A Adenylate kinase; rossm 96.8 0.00086 2.9E-08 54.3 4.2 23 33-55 31-53 (217)
256 1knq_A Gluconate kinase; ALFA/ 96.8 0.00072 2.5E-08 52.7 3.6 23 33-55 10-32 (175)
257 1e6c_A Shikimate kinase; phosp 96.8 0.00073 2.5E-08 52.4 3.7 23 33-55 4-26 (173)
258 3e2i_A Thymidine kinase; Zn-bi 96.8 0.0018 6E-08 52.0 5.9 36 95-133 100-135 (219)
259 4b3f_X DNA-binding protein smu 96.8 0.0024 8.3E-08 60.6 7.9 41 14-56 190-230 (646)
260 2ze6_A Isopentenyl transferase 96.8 0.00071 2.4E-08 56.3 3.6 23 33-55 3-25 (253)
261 2v9p_A Replication protein E1; 96.8 0.0013 4.3E-08 56.2 5.2 36 18-55 115-150 (305)
262 3eiq_A Eukaryotic initiation f 96.8 0.0084 2.9E-07 53.2 10.7 41 95-135 182-223 (414)
263 1zak_A Adenylate kinase; ATP:A 96.8 0.00085 2.9E-08 54.5 3.8 23 33-55 7-29 (222)
264 2plr_A DTMP kinase, probable t 96.8 0.00082 2.8E-08 54.0 3.6 24 33-56 6-29 (213)
265 2cdn_A Adenylate kinase; phosp 96.8 0.0011 3.9E-08 52.9 4.4 23 33-55 22-44 (201)
266 1tev_A UMP-CMP kinase; ploop, 96.8 0.00085 2.9E-08 53.1 3.6 23 33-55 5-27 (196)
267 2jeo_A Uridine-cytidine kinase 96.8 0.00075 2.6E-08 55.8 3.4 38 16-55 12-49 (245)
268 3sr0_A Adenylate kinase; phosp 96.8 0.00084 2.9E-08 54.0 3.6 22 34-55 3-24 (206)
269 2yvu_A Probable adenylyl-sulfa 96.8 0.00085 2.9E-08 52.9 3.6 25 33-57 15-39 (186)
270 2qor_A Guanylate kinase; phosp 96.8 0.00076 2.6E-08 54.1 3.3 23 33-55 14-36 (204)
271 3tr0_A Guanylate kinase, GMP k 96.8 0.00099 3.4E-08 53.2 4.0 23 33-55 9-31 (205)
272 2r9g_A AAA ATPase, central reg 96.8 0.026 9E-07 44.1 11.7 87 218-307 11-99 (204)
273 1lvg_A Guanylate kinase, GMP k 96.8 0.00095 3.3E-08 53.3 3.8 23 33-55 6-28 (198)
274 2pt5_A Shikimate kinase, SK; a 96.8 0.00098 3.4E-08 51.4 3.7 23 33-55 2-24 (168)
275 3fho_A ATP-dependent RNA helic 96.7 0.0052 1.8E-07 56.5 9.2 42 95-136 258-301 (508)
276 1ak2_A Adenylate kinase isoenz 96.7 0.0012 4.1E-08 54.1 4.4 24 32-55 17-40 (233)
277 2j41_A Guanylate kinase; GMP, 96.7 0.00099 3.4E-08 53.3 3.7 23 33-55 8-30 (207)
278 2jaq_A Deoxyguanosine kinase; 96.7 0.00098 3.3E-08 53.2 3.7 24 33-56 2-25 (205)
279 1ukz_A Uridylate kinase; trans 96.7 0.001 3.5E-08 53.2 3.8 23 33-55 17-39 (203)
280 3cmw_A Protein RECA, recombina 96.7 0.0044 1.5E-07 64.2 9.2 70 33-110 36-126 (1706)
281 2bwj_A Adenylate kinase 5; pho 96.7 0.00087 3E-08 53.2 3.4 23 33-55 14-36 (199)
282 3j16_B RLI1P; ribosome recycli 96.7 0.012 4.1E-07 55.2 11.5 41 96-136 239-281 (608)
283 2vli_A Antibiotic resistance p 96.7 0.00063 2.2E-08 53.3 2.5 23 33-55 7-29 (183)
284 1odf_A YGR205W, hypothetical 3 96.7 0.0023 7.9E-08 54.3 6.1 24 33-56 33-56 (290)
285 1rz3_A Hypothetical protein rb 96.7 0.0023 7.9E-08 51.1 5.8 40 17-56 5-47 (201)
286 1znw_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 53.4 3.8 29 25-55 16-44 (207)
287 1fuu_A Yeast initiation factor 96.7 0.0058 2E-07 53.9 8.9 42 95-136 161-203 (394)
288 1rif_A DAR protein, DNA helica 96.7 0.013 4.5E-07 49.3 10.8 38 15-55 115-152 (282)
289 3be4_A Adenylate kinase; malar 96.7 0.00095 3.2E-08 54.1 3.4 23 33-55 7-29 (217)
290 2bbw_A Adenylate kinase 4, AK4 96.7 0.0013 4.3E-08 54.5 4.2 24 32-55 28-51 (246)
291 1z6g_A Guanylate kinase; struc 96.7 0.0011 3.6E-08 53.9 3.6 34 20-55 14-47 (218)
292 3bge_A Predicted ATPase; struc 96.7 0.018 6E-07 45.0 10.1 85 221-307 7-93 (201)
293 2bdt_A BH3686; alpha-beta prot 96.7 0.00098 3.4E-08 52.6 3.3 23 33-55 4-26 (189)
294 1qf9_A UMP/CMP kinase, protein 96.7 0.00099 3.4E-08 52.6 3.3 23 33-55 8-30 (194)
295 1zd8_A GTP:AMP phosphotransfer 96.7 0.001 3.5E-08 54.3 3.4 23 33-55 9-31 (227)
296 3ozx_A RNAse L inhibitor; ATP 96.7 0.0096 3.3E-07 55.0 10.2 42 96-137 156-198 (538)
297 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 52.1 3.6 24 33-56 2-25 (195)
298 1cke_A CK, MSSA, protein (cyti 96.6 0.0012 4.1E-08 53.7 3.6 23 33-55 7-29 (227)
299 3dkp_A Probable ATP-dependent 96.6 0.02 6.8E-07 47.0 11.2 23 33-55 68-91 (245)
300 2v3c_C SRP54, signal recogniti 96.6 0.003 1E-07 56.7 6.4 24 33-56 101-124 (432)
301 2wwf_A Thymidilate kinase, put 96.6 0.0011 3.9E-08 53.2 3.3 24 33-56 12-35 (212)
302 3a00_A Guanylate kinase, GMP k 96.6 0.0011 3.8E-08 52.3 3.2 23 33-55 3-25 (186)
303 3tau_A Guanylate kinase, GMP k 96.6 0.0016 5.4E-08 52.4 4.1 23 33-55 10-32 (208)
304 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.5E-08 53.5 3.7 23 33-55 2-24 (223)
305 1ewq_A DNA mismatch repair pro 96.6 0.0028 9.7E-08 61.0 6.5 23 33-55 578-600 (765)
306 1ls1_A Signal recognition part 96.6 0.012 4E-07 50.1 9.6 25 33-57 100-124 (295)
307 1e4v_A Adenylate kinase; trans 96.6 0.0012 4.2E-08 53.3 3.3 23 33-55 2-24 (214)
308 1nn5_A Similar to deoxythymidy 96.6 0.0016 5.5E-08 52.4 4.0 24 33-56 11-34 (215)
309 1ex7_A Guanylate kinase; subst 96.6 0.0014 4.9E-08 51.7 3.5 23 33-55 3-25 (186)
310 2oap_1 GSPE-2, type II secreti 96.6 0.0015 5.2E-08 60.0 4.1 39 15-55 246-284 (511)
311 2pez_A Bifunctional 3'-phospho 96.5 0.0019 6.4E-08 50.5 4.1 23 33-55 7-29 (179)
312 3bh0_A DNAB-like replicative h 96.5 0.0055 1.9E-07 52.7 7.3 23 34-56 71-93 (315)
313 2j37_W Signal recognition part 96.5 0.028 9.5E-07 51.4 12.2 25 33-57 103-127 (504)
314 3bk7_A ABC transporter ATP-bin 96.5 0.017 5.7E-07 54.3 11.0 41 96-136 489-532 (607)
315 3ly5_A ATP-dependent RNA helic 96.5 0.0051 1.7E-07 51.3 6.7 40 95-134 200-240 (262)
316 2wsm_A Hydrogenase expression/ 96.5 0.0018 6.1E-08 52.4 3.8 43 14-56 13-55 (221)
317 1m7g_A Adenylylsulfate kinase; 96.5 0.0028 9.4E-08 51.0 4.8 24 33-56 27-50 (211)
318 2r6a_A DNAB helicase, replicat 96.5 0.028 9.5E-07 50.9 11.9 23 34-56 206-228 (454)
319 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.014 4.9E-07 44.8 8.7 22 33-54 9-30 (177)
320 2v54_A DTMP kinase, thymidylat 96.4 0.0014 4.7E-08 52.3 2.8 23 33-55 6-28 (204)
321 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0036 1.2E-07 56.4 5.6 36 18-56 141-176 (473)
322 1xjc_A MOBB protein homolog; s 96.4 0.0026 8.9E-08 49.2 4.1 28 31-58 4-31 (169)
323 3asz_A Uridine kinase; cytidin 96.4 0.002 6.9E-08 51.7 3.7 23 33-55 8-30 (211)
324 1z0j_A RAB-22, RAS-related pro 96.4 0.0097 3.3E-07 45.4 7.4 22 33-54 8-29 (170)
325 3szr_A Interferon-induced GTP- 96.4 0.0062 2.1E-07 57.3 7.2 26 30-55 44-69 (608)
326 1wp9_A ATP-dependent RNA helic 96.4 0.014 4.8E-07 52.6 9.5 37 15-55 11-47 (494)
327 1rj9_A FTSY, signal recognitio 96.4 0.0048 1.6E-07 52.7 5.9 26 33-58 104-129 (304)
328 4gzl_A RAS-related C3 botulinu 96.4 0.0029 9.9E-08 50.5 4.3 41 14-54 13-53 (204)
329 3ney_A 55 kDa erythrocyte memb 96.4 0.0023 7.7E-08 50.9 3.5 23 33-55 21-43 (197)
330 1jjv_A Dephospho-COA kinase; P 96.3 0.0018 6E-08 51.9 2.8 21 33-53 4-24 (206)
331 3r20_A Cytidylate kinase; stru 96.3 0.0024 8.3E-08 52.2 3.6 23 33-55 11-33 (233)
332 2if2_A Dephospho-COA kinase; a 96.3 0.002 6.8E-08 51.5 3.1 22 33-55 3-24 (204)
333 2hf9_A Probable hydrogenase ni 96.3 0.0039 1.3E-07 50.5 4.8 41 16-56 23-63 (226)
334 1sq5_A Pantothenate kinase; P- 96.3 0.0067 2.3E-07 51.9 6.5 24 33-56 82-105 (308)
335 3ozx_A RNAse L inhibitor; ATP 96.3 0.008 2.7E-07 55.6 7.3 41 96-136 403-446 (538)
336 1uj2_A Uridine-cytidine kinase 96.3 0.0027 9.3E-08 52.7 3.7 26 30-55 21-46 (252)
337 1uf9_A TT1252 protein; P-loop, 96.3 0.0027 9.3E-08 50.5 3.6 23 32-54 9-31 (203)
338 1kao_A RAP2A; GTP-binding prot 96.3 0.05 1.7E-06 41.0 10.8 22 33-54 5-26 (167)
339 3ake_A Cytidylate kinase; CMP 96.3 0.003 1E-07 50.4 3.9 23 33-55 4-26 (208)
340 3e70_C DPA, signal recognition 96.3 0.008 2.7E-07 51.9 6.7 25 34-58 132-156 (328)
341 2gza_A Type IV secretion syste 96.3 0.0034 1.2E-07 55.1 4.4 35 20-56 166-200 (361)
342 3tqc_A Pantothenate kinase; bi 96.3 0.0042 1.4E-07 53.4 4.9 23 34-56 95-117 (321)
343 3clv_A RAB5 protein, putative; 96.2 0.012 4.1E-07 46.3 7.3 22 33-54 9-30 (208)
344 2eyq_A TRCF, transcription-rep 96.2 0.042 1.4E-06 55.6 12.7 38 15-52 608-645 (1151)
345 1tf7_A KAIC; homohexamer, hexa 96.2 0.0094 3.2E-07 55.1 7.4 25 33-57 283-307 (525)
346 3t1o_A Gliding protein MGLA; G 96.2 0.013 4.4E-07 46.0 7.3 23 33-55 16-38 (198)
347 3thx_A DNA mismatch repair pro 96.2 0.0064 2.2E-07 59.8 6.4 21 33-53 664-684 (934)
348 3lnc_A Guanylate kinase, GMP k 96.2 0.0016 5.6E-08 53.2 1.9 23 33-55 29-52 (231)
349 4e22_A Cytidylate kinase; P-lo 96.2 0.0029 9.9E-08 52.5 3.4 23 33-55 29-51 (252)
350 3dz8_A RAS-related protein RAB 96.2 0.017 5.7E-07 45.3 7.8 23 33-55 25-47 (191)
351 3thx_B DNA mismatch repair pro 96.2 0.046 1.6E-06 53.6 12.2 22 33-54 675-696 (918)
352 3bc1_A RAS-related protein RAB 96.2 0.017 5.7E-07 45.1 7.7 22 33-54 13-34 (195)
353 1g8f_A Sulfate adenylyltransfe 96.2 0.0053 1.8E-07 56.1 5.3 43 15-57 377-421 (511)
354 3crm_A TRNA delta(2)-isopenten 96.2 0.0029 9.9E-08 54.3 3.3 23 33-55 7-29 (323)
355 4eaq_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 51.1 3.7 25 33-57 28-52 (229)
356 1z63_A Helicase of the SNF2/RA 96.1 0.022 7.6E-07 52.1 9.3 118 15-137 42-189 (500)
357 1z0f_A RAB14, member RAS oncog 96.1 0.02 6.8E-07 44.0 7.8 22 33-54 17-38 (179)
358 3p32_A Probable GTPase RV1496/ 96.1 0.011 3.8E-07 51.6 6.9 40 29-68 77-116 (355)
359 1u8z_A RAS-related protein RAL 96.1 0.022 7.7E-07 43.1 8.0 22 33-54 6-27 (168)
360 1z2a_A RAS-related protein RAB 96.1 0.0081 2.8E-07 45.7 5.4 22 33-54 7-28 (168)
361 1gtv_A TMK, thymidylate kinase 96.1 0.0014 4.8E-08 52.7 0.9 24 33-56 2-25 (214)
362 3lxw_A GTPase IMAP family memb 96.1 0.19 6.4E-06 41.3 13.9 22 33-54 23-44 (247)
363 2hup_A RAS-related protein RAB 96.1 0.055 1.9E-06 42.8 10.3 22 33-54 31-52 (201)
364 2cbz_A Multidrug resistance-as 96.0 0.0028 9.7E-08 52.1 2.6 43 96-138 145-191 (237)
365 1sgw_A Putative ABC transporte 96.0 0.0027 9.3E-08 51.3 2.5 28 26-55 32-59 (214)
366 3lv8_A DTMP kinase, thymidylat 96.0 0.008 2.7E-07 49.3 5.3 26 33-58 29-54 (236)
367 2db3_A ATP-dependent RNA helic 96.0 0.052 1.8E-06 48.7 11.2 40 8-49 57-111 (434)
368 1np6_A Molybdopterin-guanine d 96.0 0.0056 1.9E-07 47.7 4.1 26 31-56 6-31 (174)
369 2grj_A Dephospho-COA kinase; T 96.0 0.0046 1.6E-07 49.0 3.6 22 34-55 15-36 (192)
370 1b0u_A Histidine permease; ABC 96.0 0.0031 1.1E-07 52.7 2.7 27 27-55 30-56 (262)
371 2q6t_A DNAB replication FORK h 96.0 0.088 3E-06 47.4 12.5 23 34-56 203-225 (444)
372 3llu_A RAS-related GTP-binding 96.0 0.067 2.3E-06 42.0 10.5 22 33-54 22-43 (196)
373 1wrb_A DJVLGB; RNA helicase, D 96.0 0.027 9.3E-07 46.4 8.4 23 26-50 57-79 (253)
374 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0038 1.3E-07 51.8 3.1 26 27-54 27-52 (250)
375 3aez_A Pantothenate kinase; tr 96.0 0.0046 1.6E-07 53.0 3.7 25 33-57 92-116 (312)
376 3tw8_B RAS-related protein RAB 96.0 0.0071 2.4E-07 46.7 4.5 21 33-53 11-31 (181)
377 4tmk_A Protein (thymidylate ki 96.0 0.0099 3.4E-07 47.9 5.4 27 33-59 5-31 (213)
378 2qt1_A Nicotinamide riboside k 95.9 0.0032 1.1E-07 50.5 2.5 23 33-55 23-45 (207)
379 1g6h_A High-affinity branched- 95.9 0.0032 1.1E-07 52.4 2.6 28 26-55 30-57 (257)
380 3con_A GTPase NRAS; structural 95.9 0.021 7.3E-07 44.5 7.3 22 33-54 23-44 (190)
381 2xxa_A Signal recognition part 95.9 0.065 2.2E-06 48.1 11.2 36 33-68 102-138 (433)
382 2qm8_A GTPase/ATPase; G protei 95.9 0.0038 1.3E-07 54.2 3.1 25 33-57 57-81 (337)
383 1r8s_A ADP-ribosylation factor 95.9 0.19 6.6E-06 37.7 12.6 23 33-55 2-24 (164)
384 1wb9_A DNA mismatch repair pro 95.9 0.015 5.1E-07 56.3 7.4 23 33-55 609-631 (800)
385 2pze_A Cystic fibrosis transme 95.9 0.0035 1.2E-07 51.3 2.6 41 96-136 148-190 (229)
386 2zj8_A DNA helicase, putative 95.9 0.022 7.7E-07 54.7 8.7 28 26-55 36-64 (720)
387 2zu0_C Probable ATP-dependent 95.9 0.0042 1.4E-07 52.0 3.2 22 33-54 48-69 (267)
388 1nlf_A Regulatory protein REPA 95.9 0.0043 1.5E-07 52.3 3.3 24 33-56 32-55 (279)
389 2ce2_X GTPase HRAS; signaling 95.9 0.019 6.3E-07 43.4 6.7 22 33-54 5-26 (166)
390 2va8_A SSO2462, SKI2-type heli 95.9 0.02 6.9E-07 54.9 8.3 20 33-52 48-67 (715)
391 1j8m_F SRP54, signal recogniti 95.9 0.096 3.3E-06 44.4 11.6 24 34-57 101-124 (297)
392 1mv5_A LMRA, multidrug resista 95.9 0.0021 7.3E-08 53.0 1.2 23 33-55 30-52 (243)
393 3foz_A TRNA delta(2)-isopenten 95.9 0.0063 2.1E-07 51.8 4.1 23 33-55 12-34 (316)
394 1vht_A Dephospho-COA kinase; s 95.9 0.0051 1.7E-07 49.6 3.4 21 33-53 6-26 (218)
395 3kta_A Chromosome segregation 95.9 0.0062 2.1E-07 47.5 3.8 25 33-57 28-52 (182)
396 3ld9_A DTMP kinase, thymidylat 95.9 0.0082 2.8E-07 48.7 4.6 36 22-57 12-47 (223)
397 2bov_A RAla, RAS-related prote 95.9 0.034 1.2E-06 43.9 8.2 22 33-54 16-37 (206)
398 3j16_B RLI1P; ribosome recycli 95.8 0.025 8.7E-07 53.0 8.4 41 96-136 485-528 (608)
399 2qag_B Septin-6, protein NEDD5 95.8 0.0039 1.3E-07 55.6 2.8 37 19-55 30-66 (427)
400 2qmh_A HPR kinase/phosphorylas 95.8 0.0041 1.4E-07 49.3 2.6 23 33-55 36-58 (205)
401 2z0m_A 337AA long hypothetical 95.8 0.034 1.2E-06 47.6 8.7 22 33-54 33-54 (337)
402 3lxx_A GTPase IMAP family memb 95.8 0.084 2.9E-06 43.0 10.7 23 32-54 30-52 (239)
403 4dkx_A RAS-related protein RAB 95.8 0.019 6.5E-07 46.3 6.6 21 34-54 16-36 (216)
404 4a1f_A DNAB helicase, replicat 95.8 0.073 2.5E-06 46.0 10.6 23 34-56 49-71 (338)
405 1r2q_A RAS-related protein RAB 95.8 0.027 9.2E-07 42.8 7.2 22 33-54 8-29 (170)
406 2ihy_A ABC transporter, ATP-bi 95.8 0.0041 1.4E-07 52.4 2.6 27 27-55 45-71 (279)
407 4edh_A DTMP kinase, thymidylat 95.8 0.015 5.2E-07 46.8 5.9 27 33-59 8-34 (213)
408 3b9q_A Chloroplast SRP recepto 95.8 0.0053 1.8E-07 52.4 3.3 24 34-57 103-126 (302)
409 3d3q_A TRNA delta(2)-isopenten 95.8 0.0057 1.9E-07 52.9 3.4 23 33-55 9-31 (340)
410 3a8t_A Adenylate isopentenyltr 95.7 0.0045 1.5E-07 53.4 2.7 24 33-56 42-65 (339)
411 2yz2_A Putative ABC transporte 95.7 0.0045 1.5E-07 51.8 2.6 43 96-138 156-200 (266)
412 1ek0_A Protein (GTP-binding pr 95.7 0.029 1E-06 42.6 7.2 22 33-54 5-26 (170)
413 1z06_A RAS-related protein RAB 95.7 0.043 1.5E-06 42.8 8.2 22 33-54 22-43 (189)
414 2i1q_A DNA repair and recombin 95.7 0.018 6.2E-07 49.5 6.5 22 34-55 101-122 (322)
415 2efe_B Small GTP-binding prote 95.7 0.034 1.2E-06 42.8 7.6 22 33-54 14-35 (181)
416 1zbd_A Rabphilin-3A; G protein 95.7 0.034 1.2E-06 43.9 7.7 22 33-54 10-31 (203)
417 2a9k_A RAS-related protein RAL 95.7 0.033 1.1E-06 43.1 7.4 22 33-54 20-41 (187)
418 2www_A Methylmalonic aciduria 95.7 0.017 5.8E-07 50.3 6.2 26 31-56 74-99 (349)
419 1zj6_A ADP-ribosylation factor 95.7 0.044 1.5E-06 42.6 8.1 26 28-53 13-38 (187)
420 1q3t_A Cytidylate kinase; nucl 95.7 0.0094 3.2E-07 48.8 4.3 23 33-55 18-40 (236)
421 1m7b_A RND3/RHOE small GTP-bin 95.6 0.01 3.4E-07 46.3 4.2 22 33-54 9-30 (184)
422 3cr8_A Sulfate adenylyltranfer 95.6 0.0071 2.4E-07 56.0 3.8 40 16-57 352-395 (552)
423 2oca_A DAR protein, ATP-depend 95.6 0.062 2.1E-06 49.2 10.1 38 15-55 115-152 (510)
424 3bgw_A DNAB-like replicative h 95.6 0.082 2.8E-06 47.6 10.6 23 34-56 200-222 (444)
425 2ged_A SR-beta, signal recogni 95.6 0.017 5.7E-07 45.3 5.5 23 32-54 49-71 (193)
426 3q85_A GTP-binding protein REM 95.6 0.02 6.9E-07 43.6 5.8 21 33-53 4-24 (169)
427 2z83_A Helicase/nucleoside tri 95.6 0.034 1.2E-06 50.4 8.1 31 23-55 15-46 (459)
428 4dsu_A GTPase KRAS, isoform 2B 95.6 0.039 1.3E-06 42.8 7.5 22 33-54 6-27 (189)
429 2f6r_A COA synthase, bifunctio 95.6 0.0077 2.6E-07 50.8 3.5 21 33-53 77-97 (281)
430 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.018 6.3E-07 44.6 5.5 22 33-54 7-28 (186)
431 2fh5_B SR-beta, signal recogni 95.6 0.074 2.5E-06 42.3 9.3 24 32-55 8-31 (214)
432 3q72_A GTP-binding protein RAD 95.6 0.018 6E-07 43.8 5.3 21 33-53 4-24 (166)
433 2gk6_A Regulator of nonsense t 95.5 0.014 4.8E-07 55.1 5.5 39 15-56 182-220 (624)
434 3tkl_A RAS-related protein RAB 95.5 0.026 8.9E-07 44.2 6.4 22 33-54 18-39 (196)
435 4a4z_A Antiviral helicase SKI2 95.5 0.043 1.5E-06 54.6 9.2 26 26-53 51-76 (997)
436 2bme_A RAB4A, RAS-related prot 95.5 0.028 9.6E-07 43.6 6.5 22 33-54 12-33 (186)
437 1m8p_A Sulfate adenylyltransfe 95.5 0.013 4.3E-07 54.7 4.9 24 33-56 398-421 (573)
438 3l9o_A ATP-dependent RNA helic 95.5 0.047 1.6E-06 55.0 9.2 27 26-54 196-222 (1108)
439 3tqf_A HPR(Ser) kinase; transf 95.5 0.0082 2.8E-07 46.4 2.9 22 33-54 18-39 (181)
440 2f1r_A Molybdopterin-guanine d 95.5 0.0045 1.5E-07 48.1 1.6 25 33-57 4-28 (171)
441 2og2_A Putative signal recogni 95.5 0.0081 2.8E-07 52.5 3.3 24 34-57 160-183 (359)
442 2zts_A Putative uncharacterize 95.5 0.0045 1.5E-07 50.9 1.6 21 34-54 33-53 (251)
443 1a7j_A Phosphoribulokinase; tr 95.4 0.0058 2E-07 51.9 2.3 24 33-56 7-30 (290)
444 3reg_A RHO-like small GTPase; 95.4 0.077 2.6E-06 41.5 8.8 22 33-54 25-46 (194)
445 3v9p_A DTMP kinase, thymidylat 95.4 0.0075 2.5E-07 49.1 2.8 24 33-56 27-50 (227)
446 1tq4_A IIGP1, interferon-induc 95.4 0.014 4.9E-07 51.9 4.9 41 15-55 35-93 (413)
447 1c1y_A RAS-related protein RAP 95.4 0.03 1E-06 42.4 6.2 22 33-54 5-26 (167)
448 2h92_A Cytidylate kinase; ross 95.4 0.0095 3.2E-07 48.0 3.4 23 33-55 5-27 (219)
449 2g6b_A RAS-related protein RAB 95.4 0.04 1.4E-06 42.4 6.9 22 33-54 12-33 (180)
450 3gmt_A Adenylate kinase; ssgci 95.4 0.011 3.7E-07 48.1 3.7 22 34-55 11-32 (230)
451 2xgj_A ATP-dependent RNA helic 95.4 0.095 3.2E-06 52.2 11.1 34 16-52 89-122 (1010)
452 3kkq_A RAS-related protein M-R 95.4 0.036 1.2E-06 42.9 6.6 21 34-54 21-41 (183)
453 2ffh_A Protein (FFH); SRP54, s 95.4 0.12 4E-06 46.2 10.6 26 34-59 101-126 (425)
454 2ew1_A RAS-related protein RAB 95.4 0.029 9.8E-07 44.6 6.1 23 33-55 28-50 (201)
455 2p5s_A RAS and EF-hand domain 95.4 0.032 1.1E-06 44.0 6.4 22 33-54 30-51 (199)
456 1zd9_A ADP-ribosylation factor 95.4 0.11 3.7E-06 40.4 9.5 22 33-54 24-45 (188)
457 2bbs_A Cystic fibrosis transme 95.4 0.0065 2.2E-07 51.5 2.4 41 96-136 177-219 (290)
458 2gks_A Bifunctional SAT/APS ki 95.4 0.018 6.2E-07 53.3 5.5 42 15-56 354-397 (546)
459 2il1_A RAB12; G-protein, GDP, 95.4 0.033 1.1E-06 43.7 6.4 21 34-54 29-49 (192)
460 2v6i_A RNA helicase; membrane, 95.3 0.083 2.8E-06 47.4 9.7 20 33-52 4-24 (431)
461 1gwn_A RHO-related GTP-binding 95.3 0.014 4.9E-07 46.5 4.2 22 33-54 30-51 (205)
462 3q3j_B RHO-related GTP-binding 95.3 0.017 5.9E-07 46.3 4.7 22 33-54 29-50 (214)
463 2dyk_A GTP-binding protein; GT 95.3 0.012 4.1E-07 44.5 3.5 23 32-54 2-24 (161)
464 4f92_B U5 small nuclear ribonu 95.3 0.093 3.2E-06 55.2 11.1 32 19-52 932-963 (1724)
465 2fwr_A DNA repair protein RAD2 95.3 0.049 1.7E-06 49.3 8.2 39 14-55 94-132 (472)
466 2fg5_A RAB-22B, RAS-related pr 95.3 0.041 1.4E-06 43.1 6.8 22 33-54 25-46 (192)
467 1f2t_A RAD50 ABC-ATPase; DNA d 95.3 0.012 4E-07 44.6 3.4 25 33-57 25-49 (149)
468 2yhs_A FTSY, cell division pro 95.3 0.0093 3.2E-07 54.1 3.2 25 33-57 295-319 (503)
469 2wjy_A Regulator of nonsense t 95.3 0.023 7.7E-07 55.2 6.1 40 15-57 358-397 (800)
470 3tbk_A RIG-I helicase domain; 95.3 0.19 6.4E-06 46.2 12.1 33 20-55 11-43 (555)
471 2j1l_A RHO-related GTP-binding 95.3 0.026 9E-07 45.2 5.6 22 33-54 36-57 (214)
472 2gf0_A GTP-binding protein DI- 95.2 0.06 2.1E-06 42.2 7.5 22 33-54 10-31 (199)
473 4a2p_A RIG-I, retinoic acid in 95.2 0.18 6.3E-06 46.3 11.9 34 19-55 13-46 (556)
474 2f9l_A RAB11B, member RAS onco 95.2 0.012 4.1E-07 46.6 3.3 23 33-55 7-29 (199)
475 1lw7_A Transcriptional regulat 95.2 0.0089 3E-07 52.5 2.8 24 33-56 172-195 (365)
476 1oix_A RAS-related protein RAB 95.2 0.011 3.7E-07 46.6 3.1 22 34-55 32-53 (191)
477 3eph_A TRNA isopentenyltransfe 95.2 0.013 4.4E-07 51.7 3.7 24 33-56 4-27 (409)
478 2ocp_A DGK, deoxyguanosine kin 95.2 0.012 4.1E-07 48.3 3.3 24 33-56 4-27 (241)
479 1zu4_A FTSY; GTPase, signal re 95.2 0.015 5.1E-07 50.0 4.0 25 34-58 108-132 (320)
480 3pqc_A Probable GTP-binding pr 95.1 0.13 4.6E-06 39.8 9.3 23 32-54 24-46 (195)
481 1oxx_K GLCV, glucose, ABC tran 95.1 0.0054 1.8E-07 53.5 1.1 27 27-55 29-55 (353)
482 3ux8_A Excinuclease ABC, A sub 95.1 0.093 3.2E-06 49.9 9.6 41 97-137 565-607 (670)
483 1x3s_A RAS-related protein RAB 95.1 0.042 1.4E-06 42.9 6.2 22 33-54 17-38 (195)
484 3tmk_A Thymidylate kinase; pho 95.1 0.014 4.8E-07 47.1 3.3 25 33-57 7-31 (216)
485 2obl_A ESCN; ATPase, hydrolase 95.1 0.014 4.7E-07 50.9 3.5 37 17-56 60-96 (347)
486 2yc2_C IFT27, small RAB-relate 95.0 0.026 9E-07 44.6 4.9 22 33-54 22-43 (208)
487 4ag6_A VIRB4 ATPase, type IV s 95.0 0.02 7E-07 50.6 4.6 28 31-58 35-62 (392)
488 2f7s_A C25KG, RAS-related prot 95.0 0.04 1.4E-06 44.0 5.9 22 33-54 27-48 (217)
489 2atx_A Small GTP binding prote 95.0 0.021 7.3E-07 44.8 4.1 22 33-54 20-41 (194)
490 4hlc_A DTMP kinase, thymidylat 95.0 0.048 1.6E-06 43.5 6.2 23 34-56 5-27 (205)
491 2zpa_A Uncharacterized protein 94.9 0.036 1.2E-06 52.2 6.1 92 19-117 181-276 (671)
492 3cph_A RAS-related protein SEC 94.9 0.048 1.7E-06 43.3 6.2 22 33-54 22-43 (213)
493 4a2q_A RIG-I, retinoic acid in 94.9 0.2 6.8E-06 48.7 11.5 34 19-55 254-287 (797)
494 4dhe_A Probable GTP-binding pr 94.9 0.19 6.4E-06 40.1 9.7 24 31-54 29-52 (223)
495 1ko7_A HPR kinase/phosphatase; 94.8 0.025 8.5E-07 48.3 4.4 22 33-54 146-167 (314)
496 2dpy_A FLII, flagellum-specifi 94.8 0.019 6.5E-07 51.6 3.9 36 17-55 146-181 (438)
497 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.018 6E-07 52.2 3.7 28 26-55 135-162 (460)
498 3hjn_A DTMP kinase, thymidylat 94.8 0.022 7.4E-07 45.3 3.8 25 34-58 3-27 (197)
499 3hdt_A Putative kinase; struct 94.8 0.018 6.2E-07 46.7 3.4 23 33-55 16-38 (223)
500 2axn_A 6-phosphofructo-2-kinas 94.8 0.017 6E-07 53.1 3.6 24 33-56 37-60 (520)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5e-48 Score=342.05 Aligned_cols=309 Identities=31% Similarity=0.587 Sum_probs=283.0
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
+||||++|++++||+++++.|..++++|++||++|+||||+||||+++++++.+.+..+...+.+++.++..+.+.+++.
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999987665566788888777778888888
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHH
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~ 161 (317)
+..+.+.... ..++++|+||||+|.++.+.+++|++++|+++.++.+|+++|.+.++.++++|||..++|++++.+++.
T Consensus 97 i~~~~~~~~~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~ 175 (340)
T 1sxj_C 97 IKDFASTRQI-FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIE 175 (340)
T ss_dssp HHHHHHBCCS-SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhhccc-CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHH
Confidence 8777653221 124589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCC-----cccHHHHHhhcCCCCHHHHHHHHHHHhcCC
Q psy879 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG-----HVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236 (317)
Q Consensus 162 ~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~-----~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~ 236 (317)
+++..++..+++.++++++..++..++||+|++++.++.++.... .|+.+++.++++......++++++.+..++
T Consensus 176 ~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~~~ 255 (340)
T 1sxj_C 176 RRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDD 255 (340)
T ss_dssp HHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 999999998999999999999999999999999999988765333 699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 237 MKDSYKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 237 ~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
..+++.++.+++. .|++|.+++..+.+++..+.++ .....++++.+.++++++++|+|+.++||.|++++|.+..
T Consensus 256 ~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~~~ 332 (340)
T 1sxj_C 256 WGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFE 332 (340)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 9999999999998 9999999999999999877777 8889999999999999999999999999999999997654
No 2
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=5.4e-46 Score=326.17 Aligned_cols=310 Identities=40% Similarity=0.750 Sum_probs=279.9
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
++||+|++|++++|++++++.+..++.++..+|++|+||||+|||++++++++.+.+......++++++.+..+.+.+++
T Consensus 8 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (319)
T 2chq_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH 87 (319)
T ss_dssp TTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSH
T ss_pred HHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHH
Confidence 47999999999999999999999999999988999999999999999999999987665555677788776656666666
Q ss_pred HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHH
Q psy879 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL 160 (317)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~ 160 (317)
.+..+.... ....+++++++|||+|.++.+.+++|++++++++.++++|+++|.+.++.+++.|||..+.|++++.+++
T Consensus 88 ~~~~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 88 KIKEFARTA-PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166 (319)
T ss_dssp HHHHHHHSC-CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHH
T ss_pred HHHHHHhcC-CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHH
Confidence 555554221 1122568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHH
Q psy879 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240 (317)
Q Consensus 161 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~ 240 (317)
..++..++.++|+.+++++++.++..++||+|.+++.++.++...+.|+.+++.+++....+..++++++++..++...+
T Consensus 167 ~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a 246 (319)
T 2chq_A 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFMEA 246 (319)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999988776678999999999999999999999999999999999
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 241 YKIIHHLYK-LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 241 ~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
+.++.+++. .|++|..++..+.+.+..+.++.....++++.+.+++.+++.|+|+.+++|.|+.++|.++.
T Consensus 247 ~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~~ 318 (319)
T 2chq_A 247 RELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTLAK 318 (319)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 999999987 99999999999999998767888889999999999999999999999999999999997643
No 3
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=3.7e-45 Score=321.97 Aligned_cols=309 Identities=44% Similarity=0.751 Sum_probs=277.8
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
+||+|++|++++|++++++.+..++.+++.+|++|+||||+|||++++++++.+.+......++++++.+..+.+.+++.
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREK 96 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHH
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999865544445777777665555556655
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHH
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~ 161 (317)
+..+.... ....+++++++|||+|.++.+.+++|++++++++.++++|++++.+.++.+++.+||..+.|++++.+++.
T Consensus 97 ~~~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 97 VKEFARTK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 175 (327)
T ss_dssp HHHHHHSC-CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHH
T ss_pred HHHHHhhC-CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHH
Confidence 55544221 11115689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHH
Q psy879 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241 (317)
Q Consensus 162 ~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 241 (317)
.++..++..+++.+++++++.++..++||+|.+++.++.++.....|+.+++..++....+..++++++++..++...++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 255 (327)
T 1iqp_A 176 KRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFLKAR 255 (327)
T ss_dssp HHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999888766789999999999999999999999999999999999
Q ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 242 KIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 242 ~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
.++++++ ..|++|..++..+.+.+..+.++.....++++.+.+++.++++|.|+.+++|.|+.++|.+..
T Consensus 256 ~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~~ 326 (327)
T 1iqp_A 256 EKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIGK 326 (327)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 9999998 899999999999999888777899999999999999999999999999999999999997654
No 4
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4.4e-44 Score=314.52 Aligned_cols=307 Identities=61% Similarity=0.986 Sum_probs=275.6
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
+||+|.+|++++|++++++.+..++.+++++|++|+||+|+|||++++.+++.+.+......++++++.+..+.+.+++.
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQ 92 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTH
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHH
Confidence 68999999999999999999999999999889999999999999999999999866554555778888776678888877
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHH
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~ 161 (317)
+..+.........+++++++|||+|.++.+.+++|++++++++.++++|++|+...++.++++|||..+.|++++.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 93 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172 (323)
T ss_dssp HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHH
Confidence 77665332222234589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHH
Q psy879 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSY 241 (317)
Q Consensus 162 ~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 241 (317)
.++..++..+++.+++++++.++..++||+|.+++.++..+...+.++.++|.+++.......++++++. ++...++
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~~~~~---~~~~~~l 249 (323)
T 1sxj_B 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLA---SNLEDSI 249 (323)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHHTSCCHHHHHHHHSC---SSHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHCCCCHHHHHHHHhc---CCHHHHH
Confidence 9999999999999999999999999999999999999987765567999999999999888889998887 7888999
Q ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 242 KIIHH-LYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 242 ~~~~~-l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
.++.. ++..|+++.+++..+.+++..+. ++.....++++.+.+++.++++|+|+.+++|.|+.+++.+..
T Consensus 250 ~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~~~ 321 (323)
T 1sxj_B 250 QILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNN 321 (323)
T ss_dssp HHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhhcc
Confidence 99998 88899999999999999888654 788889999999999999999999999999999999998755
No 5
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.2e-43 Score=315.55 Aligned_cols=307 Identities=35% Similarity=0.569 Sum_probs=272.0
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CCCCceEEecCCCCcChHHHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-SFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
+||+|++|++++|++++++.+..++..+.++|++|+||||+|||++++++++.+.++ .....+.++++++..+...+++
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE 108 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH
Confidence 699999999999999999999999999988899999999999999999999997542 2334577788876667777776
Q ss_pred HHHHHHhhccc---------CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceee
Q psy879 81 KIKMFAQQKVT---------LPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLR 151 (317)
Q Consensus 81 ~~~~~~~~~~~---------~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~ 151 (317)
.+..+...... .+.+.+++++|||++.+..+.+++|++++++++.++++|+++|.+..+.+++++||..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 66555443210 122467899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh--CC----CcccHHHHHhhcCCCCHHHH
Q psy879 152 YNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GF----GHVTAEYVFKVCDEPHPLAV 225 (317)
Q Consensus 152 f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~--~~----~~i~~~~v~~~~~~~~~~~i 225 (317)
|++++.+++..++..++..+++.+++++++.++..++||+|.+++.++.++. +. ..|+.++|.+++.......+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~ 268 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDIL 268 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999987654 21 17999999999998888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHH
Q psy879 226 KEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLA 304 (317)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~ 304 (317)
+++++++..++...++.+++++...|++|..|+..+.+.+... +++.....+++..+.++++++++|.|+.+++|.|++
T Consensus 269 ~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~ 348 (353)
T 1sxj_D 269 IEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLV 348 (353)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999888776554 678888999999999999999999999999999999
Q ss_pred HHHH
Q psy879 305 RLCI 308 (317)
Q Consensus 305 ~~~~ 308 (317)
++|.
T Consensus 349 ~~~~ 352 (353)
T 1sxj_D 349 KISQ 352 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9985
No 6
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4.1e-43 Score=312.42 Aligned_cols=307 Identities=25% Similarity=0.398 Sum_probs=249.5
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHH-hcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCC-----------------
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFS-SSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKD----------------- 62 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l-~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~----------------- 62 (317)
++||||++|++++||+++++.+..++ ..++.+|++|+||+|+||||+++++++.+.++..+.
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccce
Confidence 58999999999999999999999999 888888999999999999999999999876544221
Q ss_pred -------ceEEecCCCCcCh--HHHHHHHHHHHhhcccC------C-CCceeEEEEeCCCCCCHHHHHHHHHHhhhccCC
Q psy879 63 -------AVLELNASNDRGI--DTVRNKIKMFAQQKVTL------P-PGRHKIVILDEADSMTDGAQQALRRTMEIYSNT 126 (317)
Q Consensus 63 -------~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~------~-~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~ 126 (317)
.+++++....... ..+++.+..+....... . .++++++||||++.++...+++|++++++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 85 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp -CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred eeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 2334444321111 13555555543322110 0 247899999999999999999999999999999
Q ss_pred ceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHhhhCC
Q psy879 127 TRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT-NDGLEAIVFTAQGDMRQALNNLQSTHNGF 205 (317)
Q Consensus 127 ~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~~~gd~r~~i~~l~~~~~~~ 205 (317)
+.+|++|+.+.++.++++|||..++|++++.+++..++..++.++|+.++ +++++.++..++||+|++++.++.++...
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999877644
Q ss_pred C-cccHHHHHhhcCCCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCChHHHHHHH
Q psy879 206 G-HVTAEYVFKVCDEPHPLAVKEMLLNCVEGN----MKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSII 279 (317)
Q Consensus 206 ~-~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~ 279 (317)
. .|+.+++ +.....+..++++++++..++ ...+...+.+++..|+++.+|+..+...+... .++.....+++
T Consensus 245 ~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l~~~~ 322 (354)
T 1sxj_E 245 ELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSII 322 (354)
T ss_dssp TTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHH
T ss_pred CCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3 5766543 222333457899999988754 44556667777788999999998887655433 37888899999
Q ss_pred HHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 280 QEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 280 ~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
+++++.|+++++|.+++++||.+++++|.+
T Consensus 323 ~~l~~~d~~l~~g~~~~~~le~~~~~~~~~ 352 (354)
T 1sxj_E 323 EYSSVFDERLSLGNKAIFHLEGFIAKVMCC 352 (354)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865
No 7
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=6.8e-43 Score=307.30 Aligned_cols=294 Identities=26% Similarity=0.391 Sum_probs=247.9
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR 79 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~ 79 (317)
++||||++|++++|++++++.+..++..+..++ ++++||||+|||++++++++.+ +..+++++++. .+.+.++
T Consensus 17 ~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~-~~~~~i~ 90 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSD-CKIDFVR 90 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTT-CCHHHHH
T ss_pred HHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEcccc-cCHHHHH
Confidence 379999999999999999999999999999888 7888999999999999999986 34578888765 4477777
Q ss_pred HHHHHHHhhcccCCCCceeEEEEeCCCCCC-HHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHH
Q psy879 80 NKIKMFAQQKVTLPPGRHKIVILDEADSMT-DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDA 158 (317)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~ 158 (317)
+.+..+..... ..+.+++++|||+|.++ .+.++.|++++++++.++.+|+++|.+.++.++++|||..++|++|+.+
T Consensus 91 ~~~~~~~~~~~--~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~ 168 (324)
T 3u61_B 91 GPLTNFASAAS--FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDE 168 (324)
T ss_dssp THHHHHHHBCC--CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHH
T ss_pred HHHHHHHhhcc--cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHH
Confidence 76666554421 23578999999999999 9999999999999999999999999999999999999999999999988
Q ss_pred H-------HHHHHHHHHHHcCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHHH
Q psy879 159 Q-------LLSKVIEICEKENISHTN-DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLL 230 (317)
Q Consensus 159 ~-------~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~ 230 (317)
+ +..++...+..+++.+++ ++++.++..++||+|.+++.|+.++ ..+.|+.+++..++.. .+.++++++
T Consensus 169 e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~--~~~i~~~~~ 245 (324)
T 3u61_B 169 DKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTND--RGAIDDVLE 245 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC--------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCC--HHHHHHHHH
Confidence 7 456677778889999998 9999999999999999999999988 5567999999988766 457889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHh
Q psy879 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~ 309 (317)
++..++..+++.++.+++. +|..|+..+...+.. .+++....++++++++.|+++++|.++.+++|.|++++|..
T Consensus 246 ~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~-~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~ 320 (324)
T 3u61_B 246 SLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS-RVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLACE 320 (324)
T ss_dssp HHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999866 899999887654432 46788899999999999999999999999999999999864
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=2.4e-40 Score=296.47 Aligned_cols=307 Identities=23% Similarity=0.297 Sum_probs=261.5
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
+||||++|++++|++++++.+..++..++.+| ++|+||+|+|||++++++++.+.+....
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCC
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCC
Confidence 68999999999999999999999999998888 8999999999999999999998764321
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++.++.....+.+.+++.+..+...+ ..++++|++|||+|.++.+.+++|++++++++.++.+|++++...++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAP---ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCC---SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhcc---ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 1234444443345556666666554333 2367899999999999999999999999999999999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcCCC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~~~ 220 (317)
++.|||..++|++++.+++..++..++..+|+.+++++++.++..++||+|.+.+.++.+.. ..+.|+.++|.+++...
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHTTCC
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999987654 55789999999999999
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------CCChHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTL--------------------------DIPEPL 274 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--------------------------~~~~~~ 274 (317)
....++++++++..++...++.++..+...|.++..++..+.+.+..+ .++...
T Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 324 (373)
T 1jr3_A 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 (373)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHHHHhCCHHH
Confidence 888999999999999999999999999999999998887765443221 112222
Q ss_pred HHHHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHHhhc
Q psy879 275 KLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGS 311 (317)
Q Consensus 275 ~~~~~~~l~~~~~~l~~g~~~~l~le~~~~~~~~~~~ 311 (317)
..++++.+.+++.+++.+.|+++.+|.++.+++...+
T Consensus 325 l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~~~ 361 (373)
T 1jr3_A 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Confidence 3448889999999999988999999999999997644
No 9
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2e-39 Score=280.58 Aligned_cols=280 Identities=19% Similarity=0.161 Sum_probs=232.9
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-CCCCCCceEEecCCC-CcChHHHHHHHHHHHhhccc
Q psy879 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPSFKDAVLELNASN-DRGIDTVRNKIKMFAQQKVT 91 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 91 (317)
||+++++.|...+++|+.|+|+||||||+|||++++++++.+. +......+.++++.+ ..+++++++.+..+...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~- 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPE- 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS-
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc-
Confidence 7899999999999999966799999999999999999998642 222244677788764 6888999998887765553
Q ss_pred CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHc
Q psy879 92 LPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171 (317)
Q Consensus 92 ~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~ 171 (317)
.++++|+||||+|.|+.+++++|+++||+||++++||++|+++.+++++|+|| .++|++++++++.+||..++
T Consensus 80 --~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~--- 152 (305)
T 2gno_A 80 --LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI--- 152 (305)
T ss_dssp --SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH---
T ss_pred --cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh---
Confidence 36799999999999999999999999999999999999999999999999999 99999999999999999987
Q ss_pred CCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhC--------CCcccHHHHHhhcCCCCHH--HHHHHHHHHhcCCHHHHH
Q psy879 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG--------FGHVTAEYVFKVCDEPHPL--AVKEMLLNCVEGNMKDSY 241 (317)
Q Consensus 172 ~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~--------~~~i~~~~v~~~~~~~~~~--~i~~l~~~~~~~~~~~~~ 241 (317)
+ ++++++ ..+.||+|.+++.++..... ...-+.++|..+++.+.++ .++++++++..++..+++
T Consensus 153 ~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~a~ 226 (305)
T 2gno_A 153 G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFF 226 (305)
T ss_dssp T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHCCCHHHHH
Confidence 3 556655 55799999999988632110 0011467888888888755 899999999999999999
Q ss_pred HHHHHHHH--cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHhc---CCCcHHHHHHHHHHHHHh
Q psy879 242 KIIHHLYK--LGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE---GVNSLLQLSGLLARLCIV 309 (317)
Q Consensus 242 ~~~~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---g~~~~l~le~~~~~~~~~ 309 (317)
..+++|+. .|++|.+++..+++.+...+ +..+.+.+..++.+++++.. |.|+.++|+.++.++|..
T Consensus 227 ~~~~~l~~~~~g~~~~~~i~~~~r~l~~~~--~~~~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~~ 297 (305)
T 2gno_A 227 ALFDQVTNTITGKDAFLLIQRLTRIILHEN--TWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRER 297 (305)
T ss_dssp HHHHHHHHHSCTHHHHHHHHHHHHHHHHTS--CCCSHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999988 89999988888888776444 33445677799999999987 889999999999999954
No 10
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=4.7e-36 Score=264.21 Aligned_cols=284 Identities=20% Similarity=0.238 Sum_probs=223.4
Q ss_pred cCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------CceEEecCC--
Q psy879 13 VGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK-------------------DAVLELNAS-- 70 (317)
Q Consensus 13 ~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~-------------------~~~~~~~~~-- 70 (317)
-.++++.+.+...+++|+++| |+|+||+|+|||++++++++.+.|.... ..+..+++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 357888999999999999998 9999999999999999999999875421 335566653
Q ss_pred -CCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcce
Q psy879 71 -NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAM 149 (317)
Q Consensus 71 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~ 149 (317)
...+.+++++.+..+...+. .++++|+||||+|.|+.+++++|++++|+|++++++|++|+++++++++|+|||+.
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~~---~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~ 161 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHAR---LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRL 161 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCT---TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHHHhhccc---cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhccee
Confidence 45778889888777655542 36799999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcCCCCHHHHHHHH
Q psy879 150 LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEML 229 (317)
Q Consensus 150 i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~ 229 (317)
++|++++++++.+||..++ .++++++..++..++||+|.+++.++........++.+.+..+... ..+++++
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 233 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPS---GDWYSLL 233 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHHH---CCCGGGH
T ss_pred eeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHhC---hHHHHHH
Confidence 9999999999999999874 6789999999999999999999999765443334455555554431 1233455
Q ss_pred HHHhcCCHHHHHHHHH----HHHHcCC-----CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHh--cCCCcHHH
Q psy879 230 LNCVEGNMKDSYKIIH----HLYKLGY-----APEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS--EGVNSLLQ 298 (317)
Q Consensus 230 ~~~~~~~~~~~~~~~~----~l~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~g~~~~l~ 298 (317)
+.+.+.+....+.++. +++.... ...+....+.+++. .++.....++++.+.+.+.+++ .|+|++++
T Consensus 234 ~~l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~l~~~~~~l~~~~~~l~~~~~~n~~l~ 311 (334)
T 1a5t_A 234 AALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELAN--HLSPSRLQAILGDVCHIREQLMSVTGINRELL 311 (334)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 5665566666655544 4432211 11123344555555 4677788899999999999999 89999999
Q ss_pred HHHHHHHHHHh
Q psy879 299 LSGLLARLCIV 309 (317)
Q Consensus 299 le~~~~~~~~~ 309 (317)
+|.++.+++..
T Consensus 312 le~ll~~l~~~ 322 (334)
T 1a5t_A 312 ITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=7.7e-35 Score=264.49 Aligned_cols=293 Identities=19% Similarity=0.276 Sum_probs=232.0
Q ss_pred cccCCCCCCcccCCHHHH---HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 2 EKYRPQTFSDIVGNEDTV---ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
++|||++|++++||++++ +.|...+..+.+++++|+||||||||++++++++.+. ..++.+++. ..+...+
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~-----~~f~~l~a~-~~~~~~i 91 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN-----ADVERISAV-TSGVKEI 91 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEETT-TCCHHHH
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEEec-cCCHHHH
Confidence 689999999999999999 7899999999998899999999999999999999862 346677664 3566677
Q ss_pred HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC--CCcCchhHhhhcceeeecCCC
Q psy879 79 RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN--SEKIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~--~~~l~~~i~sR~~~i~f~~~~ 156 (317)
++.+........ .+.+.++||||+|.++...++.|++.+++ ..+.+|++|+. ...+.+++.|||.++.|++++
T Consensus 92 r~~~~~a~~~~~---~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~ 166 (447)
T 3pvs_A 92 REAIERARQNRN---AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLS 166 (447)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCC
T ss_pred HHHHHHHHHhhh---cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcC
Confidence 777665544332 25789999999999999999999999997 55677777643 357899999999999999999
Q ss_pred HHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhC-------CCcccHHHHHhhcCCC--
Q psy879 157 DAQLLSKVIEICEK-------ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG-------FGHVTAEYVFKVCDEP-- 220 (317)
Q Consensus 157 ~~~~~~~l~~~~~~-------~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~-------~~~i~~~~v~~~~~~~-- 220 (317)
.+++..++...+.. .++.+++++++.++..++||+|.+++.|+.++.. ...|+.+++.+++...
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhh
Confidence 99999999999886 5677999999999999999999999999986641 1369999999988765
Q ss_pred --------CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhHHhc
Q psy879 221 --------HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRISE 291 (317)
Q Consensus 221 --------~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~ 291 (317)
+.+.++.+++++...+.+.++.|+..|++.|++|..|.+.+.+.+ +.+|+.+.....+.....+.-. .-
T Consensus 247 ~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~--~~ 324 (447)
T 3pvs_A 247 RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFT--RV 324 (447)
T ss_dssp C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHH--HS
T ss_pred ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHH--Hh
Confidence 346788999999999999999999999999999999999998875 4446655443333333322222 33
Q ss_pred CC-CcHHHHHHHHHHHH
Q psy879 292 GV-NSLLQLSGLLARLC 307 (317)
Q Consensus 292 g~-~~~l~le~~~~~~~ 307 (317)
|. ..++.|...+.-+|
T Consensus 325 g~pe~~~~l~~~~~~la 341 (447)
T 3pvs_A 325 GPAEGERAIAQAIVYLA 341 (447)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 44 66677777777666
No 12
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=100.00 E-value=4.8e-34 Score=252.70 Aligned_cols=278 Identities=12% Similarity=0.155 Sum_probs=228.0
Q ss_pred HHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCCC-ceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeE
Q psy879 22 LKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFKD-AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKI 99 (317)
Q Consensus 22 l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 99 (317)
+.+.++ ++.+| |+||||+|+||++.+..+++.+.+.++.. .++.++. . .++++.+......+.. ++++|
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~~~~~plf---~~~kv 79 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQAMSLF---ASRQT 79 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T---CCHHHHHHHHHHHHHC---CSCEE
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C---CCHHHHHHHhcCcCCc---cCCeE
Confidence 455566 45544 99999999999999999999886543221 2334432 2 2344444444444433 68999
Q ss_pred EEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCC------CcCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcC
Q psy879 100 VILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNS------EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172 (317)
Q Consensus 100 liiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~------~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~ 172 (317)
|+|||++. ++.+.+++|++++|+|++++++|++++.. .++.+++.|||..++|.+++.+++..|+..+++.+|
T Consensus 80 vii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 80 LLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp EEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999998763 468999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh--CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy879 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL 250 (317)
Q Consensus 173 ~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 250 (317)
+.+++++++.++..++||+|.+.+++++++. +.+.|+.++|.+++.......++++++++..++...++.++..+...
T Consensus 160 ~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~~~ 239 (343)
T 1jr3_D 160 LELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLE 239 (343)
T ss_dssp CEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSSTTT
T ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999998765 45689999999988777777899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc---------C----------C---------------ChHHHHHHHHHHHHHHhHHhcCC--C
Q psy879 251 GYAPEDIIGNIFRVAKTL---------D----------I---------------PEPLKLSIIQEIGNVHLRISEGV--N 294 (317)
Q Consensus 251 ~~~~~~i~~~~~~~~~~~---------~----------~---------------~~~~~~~~~~~l~~~~~~l~~g~--~ 294 (317)
|++|..++..+.+.++.+ | . +.....++++.+.++|.++|+|. |
T Consensus 240 g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~~~~~ 319 (343)
T 1jr3_D 240 GSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQS 319 (343)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999988875544322 1 1 11112338889999999999975 7
Q ss_pred cHHHHHHHHHHHHH
Q psy879 295 SLLQLSGLLARLCI 308 (317)
Q Consensus 295 ~~l~le~~~~~~~~ 308 (317)
+++.||.++.++|.
T Consensus 320 ~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 320 VWAELEGLSLLLCH 333 (343)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcC
Confidence 88999999999985
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=100.00 E-value=8.7e-31 Score=217.32 Aligned_cols=216 Identities=46% Similarity=0.825 Sum_probs=188.8
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
++|+|.+|++++|+++.++.+..++..+..++++|+||+|+|||++++.+++.+.+......++.+++....+...+.+.
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHH
Confidence 68999999999999999999999999988878999999999999999999998865555556777887766666666666
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchhHhhhcceeeecCCCHHHHH
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~i~sR~~~i~f~~~~~~~~~ 161 (317)
+..+.... ....+.+.+++|||++.+..+.++.|++++++++.++.+|++++.+..+.+++.+|+..+.|++++.+++.
T Consensus 89 ~~~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 89 IKEFARTA-PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK 167 (226)
T ss_dssp HHHHHTSC-CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHhccc-CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence 65554331 11235788999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcccHHHHHhhcC
Q psy879 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD 218 (317)
Q Consensus 162 ~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i~~~~v~~~~~ 218 (317)
.++...+...+..+++++++.++..++||+|.+++.++.++...+.|+.+++.++++
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 168 KRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHhc
Confidence 999999999899999999999999999999999999998877667899999887654
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.97 E-value=1.3e-28 Score=206.84 Aligned_cols=214 Identities=28% Similarity=0.408 Sum_probs=175.9
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCCC-------------------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK------------------- 61 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~la~~l~~~~~~------------------- 61 (317)
++|+|..|++++|+++.++.+..++..+..++ ++|+||+|+|||++++.+++.+.+....
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 94 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCC
Confidence 68999999999999999999999999888766 9999999999999999999988543211
Q ss_pred CceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCch
Q psy879 62 DAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141 (317)
Q Consensus 62 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~ 141 (317)
..++..+.........++..+..+...+ ..+.+.+++|||++.+..+.++.|++.+++++.++.+|++++....+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAP---ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSC---SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhch---hcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 0123333332233344444433322111 2256789999999999999999999999998889999999999999999
Q ss_pred hHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-CCCcccHHHHHhhcC
Q psy879 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-GFGHVTAEYVFKVCD 218 (317)
Q Consensus 142 ~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-~~~~i~~~~v~~~~~ 218 (317)
++.+|+..++|++++.+++.+++..++..++..+++++++.+++.++|++|.+.+.++.++. +.+.|+.+++.++++
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHHHHHHSC
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999987655 446899999887764
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=5.8e-28 Score=224.28 Aligned_cols=227 Identities=24% Similarity=0.412 Sum_probs=178.2
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhc-----------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCc
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSS-----------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDA 63 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~ 63 (317)
++||+|++|++++|++++++.+..++.. +..++++|+||||+|||++|+++++.+ +..
T Consensus 30 ~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~~ 104 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GYD 104 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TCE
T ss_pred ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CCC
Confidence 4799999999999999999999998875 123469999999999999999999996 356
Q ss_pred eEEecCCCCcChHHHHHHHHHHHhhc-c---c-------CCCCceeEEEEeCCCCCCHHHH---HHHHHHhhhccCCceE
Q psy879 64 VLELNASNDRGIDTVRNKIKMFAQQK-V---T-------LPPGRHKIVILDEADSMTDGAQ---QALRRTMEIYSNTTRF 129 (317)
Q Consensus 64 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~---~-------~~~~~~~vliiDE~d~l~~~~~---~~ll~~le~~~~~~~~ 129 (317)
+++++++.......+...+....... . . ...+.+.||||||+|.+....+ +.|+++++.. ...+
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~i 182 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPL 182 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCE
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCE
Confidence 78888877665544443332211110 0 0 0124678999999999976544 7888888863 4457
Q ss_pred EEEecCCC-cCchhHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhCCCcc
Q psy879 130 ALACNNSE-KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHV 208 (317)
Q Consensus 130 il~~~~~~-~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~~~~i 208 (317)
|++++... ...+++.+||..+.|++|+.+++.+++..++..+++.++++++..+++.++||+|.+++.++.++...+.|
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~I 262 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTI 262 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCC
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCC
Confidence 77777653 55678999999999999999999999999999999999999999999999999999999999888777889
Q ss_pred cHHHHHhhcC---CCCHHHHHHHHHHHhc
Q psy879 209 TAEYVFKVCD---EPHPLAVKEMLLNCVE 234 (317)
Q Consensus 209 ~~~~v~~~~~---~~~~~~i~~l~~~~~~ 234 (317)
+.+++.+++. ......++++++.+..
T Consensus 263 t~~~v~~~~~~~~~~~~~~~f~~~~~il~ 291 (516)
T 1sxj_A 263 NHENINEISKAWEKNIALKPFDIAHKMLD 291 (516)
T ss_dssp CTTHHHHHHHHHHTTTTSHHHHHHHHHTB
T ss_pred chHHHHHHHHhhccCCCCCHHHHHHHHhc
Confidence 9988877654 3344457777777665
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.94 E-value=4.1e-26 Score=203.75 Aligned_cols=214 Identities=16% Similarity=0.233 Sum_probs=161.8
Q ss_pred cccCCCC-CCcccCCHHHHHH---HHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC----
Q psy879 2 EKYRPQT-FSDIVGNEDTVER---LKVFSSSGNVP--NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN---- 71 (317)
Q Consensus 2 ~ky~P~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~---- 71 (317)
++|+|.. |++++|++++++. +...+..+..+ +++|+||||+|||++++++++.+.+. .+++.+++..
T Consensus 35 ~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 35 DALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPFTAIAGSEIFSL 111 (368)
T ss_dssp TTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCEEEEEGGGGSCS
T ss_pred cccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCcccccchhhhhc
Confidence 6799998 9999999998776 56666777765 69999999999999999999998532 1222222111
Q ss_pred C----------------------------------------------cC-----hHHHHHHHHHHHhhccc--CCCCcee
Q psy879 72 D----------------------------------------------RG-----IDTVRNKIKMFAQQKVT--LPPGRHK 98 (317)
Q Consensus 72 ~----------------------------------------------~~-----~~~i~~~~~~~~~~~~~--~~~~~~~ 98 (317)
. .+ ...+++.+..+...... .....+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 0 00 22333333332221100 0001246
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEec------------CCCcCchhHhhhcceeeecCCCHHHHHHHHHH
Q psy879 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN------------NSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 99 vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~------------~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~ 166 (317)
|+||||+|.+..+.++.|++.+++++... ++++++ .+..++++++|||..+.|++|+.+++..++..
T Consensus 192 vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 192 VLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp EEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred eEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 99999999999999999999999877664 444554 35678899999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHhhh-----CCCcccHHHHHhhcCC
Q psy879 167 ICEKENISHTNDGLEAIVFTAQ-GDMRQALNNLQSTHN-----GFGHVTAEYVFKVCDE 219 (317)
Q Consensus 167 ~~~~~~~~i~~~~~~~l~~~~~-gd~r~~i~~l~~~~~-----~~~~i~~~~v~~~~~~ 219 (317)
++..++..+++++++.++..+. ||+|.+++.++.++. +...|+.+++.+++..
T Consensus 271 ~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 271 RCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 999999999987543 5568999988876554
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.94 E-value=1.8e-25 Score=197.35 Aligned_cols=202 Identities=19% Similarity=0.246 Sum_probs=163.9
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSS-----GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI 75 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 75 (317)
.+||+|.+|++++|++.+++.+..++.. +..++++|+||||||||++|+++++.+. ..++.+++......
T Consensus 20 ~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~~~~~ 94 (338)
T 3pfi_A 20 ETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPMIEKS 94 (338)
T ss_dssp ---CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGGCCSH
T ss_pred hhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchhccch
Confidence 3689999999999999999998888764 3445699999999999999999999852 34666666544444
Q ss_pred HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCceEEEEecCCC
Q psy879 76 DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------------NTTRFALACNNSE 137 (317)
Q Consensus 76 ~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------------~~~~~il~~~~~~ 137 (317)
..+...+.. .+.+.+++|||++.+..+.++.|++.+++.. +.+.+|++||...
T Consensus 95 ~~~~~~~~~---------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~ 165 (338)
T 3pfi_A 95 GDLAAILTN---------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG 165 (338)
T ss_dssp HHHHHHHHT---------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG
T ss_pred hHHHHHHHh---------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc
Confidence 444433321 1467899999999999999999999998643 1367899999999
Q ss_pred cCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-----CCCcccHH
Q psy879 138 KIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAE 211 (317)
Q Consensus 138 ~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-----~~~~i~~~ 211 (317)
.+.+++++|| ..+.|++|+.+++..++...+...+..+++++++.++..+.|++|.+.+.++.+.. +...|+.+
T Consensus 166 ~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~ 245 (338)
T 3pfi_A 166 MLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEK 245 (338)
T ss_dssp GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHH
Confidence 9999999999 66999999999999999999999998899999999999999999999999987532 35568888
Q ss_pred HHHhh
Q psy879 212 YVFKV 216 (317)
Q Consensus 212 ~v~~~ 216 (317)
++..+
T Consensus 246 ~~~~~ 250 (338)
T 3pfi_A 246 RANEA 250 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 18
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.94 E-value=2.1e-25 Score=204.13 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=109.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEe---------cC----CCcCchhHhhhcceeeecCCCHHHHHHHH
Q psy879 98 KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALAC---------NN----SEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164 (317)
Q Consensus 98 ~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~---------~~----~~~l~~~i~sR~~~i~f~~~~~~~~~~~l 164 (317)
+|+||||++.|+.+++++|++.||+|+.+ +||++| .. +..++++++|||+.++|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999888 677777 33 66899999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHh---hh--CCCcccHHHHHhhcCCC
Q psy879 165 IEICEKENISHTNDGLEAIVFTA-QGDMRQALNNLQST---HN--GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 165 ~~~~~~~~~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~---~~--~~~~i~~~~v~~~~~~~ 220 (317)
..++..+++.++++++..++..+ .|++|.++++++.+ +. +...|+.++|.++....
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999998 99999999999875 22 56789999998765543
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.93 E-value=1.5e-24 Score=190.25 Aligned_cols=202 Identities=21% Similarity=0.282 Sum_probs=163.0
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS-----GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 76 (317)
+||+|.+|++++|++.+++.+..++.. +...+++|+||||||||++|+++++.+. ..++.+++.......
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~~~~~ 78 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAIEKPG 78 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTCCSHH
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccccCChH
Confidence 689999999999999999888877652 2334699999999999999999999873 345666665444433
Q ss_pred HHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCceEEEEecCCCc
Q psy879 77 TVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------------NTTRFALACNNSEK 138 (317)
Q Consensus 77 ~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------------~~~~~il~~~~~~~ 138 (317)
.+.. .+... .+.+.+++|||++.+....++.|++.+++.. +++.+|++||....
T Consensus 79 ~l~~---~l~~~-----~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 150 (324)
T 1hqc_A 79 DLAA---ILANS-----LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL 150 (324)
T ss_dssp HHHH---HHTTT-----CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS
T ss_pred HHHH---HHHHh-----ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCccc
Confidence 3333 22210 1467799999999999999999999998643 35679999999999
Q ss_pred CchhHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-----CCCcccHHH
Q psy879 139 IIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAEY 212 (317)
Q Consensus 139 l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-----~~~~i~~~~ 212 (317)
+.+++.+|| ..+.|++|+.+++..++...+...+..+++++++.++..++|++|.+.+.++.+.. +...|+.++
T Consensus 151 ~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~ 230 (324)
T 1hqc_A 151 ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRER 230 (324)
T ss_dssp CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHH
T ss_pred CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 999999999 57999999999999999999998899999999999999999999999999987643 234677777
Q ss_pred HHhh
Q psy879 213 VFKV 216 (317)
Q Consensus 213 v~~~ 216 (317)
+..+
T Consensus 231 ~~~~ 234 (324)
T 1hqc_A 231 ALEA 234 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.93 E-value=1.4e-23 Score=188.54 Aligned_cols=279 Identities=16% Similarity=0.157 Sum_probs=194.4
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc----CCC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS----GNV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI 75 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~----~~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 75 (317)
.+|+| ++++|+++.++.+..++.. +.. ++++|+||+|+|||++++.+++.+.+.. +..++.+++......
T Consensus 12 ~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 12 PSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNF 87 (389)
T ss_dssp TTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSH
T ss_pred CccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCH
Confidence 46777 7899999998888777764 332 3799999999999999999999985432 345667776543332
Q ss_pred HHH-HHHHHHHHhhcc----------------cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc----CCceEEEEec
Q psy879 76 DTV-RNKIKMFAQQKV----------------TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS----NTTRFALACN 134 (317)
Q Consensus 76 ~~i-~~~~~~~~~~~~----------------~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~----~~~~~il~~~ 134 (317)
..+ ......+..... ....+.+.+++|||++.+..+.++.|++++++.+ .++.+|++++
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 221 111111100000 0001357799999999999999999999998755 4788899998
Q ss_pred CC---CcCchhHhhhcc--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhc---------CCCHHHHHHHH
Q psy879 135 NS---EKIIEPIQSRCA--MLRYNKLTDAQLLSKVIEICEKE--NISHTNDGLEAIVFTA---------QGDMRQALNNL 198 (317)
Q Consensus 135 ~~---~~l~~~i~sR~~--~i~f~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~---------~gd~r~~i~~l 198 (317)
.+ ..+.+.+.+|+. .+.|+|++.+++..++...+... ...+++++++.++..+ +||+|.+++.+
T Consensus 168 ~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 168 NDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp STHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred CchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 87 578899999998 59999999999999999988752 2368899999999999 89999999999
Q ss_pred HHhhh-----CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcC--CCHHHHHHHHHHHHHhcC
Q psy879 199 QSTHN-----GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY--KLG--YAPEDIIGNIFRVAKTLD 269 (317)
Q Consensus 199 ~~~~~-----~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~--~~~--~~~~~i~~~~~~~~~~~~ 269 (317)
+.++. +...++.+++..+........+...++.+.. +...++..+..+. ..| .+...+...+..+++..+
T Consensus 248 ~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (389)
T 1fnn_A 248 YRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG 326 (389)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcC
Confidence 87654 4567899988776544333334455555432 2334444454444 344 456777777777777766
Q ss_pred CChHHHHHHHHHHHHH
Q psy879 270 IPEPLKLSIIQEIGNV 285 (317)
Q Consensus 270 ~~~~~~~~~~~~l~~~ 285 (317)
..+.....+...+.++
T Consensus 327 ~~~~~~~~~~~~l~~L 342 (389)
T 1fnn_A 327 ERPRVHSQLWSYLNDL 342 (389)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5554444455555443
No 21
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.92 E-value=2.7e-23 Score=182.79 Aligned_cols=204 Identities=17% Similarity=0.293 Sum_probs=158.9
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcCh
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSG-----NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGI 75 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 75 (317)
+++++|++|++++|++++++.+...+..+ .+.+++|+||||+||||+++++++.+.+. +...++......
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-----~~~~sg~~~~~~ 90 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-----IHVTSGPVLVKQ 90 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-----EEEEETTTCCSH
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEechHhcCH
Confidence 36899999999999999999988887653 33569999999999999999999997432 222332222223
Q ss_pred HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCceEEEEecCCC
Q psy879 76 DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS------------------NTTRFALACNNSE 137 (317)
Q Consensus 76 ~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~------------------~~~~~il~~~~~~ 137 (317)
..+...... . ....|++|||++.+.+..++.|+..++... +...++.+++.+.
T Consensus 91 ~~l~~~~~~----~-----~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~ 161 (334)
T 1in4_A 91 GDMAAILTS----L-----ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG 161 (334)
T ss_dssp HHHHHHHHH----C-----CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG
T ss_pred HHHHHHHHH----c-----cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc
Confidence 333322211 1 346799999999999988888888877542 1245667788888
Q ss_pred cCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh-----CCCcccHH
Q psy879 138 KIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN-----GFGHVTAE 211 (317)
Q Consensus 138 ~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~-----~~~~i~~~ 211 (317)
.+.+++++||.. +.|.+++.+++.+++...+...++.++++++..++..++|++|.+++.++.+.. +.+.|+.+
T Consensus 162 ~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~ 241 (334)
T 1in4_A 162 LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTD 241 (334)
T ss_dssp GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 999999999975 899999999999999999988899999999999999999999999999976422 45678888
Q ss_pred HHHhhcC
Q psy879 212 YVFKVCD 218 (317)
Q Consensus 212 ~v~~~~~ 218 (317)
++.++++
T Consensus 242 ~v~~al~ 248 (334)
T 1in4_A 242 IVLKTME 248 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 22
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.92 E-value=7.9e-23 Score=183.35 Aligned_cols=277 Identities=18% Similarity=0.145 Sum_probs=190.5
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHcCC----CCCCceEEecCCCCcC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSS----GNVPNIIISGPPGVGKTTTILCLARILLGP----SFKDAVLELNASNDRG 74 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~la~~l~~~----~~~~~~~~~~~~~~~~ 74 (317)
+|.| ++++|++..++.+..++.. +..++++|+||||+|||++++.+++.+... ..+..++.+++.....
T Consensus 15 ~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 15 DYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp TCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred ccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 4566 7899999999999888743 444569999999999999999999987321 1134566677654332
Q ss_pred hHHHH-------------------HHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--HHHHHHHHhhhc-----cCCce
Q psy879 75 IDTVR-------------------NKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--AQQALRRTMEIY-----SNTTR 128 (317)
Q Consensus 75 ~~~i~-------------------~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--~~~~ll~~le~~-----~~~~~ 128 (317)
...+. +.+..+.... ...+.+.+++|||++.+... .++.|..+++.. +.++.
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL--SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH--TTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH--hccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 22111 1111111110 01245779999999999876 677777777644 55678
Q ss_pred EEEEecCC---CcCchhHhhhc--ceeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHhcC---CCHHHHHHHH
Q psy879 129 FALACNNS---EKIIEPIQSRC--AMLRYNKLTDAQLLSKVIEICEK--ENISHTNDGLEAIVFTAQ---GDMRQALNNL 198 (317)
Q Consensus 129 ~il~~~~~---~~l~~~i~sR~--~~i~f~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~~---gd~r~~i~~l 198 (317)
+|+++|.. ..+.+.+.+|+ ..+.|++++.+++..++...+.. .+..+++++++.++..++ ||+|.+++.+
T Consensus 170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 89999887 67899999999 56999999999999999999876 456788999999999988 9999999999
Q ss_pred HHhhh-----CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcC---CCHHHHHHHHHHHHHhcC
Q psy879 199 QSTHN-----GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHL-YKLG---YAPEDIIGNIFRVAKTLD 269 (317)
Q Consensus 199 ~~~~~-----~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~i~~~~~~~~~~~~ 269 (317)
+.++. +...|+.+++..+....... .+.+.+..-+..+...++.-+ +..| ....+++..+...++..+
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~---~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIERD---RVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG 326 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHHHH---HHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhhc---hHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Confidence 87654 44679999998876554332 233444455555544444333 2123 345677777777777766
Q ss_pred CChHHHHHHHHHHHHHHh
Q psy879 270 IPEPLKLSIIQEIGNVHL 287 (317)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~ 287 (317)
..+.....+...+.++..
T Consensus 327 ~~~~~~~~~~~~l~~L~~ 344 (387)
T 2v1u_A 327 LEHVTLRRVSGIISELDM 344 (387)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 655555555555555443
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.92 E-value=6.8e-24 Score=177.93 Aligned_cols=204 Identities=13% Similarity=0.169 Sum_probs=156.2
Q ss_pred cccCC-CCCCcccC---CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHH
Q psy879 2 EKYRP-QTFSDIVG---NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDT 77 (317)
Q Consensus 2 ~ky~P-~~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 77 (317)
.+|+| .+|+++++ ++++++.+..++..+..++++|+||||+|||++++++++.+.... ..+..+++..... .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~--~~~~~~~~~~~~~--~ 94 (242)
T 3bos_A 19 VHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE--RRSFYIPLGIHAS--I 94 (242)
T ss_dssp CCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEGGGGGG--S
T ss_pred CCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHHHHHH--H
Confidence 46788 78999997 368888899988876666799999999999999999999875442 3344444332111 0
Q ss_pred HHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHH--HHHHHHHhhhccCC--ceEEEEecCCC----cCchhHhhhc--
Q psy879 78 VRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA--QQALRRTMEIYSNT--TRFALACNNSE----KIIEPIQSRC-- 147 (317)
Q Consensus 78 i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~--~~~ll~~le~~~~~--~~~il~~~~~~----~l~~~i~sR~-- 147 (317)
+.+.+. ....+.+++|||++.+.... ++.|+.+++..... ..+|++++... ...+.+.+||
T Consensus 95 ~~~~~~---------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~ 165 (242)
T 3bos_A 95 STALLE---------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW 165 (242)
T ss_dssp CGGGGT---------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHH
T ss_pred HHHHHH---------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhc
Confidence 000010 01356899999999997655 88888888765432 24777777543 4569999999
Q ss_pred -ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhcC
Q psy879 148 -AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVCD 218 (317)
Q Consensus 148 -~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~~ 218 (317)
..+.|++|+.+++.+++...+...++.+++++++.++..++||+|.+.+.++.+.. ..+.|+.+++.+++.
T Consensus 166 ~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 166 GLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp SEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999987543 356799988877653
No 24
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.7e-22 Score=181.21 Aligned_cols=269 Identities=13% Similarity=0.050 Sum_probs=177.8
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHHHHcCC-----CC-CCceEEecCCCC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSS----SGNVPNIIISGPPGVGKTTTILCLARILLGP-----SF-KDAVLELNASND 72 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~----~~~~~~~ll~G~~G~GKt~la~~la~~l~~~-----~~-~~~~~~~~~~~~ 72 (317)
+|+| ++++|+++.++.+..++. .+.+++++|+||||+|||++++.+++.+... .. +..++.+++...
T Consensus 16 ~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 16 LSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp HHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred ccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 5666 789999999888776554 3444569999999999999999999987332 11 445666665432
Q ss_pred c-ChHH-HHHHHHH-------------------HHhhcccCCCCceeEEEEeCCCCCCHHH-HHH-HHHHhhhccCCceE
Q psy879 73 R-GIDT-VRNKIKM-------------------FAQQKVTLPPGRHKIVILDEADSMTDGA-QQA-LRRTMEIYSNTTRF 129 (317)
Q Consensus 73 ~-~~~~-i~~~~~~-------------------~~~~~~~~~~~~~~vliiDE~d~l~~~~-~~~-ll~~le~~~~~~~~ 129 (317)
. .... +...+.. +.... . ....+|+|||+|.+.... ++. +..+++.. .++.+
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l---~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~i 167 (384)
T 2qby_B 93 GGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT---R-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISV 167 (384)
T ss_dssp CSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH---S-SSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh---c-cCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEE
Confidence 2 2111 1111111 11110 0 122399999999987643 555 55555544 67889
Q ss_pred EEEecCC---CcCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHhcC---CCHHHHHHHHHH
Q psy879 130 ALACNNS---EKIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEK--ENISHTNDGLEAIVFTAQ---GDMRQALNNLQS 200 (317)
Q Consensus 130 il~~~~~---~~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~~---gd~r~~i~~l~~ 200 (317)
|++++.. ..+.+++.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.++..++ ||+|.+++.++.
T Consensus 168 I~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 168 IMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp EEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999886 67899999995 67999999999999999998875 446788999999999888 999999999987
Q ss_pred hhh---CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Q psy879 201 THN---GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLS 277 (317)
Q Consensus 201 ~~~---~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 277 (317)
++. +...|+.+++..++....... +.+.+..-+..+. .++..+.. +....++...+..+++.++..+.....
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~~~~---~~~~~~~l~~~~~-~~l~al~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYEQER---LIEAVKALPFHYK-LALRSLIE-SEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHHHHH---HHHHHHSSCHHHH-HHHHHHHT-CCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHhcch---HHHHHHcCCHHHH-HHHHHHHH-hcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 654 346799999988766543322 2233333333332 23333333 333245666666777766655544444
Q ss_pred HHHHHHH
Q psy879 278 IIQEIGN 284 (317)
Q Consensus 278 ~~~~l~~ 284 (317)
++..+..
T Consensus 323 ~~~~l~~ 329 (384)
T 2qby_B 323 FSDIISE 329 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.90 E-value=5.3e-22 Score=178.21 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=145.3
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEec
Q psy879 1 IEKYRPQTFSDIVGNEDTVERLKVFSSS------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68 (317)
Q Consensus 1 ~~ky~P~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~ 68 (317)
+++|+|.+|++++|++.+++.+..++.. ....++||+||||||||++|+++++.+ +..++.++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~ 180 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNIS 180 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEEC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEee
Confidence 3689999999999999999999887721 123469999999999999999999985 34577777
Q ss_pred CCCCcC------hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHHHHHHHHhhhc----cCCc
Q psy879 69 ASNDRG------IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQQALRRTMEIY----SNTT 127 (317)
Q Consensus 69 ~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~~~ll~~le~~----~~~~ 127 (317)
+....+ ...++..+..... ..+.||+|||+|.+. ...++.|+..++.. +..+
T Consensus 181 ~~~l~~~~~g~~~~~~~~~~~~a~~-------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 181 AASLTSKYVGEGEKLVRALFAVARE-------LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp SCCC-------CHHHHHHHHHHHHH-------SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred HHHhhccccchHHHHHHHHHHHHHh-------cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 754322 1223333332221 246799999999883 34566788877743 4567
Q ss_pred eEEEEecCCCcCchhHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy879 128 RFALACNNSEKIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199 (317)
Q Consensus 128 ~~il~~~~~~~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~ 199 (317)
++|++||.++.+.+++.+||. .+.|+.|+.++...++..++...+..++++.+..++..+.|..+..+..|.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888899999999999999997 599999999999999999999888899999999999999998887666654
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.90 E-value=1.8e-21 Score=168.53 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=153.4
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
++|+|.+|++++|++.+++.+..++.. ....+++|+||||||||++++++++.+. ..++.+++
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~ 87 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISA 87 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEES
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeH
Confidence 678899999999999999999887642 1233599999999999999999999862 34566665
Q ss_pred CCCc------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHHHHHHHHhhhcc-----CCc
Q psy879 70 SNDR------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQQALRRTMEIYS-----NTT 127 (317)
Q Consensus 70 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~~~ll~~le~~~-----~~~ 127 (317)
.... ....++..+..... ..+.+++|||+|.+. ...++.|+..++..+ ..+
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARH-------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHH-------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred HHHhhcccchHHHHHHHHHHHHHH-------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 4321 11223333333221 357899999999884 345677888888764 347
Q ss_pred eEEEEecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH-HHHhhh--
Q psy879 128 RFALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNN-LQSTHN-- 203 (317)
Q Consensus 128 ~~il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~-l~~~~~-- 203 (317)
.+|++||.++.+.+++.+||.. +.|+.|+.++...++...+...+..++++.+..++..+.|..+..+.. ++.++.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 7888999999999999999965 899999999999999999988888889999999999999977765543 443321
Q ss_pred ---------------CCCcccHHHHHhhcCCC
Q psy879 204 ---------------GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 204 ---------------~~~~i~~~~v~~~~~~~ 220 (317)
....|+.+++..++...
T Consensus 241 ~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 241 IRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 12356777776665543
No 27
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.89 E-value=6.2e-22 Score=177.39 Aligned_cols=258 Identities=17% Similarity=0.190 Sum_probs=171.0
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-CCceEEecCCCC-----
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSS----GNVPNIIISGPPGVGKTTTILCLARILLGPSF-KDAVLELNASND----- 72 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~----- 72 (317)
+|.| ++++|+++.++.+..++.. +...+++|+||+|+|||++++.+++.+..... +..++.+++...
T Consensus 16 ~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 16 DYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp SCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred ccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHH
Confidence 4555 7899999999999888773 34446999999999999999999998743211 334455543211
Q ss_pred -----------------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC----HHHHHHHHHHhhh-ccCCceEE
Q psy879 73 -----------------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT----DGAQQALRRTMEI-YSNTTRFA 130 (317)
Q Consensus 73 -----------------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~----~~~~~~ll~~le~-~~~~~~~i 130 (317)
.....+.+.+...... .+.+.+++|||++.+. .+....|++.++. ...++.+|
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I 167 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-----YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFI 167 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-----CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEE
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-----cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEE
Confidence 1122222222222211 1347899999999986 4456667776754 34567788
Q ss_pred EEecCC---CcCchhHhhhc--ceeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcC---CCHHHHHHHHHH
Q psy879 131 LACNNS---EKIIEPIQSRC--AMLRYNKLTDAQLLSKVIEICEKE--NISHTNDGLEAIVFTAQ---GDMRQALNNLQS 200 (317)
Q Consensus 131 l~~~~~---~~l~~~i~sR~--~~i~f~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~~---gd~r~~i~~l~~ 200 (317)
++++.. ..+.+.+.+|+ ..+.|++++.+++.+++...+... ...+++++++.++..++ |++|.+++.++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~ 247 (386)
T 2qby_A 168 GITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRV 247 (386)
T ss_dssp EEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 888876 46788999999 579999999999999999987653 35788999999998888 999999999887
Q ss_pred hhh-----CCCcccHHHHHhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCC---HHHHHHHHHHHHHhcC
Q psy879 201 THN-----GFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLY---KLGYA---PEDIIGNIFRVAKTLD 269 (317)
Q Consensus 201 ~~~-----~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~---~~~~~---~~~i~~~~~~~~~~~~ 269 (317)
++. +...|+.+++..+........ +.+.+..-. .....++..+. ..|.. ..+++..+..+++.++
T Consensus 248 a~~~a~~~~~~~i~~~~v~~a~~~~~~~~---~~~~~~~l~-~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 248 SGEIAERMKDTKVKEEYVYMAKEEIERDR---VRDIILTLP-FHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHH---HHHHHHTSC-HHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCccCHHHHHHHHHHHhhch---HHHHHHcCC-HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 553 445899999988765543322 222222222 22222333332 23433 4777777777777666
Q ss_pred CCh
Q psy879 270 IPE 272 (317)
Q Consensus 270 ~~~ 272 (317)
..+
T Consensus 324 ~~~ 326 (386)
T 2qby_A 324 VEA 326 (386)
T ss_dssp CCC
T ss_pred CCC
Confidence 555
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.89 E-value=2.3e-22 Score=175.09 Aligned_cols=182 Identities=19% Similarity=0.264 Sum_probs=142.2
Q ss_pred cccCCHHHHHHHHHHHh---------------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC--CCceEEecCCCCc
Q psy879 11 DIVGNEDTVERLKVFSS---------------SGNVPNIIISGPPGVGKTTTILCLARILLGPSF--KDAVLELNASNDR 73 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~---------------~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~~~~ 73 (317)
+++|++.+++.+...+. .....+++|+||||||||++|+++++.+..... ...++.+++....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 69999999998886654 223346999999999999999999999854322 3356666654321
Q ss_pred ----C--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCC---------CHHHHHHHHHHhhhccCCceEEEEecCCC-
Q psy879 74 ----G--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM---------TDGAQQALRRTMEIYSNTTRFALACNNSE- 137 (317)
Q Consensus 74 ----~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l---------~~~~~~~ll~~le~~~~~~~~il~~~~~~- 137 (317)
+ ...+...+.. ..+.+++|||+|.+ ..+.++.|++.+++.+.++.+|++++...
T Consensus 112 ~~~~g~~~~~~~~~~~~----------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKR----------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM 181 (309)
T ss_dssp CSSTTCHHHHHHHHHHH----------HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH
T ss_pred hhcccccHHHHHHHHHh----------cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH
Confidence 1 1122222221 13469999999977 77889999999999888899999987643
Q ss_pred ----cCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHHhh
Q psy879 138 ----KIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT--------AQGDMRQALNNLQSTH 202 (317)
Q Consensus 138 ----~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------~~gd~r~~i~~l~~~~ 202 (317)
.+.+++++|| ..+.|++|+.+++..++..++...+..++++++..++.. ..||+|.+.+.++.++
T Consensus 182 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 3469999999 679999999999999999999999999999999998875 4589999999998765
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.89 E-value=4.3e-22 Score=181.02 Aligned_cols=211 Identities=14% Similarity=0.191 Sum_probs=156.3
Q ss_pred cCCC-CCCccc-C--CHHHHHHHHHHHhcCC-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 4 YRPQ-TFSDIV-G--NEDTVERLKVFSSSGN-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 4 y~P~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
..|+ +|++++ | +......+........ +++++||||||+|||++++++++.+.....+..++.+++... ...+
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~ 175 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDL 175 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHH
Confidence 3454 699988 5 4455556666666543 556999999999999999999998854333445566554321 1111
Q ss_pred HHHHH-----HHHhhcccCCCC-ceeEEEEeCCCCCCH--HHHHHHHHHhhhcc-CCceEEEEecCC-C---cCchhHhh
Q psy879 79 RNKIK-----MFAQQKVTLPPG-RHKIVILDEADSMTD--GAQQALRRTMEIYS-NTTRFALACNNS-E---KIIEPIQS 145 (317)
Q Consensus 79 ~~~~~-----~~~~~~~~~~~~-~~~vliiDE~d~l~~--~~~~~ll~~le~~~-~~~~~il~~~~~-~---~l~~~i~s 145 (317)
.+.+. .+.... . .+.+++|||++.+.. ..++.|+..++... ....+|++|+.+ . .+.+++.|
T Consensus 176 ~~~~~~~~~~~~~~~~-----~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s 250 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKY-----RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_dssp HHHHHTTCHHHHHHHH-----TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH
T ss_pred HHHHHcccHHHHHHHh-----cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh
Confidence 11111 111111 2 577999999999986 68889999988643 345677777764 3 37899999
Q ss_pred hc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhh----CCCcccHHHHHhhcC
Q psy879 146 RC---AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN----GFGHVTAEYVFKVCD 218 (317)
Q Consensus 146 R~---~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~----~~~~i~~~~v~~~~~ 218 (317)
|| ..+.|++|+.+++..++...+...++.+++++++.++..++||+|.+.+.++.+.. ....|+.+++.+++.
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~ 330 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLK 330 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTS
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99 57999999999999999999999999999999999999999999999999987543 345799999998877
Q ss_pred CCC
Q psy879 219 EPH 221 (317)
Q Consensus 219 ~~~ 221 (317)
...
T Consensus 331 ~~~ 333 (440)
T 2z4s_A 331 DFI 333 (440)
T ss_dssp TTT
T ss_pred HHh
Confidence 543
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.88 E-value=1.8e-21 Score=170.43 Aligned_cols=187 Identities=17% Similarity=0.156 Sum_probs=141.6
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHh----------c-CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSS----------S-GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
+++.+.+|++++|++.+++.|..++. . +.+ .++|||||||||||++|+++++.+. ..++.+++
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~~ 84 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSS 84 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEEH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEch
Confidence 46788899999999999999988872 2 222 3499999999999999999999863 34566654
Q ss_pred CCC----cC--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhh---ccCCceE
Q psy879 70 SND----RG--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEI---YSNTTRF 129 (317)
Q Consensus 70 ~~~----~~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~---~~~~~~~ 129 (317)
... .+ ...++..+..... ..+.||+|||+|.+.. ..++.|+..++. ....+++
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARE-------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHH-------TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred HHHhhcccchHHHHHHHHHHHHHh-------cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 321 11 1223333333221 3568999999998854 346788888874 3456778
Q ss_pred EEEecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy879 130 ALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQS 200 (317)
Q Consensus 130 il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~ 200 (317)
|++||.+..+++++++||.. +.|+.|+.++...++...+...+..+++..+..++..+.| +.+.+.++++.
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 88999999999999999965 9999999999999999999888878889999999999877 45555555544
No 31
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-21 Score=168.57 Aligned_cols=189 Identities=11% Similarity=0.102 Sum_probs=133.1
Q ss_pred ccCCHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCCCcChHHHH-H-
Q psy879 12 IVGNEDTVER----LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASNDRGIDTVR-N- 80 (317)
Q Consensus 12 ~~g~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~~~~~~~i~-~- 80 (317)
+.|+++..+. |...+..+.+++++|+||||||||++++.+++.+.... ....++++||....+...+. .
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 4455555554 55666778888899999999999999999999985321 13456788876533322111 1
Q ss_pred ----------------HHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh---ccCCceEEEEecCCC----
Q psy879 81 ----------------KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI---YSNTTRFALACNNSE---- 137 (317)
Q Consensus 81 ----------------~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~---~~~~~~~il~~~~~~---- 137 (317)
.+..+.... ....+...|+++||+|.+. .++.|+.+++. ......+|+++|..+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~-~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNV-PKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHS-CGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHh-hhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 111111110 0012457899999999998 56777777663 334567888888764
Q ss_pred cCchhHhhhcc--eeeecCCCHHHHHHHHHHHHHHcCC-----------------------------------CCCHHHH
Q psy879 138 KIIEPIQSRCA--MLRYNKLTDAQLLSKVIEICEKENI-----------------------------------SHTNDGL 180 (317)
Q Consensus 138 ~l~~~i~sR~~--~i~f~~~~~~~~~~~l~~~~~~~~~-----------------------------------~i~~~~~ 180 (317)
.+.++++||+. .+.|+||+.+|+.+++..++....- .++++++
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai 258 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKIT 258 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHH
Confidence 35677899985 5999999999999999999876321 3689999
Q ss_pred HHHHH---hcCCCHHHHHHHHHHhhh
Q psy879 181 EAIVF---TAQGDMRQALNNLQSTHN 203 (317)
Q Consensus 181 ~~l~~---~~~gd~r~~i~~l~~~~~ 203 (317)
+.+++ ..+||+|+|++.|+.++.
T Consensus 259 ~~~A~~vA~~~GD~R~Al~ilr~A~~ 284 (318)
T 3te6_A 259 QLIAKNVANVSGSTEKAFKICEAAVE 284 (318)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 99988 578999999999988654
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=6.2e-21 Score=169.14 Aligned_cols=187 Identities=20% Similarity=0.235 Sum_probs=142.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
++|+|.+|++++|++.+++.|...+.. ....+++|+||||||||++|+++++.+ +..++.+++
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i~~ 150 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSISA 150 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEEEG
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEEeh
Confidence 678999999999999999999887742 233459999999999999999999986 334666665
Q ss_pred CCCcC------hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhh----ccCCce
Q psy879 70 SNDRG------IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEI----YSNTTR 128 (317)
Q Consensus 70 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~----~~~~~~ 128 (317)
..... ...++..+..... ..+.+|+|||+|.+.. ..++.|+..++. .+..+.
T Consensus 151 ~~l~~~~~g~~~~~~~~~~~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 151 SSLTSKWVGEGEKMVRALFAVARC-------QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp GGGCCSSTTHHHHHHHHHHHHHHH-------TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred HHhhccccchHHHHHHHHHHHHHh-------cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 43211 1222333322211 3578999999998742 346677777774 245677
Q ss_pred EEEEecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy879 129 FALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQS 200 (317)
Q Consensus 129 ~il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~ 200 (317)
+|++||.+..+.+++++||.. +.++.|+.++...++...+...+..++++.++.++..+.| +.+.+..+++.
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 888999999999999999984 8999999999999999999888888999999999999988 44444444444
No 33
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.88 E-value=4.1e-21 Score=170.06 Aligned_cols=187 Identities=17% Similarity=0.148 Sum_probs=137.0
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSS-----------SGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~-----------~~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
.++.+.+|++++|++.+++.|..++. .+.++ ++|||||||||||++|+++++.+. ..++.+++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v~~ 117 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSS 117 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEEEH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEeeH
Confidence 46778899999999999999988763 12233 499999999999999999999973 33555554
Q ss_pred CCC------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------HHHHHHHHhhh---ccCCceE
Q psy879 70 SND------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------AQQALRRTMEI---YSNTTRF 129 (317)
Q Consensus 70 ~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~~~~ll~~le~---~~~~~~~ 129 (317)
... .....++..+..... ..+.||||||+|.+... .++.|+..++. .+..+++
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~-------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARE-------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHH-------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred HHHhhhhcchHHHHHHHHHHHHHH-------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 321 112223333333221 35789999999998742 46778888874 3456788
Q ss_pred EEEecCCCcCchhHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy879 130 ALACNNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQS 200 (317)
Q Consensus 130 il~~~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~ 200 (317)
|++||.++.+++++++||.. +.+++|+.++...++..++...+..+++..++.++..+.| +.+.+.++++.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 88999999999999999955 9999999999999999999887777889999999999988 45555555544
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.87 E-value=3.9e-21 Score=167.26 Aligned_cols=204 Identities=21% Similarity=0.292 Sum_probs=145.2
Q ss_pred CcccCCHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC-
Q psy879 10 SDIVGNEDTVERLKVFSSS--------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG- 74 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~- 74 (317)
++++|++++++.+..++.. ..+.+++|+||||||||++++++++.+. ..++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccC
Confidence 3589999999998877754 2344699999999999999999999973 2355555432211
Q ss_pred -------hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHH------------HHHHHHHhhhc----------cC
Q psy879 75 -------IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA------------QQALRRTMEIY----------SN 125 (317)
Q Consensus 75 -------~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~------------~~~ll~~le~~----------~~ 125 (317)
...+.+.+.... .... ....+.|++|||+|.+..+. ++.|++++++. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~ 167 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAG-GAID-AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 167 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTT-TCHH-HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECT
T ss_pred CccCccHHHHHHHHHHHhh-HHHh-hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCC
Confidence 112232222110 0000 00236799999999997654 88999999963 34
Q ss_pred CceEEEEe----cCCCcCchhHhhhcce-eeecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHhc
Q psy879 126 TTRFALAC----NNSEKIIEPIQSRCAM-LRYNKLTDAQLLSKVIE-----------ICEKEN--ISHTNDGLEAIVFTA 187 (317)
Q Consensus 126 ~~~~il~~----~~~~~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~~ 187 (317)
++.+|+++ +.+..+.+++.+||.. +.|++|+.+++..++.. .+...+ +.+++++++.++..+
T Consensus 168 ~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 247 (310)
T 1ofh_A 168 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 247 (310)
T ss_dssp TCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHH
T ss_pred cEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHh
Confidence 66777774 3556889999999975 99999999999999883 233345 368999999999887
Q ss_pred --------CCCHHHHHHHHHHhhh--------CCC---cccHHHHHhhcCCC
Q psy879 188 --------QGDMRQALNNLQSTHN--------GFG---HVTAEYVFKVCDEP 220 (317)
Q Consensus 188 --------~gd~r~~i~~l~~~~~--------~~~---~i~~~~v~~~~~~~ 220 (317)
.||+|.+.+.++.+.. ..+ .|+.+++..++...
T Consensus 248 ~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 248 FRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred hhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 7999999999987541 111 48888888877653
No 35
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-20 Score=166.77 Aligned_cols=198 Identities=19% Similarity=0.226 Sum_probs=137.6
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 73 (317)
-+|+|+.|.+++++.|+..+.- | .+| .+|||||||||||++|+++|.++ +..++.++++...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhh
Confidence 4699999999999998877531 3 233 39999999999999999999997 3446666654321
Q ss_pred ------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhh--ccCCceEEE
Q psy879 74 ------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEI--YSNTTRFAL 131 (317)
Q Consensus 74 ------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~--~~~~~~~il 131 (317)
+...++..+..... ..+.||+|||+|.+... ..+.|+..|+. ...++.+|+
T Consensus 220 sk~vGese~~vr~lF~~Ar~-------~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIa 292 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMARE-------HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM 292 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHH-------TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEE
T ss_pred ccccchHHHHHHHHHHHHHH-------hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEe
Confidence 22345555544433 35789999999988431 24566677764 345677899
Q ss_pred EecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHhh--
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQSTH-- 202 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~~-- 202 (317)
+||.++.+++++.+ |+.. |+|+.|+.++..++++..+++..+. ++..++.++..+.| |+..+.+..-..+
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999987 7765 9999999999999998887654432 12237788887765 4444433322111
Q ss_pred hCCCcccHHHHHhhc
Q psy879 203 NGFGHVTAEYVFKVC 217 (317)
Q Consensus 203 ~~~~~i~~~~v~~~~ 217 (317)
.+...|+.+|+..++
T Consensus 372 ~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 372 ERRIHVTQEDFELAV 386 (405)
T ss_dssp TTCSBCCHHHHHHHH
T ss_pred cCCCCcCHHHHHHHH
Confidence 244567777765543
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.4e-20 Score=161.29 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=139.7
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHh----------c-CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSS----------S-GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 70 (317)
++.+.+|+++.|++++++.|...+. . ..+ .++|||||||||||++|+++++.+. ...++.+++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 4566789999999999999987763 1 122 3499999999999999999999862 2345555554
Q ss_pred CC------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhh---ccCCceEE
Q psy879 71 ND------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEI---YSNTTRFA 130 (317)
Q Consensus 71 ~~------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~---~~~~~~~i 130 (317)
.. .....++..+..... ..+.||+|||+|.+.. ...+.|+..++. ....+.+|
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARE-------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHH-------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHh-------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 31 122334444443322 3578999999998832 346777888775 34667788
Q ss_pred EEecCCCcCchhHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Q psy879 131 LACNNSEKIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGD-MRQALNNLQS 200 (317)
Q Consensus 131 l~~~~~~~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd-~r~~i~~l~~ 200 (317)
++||.++.+++++++||. .+.++.|+.++...++...+...+..+++..++.++..+.|- .+.+-.+++.
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999999999995 499999999999999999988777778899999999998774 4444444444
No 37
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.86 E-value=1.6e-20 Score=171.04 Aligned_cols=189 Identities=16% Similarity=0.135 Sum_probs=141.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHh----------c-CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSS----------S-GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
.++.|.+|++++|++.+++.|...+. . ..+ .++||+||||||||++|+++++.+. ...++.+++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~ 201 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISS 201 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECC
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeH
Confidence 35778889999999999999988762 1 122 3599999999999999999999862 234566665
Q ss_pred CCCcC------hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHHHHHHHHhhh---ccCCceE
Q psy879 70 SNDRG------IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQQALRRTMEI---YSNTTRF 129 (317)
Q Consensus 70 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~~~ll~~le~---~~~~~~~ 129 (317)
....+ ...++..+..... ..+.||+|||+|.+. ...++.|+..++. .+..+.+
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARE-------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp C---------CCCTHHHHHHHHHH-------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHHHhhhcchHHHHHHHHHHHHHH-------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 43211 1223333333221 357899999999983 2456778887775 3567889
Q ss_pred EEEecCCCcCchhHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHh
Q psy879 130 ALACNNSEKIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQST 201 (317)
Q Consensus 130 il~~~~~~~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~~ 201 (317)
|++||.+..+++++++||. .+.++.|+.++...++...+...+..+++..++.++..+.| +.+.+.++++.+
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999996 59999999999999999998877777789999999999988 455555555443
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.85 E-value=8.4e-21 Score=166.35 Aligned_cols=187 Identities=14% Similarity=0.163 Sum_probs=138.0
Q ss_pred CCCCccc-C--CHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 7 QTFSDIV-G--NEDTVERLKVFSSSG--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 7 ~~~~~~~-g--~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
.+|++++ | +......+..++..+ ..++++|+||||+|||++++++++.+... +..++.+++... ...+...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~ 83 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEH 83 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHH
Confidence 4699998 4 555666677777664 34569999999999999999999987533 344566654321 1111111
Q ss_pred HH-----HHHhhcccCCCCceeEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCceEEEEecCC-C---cCchhHhhhc--
Q psy879 82 IK-----MFAQQKVTLPPGRHKIVILDEADSMTD--GAQQALRRTMEIY-SNTTRFALACNNS-E---KIIEPIQSRC-- 147 (317)
Q Consensus 82 ~~-----~~~~~~~~~~~~~~~vliiDE~d~l~~--~~~~~ll~~le~~-~~~~~~il~~~~~-~---~l~~~i~sR~-- 147 (317)
+. .+.... ..+.+++|||++.+.. ..++.++..++.. .....+|++++.+ . .+.+++.+|+
T Consensus 84 ~~~~~~~~~~~~~-----~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~ 158 (324)
T 1l8q_A 84 LKKGTINEFRNMY-----KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG 158 (324)
T ss_dssp HHHTCHHHHHHHH-----HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT
T ss_pred HHcCcHHHHHHHh-----cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC
Confidence 11 111110 2367999999999976 6788888888753 3345667766654 2 5889999999
Q ss_pred -ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHhhhC
Q psy879 148 -AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG 204 (317)
Q Consensus 148 -~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~~l~~~~~~ 204 (317)
..+.|+| +.++...++...+...++.+++++++.++..+ ||+|.+.+.++.++..
T Consensus 159 ~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 159 GILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp SEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 6699999 99999999999999999999999999999999 9999999999876543
No 39
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.85 E-value=3.8e-21 Score=169.08 Aligned_cols=204 Identities=18% Similarity=0.179 Sum_probs=147.2
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
++|+|..+++++|++++++.+...+..+. +++|+||||||||++++++++.+.. .+..+++........+
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~-----~~~~i~~~~~~~~~~l--- 88 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDL-----DFHRIQFTPDLLPSDL--- 88 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTCCHHHH---
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEecCCCCChhhc---
Confidence 57899999999999999999988888776 8999999999999999999998632 3444544322222221
Q ss_pred HHHHHh----hc--ccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCCC-----cC
Q psy879 82 IKMFAQ----QK--VTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNSE-----KI 139 (317)
Q Consensus 82 ~~~~~~----~~--~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~~-----~l 139 (317)
++.... .. .....-...+++|||++.+.++.++.|++.+++. +....+|.++|+.. .+
T Consensus 89 ~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l 168 (331)
T 2r44_A 89 IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPL 168 (331)
T ss_dssp HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCC
T ss_pred CCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccC
Confidence 110000 00 0000001369999999999999999999999963 44555666666432 38
Q ss_pred chhHhhhcce-eeecCCCHHHHHHHHHHHHHH----------------------cCCCCCHHHHHHHHHhc---------
Q psy879 140 IEPIQSRCAM-LRYNKLTDAQLLSKVIEICEK----------------------ENISHTNDGLEAIVFTA--------- 187 (317)
Q Consensus 140 ~~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~----------------------~~~~i~~~~~~~l~~~~--------- 187 (317)
.+++.+||.. +.+++|+.++..+++...+.. .++.++++++++++..+
T Consensus 169 ~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~ 248 (331)
T 2r44_A 169 PEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEY 248 (331)
T ss_dssp CHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGG
T ss_pred CHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 8999999986 999999999999999887654 26778899888887643
Q ss_pred -----------CCCHHHHHHHHHHhhh-----CCCcccHHHHHh
Q psy879 188 -----------QGDMRQALNNLQSTHN-----GFGHVTAEYVFK 215 (317)
Q Consensus 188 -----------~gd~r~~i~~l~~~~~-----~~~~i~~~~v~~ 215 (317)
+.++|.+++.++.+.. +...++.+++.+
T Consensus 249 ~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~ 292 (331)
T 2r44_A 249 GLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKE 292 (331)
T ss_dssp TCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHH
T ss_pred cccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 2279999888875322 445688877754
No 40
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.85 E-value=1.2e-19 Score=153.87 Aligned_cols=202 Identities=16% Similarity=0.157 Sum_probs=143.8
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhc-----------CC-CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSS-----------GN-VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
++++|.+|++++|++++++.+...+.. .. +.+++|+||||||||++++++++.+. .+++.+++
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~ 78 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISG 78 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECS
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeH
Confidence 578899999999999999887665431 12 23599999999999999999999873 23566665
Q ss_pred CCCc------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhhc--cCCc
Q psy879 70 SNDR------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEIY--SNTT 127 (317)
Q Consensus 70 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~~--~~~~ 127 (317)
.... ....++..+..... ..+.++++||+|.+.. ...+.++..++.. ....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~a~~-------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 79 SDFVEMFVGVGASRVRDMFEQAKK-------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp CSSTTSCCCCCHHHHHHHHHHHHT-------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHH-------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 4321 22333333333211 3467999999987642 3456677777643 4457
Q ss_pred eEEEEecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHhh
Q psy879 128 RFALACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTND-GLEAIVFTAQG-DMRQALNNLQSTH 202 (317)
Q Consensus 128 ~~il~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g-d~r~~i~~l~~~~ 202 (317)
.+|++||.++.+.+++.+ |+.. +.|++|+.++..+++...+.... ++++ ....++..+.| +.|++.+.++.++
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVNEAA 229 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788899999999999987 7755 89999999999999988776543 3333 36778888999 8998888887644
Q ss_pred h-----CCCcccHHHHHhhc
Q psy879 203 N-----GFGHVTAEYVFKVC 217 (317)
Q Consensus 203 ~-----~~~~i~~~~v~~~~ 217 (317)
. +...|+.+++..++
T Consensus 230 ~~a~~~~~~~i~~~~~~~a~ 249 (257)
T 1lv7_A 230 LFAARGNKRVVSMVEFEKAK 249 (257)
T ss_dssp HHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHH
Confidence 3 34678888776543
No 41
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.7e-20 Score=166.72 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=137.3
Q ss_pred CCCCCcccCCHHHHHHHHHHHh-----------cC-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC
Q psy879 6 PQTFSDIVGNEDTVERLKVFSS-----------SG-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND 72 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 72 (317)
+.+|+|+.|.+++++.|...+. -| .+| .+|||||||||||++|+++|.++ +..++.++++..
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhhh
Confidence 3579999999999999877642 12 233 49999999999999999999997 334666665432
Q ss_pred ----c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------H---HHHHHHHHhhhcc--CCceEE
Q psy879 73 ----R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------G---AQQALRRTMEIYS--NTTRFA 130 (317)
Q Consensus 73 ----~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~---~~~~ll~~le~~~--~~~~~i 130 (317)
. +...++..+...... .+.||+|||+|.+.. . ..+.|+..|+... .++.+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~-------aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEK-------APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHH-------CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred hhcccchHHHHHHHHHHHHHhc-------CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 1 123344444443332 478999999997621 1 2445677776543 456788
Q ss_pred EEecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHh--
Q psy879 131 LACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQST-- 201 (317)
Q Consensus 131 l~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~-- 201 (317)
++||.++.+++++.+ |+.. |+|+.|+.++..++++..+++..+. ++-.++.++..+.| |++.+.+..-..
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999987 7766 9999999999999999888765432 12236778887755 444444332211
Q ss_pred hhCCCcccHHHHHhhcC
Q psy879 202 HNGFGHVTAEYVFKVCD 218 (317)
Q Consensus 202 ~~~~~~i~~~~v~~~~~ 218 (317)
..+...|+.+|+..++.
T Consensus 404 r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 404 RNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp HHTCSSBCHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHH
Confidence 12556788887766544
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=6.5e-20 Score=157.75 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=139.2
Q ss_pred cCCCCCCcccCCHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC
Q psy879 4 YRPQTFSDIVGNEDTVERLKVFSSS-------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70 (317)
Q Consensus 4 y~P~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 70 (317)
..+.+|++++|++.+++.+..++.. ....+++|+||||||||++++++++.+. ..++.+++.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~ 85 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVGS 85 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehH
Confidence 3445799999999999998887643 2334599999999999999999999862 335555543
Q ss_pred CCc----C--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCC-----------CHHHHHHHHHHhhh-----ccCCce
Q psy879 71 NDR----G--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM-----------TDGAQQALRRTMEI-----YSNTTR 128 (317)
Q Consensus 71 ~~~----~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l-----------~~~~~~~ll~~le~-----~~~~~~ 128 (317)
... + ...+...+..... ..+.|++|||+|.+ ....+..+..+++. ....+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKE-------KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHH-------TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred HHHHhccchHHHHHHHHHHHHHH-------cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 211 1 1222333332221 34679999999987 44556666666653 335678
Q ss_pred EEEEecCCCcCchhHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHh---
Q psy879 129 FALACNNSEKIIEPIQS--RCA-MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQST--- 201 (317)
Q Consensus 129 ~il~~~~~~~l~~~i~s--R~~-~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~~--- 201 (317)
+|++||.+..+.+++.+ |+. .+.|++|+.++..+++...+...+.. ++..+..++..+.| +.+.+..+++.+
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMN 237 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 89999999999999998 886 49999999999999999988765543 23346777777766 444444444432
Q ss_pred hh--CCCcccHHHHHhhc
Q psy879 202 HN--GFGHVTAEYVFKVC 217 (317)
Q Consensus 202 ~~--~~~~i~~~~v~~~~ 217 (317)
+. +...|+.+++.+++
T Consensus 238 a~~~~~~~I~~~d~~~al 255 (285)
T 3h4m_A 238 AIRELRDYVTMDDFRKAV 255 (285)
T ss_dssp HHHTTCSSBCHHHHHHHH
T ss_pred HHHhccCcCCHHHHHHHH
Confidence 22 45568888876543
No 43
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-19 Score=162.48 Aligned_cols=197 Identities=20% Similarity=0.256 Sum_probs=135.2
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 73 (317)
-+|+|+.|.+++++.|...+.- | .+| .+|||||||||||++|+++|.++. ..++.++++...
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehhhhc
Confidence 3599999999999988776531 2 233 399999999999999999999973 346666654321
Q ss_pred ----C--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhhc--cCCceEEE
Q psy879 74 ----G--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEIY--SNTTRFAL 131 (317)
Q Consensus 74 ----~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~~--~~~~~~il 131 (317)
+ ...++..+..... ..+.||+|||+|.+.. ...+.|+..|+.. ..++.+|+
T Consensus 253 sk~~Gese~~ir~~F~~A~~-------~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ 325 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKE-------HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHH-------SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEE
T ss_pred cccchHHHHHHHHHHHHHHh-------cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 1 2234444433322 3578999999998742 1245677777744 34578999
Q ss_pred EecCCCcCchhHhhhc--ce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHh--h
Q psy879 132 ACNNSEKIIEPIQSRC--AM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQST--H 202 (317)
Q Consensus 132 ~~~~~~~l~~~i~sR~--~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~--~ 202 (317)
+||.++.+++++++++ .. |+|+.|+.++...+++..+++.... ++..++.++..+.| |++.+.+..-.. .
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998774 43 9999999999999998887754332 22336788888765 444444332211 1
Q ss_pred hCCCcccHHHHHhh
Q psy879 203 NGFGHVTAEYVFKV 216 (317)
Q Consensus 203 ~~~~~i~~~~v~~~ 216 (317)
.+...|+.+++..+
T Consensus 405 ~~~~~i~~~d~~~A 418 (437)
T 4b4t_L 405 DDRDHINPDDLMKA 418 (437)
T ss_dssp TTCSSBCHHHHHHH
T ss_pred cCCCCCCHHHHHHH
Confidence 24556777776543
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.85 E-value=2.7e-19 Score=151.95 Aligned_cols=197 Identities=16% Similarity=0.118 Sum_probs=129.5
Q ss_pred CCCCCcccCCHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSS------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 73 (317)
+.+|++++|++++++.+...+.. ....+++|+||||||||++++++++.+. ..++.+++....
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTTTS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHHHH
Confidence 35799999999999988776531 2233599999999999999999999873 335656554321
Q ss_pred C------hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH------------HHHHH---HHHHhhh--ccCCceEE
Q psy879 74 G------IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD------------GAQQA---LRRTMEI--YSNTTRFA 130 (317)
Q Consensus 74 ~------~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~------------~~~~~---ll~~le~--~~~~~~~i 130 (317)
. ...++..+..... ..+.+|+|||+|.+.. ..+.. |+..++. .+..+.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~-------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARA-------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHH-------TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hhccChhHHHHHHHHHHHHh-------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 1 1223333332221 2468999999999832 22333 4444443 23467788
Q ss_pred EEecCCCcCchhHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCC-HHHHHHHHHHhhh--
Q psy879 131 LACNNSEKIIEPIQS--RCA-MLRYNKLTDAQLLSKVIEICEKENISHTNDG-LEAIVFTAQGD-MRQALNNLQSTHN-- 203 (317)
Q Consensus 131 l~~~~~~~l~~~i~s--R~~-~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~gd-~r~~i~~l~~~~~-- 203 (317)
+++|.+..+++++.+ |+. .+.|++|+.++...++...+...+...+.+. ...++..+.|. .+.+.+.++.++.
T Consensus 150 ~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 150 ASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHA 229 (262)
T ss_dssp EEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-
T ss_pred ecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999998 985 4999999999999999999988887776654 46788887764 4455555555433
Q ss_pred ---CCCcccHHHHH
Q psy879 204 ---GFGHVTAEYVF 214 (317)
Q Consensus 204 ---~~~~i~~~~v~ 214 (317)
+...|+.+++.
T Consensus 230 ~~~~~~~i~~~d~~ 243 (262)
T 2qz4_A 230 AREGHTSVHTLNFE 243 (262)
T ss_dssp -------CCBCCHH
T ss_pred HHcCCCCCCHHHHH
Confidence 22345555443
No 45
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.7e-19 Score=159.87 Aligned_cols=198 Identities=19% Similarity=0.249 Sum_probs=136.2
Q ss_pred CC-CCCCcccCCHHHHHHHHHHHh-----------cC-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC
Q psy879 5 RP-QTFSDIVGNEDTVERLKVFSS-----------SG-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70 (317)
Q Consensus 5 ~P-~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 70 (317)
+| -+|+|+.|.+++++.|+..+. -| .+| .+|||||||||||++|+++|+++. ..++.++++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s 277 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGS 277 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGG
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhH
Confidence 45 469999999999999887653 13 333 499999999999999999999973 346666654
Q ss_pred CC----c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------H---HHHHHHHHhhhc--cCCce
Q psy879 71 ND----R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------G---AQQALRRTMEIY--SNTTR 128 (317)
Q Consensus 71 ~~----~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~---~~~~ll~~le~~--~~~~~ 128 (317)
.. . +...++..+..... ..+.||+|||+|.+.. . ..+.|+..|+.. ...+.
T Consensus 278 ~L~sk~vGesek~ir~lF~~Ar~-------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 278 ELVQKYVGEGARMVRELFEMART-------KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp GGCCCSSSHHHHHHHHHHHHHHH-------TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred HhhcccCCHHHHHHHHHHHHHHh-------cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 32 1 12334454444332 3578999999998742 1 234555556533 34567
Q ss_pred EEEEecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhcCC----CHHHHHHHHHH
Q psy879 129 FALACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTN-DGLEAIVFTAQG----DMRQALNNLQS 200 (317)
Q Consensus 129 ~il~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g----d~r~~i~~l~~ 200 (317)
+|++||.++.+++++.+ |+.. |+|+.|+.++..++++.++++..+ ++ -.++.++..+.| |++.+.+..-.
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvdl~~LA~~T~GfSGADI~~l~~eAa~ 428 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRSVCTEAGM 428 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 88999999999999987 8876 999999999999999888765433 22 236778887765 45444433221
Q ss_pred h--hhCCCcccHHHHHhh
Q psy879 201 T--HNGFGHVTAEYVFKV 216 (317)
Q Consensus 201 ~--~~~~~~i~~~~v~~~ 216 (317)
. ..+...++.+++..+
T Consensus 429 ~Air~~~~~it~~Df~~A 446 (467)
T 4b4t_H 429 FAIRARRKVATEKDFLKA 446 (467)
T ss_dssp HHHHHTCSSBCHHHHHHH
T ss_pred HHHHcCCCccCHHHHHHH
Confidence 1 125566777776543
No 46
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2e-19 Score=159.18 Aligned_cols=197 Identities=22% Similarity=0.260 Sum_probs=135.6
Q ss_pred CCCCcccCCHHHHHHHHHHHh-----------cC-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-
Q psy879 7 QTFSDIVGNEDTVERLKVFSS-----------SG-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~- 72 (317)
.+|+|+.|.+++++.|...+. -| .+| .+|||||||||||++|+++|.++ +..++.++.+..
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-----SATFLRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEEEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-----CCCEEEEEHHHhh
Confidence 479999999999999887653 12 233 49999999999999999999997 344666665432
Q ss_pred ---cC--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------H---HHHHHHHHhhhc--cCCceEEE
Q psy879 73 ---RG--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------G---AQQALRRTMEIY--SNTTRFAL 131 (317)
Q Consensus 73 ---~~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~---~~~~ll~~le~~--~~~~~~il 131 (317)
.+ ...++..+..... ..+.||+|||+|.+.. . ..+.|+..++.. ..++.+|+
T Consensus 254 sk~vGesek~ir~lF~~Ar~-------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIa 326 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGE-------NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIM 326 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHH-------TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEE
T ss_pred hccCchHHHHHHHHHHHHHh-------cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEE
Confidence 11 2334444444332 3578999999998742 1 244556666533 35678899
Q ss_pred EecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHhh-
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTND-GLEAIVFTAQG----DMRQALNNLQSTH- 202 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g----d~r~~i~~l~~~~- 202 (317)
+||.++.+++++.+ |+.. |+|+.|+.++..+++..++++.. ++++ .++.++..+.| |+..+.+..-..+
T Consensus 327 ATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred eCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987 7765 99999999999999988876543 3332 36778877654 4444443322211
Q ss_pred -hCCCcccHHHHHhhc
Q psy879 203 -NGFGHVTAEYVFKVC 217 (317)
Q Consensus 203 -~~~~~i~~~~v~~~~ 217 (317)
.+...|+.+|+..++
T Consensus 405 r~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAK 420 (437)
T ss_dssp HTTCSCBCHHHHHHHH
T ss_pred HcCCCccCHHHHHHHH
Confidence 244567777765543
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.83 E-value=7.3e-20 Score=162.01 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=140.5
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC------CCCCC----------------
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG------PSFKD---------------- 62 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~------~~~~~---------------- 62 (317)
+|.+|++++|++++++.+......+...+++|+||||||||++|+++++.+.. ...+.
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 56789999999998887766655444457999999999999999999998642 01100
Q ss_pred ------ceEEecCCCCcChHHH------HHHHHHHHhh--cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----
Q psy879 63 ------AVLELNASNDRGIDTV------RNKIKMFAQQ--KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY----- 123 (317)
Q Consensus 63 ------~~~~~~~~~~~~~~~i------~~~~~~~~~~--~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~----- 123 (317)
.++..... .....+ ...+...... +.....+.+.+++|||++.+..+.++.|++.+++.
T Consensus 99 ~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~ 176 (350)
T 1g8p_A 99 VIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVE 176 (350)
T ss_dssp EEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEEC
T ss_pred cccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEE
Confidence 01111110 111111 1111110000 00000123679999999999999999999999963
Q ss_pred --------cCCceEEEEecCCC-cCchhHhhhcce-eeecCCCH-HHHHHHHHHH-------------------------
Q psy879 124 --------SNTTRFALACNNSE-KIIEPIQSRCAM-LRYNKLTD-AQLLSKVIEI------------------------- 167 (317)
Q Consensus 124 --------~~~~~~il~~~~~~-~l~~~i~sR~~~-i~f~~~~~-~~~~~~l~~~------------------------- 167 (317)
+..+.+|+++|... .+.+++.+||.. +.+++|+. ++...++...
T Consensus 177 ~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 256 (350)
T 1g8p_A 177 RDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQI 256 (350)
T ss_dssp CTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHH
Confidence 23667788888744 899999999987 99999954 4443555431
Q ss_pred ----HHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHhhh-----CCCcccHHHHHhhc
Q psy879 168 ----CEKENISHTNDGLEAIVFTAQG----DMRQALNNLQSTHN-----GFGHVTAEYVFKVC 217 (317)
Q Consensus 168 ----~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~~~~-----~~~~i~~~~v~~~~ 217 (317)
....++.+++++++.++..+.+ ++|.+++.++.+.. +...|+.+++..++
T Consensus 257 ~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 257 LEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVA 319 (350)
T ss_dssp HHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 2234568999999999988766 89999999975432 44568888886543
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.83 E-value=3.3e-20 Score=169.99 Aligned_cols=189 Identities=17% Similarity=0.260 Sum_probs=138.1
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCC-CcC-
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASN-DRG- 74 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~-~~~- 74 (317)
++|+|.+|++++|++..++.+...+..+..+|++|+||||+|||++++++++.+.+.. .+..++.+++.. ..+
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 251 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE 251 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccch
Confidence 5799999999999999999999999887777899999999999999999999985422 133455555431 111
Q ss_pred -hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC-----cCchhHhhhcc
Q psy879 75 -IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE-----KIIEPIQSRCA 148 (317)
Q Consensus 75 -~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~-----~l~~~i~sR~~ 148 (317)
...+...+..+.. ..+.|++|| ...+.++.|++.|+. +...+|++||... .+++++.+||.
T Consensus 252 ~e~~~~~~~~~~~~-------~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 252 FEDRLKKVMDEIRQ-------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp -CTTHHHHHHHHHT-------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred HHHHHHHHHHHHHh-------cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 1223344443322 346799999 455677888888874 5678888888876 58899999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHhhh
Q psy879 149 MLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQG------DMRQALNNLQSTHN 203 (317)
Q Consensus 149 ~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------d~r~~i~~l~~~~~ 203 (317)
.+.|++|+.++...++...+.. +++.++++++..++..+.+ -++.+++.++.++.
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 9999999999999999987765 7888999999998876543 25679988876543
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.83 E-value=8.6e-20 Score=158.93 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=136.8
Q ss_pred CcccCCHHHHHHHHHHHhcC--------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHH
Q psy879 10 SDIVGNEDTVERLKVFSSSG--------NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~--------~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (317)
++++|++.+++.+...+..+ ++. +++|+||||||||++|+++++.+.+.. ..++.+++...........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~--~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG--GGEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC--cceEEeecccccccccHHH
Confidence 46889999999988887654 222 599999999999999999999985433 2344444432222111111
Q ss_pred HH---------------HHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEec
Q psy879 81 KI---------------KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALACN 134 (317)
Q Consensus 81 ~~---------------~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~~ 134 (317)
.+ ...... ..+.+++|||+|.+..+.++.|++++++.. .++.+|++||
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRR------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHH------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred hcCCCCccccccccchHHHHHHh------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 11 111111 345799999999999999999999999754 3666899999
Q ss_pred C--------------------------CCcCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHHc---------CCCCCHH
Q psy879 135 N--------------------------SEKIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEKE---------NISHTND 178 (317)
Q Consensus 135 ~--------------------------~~~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~~---------~~~i~~~ 178 (317)
. ...+.+++.+|| ..+.|.|++.+++..++...+... ...++++
T Consensus 169 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 248 (311)
T 4fcw_A 169 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEA 248 (311)
T ss_dssp TTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHH
T ss_pred cCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHH
Confidence 8 346789999999 459999999999999988765542 3568899
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHhh
Q psy879 179 GLEAIVFTA---QGDMRQALNNLQSTH 202 (317)
Q Consensus 179 ~~~~l~~~~---~gd~r~~i~~l~~~~ 202 (317)
+++.++..+ .|++|.+.+.++.++
T Consensus 249 ~~~~l~~~~~~~~gn~R~L~~~i~~~~ 275 (311)
T 4fcw_A 249 AKDFLAERGYDPVFGARPLRRVIQREL 275 (311)
T ss_dssp HHHHHHHHSCBTTTBTTTHHHHHHHHT
T ss_pred HHHHHHHhCCCccCCchhHHHHHHHHH
Confidence 999999865 489999988887654
No 50
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-18 Score=156.27 Aligned_cols=197 Identities=17% Similarity=0.277 Sum_probs=135.0
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~- 72 (317)
-+|+|+.|.+++++.|...+.- | .+| .+|||||||||||++|+++|+++ +..++.++++..
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhh
Confidence 3699999999999988776531 3 233 39999999999999999999997 344666665432
Q ss_pred ---c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhhc--cCCceEEE
Q psy879 73 ---R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEIY--SNTTRFAL 131 (317)
Q Consensus 73 ---~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~~--~~~~~~il 131 (317)
. +...++..+..... ..+.|+++||+|.+.. ...+.|+..|+.. ..++.+|+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~-------~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~ 316 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARE-------NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHH-------TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEE
T ss_pred ccccchhHHHHHHHHHHHHH-------cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 1 22345555554433 3578999999996521 2356777777753 44677899
Q ss_pred EecCCCcCchhHhh--hcce-eeec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHH--h
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYN-KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG----DMRQALNNLQS--T 201 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~-~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----d~r~~i~~l~~--~ 201 (317)
+||.++.+++++.+ |+.. |+|+ .|+.++...++..++++..+. ++..++.++..+.| |++.+.+..-. +
T Consensus 317 aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 317 ATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp EESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987 6665 8996 688899999998887754432 12236788877654 44444433211 1
Q ss_pred hhCCCcccHHHHHhh
Q psy879 202 HNGFGHVTAEYVFKV 216 (317)
Q Consensus 202 ~~~~~~i~~~~v~~~ 216 (317)
..+...|+.+++.++
T Consensus 396 r~~~~~i~~~d~~~A 410 (428)
T 4b4t_K 396 RKNRYVILQSDLEEA 410 (428)
T ss_dssp HTTCSSBCHHHHHHH
T ss_pred HCCCCCCCHHHHHHH
Confidence 124556777776554
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=1.7e-18 Score=149.98 Aligned_cols=185 Identities=18% Similarity=0.200 Sum_probs=128.9
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSS-----------G-NV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
++.+.+|++++|++.+++.|..++.. | .. .+++|+||||||||++++++++.+. ..++.+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEh
Confidence 45667899999999999998887653 1 22 3499999999999999999999862 34566654
Q ss_pred CCC------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhhc--cCCc
Q psy879 70 SND------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEIY--SNTT 127 (317)
Q Consensus 70 ~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~~--~~~~ 127 (317)
... .....++..+..... ..+.+++|||+|.+... .++.|+..++.. ..++
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQ-------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHH-------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHh-------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 321 111223333333221 24689999999987543 367888888743 4567
Q ss_pred eEEEEecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy879 128 RFALACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQS 200 (317)
Q Consensus 128 ~~il~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~ 200 (317)
.+|++||.++.+++++.+ |+.. +.|++|+.++..+++...+++.++. ++..++.++..+.| +.+.+.+.++.
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~ 231 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQR 231 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHH
Confidence 889999999999999988 8864 9999999999999999888765543 22234566666544 23334444433
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.80 E-value=3.7e-18 Score=155.23 Aligned_cols=198 Identities=21% Similarity=0.210 Sum_probs=139.5
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc-
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------GNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR- 73 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 73 (317)
.+|++++|++++++.+...+.. .++| +++|+||||||||+++++++..+. .+++.++++...
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~~~~ 87 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSDFVE 87 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGTTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHHHHH
Confidence 3799999999998887766431 2233 499999999999999999999863 346666554321
Q ss_pred -----ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhh--ccCCceEEEE
Q psy879 74 -----GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEI--YSNTTRFALA 132 (317)
Q Consensus 74 -----~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~--~~~~~~~il~ 132 (317)
+...++..+..... ..+.+|+|||+|.+.. ..++.|+..|+. ....+++|++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~-------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 160 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKA-------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAA 160 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHH-------TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEE
T ss_pred HHhcccHHHHHHHHHHHHh-------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEe
Confidence 12233444333322 3578999999998843 245677777764 2456788889
Q ss_pred ecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCCCH-HHHHHHHHHhhh----
Q psy879 133 CNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTND-GLEAIVFTAQGDM-RQALNNLQSTHN---- 203 (317)
Q Consensus 133 ~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~gd~-r~~i~~l~~~~~---- 203 (317)
||.++.+++++.+ ||.. +.+++|+.++..+++...++... ++++ .+..++..+.|.. +.+.+.++.++.
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR 238 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999886 7764 99999999999999988776543 3333 3677888888866 566666654332
Q ss_pred -CCCcccHHHHHhhcC
Q psy879 204 -GFGHVTAEYVFKVCD 218 (317)
Q Consensus 204 -~~~~i~~~~v~~~~~ 218 (317)
+...|+.+++..+++
T Consensus 239 ~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 239 EGRDKITMKDFEEAID 254 (476)
T ss_dssp TTCSSBCHHHHHHHHH
T ss_pred cCCCeecHHHHHHHHH
Confidence 346788888876543
No 53
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.80 E-value=1e-18 Score=148.73 Aligned_cols=203 Identities=15% Similarity=0.214 Sum_probs=133.7
Q ss_pred CCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHH-HH
Q psy879 8 TFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI-KM 84 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 84 (317)
+|++++|+...++.+...+.. ....+++|+||||||||++|+++++.... ...+++.+++... ..+.+...+ +.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~--~~~~~~~v~~~~~-~~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL-NENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT--TTSCEEEEEGGGS-CHHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc--cCCCeEEEecCCC-ChhHHHHHhcCC
Confidence 689999998887776655432 22246999999999999999999987532 2345777776542 222222111 10
Q ss_pred ----HHhh----cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC-------Cc
Q psy879 85 ----FAQQ----KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS-------EK 138 (317)
Q Consensus 85 ----~~~~----~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~-------~~ 138 (317)
+... ...+......+++|||++.+..+.++.|++++++. +.++.+|+++|.. ..
T Consensus 81 ~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 0000 00000124579999999999999999999999863 3567899999875 24
Q ss_pred CchhHhhhcce--eeecCCCH--HHHHHHH----HHHHHHcCC----CCCHHHHHHHHHhc-CCCHHHHHHHHHHhhh--
Q psy879 139 IIEPIQSRCAM--LRYNKLTD--AQLLSKV----IEICEKENI----SHTNDGLEAIVFTA-QGDMRQALNNLQSTHN-- 203 (317)
Q Consensus 139 l~~~i~sR~~~--i~f~~~~~--~~~~~~l----~~~~~~~~~----~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~-- 203 (317)
+.+.+.+|+.. +.++++.+ +++..++ ...+...+. .+++++++.+.... .||+|++.+.++.++.
T Consensus 161 ~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 161 FRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp SCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 77999999964 77888876 5665543 344444554 67899999988764 8999999999987653
Q ss_pred CCCcccHHHH
Q psy879 204 GFGHVTAEYV 213 (317)
Q Consensus 204 ~~~~i~~~~v 213 (317)
....|+.+++
T Consensus 241 ~~~~i~~~~l 250 (265)
T 2bjv_A 241 GTSDYPLDDI 250 (265)
T ss_dssp CCSSSCBCCC
T ss_pred CCCcCcHHHc
Confidence 4456766655
No 54
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.79 E-value=5.1e-20 Score=157.01 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=136.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSS-----------SGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~-----------~~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
.++.+.+|++++|++.+++.+...+. ....+ +++|+||||||||++|+++++.+..+ ++.+++
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~v~~ 77 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP-----FFSMGG 77 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC-----CCCCCS
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEech
Confidence 46777889999999998888877664 12223 49999999999999999999987432 333333
Q ss_pred CCC------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH---------------HHHHHHHHhhhcc---C
Q psy879 70 SND------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG---------------AQQALRRTMEIYS---N 125 (317)
Q Consensus 70 ~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~---------------~~~~ll~~le~~~---~ 125 (317)
... .+...++..+..... ..+.+++|||+|.+... .++.|+..++... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKK-------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHH-------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred HHHHHhhcchHHHHHHHHHHHHHh-------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 211 011112222222221 24579999999998654 2455666666543 2
Q ss_pred CceEEEEecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHh
Q psy879 126 TTRFALACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG-DMRQALNNLQST 201 (317)
Q Consensus 126 ~~~~il~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-d~r~~i~~l~~~ 201 (317)
.+.+|+++|.+..+.+++.+ |+.. +.|++|+.++...++...+....+. ++..++.++..+.| ..|.+.+.++.+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a 229 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEA 229 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 36788889989889999988 6643 9999999999999998877643322 22235566666665 334555555443
Q ss_pred hh-----CCCcccHHHHHhhcCCC
Q psy879 202 HN-----GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 202 ~~-----~~~~i~~~~v~~~~~~~ 220 (317)
+. +...|+.+++..++...
T Consensus 230 ~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 230 ALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHhccCCcCHHHHHHHHHHH
Confidence 32 24579999988876653
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=8.1e-19 Score=141.51 Aligned_cols=159 Identities=16% Similarity=0.233 Sum_probs=113.2
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCceEEecCCC----C
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF-----KDAVLELNASN----D 72 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~~~~~~~----~ 72 (317)
++|+|.+|++++|+++.++.+...+..+...+++|+||+|+|||++++.+++.+.+... +..++.+++.. .
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA 93 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTT
T ss_pred HHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccC
Confidence 57899999999999999999999998877778999999999999999999999753211 23344444321 1
Q ss_pred cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------HHHHHHHHhhhccCCceEEEEecCCC-----cC
Q psy879 73 RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------AQQALRRTMEIYSNTTRFALACNNSE-----KI 139 (317)
Q Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------~~~~ll~~le~~~~~~~~il~~~~~~-----~l 139 (317)
.........+..+..... ....+.+++|||+|.+... .++.|..+++. .++.+|++++.+. .+
T Consensus 94 ~~~~~~~~~~~~~~~~~~--~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~ 169 (195)
T 1jbk_A 94 KYRGEFEERLKGVLNDLA--KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEK 169 (195)
T ss_dssp CSHHHHHHHHHHHHHHHH--HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTT
T ss_pred CccccHHHHHHHHHHHHh--hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhc
Confidence 111122222222211100 0145679999999999633 36677777764 4677888888765 67
Q ss_pred chhHhhhcceeeecCCCHHHHHHHH
Q psy879 140 IEPIQSRCAMLRYNKLTDAQLLSKV 164 (317)
Q Consensus 140 ~~~i~sR~~~i~f~~~~~~~~~~~l 164 (317)
.+++.+||..+.|++|+.++..+++
T Consensus 170 ~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 170 DAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHhceeecCCCCHHHHHHHh
Confidence 8999999999999999999987764
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.78 E-value=9e-19 Score=171.74 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=137.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCCCcC--
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASNDRG-- 74 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~~~~-- 74 (317)
++|+|.+|++++|+++.++.+...+..+..++++|+||||+|||++++.+++.+.+.. .+..++.+++.....
T Consensus 162 ~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~ 241 (854)
T 1qvr_A 162 RLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA 241 (854)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------
T ss_pred HHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC
Confidence 5789999999999999999999999888877899999999999999999999984321 134456665543211
Q ss_pred ------hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC--------HHHHHHHHHHhhhccCCceEEEEecCCC---
Q psy879 75 ------IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT--------DGAQQALRRTMEIYSNTTRFALACNNSE--- 137 (317)
Q Consensus 75 ------~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~--------~~~~~~ll~~le~~~~~~~~il~~~~~~--- 137 (317)
...+...+...... ..+.|++|||++.+. .+..+.|..+++. ....+|++|+.+.
T Consensus 242 ~~~g~~~~~l~~~~~~~~~~------~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 242 KYRGEFEERLKAVIQEVVQS------QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYRE 313 (854)
T ss_dssp ----CHHHHHHHHHHHHHTT------CSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhc------CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhh
Confidence 11122333332211 356799999999997 3456678888874 4567888887653
Q ss_pred -cCchhHhhhcceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHhhh
Q psy879 138 -KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE----KENISHTNDGLEAIVFTAQG------DMRQALNNLQSTHN 203 (317)
Q Consensus 138 -~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~~~g------d~r~~i~~l~~~~~ 203 (317)
.+.+++.+||..+.|++|+.++...++...+. .+++.++++++..++..+.| -+.++++.++.++.
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHH
Confidence 46899999999999999999999999987655 35788899999988887643 37888888876554
No 57
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.78 E-value=8.5e-19 Score=165.64 Aligned_cols=214 Identities=18% Similarity=0.213 Sum_probs=146.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc--------
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR-------- 73 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~-------- 73 (317)
.+|+|+.|++++|++++++.+...+..|. +++|+|||||||||+++++++.+.+.......+..+..+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p 110 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVP 110 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEE
T ss_pred ccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEe
Confidence 48999999999999999999999999986 89999999999999999999986433211111111111100
Q ss_pred --ChHH--------------------------------------------------HHHHHHHHHhh-------------
Q psy879 74 --GIDT--------------------------------------------------VRNKIKMFAQQ------------- 88 (317)
Q Consensus 74 --~~~~--------------------------------------------------i~~~~~~~~~~------------- 88 (317)
.... ..+.++.....
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHE 190 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccc
Confidence 0000 11111100000
Q ss_pred ---cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc---------------------cCCceEEEEecCC--CcCchh
Q psy879 89 ---KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY---------------------SNTTRFALACNNS--EKIIEP 142 (317)
Q Consensus 89 ---~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~---------------------~~~~~~il~~~~~--~~l~~~ 142 (317)
+..+..+.+++++|||++.+.+..++.|++.|++. +.++++|+++|.. ..+.++
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~ 270 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPA 270 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHH
T ss_pred cccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHH
Confidence 00000124569999999999999999999999832 2356789999876 579999
Q ss_pred Hhhhcc----eeeecCC---CHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHhc---CC-------CHHHHHHHHHH
Q psy879 143 IQSRCA----MLRYNKL---TDAQLLSKVIEICEKE-----NISHTNDGLEAIVFTA---QG-------DMRQALNNLQS 200 (317)
Q Consensus 143 i~sR~~----~i~f~~~---~~~~~~~~l~~~~~~~-----~~~i~~~~~~~l~~~~---~g-------d~r~~i~~l~~ 200 (317)
+.+||. .+.|++. +++.+..++...+... ...++++++..+++.+ .| ++|.+.++++.
T Consensus 271 l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~ 350 (604)
T 3k1j_A 271 LRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRA 350 (604)
T ss_dssp HHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHH
T ss_pred HHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHH
Confidence 999996 3665433 4455666665544332 2578999999888754 55 59999999876
Q ss_pred hhh-----CCCcccHHHHHhhc
Q psy879 201 THN-----GFGHVTAEYVFKVC 217 (317)
Q Consensus 201 ~~~-----~~~~i~~~~v~~~~ 217 (317)
+.. +...|+.+++.++.
T Consensus 351 A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 351 AGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHhcCcccccHHHHHHHH
Confidence 432 45679999888766
No 58
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=3.8e-18 Score=145.72 Aligned_cols=178 Identities=13% Similarity=0.187 Sum_probs=120.9
Q ss_pred CcccCCHHHHHHHHH-------HHh---cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-cC--h-
Q psy879 10 SDIVGNEDTVERLKV-------FSS---SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND-RG--I- 75 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~-------~l~---~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-~~--~- 75 (317)
..++|+....+.+.. .+. .....+++|+||||||||++|+++++.+. ..++.+++.+. .+ .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN-----FPFIKICSPDKMIGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSEEEEECGGGCTTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeCHHHhcCCchH
Confidence 567787655444333 443 22334599999999999999999999863 34566654321 11 1
Q ss_pred ---HHHHHHHHHHHhhcccCCCCceeEEEEeCCCCC----------CHHHHHHHHHHhhh---ccCCceEEEEecCCCcC
Q psy879 76 ---DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM----------TDGAQQALRRTMEI---YSNTTRFALACNNSEKI 139 (317)
Q Consensus 76 ---~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l----------~~~~~~~ll~~le~---~~~~~~~il~~~~~~~l 139 (317)
..++..+.... ...+.+|+|||+|.+ ....++.|...++. .+..+.+|++||.+..+
T Consensus 108 ~~~~~~~~~~~~~~-------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 108 AKCQAMKKIFDDAY-------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp HHHHHHHHHHHHHH-------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHH-------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 22233333221 145889999999987 44556677777764 33455577778877666
Q ss_pred ch-hHhhhc-ceeeecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHhhhC
Q psy879 140 IE-PIQSRC-AMLRYNKLTD-AQLLSKVIEICEKENISHTNDGLEAIVFTAQG-----DMRQALNNLQSTHNG 204 (317)
Q Consensus 140 ~~-~i~sR~-~~i~f~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-----d~r~~i~~l~~~~~~ 204 (317)
.+ .+.+|+ ..+.|++++. +++..++... + .++++.+..++..+.| ++|++++.++.+...
T Consensus 181 ~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~----~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 181 QEMEMLNAFSTTIHVPNIATGEQLLEALELL----G-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp HHTTCTTTSSEEEECCCEEEHHHHHHHHHHH----T-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred chhhhhcccceEEcCCCccHHHHHHHHHHhc----C-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 66 678885 4599999988 6666666542 2 4689999999999988 999999999987553
No 59
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=3.2e-18 Score=159.42 Aligned_cols=202 Identities=20% Similarity=0.262 Sum_probs=134.8
Q ss_pred CcccCCHHHHHHHHHHHh------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH----
Q psy879 10 SDIVGNEDTVERLKVFSS------SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR---- 79 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~------~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~---- 79 (317)
++++|++++++.+...+. ....++++|+||||||||+++++++..+.. .+..+++........+.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-----KFVRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-----EEEEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEEEecccchhhhhhhHHH
Confidence 458999999888765432 223346999999999999999999999732 24444443211111110
Q ss_pred -------HHHHHHHhhcccCCCCceeEEEEeCCCCCCHH----HHHHHHHHhhhcc---------------CCceEEEEe
Q psy879 80 -------NKIKMFAQQKVTLPPGRHKIVILDEADSMTDG----AQQALRRTMEIYS---------------NTTRFALAC 133 (317)
Q Consensus 80 -------~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~----~~~~ll~~le~~~---------------~~~~~il~~ 133 (317)
..+...... ......++++||+|.+..+ .++.|++.|+... .++++|+++
T Consensus 156 ~~ig~~~~~~~~~~~~----a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt 231 (543)
T 3m6a_A 156 TYVGAMPGRIIQGMKK----AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA 231 (543)
T ss_dssp --------CHHHHHHT----TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC
T ss_pred HHhccCchHHHHHHHH----hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc
Confidence 111111111 1124459999999999887 4588888887432 457899999
Q ss_pred cCCCcCchhHhhhcceeeecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHhcC--CCHHHHHHHHHHh
Q psy879 134 NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE-----KE-----NISHTNDGLEAIVFTAQ--GDMRQALNNLQST 201 (317)
Q Consensus 134 ~~~~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~-----~~-----~~~i~~~~~~~l~~~~~--gd~r~~i~~l~~~ 201 (317)
|....+++++++||.++.|++|+.++...++...+. .. ++.++++++..++.... |++|.+-+.++.+
T Consensus 232 N~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 232 NNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAI 311 (543)
T ss_dssp SSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHH
T ss_pred CccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHH
Confidence 999999999999999999999999999999887652 22 44678999998877543 6788777666543
Q ss_pred hh-----------CCCcccHHHHHhhcCCC
Q psy879 202 HN-----------GFGHVTAEYVFKVCDEP 220 (317)
Q Consensus 202 ~~-----------~~~~i~~~~v~~~~~~~ 220 (317)
+. ....|+.+++.++++..
T Consensus 312 ~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 312 CRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 22 12357888887766544
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.77 E-value=2.3e-18 Score=167.11 Aligned_cols=189 Identities=17% Similarity=0.262 Sum_probs=137.5
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCCC-cC-
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASND-RG- 74 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~~-~~- 74 (317)
++|+|..|++++|+++.++.+...+..+..+|++|+||||||||++|+++++.+.+.. .+..++.++.... .+
T Consensus 172 ~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~ 251 (758)
T 3pxi_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE 251 (758)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred HHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccch
Confidence 5789999999999999999999999888878899999999999999999999984322 1333444443110 11
Q ss_pred -hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC-----cCchhHhhhcc
Q psy879 75 -IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE-----KIIEPIQSRCA 148 (317)
Q Consensus 75 -~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~-----~l~~~i~sR~~ 148 (317)
...++..+..+.. ..+.+++|| ...+.++.|+..++ ...+.+|++||... .+.+++.+||.
T Consensus 252 ~e~~l~~~~~~~~~-------~~~~iLfiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~ 318 (758)
T 3pxi_A 252 FEDRLKKVMDEIRQ-------AGNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (758)
T ss_dssp -CTTHHHHHHHHHT-------CCCCEEEEC----C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred HHHHHHHHHHHHHh-------cCCEEEEEc----CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCc
Confidence 1133444444332 356799999 44567788888888 45688899998877 68999999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHhhh
Q psy879 149 MLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQ------GDMRQALNNLQSTHN 203 (317)
Q Consensus 149 ~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------gd~r~~i~~l~~~~~ 203 (317)
.+.|++|+.++...++...+.. +++.++++++..++..+. ..++.++..++.++.
T Consensus 319 ~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 9999999999999999977655 678899999988887653 345788888876543
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.77 E-value=1.1e-18 Score=155.92 Aligned_cols=203 Identities=19% Similarity=0.223 Sum_probs=133.8
Q ss_pred cccCCHHHHHHHHHHHh----c--------------------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCC
Q psy879 11 DIVGNEDTVERLKVFSS----S--------------------------GNVPNIIISGPPGVGKTTTILCLARILLGPSF 60 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~----~--------------------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~ 60 (317)
.++||+++++.+..++. . ....+++|+||||||||++|+++++.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 47999999999887762 1 1233599999999999999999999862
Q ss_pred CCceEEecCCCCc--Ch--HHHHHHHHHHHhhc-ccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhh
Q psy879 61 KDAVLELNASNDR--GI--DTVRNKIKMFAQQK-VTLPPGRHKIVILDEADSMTDG--------------AQQALRRTME 121 (317)
Q Consensus 61 ~~~~~~~~~~~~~--~~--~~i~~~~~~~~~~~-~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le 121 (317)
..++.+++.... +. ......+..+.... .......+.+++|||++.+... .++.|++.|+
T Consensus 98 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 98 -IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp -CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred -CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 335555543211 00 01111111111110 0000125689999999999887 8999999999
Q ss_pred hcc---------------------CCceEEEEecC-----------------------------------------CCcC
Q psy879 122 IYS---------------------NTTRFALACNN-----------------------------------------SEKI 139 (317)
Q Consensus 122 ~~~---------------------~~~~~il~~~~-----------------------------------------~~~l 139 (317)
+.. .++.+|+++|. ...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (376)
T 1um8_A 177 GSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGL 256 (376)
T ss_dssp CCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTC
T ss_pred ccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCC
Confidence 541 44567777652 1136
Q ss_pred chhHhhhc-ceeeecCCCHHHHHHHHHH----HHH---------HcCCCCCHHHHHHHHHhcC---CCHHHHHHHHHHhh
Q psy879 140 IEPIQSRC-AMLRYNKLTDAQLLSKVIE----ICE---------KENISHTNDGLEAIVFTAQ---GDMRQALNNLQSTH 202 (317)
Q Consensus 140 ~~~i~sR~-~~i~f~~~~~~~~~~~l~~----~~~---------~~~~~i~~~~~~~l~~~~~---gd~r~~i~~l~~~~ 202 (317)
.+++.+|+ .++.|++++.+++..++.. .+. ..++.+++++++.++..+. |++|.+.+.++.++
T Consensus 257 ~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~ 336 (376)
T 1um8_A 257 IPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFC 336 (376)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHH
T ss_pred ChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 78999999 5599999999999998862 111 1245689999999998865 89999999988754
Q ss_pred hC---------C--CcccHHHHHhhcC
Q psy879 203 NG---------F--GHVTAEYVFKVCD 218 (317)
Q Consensus 203 ~~---------~--~~i~~~~v~~~~~ 218 (317)
.. . ..|+.+++.+...
T Consensus 337 ~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 337 LDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 31 1 1478887776443
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.77 E-value=7.8e-18 Score=145.78 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=138.1
Q ss_pred CcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHh
Q psy879 10 SDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 87 (317)
++++|+....+.+...+.. ....+++|+||||||||++|+++++... ..+.+++.+++... ....+...+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~-~~~l~~~~lfg~~~ 78 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAAL-NESLLESELFGHEK 78 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSC-CHHHHHHHHTCCCS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCC-ChHHHHHHhcCccc
Confidence 4688988877776666543 3334699999999999999999999742 23445677776542 22222111100000
Q ss_pred hccc---------CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC-------CcCc
Q psy879 88 QKVT---------LPPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS-------EKII 140 (317)
Q Consensus 88 ~~~~---------~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~-------~~l~ 140 (317)
..+. +......++||||++.+..+.+..|++.+++. +.++++|++||.. ..+.
T Consensus 79 g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr 158 (304)
T 1ojl_A 79 GAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFR 158 (304)
T ss_dssp SCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSC
T ss_pred cccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcH
Confidence 0000 00013469999999999999999999999964 2457899999875 2467
Q ss_pred hhHhhhcce--eeecCCC--HHHHHHHHHHHH----HHcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHhhh--CCC
Q psy879 141 EPIQSRCAM--LRYNKLT--DAQLLSKVIEIC----EKEN---ISHTNDGLEAIVFTA-QGDMRQALNNLQSTHN--GFG 206 (317)
Q Consensus 141 ~~i~sR~~~--i~f~~~~--~~~~~~~l~~~~----~~~~---~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~--~~~ 206 (317)
+.+.+|+.. +.++|+. .+++..++...+ ...+ ..+++++++.+...+ .||+|++.+.++.++. ...
T Consensus 159 ~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~~ 238 (304)
T 1ojl_A 159 QDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGE 238 (304)
T ss_dssp HHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 889999865 6688877 456665555433 3333 568999999999886 9999999999987654 445
Q ss_pred cccHHHHHh
Q psy879 207 HVTAEYVFK 215 (317)
Q Consensus 207 ~i~~~~v~~ 215 (317)
.|+.+++..
T Consensus 239 ~i~~~~l~~ 247 (304)
T 1ojl_A 239 YISERELPL 247 (304)
T ss_dssp SBCGGGSCG
T ss_pred cccHHhhhh
Confidence 677777644
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=6.6e-18 Score=154.78 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=131.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC
Q psy879 4 YRPQTFSDIVGNEDTVERLKVFSSS-------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70 (317)
Q Consensus 4 y~P~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 70 (317)
+++.+|++++|++..++.+..++.. ....++||+||||||||++|+++++.+ +..++.+++.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn~~ 272 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGP 272 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEEHH
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEEch
Confidence 4567899999999999998887753 233359999999999999999999985 3456766653
Q ss_pred CC----cC--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhc--cCCceEEE
Q psy879 71 ND----RG--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIY--SNTTRFAL 131 (317)
Q Consensus 71 ~~----~~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~--~~~~~~il 131 (317)
.. .+ ...++..+..... +.+.+|+|||+|.+.. ..++.|++.|+.. +.++++|.
T Consensus 273 ~l~~~~~g~~~~~~~~~f~~A~~-------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIa 345 (489)
T 3hu3_A 273 EIMSKLAGESESNLRKAFEEAEK-------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (489)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHH-------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred HhhhhhcchhHHHHHHHHHHHHh-------cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEE
Confidence 21 11 1223333333221 3467999999987643 5688899999853 45677888
Q ss_pred EecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGD-MRQALNNLQS 200 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd-~r~~i~~l~~ 200 (317)
+||.+..+.+++++ ||.. +.|+.|+.++...++..++....+. .+..+..++..+.|. .+.+.++++.
T Consensus 346 aTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~ 417 (489)
T 3hu3_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSE 417 (489)
T ss_dssp EESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred ecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHH
Confidence 99999999999999 6654 9999999999999999887654443 233467778877774 3334344443
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.76 E-value=7.2e-18 Score=163.61 Aligned_cols=184 Identities=16% Similarity=0.235 Sum_probs=133.0
Q ss_pred CcccCCHHHHHHHHHHHhcCC--------C-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH-H
Q psy879 10 SDIVGNEDTVERLKVFSSSGN--------V-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV-R 79 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i-~ 79 (317)
++++||+++++.+...+.... + ++++|+||||||||++|+++++.+.+. ...++.++++........ .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccccc
Confidence 468999999988877775321 1 269999999999999999999998543 234666665432211000 1
Q ss_pred HHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh-----------ccCCceEEEEecCCCc----------
Q psy879 80 NKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI-----------YSNTTRFALACNNSEK---------- 138 (317)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~-----------~~~~~~~il~~~~~~~---------- 138 (317)
..+...... ..+.|++|||++.+.++.++.|++.|++ ...++++|++||....
T Consensus 569 ~~l~~~~~~------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~ 642 (758)
T 3pxi_A 569 GQLTEKVRR------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELK 642 (758)
T ss_dssp --CHHHHHH------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHH
T ss_pred chhhHHHHh------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHH
Confidence 111111111 3467999999999999999999999997 3457889999996443
Q ss_pred --CchhHhhhc-ceeeecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHh
Q psy879 139 --IIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEK---------ENISHTNDGLEAIVFT---AQGDMRQALNNLQST 201 (317)
Q Consensus 139 --l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~---------~~~~i~~~~~~~l~~~---~~gd~r~~i~~l~~~ 201 (317)
+.|.+.+|+ ..+.|+|++.+++..++...+.. ..+.+++++++.++.. ..|+.|.+-+.++..
T Consensus 643 ~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 643 RAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred hhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 789999999 66999999999999998876654 2456889999999875 457788777777654
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=9.1e-18 Score=163.05 Aligned_cols=207 Identities=15% Similarity=0.168 Sum_probs=147.3
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCceEEecCCC-----
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF-----KDAVLELNASN----- 71 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~~~~~~~----- 71 (317)
++|+|.+|++++|+++.++.+...+......+++|+||||||||++++.+++.+.+... +..++.++...
T Consensus 178 ~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~ 257 (758)
T 1r6b_X 178 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT 257 (758)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCC
T ss_pred HHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccc
Confidence 57899999999999999999999998877778999999999999999999998853221 22233333221
Q ss_pred -CcC--hHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC---------HHHHHHHHHHhhhccCCceEEEEecCC---
Q psy879 72 -DRG--IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT---------DGAQQALRRTMEIYSNTTRFALACNNS--- 136 (317)
Q Consensus 72 -~~~--~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~---------~~~~~~ll~~le~~~~~~~~il~~~~~--- 136 (317)
..+ ...+...+.... ...+.+++|||++.+. .+..+.|..+++. ....+|++|+.+
T Consensus 258 ~~~g~~e~~l~~~~~~~~-------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 258 KYRGDFEKRFKALLKQLE-------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFS 328 (758)
T ss_dssp CCSSCHHHHHHHHHHHHS-------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHH
T ss_pred cccchHHHHHHHHHHHHH-------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHh
Confidence 111 122333333221 1346899999999982 3345556556653 456778888754
Q ss_pred --CcCchhHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHhhh-
Q psy879 137 --EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK----ENISHTNDGLEAIVFTAQG------DMRQALNNLQSTHN- 203 (317)
Q Consensus 137 --~~l~~~i~sR~~~i~f~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------d~r~~i~~l~~~~~- 203 (317)
...++++.+||..+.|++|+.++...++...+.. +++.++++++..++..+.| .+..+++.++.++.
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~ 408 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHH
Confidence 2567899999999999999999999999887654 6788999999888876543 35577777765432
Q ss_pred --------CCCcccHHHHHhhc
Q psy879 204 --------GFGHVTAEYVFKVC 217 (317)
Q Consensus 204 --------~~~~i~~~~v~~~~ 217 (317)
....++.+++..++
T Consensus 409 ~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 409 ARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHSSSCCCCCSCCHHHHHHHH
T ss_pred HhcccccccCCccCHHHHHHHH
Confidence 23467787776543
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=2.4e-17 Score=160.06 Aligned_cols=180 Identities=16% Similarity=0.232 Sum_probs=131.5
Q ss_pred CcccCCHHHHHHHHHHHhc---C-----CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc-------
Q psy879 10 SDIVGNEDTVERLKVFSSS---G-----NV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR------- 73 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~---~-----~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~------- 73 (317)
.+++||+++++.+..++.. | ++ .+++|+||||||||++|+++++.+. ..++.++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhhHhh
Confidence 4588999999888777652 1 22 2599999999999999999999972 234444433211
Q ss_pred ---------ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEe
Q psy879 74 ---------GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALAC 133 (317)
Q Consensus 74 ---------~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~ 133 (317)
+.+.-......+.. ..+.|++|||++++.++.++.|++.|++.. .++++|+++
T Consensus 533 l~g~~~g~~g~~~~~~l~~~~~~-------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 533 LIGAPPGYVGFDQGGLLTDAVIK-------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp SCCCCSCSHHHHHTTHHHHHHHH-------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred hcCCCCCCcCccccchHHHHHHh-------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 11111111122211 357899999999999999999999999642 467799999
Q ss_pred cCCC-------------------------cCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHHc---------CCCCCHH
Q psy879 134 NNSE-------------------------KIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEKE---------NISHTND 178 (317)
Q Consensus 134 ~~~~-------------------------~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~~---------~~~i~~~ 178 (317)
|... .+.+++.+|+ ..+.|++++.+++..++...+.+. .+.++++
T Consensus 606 N~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 685 (758)
T 1r6b_X 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQE 685 (758)
T ss_dssp CSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHH
T ss_pred CcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHH
Confidence 8743 5789999999 569999999999999998877532 3468899
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHh
Q psy879 179 GLEAIVFTA---QGDMRQALNNLQST 201 (317)
Q Consensus 179 ~~~~l~~~~---~gd~r~~i~~l~~~ 201 (317)
+++.+++.+ +++.|.+.+.++..
T Consensus 686 a~~~l~~~~~~~~~g~R~l~~~i~~~ 711 (758)
T 1r6b_X 686 ARNWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_dssp HHHHHHHHHCBTTTBTTTHHHHHHHH
T ss_pred HHHHHHHhCCCcCCCchHHHHHHHHH
Confidence 999999876 55577777777654
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.75 E-value=2.1e-18 Score=138.46 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=106.6
Q ss_pred cccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCceEEecCCCC----
Q psy879 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-----FKDAVLELNASND---- 72 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~~~~~~~~---- 72 (317)
++|+|.+|++++|++..++.+...+..+..++++|+||+|+|||++++.+++.+.+.. .+..++.++....
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (187)
T 2p65_A 14 ALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGA 93 (187)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHC
T ss_pred HHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCC
Confidence 5789999999999999999999999887777899999999999999999999975421 1233444432210
Q ss_pred cChHH----HHHHHHHHHhhcccCCCCceeEEEEeCCCCCC---------HHHHHHHHHHhhhccCCceEEEEecCCC--
Q psy879 73 RGIDT----VRNKIKMFAQQKVTLPPGRHKIVILDEADSMT---------DGAQQALRRTMEIYSNTTRFALACNNSE-- 137 (317)
Q Consensus 73 ~~~~~----i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~---------~~~~~~ll~~le~~~~~~~~il~~~~~~-- 137 (317)
..... +...+..+... ..+.+++|||++.+. .+..+.|...++. ..+.+|++++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~ 165 (187)
T 2p65_A 94 KYRGDFEERLKSILKEVQDA------EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYR 165 (187)
T ss_dssp CSHHHHHHHHHHHHHHHHHT------TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhc------CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHH
Confidence 01111 22222222211 356799999999986 4456677777764 5677888888654
Q ss_pred ---cCchhHhhhcceeeecCCC
Q psy879 138 ---KIIEPIQSRCAMLRYNKLT 156 (317)
Q Consensus 138 ---~l~~~i~sR~~~i~f~~~~ 156 (317)
.+.+++.+||..+.+++|+
T Consensus 166 ~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 166 QFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHhccHHHHHhcCcccCCCCC
Confidence 5889999999999998875
No 68
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.74 E-value=2.4e-16 Score=142.34 Aligned_cols=203 Identities=20% Similarity=0.168 Sum_probs=137.3
Q ss_pred CcccCCHHHHHHHHHHH-h----c--CCCceEEE--ECCCCCCHHHHHHHHHHHHcCC----CCCCceEEecCCCCcChH
Q psy879 10 SDIVGNEDTVERLKVFS-S----S--GNVPNIII--SGPPGVGKTTTILCLARILLGP----SFKDAVLELNASNDRGID 76 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l-~----~--~~~~~~ll--~G~~G~GKt~la~~la~~l~~~----~~~~~~~~~~~~~~~~~~ 76 (317)
++++|++..++.|..++ . . +...++++ +||+|+|||++++.+++.+... .....++.+++.......
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67899998888877776 3 2 24446899 9999999999999999887431 112334555542222221
Q ss_pred HHH-H---------------------HHHHHHhhcccCCCCceeEEEEeCCCCCCH------HHHHHHHHHhhhcc----
Q psy879 77 TVR-N---------------------KIKMFAQQKVTLPPGRHKIVILDEADSMTD------GAQQALRRTMEIYS---- 124 (317)
Q Consensus 77 ~i~-~---------------------~~~~~~~~~~~~~~~~~~vliiDE~d~l~~------~~~~~ll~~le~~~---- 124 (317)
.+. . .+...... .+.+.+|+|||++.+.. +....|++.+++.+
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYV-----ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH-----HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 111 1 11111111 13477999999999853 56666777777654
Q ss_pred -CCceEEEEecCCC---cCc---hhHhhhcce-eeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcC------
Q psy879 125 -NTTRFALACNNSE---KII---EPIQSRCAM-LRYNKLTDAQLLSKVIEICEKEN--ISHTNDGLEAIVFTAQ------ 188 (317)
Q Consensus 125 -~~~~~il~~~~~~---~l~---~~i~sR~~~-i~f~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~l~~~~~------ 188 (317)
.++.+|++++.+. .+. +.+.+++.. +.|+|++.+++.+++...+...+ ..++++++..++..++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 4566787887554 333 566676544 99999999999999988776433 2478899999999999
Q ss_pred CCHHHHHHHHHHhhh-----CCCcccHHHHHhhc
Q psy879 189 GDMRQALNNLQSTHN-----GFGHVTAEYVFKVC 217 (317)
Q Consensus 189 gd~r~~i~~l~~~~~-----~~~~i~~~~v~~~~ 217 (317)
|++|.+++.++.+.. +...++.+++..+.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999999998876432 33467777776544
No 69
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.73 E-value=1.4e-16 Score=134.57 Aligned_cols=205 Identities=17% Similarity=0.169 Sum_probs=132.4
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSS-----------GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 70 (317)
.+.+.+|++++|+++++..+...... -.. ++++|+||||+||||++++++..+. ..++.+++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~ 83 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 83 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 45567899999999888876654321 122 3499999999999999999999863 234444432
Q ss_pred CC--cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhhcc--CCceEEEE
Q psy879 71 ND--RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEIYS--NTTRFALA 132 (317)
Q Consensus 71 ~~--~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~~~--~~~~~il~ 132 (317)
+. .........+....+... ...+.++++||+|.+.. ...+.++..++... ....++.+
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHT---TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc
Confidence 10 011112223333333321 12467999999986631 12345555555332 23456667
Q ss_pred ecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHhhh----
Q psy879 133 CNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDG-LEAIVFTAQGDM-RQALNNLQSTHN---- 203 (317)
Q Consensus 133 ~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~gd~-r~~i~~l~~~~~---- 203 (317)
+|.++.+++++.+ |+.. +.|++|+.++..+++...++ +..++++. +..++..+.|.. +.+.+.++.++.
T Consensus 161 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 161 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 238 (254)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 8888999999998 4544 99999999999999987764 44454443 778889888754 566666654332
Q ss_pred -CCCcccHHHHHhhc
Q psy879 204 -GFGHVTAEYVFKVC 217 (317)
Q Consensus 204 -~~~~i~~~~v~~~~ 217 (317)
+...|+.+++.+++
T Consensus 239 ~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 239 EGRRKITMKDLEEAA 253 (254)
T ss_dssp TTCSSBCHHHHHHHT
T ss_pred hcCCCcCHHHHHHHh
Confidence 34568888887654
No 70
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.72 E-value=1.4e-16 Score=145.62 Aligned_cols=203 Identities=17% Similarity=0.181 Sum_probs=137.0
Q ss_pred CCCCCCcccCCHHHHHHHHHHHh---c--------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSS---S--------GNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND 72 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 72 (317)
.+.+|++++|+++++..+...+. . ..+| +++|+||||||||+++++++..+. ..++.+++.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 100 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHH
Confidence 45679999999999888776543 1 1223 499999999999999999999862 34666665432
Q ss_pred c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhhc--cCCceEEEEec
Q psy879 73 R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEIY--SNTTRFALACN 134 (317)
Q Consensus 73 ~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~~--~~~~~~il~~~ 134 (317)
. ........+....+... ...+.++++||+|.+.. ...+.|+..|+.. ....+++.++|
T Consensus 101 ~~~~~g~~~~~v~~lfq~a~---~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn 177 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 177 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTSS---SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCS
T ss_pred HHhhhhhHHHHHHHHHHHHH---hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecC
Confidence 1 11222233434333321 12457999999997742 2345566666533 23456777788
Q ss_pred CCCcCchhHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHhhh-----C
Q psy879 135 NSEKIIEPIQSRCA---MLRYNKLTDAQLLSKVIEICEKENISHTNDG-LEAIVFTAQGDM-RQALNNLQSTHN-----G 204 (317)
Q Consensus 135 ~~~~l~~~i~sR~~---~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~gd~-r~~i~~l~~~~~-----~ 204 (317)
.++.+++++.+++. .+.+++|+.++..+++...++ ++.+++++ +..++..+.|.. +.+.+.+..++. +
T Consensus 178 ~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~ 255 (499)
T 2dhr_A 178 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 255 (499)
T ss_dssp CGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred ChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 88889999998544 399999999999999877654 44555444 778888888876 666677665432 2
Q ss_pred CCcccHHHHHhhc
Q psy879 205 FGHVTAEYVFKVC 217 (317)
Q Consensus 205 ~~~i~~~~v~~~~ 217 (317)
...|+.+++..++
T Consensus 256 ~~~It~~dl~~al 268 (499)
T 2dhr_A 256 RRKITMKDLEEAA 268 (499)
T ss_dssp CSSCCSHHHHHHH
T ss_pred CCccCHHHHHHHH
Confidence 3578888876644
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=2.8e-17 Score=161.21 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=135.6
Q ss_pred CcccCCHHHHHHHHHHHhcC--------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH--
Q psy879 10 SDIVGNEDTVERLKVFSSSG--------NV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV-- 78 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i-- 78 (317)
++++|++.+++.+...+... ++ .+++|+||||||||++|+++++.+.+. ...++.++++........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTCCSSGGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhccchhHHHH
Confidence 46899999999888777542 12 359999999999999999999998543 234666666532211000
Q ss_pred --------------HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCceEEEEe
Q psy879 79 --------------RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS-----------NTTRFALAC 133 (317)
Q Consensus 79 --------------~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~il~~ 133 (317)
......+.. ..+.||+|||++.+.++.++.|+++|++.. .++++|++|
T Consensus 636 l~g~~~~~~G~~~~g~l~~~~~~-------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQLTEAVRR-------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp C--------------CHHHHHHH-------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HcCCCCCCcCccccchHHHHHHh-------CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 001111111 246899999999999999999999999653 367799999
Q ss_pred cCC--------------------------CcCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHH-------c--CCCCCH
Q psy879 134 NNS--------------------------EKIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEK-------E--NISHTN 177 (317)
Q Consensus 134 ~~~--------------------------~~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~-------~--~~~i~~ 177 (317)
|.. ..+.+.+.+|+ ..+.|.|++.+++..++...+.. . .+.+++
T Consensus 709 n~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~ 788 (854)
T 1qvr_A 709 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTE 788 (854)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECH
T ss_pred CcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 862 24678899999 55999999999999998876652 1 346899
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHhh
Q psy879 178 DGLEAIVFTAQ---GDMRQALNNLQSTH 202 (317)
Q Consensus 178 ~~~~~l~~~~~---gd~r~~i~~l~~~~ 202 (317)
++++.++..+. |++|.+.+.++.+.
T Consensus 789 ~a~~~L~~~~~~~~gn~R~L~~~i~~~~ 816 (854)
T 1qvr_A 789 AAKDFLAERGYDPVFGARPLRRVIQREL 816 (854)
T ss_dssp HHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence 99999998754 89999999887753
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.69 E-value=1.1e-15 Score=130.78 Aligned_cols=203 Identities=18% Similarity=0.186 Sum_probs=129.7
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSSS-----------GNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND 72 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 72 (317)
.+.+|++++|++++++.+...... -.. ++++|+||||+||||++++++..+. ..++.+++.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 109 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHH
Confidence 345799999999988877655431 122 2499999999999999999999863 23444443210
Q ss_pred --cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCC-----------HHHH---HHHHHHhhhc--cCCceEEEEec
Q psy879 73 --RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT-----------DGAQ---QALRRTMEIY--SNTTRFALACN 134 (317)
Q Consensus 73 --~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-----------~~~~---~~ll~~le~~--~~~~~~il~~~ 134 (317)
.........+....+.... ..+.++++||+|.+. .... +.++..+... ....+++.++|
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES
T ss_pred HHHHhhHHHHHHHHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC
Confidence 0111122223333333211 245799999998652 1122 3333334322 22345666788
Q ss_pred CCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHhhh-----C
Q psy879 135 NSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDG-LEAIVFTAQGDM-RQALNNLQSTHN-----G 204 (317)
Q Consensus 135 ~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~gd~-r~~i~~l~~~~~-----~ 204 (317)
.++.+++++.+ |+.. +.|++|+.++..+++...++ +..++++. +..++..+.|.. +.+.+.++.++. +
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 264 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999988 4443 99999999999999987764 34454443 778889988866 555566654332 3
Q ss_pred CCcccHHHHHhhc
Q psy879 205 FGHVTAEYVFKVC 217 (317)
Q Consensus 205 ~~~i~~~~v~~~~ 217 (317)
...|+.+++.+++
T Consensus 265 ~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 RRKITMKDLEEAA 277 (278)
T ss_dssp CCSBCHHHHHHHT
T ss_pred CCCcCHHHHHHHh
Confidence 4578888887654
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.67 E-value=1.7e-15 Score=138.75 Aligned_cols=198 Identities=17% Similarity=0.141 Sum_probs=131.8
Q ss_pred CcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHH--------
Q psy879 10 SDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK-------- 81 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-------- 81 (317)
..++|++++++.+..++..+. |++|+||||||||++|+++++.+.. ...+...++.. .....+...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~---~~~f~~~~~~~-~t~~dL~G~~~~~~~~~ 95 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQN---ARAFEYLMTRF-STPEEVFGPLSIQALKD 95 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSS---CCEEEEECCTT-CCHHHHHCCBC------
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhh---hhHHHHHHHhc-CCHHHhcCcccHHHHhh
Confidence 357899999999988888877 8999999999999999999997622 11223333321 122221110
Q ss_pred HHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhcc----------CCceEEEEecCCC---cCchhHhhhcc
Q psy879 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS----------NTTRFALACNNSE---KIIEPIQSRCA 148 (317)
Q Consensus 82 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~----------~~~~~il~~~~~~---~l~~~i~sR~~ 148 (317)
-+.+.. ....+.....|++|||++.+.++.+++|+..|++.. +...+|++||+.. .+.+++.+|+.
T Consensus 96 ~g~~~~-~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~ 174 (500)
T 3nbx_X 96 EGRYER-LTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML 174 (500)
T ss_dssp ----CB-CCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCC
T ss_pred chhHHh-hhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHH
Confidence 011100 000000145699999999999999999999998421 1223577887633 35679999986
Q ss_pred e-eeecCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHhc----------CCCHHH
Q psy879 149 M-LRYNKLTD-AQLLSKVIEIC-----------------------EKENISHTNDGLEAIVFTA----------QGDMRQ 193 (317)
Q Consensus 149 ~-i~f~~~~~-~~~~~~l~~~~-----------------------~~~~~~i~~~~~~~l~~~~----------~gd~r~ 193 (317)
. +.+++|++ ++...++.... ...++.+++++.++++... +.+.|.
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~ 254 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRR 254 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhH
Confidence 6 88888887 55666665432 1236778899988888665 568888
Q ss_pred HHHHHHHh---h--hCCCcccHHHHH
Q psy879 194 ALNNLQST---H--NGFGHVTAEYVF 214 (317)
Q Consensus 194 ~i~~l~~~---~--~~~~~i~~~~v~ 214 (317)
.+..+..+ + .+...++.+++.
T Consensus 255 ~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 255 WKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHHHhhcCCccccchHHH
Confidence 77776542 2 256688999887
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=6.9e-17 Score=143.60 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=131.1
Q ss_pred ccCCHHHHHHHHHHHh-------------cC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChH
Q psy879 12 IVGNEDTVERLKVFSS-------------SG--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76 (317)
Q Consensus 12 ~~g~~~~~~~l~~~l~-------------~~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 76 (317)
++||+.+++.+..++. .. ...+++|+||||||||++|+++++.+ +.+++.+++.......
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l~~~~ 91 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTLTEAG 91 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHHTTCH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHhcccc
Confidence 6899999999888772 11 22359999999999999999999986 3446666654321110
Q ss_pred ----HHHHHHHHHHhhc-ccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhhc--------------
Q psy879 77 ----TVRNKIKMFAQQK-VTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEIY-------------- 123 (317)
Q Consensus 77 ----~i~~~~~~~~~~~-~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~~-------------- 123 (317)
.....+....... .......+.+++|||+|.+... .++.|++.|+..
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 92 YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 1111122111111 0000134679999999988765 899999999921
Q ss_pred -------cCCceEEEEecCC----------Cc-----------------------------------CchhHhhhcce-e
Q psy879 124 -------SNTTRFALACNNS----------EK-----------------------------------IIEPIQSRCAM-L 150 (317)
Q Consensus 124 -------~~~~~~il~~~~~----------~~-----------------------------------l~~~i~sR~~~-i 150 (317)
..+..||++++.. .+ +.+.+.+|+.. +
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~ 251 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVA 251 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeee
Confidence 1334455655532 11 68999999998 6
Q ss_pred eecCCCHHHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHh---cCCCHHHHHHHHHHhhh-------CC-C
Q psy879 151 RYNKLTDAQLLSKVIE----IC-------EKEN--ISHTNDGLEAIVFT---AQGDMRQALNNLQSTHN-------GF-G 206 (317)
Q Consensus 151 ~f~~~~~~~~~~~l~~----~~-------~~~~--~~i~~~~~~~l~~~---~~gd~r~~i~~l~~~~~-------~~-~ 206 (317)
.|.|++.+++.+++.. .+ ...+ +.+++++++.++.. ..++.|.+-+.++.+.. .. .
T Consensus 252 ~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~ 331 (363)
T 3hws_A 252 TLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED 331 (363)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCC
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccC
Confidence 6999999998888765 22 2123 35789999999864 46667777777766443 11 1
Q ss_pred ----cccHHHHHhhcC
Q psy879 207 ----HVTAEYVFKVCD 218 (317)
Q Consensus 207 ----~i~~~~v~~~~~ 218 (317)
.|+.++|.+...
T Consensus 332 ~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 332 VEKVVIDESVIDGQSE 347 (363)
T ss_dssp SEEEECHHHHTTCCSC
T ss_pred CceeEEcHHHHhCcCC
Confidence 366677665443
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.65 E-value=1.3e-15 Score=145.96 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=121.2
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND- 72 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~- 72 (317)
-+|+|+.|.+++++.|+.++.- | .+| ++|||||||||||++|+++|+++ +..++.+++.+.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~l~ 275 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIM 275 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHHhh
Confidence 4699999999888888776531 2 233 49999999999999999999985 344666665321
Q ss_pred ---c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhcc--CCceEEEEec
Q psy879 73 ---R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIYS--NTTRFALACN 134 (317)
Q Consensus 73 ---~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~~--~~~~~il~~~ 134 (317)
. +...++..+..... ..+.||+|||+|.+.+ ...+.|+..|+... .++.+|.+||
T Consensus 276 sk~~gese~~lr~lF~~A~~-------~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEK-------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTT-------SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred cccchHHHHHHHHHHHHHHH-------cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 1 12234444333221 4578999999999853 23567777777543 4567888999
Q ss_pred CCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q psy879 135 NSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQG 189 (317)
Q Consensus 135 ~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 189 (317)
.++.+++++++ ||.. ++++.|+.++...+++..++..... ++..+..++..+.|
T Consensus 349 ~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHG 405 (806)
T ss_dssp STTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCS
T ss_pred ChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCC
Confidence 99999999998 7776 9999999999999998766543221 22336777877654
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.63 E-value=1.2e-14 Score=125.14 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=95.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC----c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND----R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEAD 106 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d 106 (317)
.++||||||||||++|+++|+.+ +..++.++++.. . ....+++.+....... ....+.|++|||+|
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~---~~~~~~vl~iDEiD 109 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAEII---RKGNMCCLFINDLD 109 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHH---TTSSCCCEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHH---hcCCCeEEEEechh
Confidence 49999999999999999999997 234555554321 1 1122333333332110 02467899999999
Q ss_pred CCCHH-------------HHHHHHHHhhh-------------ccCCceEEEEecCCCcCchhHhh--hcceeeecCCCHH
Q psy879 107 SMTDG-------------AQQALRRTMEI-------------YSNTTRFALACNNSEKIIEPIQS--RCAMLRYNKLTDA 158 (317)
Q Consensus 107 ~l~~~-------------~~~~ll~~le~-------------~~~~~~~il~~~~~~~l~~~i~s--R~~~i~f~~~~~~ 158 (317)
.+.+. .++.|+..++. ...++.+|+|||.++.+++++++ |+..+.+ .|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~~~ 188 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 188 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCCHH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcCHH
Confidence 88652 34788888862 23467899999999999999986 6655334 46999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHh-cCCCHH
Q psy879 159 QLLSKVIEICEKENISHTNDGLEAIVFT-AQGDMR 192 (317)
Q Consensus 159 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~-~~gd~r 192 (317)
+..+++...+...++ +.+.+..+... ++.++.
T Consensus 189 ~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 189 DRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHHhccCCCC--CHHHHHHHhCCCCcccHH
Confidence 999999988876654 45555555544 445553
No 77
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.63 E-value=4.7e-15 Score=133.05 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=87.3
Q ss_pred eeEEEEeCCCCCCHH------------HHHHHHHHhhhc----------cCCceEEEEe----cCCCcCchhHhhhcce-
Q psy879 97 HKIVILDEADSMTDG------------AQQALRRTMEIY----------SNTTRFALAC----NNSEKIIEPIQSRCAM- 149 (317)
Q Consensus 97 ~~vliiDE~d~l~~~------------~~~~ll~~le~~----------~~~~~~il~~----~~~~~l~~~i~sR~~~- 149 (317)
..++++||+|++... .|++|++.+|.. ..++.||+++ +++..+.|.+++|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 568999999998532 578999999941 3456677776 2445577999999998
Q ss_pred eeecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHh--------cCCCHHHHHHHHHHhhh-----
Q psy879 150 LRYNKLTDAQLLSKVIE-----------ICEKEN--ISHTNDGLEAIVFT--------AQGDMRQALNNLQSTHN----- 203 (317)
Q Consensus 150 i~f~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~--------~~gd~r~~i~~l~~~~~----- 203 (317)
+.|++|+.+++.+++.. .+..++ +.++++++..+++. -++..|.+.+.++++..
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 99999999999999841 222234 35789999999875 34667777777765432
Q ss_pred --C--CC--cccHHHHHhhcCC
Q psy879 204 --G--FG--HVTAEYVFKVCDE 219 (317)
Q Consensus 204 --~--~~--~i~~~~v~~~~~~ 219 (317)
+ .. .|+.+.|.+.++.
T Consensus 411 ~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 411 ASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp GGGCTTCEEEECHHHHHHHHTT
T ss_pred ccccCCCeEEEeHHHHHHhcCc
Confidence 1 11 3677777665544
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.62 E-value=1e-15 Score=146.50 Aligned_cols=179 Identities=19% Similarity=0.238 Sum_probs=113.7
Q ss_pred CCCCcccCCHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC--
Q psy879 7 QTFSDIVGNEDTVERLKVFSSS-----------G-NVP-NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-- 71 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-- 71 (317)
.+|+++.|.+++++.|...+.- | .++ .+|||||||||||.+|+++|.++ +.+++.+..+.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELL 548 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchhh
Confidence 3589999999999998877531 2 222 39999999999999999999985 33455554322
Q ss_pred ----CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--------------HHHHHHHHhhhcc--CCceEEE
Q psy879 72 ----DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--------------AQQALRRTMEIYS--NTTRFAL 131 (317)
Q Consensus 72 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--------------~~~~ll~~le~~~--~~~~~il 131 (317)
..+...+++.+..... ..+.||+|||+|.+... ..+.|+..|+... ..+.+|.
T Consensus 549 s~~vGese~~vr~lF~~Ar~-------~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQ-------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHT-------TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred ccccchHHHHHHHHHHHHHH-------cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 2234456666655433 35789999999988532 2567888888543 3456777
Q ss_pred EecCCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh----cCCCHHHHHHHH
Q psy879 132 ACNNSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT----AQGDMRQALNNL 198 (317)
Q Consensus 132 ~~~~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----~~gd~r~~i~~l 198 (317)
+||.++.+++++.+ |+.. ++|+.|+.++..++++..+++..+. ++..++.+++. ++.|+..+.+..
T Consensus 622 aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp C-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHH
T ss_pred eCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 89999999999998 8876 9999999999999988776543322 12234555554 556777665544
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.62 E-value=2.9e-15 Score=115.34 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=91.7
Q ss_pred cccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh
Q psy879 11 DIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ 88 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 88 (317)
+++|+...++.+...++. ....+++|+||||||||++|+++++.... .+.+++ +++............+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~--~~~~~v-~~~~~~~~~~~~~~~~~~---- 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN--AQGEFV-YRELTPDNAPQLNDFIAL---- 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT--TTSCCE-EEECCTTTSSCHHHHHHH----
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc--cCCCEE-EECCCCCcchhhhcHHHH----
Confidence 578988888777766542 23336999999999999999999986422 233455 655432222222222221
Q ss_pred cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC-------cCchhHhhhcce--eeecCC
Q psy879 89 KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE-------KIIEPIQSRCAM--LRYNKL 155 (317)
Q Consensus 89 ~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~-------~l~~~i~sR~~~--i~f~~~ 155 (317)
....+++|||+|.+..+.|..|++.++..+.++.+|++||.+. .+.+.+..|+.. ++++|+
T Consensus 75 ------a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 75 ------AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp ------HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred ------cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 1346899999999999999999999988788889999999752 566777777655 555554
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=8.4e-17 Score=151.10 Aligned_cols=205 Identities=20% Similarity=0.147 Sum_probs=122.9
Q ss_pred CcccCCHHHHHHHHHHHhcCCCc-----------eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHH
Q psy879 10 SDIVGNEDTVERLKVFSSSGNVP-----------NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV 78 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~~~~~-----------~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 78 (317)
..++|++++++.+..++.+|... |+||+||||||||++|+++++.+........ ...++....+ ..+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~-~~~~~~~l~~-~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG-KGSTAAGLTA-AVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT-TCSTTTTSEE-ECS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC-Cccccccccc-eee
Confidence 46789999999888777777422 7999999999999999999987521100000 0001110000 000
Q ss_pred HHHH-HHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCceEEEEecCCC-------
Q psy879 79 RNKI-KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-------------SNTTRFALACNNSE------- 137 (317)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-------------~~~~~~il~~~~~~------- 137 (317)
.+.. +.+...+..+..+.+.+++|||+|.+.++.+++|++.||+. +.++.+|.++|+..
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~ 452 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER 452 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTS
T ss_pred eccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCccc
Confidence 0000 00000000000024579999999999999999999999853 24566888888765
Q ss_pred ------cCchhHhhhcc-eeeecCCCHHHHHHHHHHHHHHc-------------------------CCCCCHHHHHHHHH
Q psy879 138 ------KIIEPIQSRCA-MLRYNKLTDAQLLSKVIEICEKE-------------------------NISHTNDGLEAIVF 185 (317)
Q Consensus 138 ------~l~~~i~sR~~-~i~f~~~~~~~~~~~l~~~~~~~-------------------------~~~i~~~~~~~l~~ 185 (317)
.+.+++.+||. .+.+.+++..+...+.......+ .-.+++++.+.+..
T Consensus 453 ~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~ 532 (595)
T 3f9v_A 453 PVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITD 532 (595)
T ss_dssp CSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHH
T ss_pred CchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 78999999995 45565655555333333333211 11455666666665
Q ss_pred h---------------cCCCHHHHHHHHHHh---hh--CCCcccHHHHHhh
Q psy879 186 T---------------AQGDMRQALNNLQST---HN--GFGHVTAEYVFKV 216 (317)
Q Consensus 186 ~---------------~~gd~r~~i~~l~~~---~~--~~~~i~~~~v~~~ 216 (317)
. .++++|.+.++++.+ +. +...++.+|+..+
T Consensus 533 ~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~A 583 (595)
T 3f9v_A 533 FFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERA 583 (595)
T ss_dssp HHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHH
T ss_pred HHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 4 466777777776542 21 4556788777653
No 81
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.60 E-value=6.6e-14 Score=119.21 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=103.2
Q ss_pred CCCCCcccCCHHHHHHHHHHHh------------cCCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC
Q psy879 6 PQTFSDIVGNEDTVERLKVFSS------------SGNV-PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND 72 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~------------~~~~-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 72 (317)
..+|+++.|.+++++.|...+. +-.+ ++++|+||||||||+++++++..+.. .++.+++...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHH
Confidence 3579999999999998876542 1122 24999999999999999999998522 3555555432
Q ss_pred c--ChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH-----------HHHHHHHHhhhc--cCCceEEEEecCCC
Q psy879 73 R--GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG-----------AQQALRRTMEIY--SNTTRFALACNNSE 137 (317)
Q Consensus 73 ~--~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~-----------~~~~ll~~le~~--~~~~~~il~~~~~~ 137 (317)
. ........+....+.... ..+.++++||+|.+... ..+.++..|... .....++.++|+++
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPD 157 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG
T ss_pred HhhhhhHHHHHHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChh
Confidence 1 222333344444443211 24679999999986421 234555555532 23455677899999
Q ss_pred cCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHH
Q psy879 138 KIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEK 170 (317)
Q Consensus 138 ~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~ 170 (317)
.+++++.+ |+.. +.++.|+.++..++++..++.
T Consensus 158 ~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 158 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 99999987 7766 999999999999999987653
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.54 E-value=1.4e-14 Score=111.21 Aligned_cols=128 Identities=11% Similarity=0.142 Sum_probs=87.5
Q ss_pred cccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh
Q psy879 11 DIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ 88 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 88 (317)
+++|+...++.+...+.. ....+++|+||||||||++|+++++... .++.+++.... .......+. .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~-~~~~~~~~~----~ 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYL-IDMPMELLQ----K 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHH-HHCHHHHHH----H
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCC-hHhhhhHHH----h
Confidence 578998888777766542 2334699999999999999999987641 56777765321 111122211 1
Q ss_pred cccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-cCCceEEEEecCC-Cc----CchhHhhhcce--eeecCC
Q psy879 89 KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY-SNTTRFALACNNS-EK----IIEPIQSRCAM--LRYNKL 155 (317)
Q Consensus 89 ~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-~~~~~~il~~~~~-~~----l~~~i~sR~~~--i~f~~~ 155 (317)
....+++|||+|.+..+.+..|++++++. +.++++|++||.+ .. +.+.+..|+.. +..||+
T Consensus 74 ------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 74 ------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp ------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred ------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 23569999999999999999999999975 3567889988864 22 45667777655 555554
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.50 E-value=9.7e-16 Score=148.77 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=109.4
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC
Q psy879 5 RPQTFSDIVGNEDTVERLKVFSSS-----------G--NVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN 71 (317)
Q Consensus 5 ~P~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 71 (317)
...+|+++.|.+++++.+..++.- + ...+++|+||||||||++++++|..+.. .++.+++..
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~~~ 546 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE 546 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCCSS
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEechH
Confidence 345699999999999999887642 1 1235999999999999999999999732 234444332
Q ss_pred C------cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH--------------HHHHHHHHHhhhc--cCCceE
Q psy879 72 D------RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD--------------GAQQALRRTMEIY--SNTTRF 129 (317)
Q Consensus 72 ~------~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~ll~~le~~--~~~~~~ 129 (317)
. .....++..+...... .+.++++||+|.+.. ...+.|+..|+.. ..++.+
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~-------~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~v 619 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQA-------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHH-------CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred hhhhhcCccHHHHHHHHHHHHhc-------CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEE
Confidence 1 1123344444443322 356999999998631 2356677766643 346778
Q ss_pred EEEecCCCcCchhHhh--hcc-eeeecCCCHHHHHHHHHHHHHH
Q psy879 130 ALACNNSEKIIEPIQS--RCA-MLRYNKLTDAQLLSKVIEICEK 170 (317)
Q Consensus 130 il~~~~~~~l~~~i~s--R~~-~i~f~~~~~~~~~~~l~~~~~~ 170 (317)
|++||.++.+++++.+ ||. .+.|+.|+.++...+++..+++
T Consensus 620 I~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred EEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 8899999999999998 997 4999999999999999887643
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.49 E-value=1.3e-13 Score=133.94 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=122.6
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSS-------------GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA 69 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 69 (317)
.+.+-+|++++|++.+++.+..++.. ....+++|+||||||||+++++++..+ +..++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-----~~~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-----TCEEEEEEH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCcEEEEEc
Confidence 34556799999999988888877653 122359999999999999999999975 233555554
Q ss_pred CCC--cChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-----------HHHHHHHHHhhhc--cCCceEEEEec
Q psy879 70 SND--RGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-----------GAQQALRRTMEIY--SNTTRFALACN 134 (317)
Q Consensus 70 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~ll~~le~~--~~~~~~il~~~ 134 (317)
... .........+....+.+.. ..+.++++||++.+.. ..++.|+..++.. ...+.+|++||
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn 348 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC
Confidence 321 1111222223322222211 2467999999987753 2467788888754 34567888999
Q ss_pred CCCcCchhHhh--hcce-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Q psy879 135 NSEKIIEPIQS--RCAM-LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQ 193 (317)
Q Consensus 135 ~~~~l~~~i~s--R~~~-i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~ 193 (317)
+++.+.+.+++ |+.. +.+..|+.++...++...+....+. ++..+..++..+.|-...
T Consensus 349 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~ 409 (806)
T 1ypw_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGA 409 (806)
T ss_dssp CTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHH
T ss_pred CchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchH
Confidence 99999999987 7755 8999999999999998876543322 223355666666654433
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.48 E-value=7.5e-14 Score=111.44 Aligned_cols=130 Identities=15% Similarity=0.222 Sum_probs=82.3
Q ss_pred cccCCCCCCcccC----CHHHHHHHHHHHhcCCC---ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcC
Q psy879 2 EKYRPQTFSDIVG----NEDTVERLKVFSSSGNV---PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG 74 (317)
Q Consensus 2 ~ky~P~~~~~~~g----~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 74 (317)
+||+|.+|+++++ +.++++.+..++.+-.. .+++|+||+|+||||++++++..+.... +..+..++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~~~~~~~~----- 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIRGYFFDT----- 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CCCCCEEEH-----
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CCeEEEEEH-----
Confidence 6899999999996 45666777777764332 2599999999999999999999874111 111222221
Q ss_pred hHHHHHHHH-HHHhhccc---CCCCceeEEEEeCCC--CCCHHHHHHHHHHhhhcc-CCceEEEEecCCCc
Q psy879 75 IDTVRNKIK-MFAQQKVT---LPPGRHKIVILDEAD--SMTDGAQQALRRTMEIYS-NTTRFALACNNSEK 138 (317)
Q Consensus 75 ~~~i~~~~~-~~~~~~~~---~~~~~~~vliiDE~d--~l~~~~~~~ll~~le~~~-~~~~~il~~~~~~~ 138 (317)
.++.+.+. .+...... .....+.++|+||++ .+.+..+..|..+++... ....+|++||....
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 76 -KDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp -HHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred -HHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 11111111 11100000 000246799999998 567777888888887543 55678888887643
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=5.5e-12 Score=111.02 Aligned_cols=180 Identities=12% Similarity=0.072 Sum_probs=119.9
Q ss_pred CCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc------ChHHH--
Q psy879 7 QTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR------GIDTV-- 78 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~i-- 78 (317)
..-+.++|+++.++.|..++..| +.++++||+|+|||++++.+++.. + ++.+++.... ....+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-P------GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-S------EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-C------cEEEEeecccccccCCCHHHHHH
Confidence 34578999999999999999876 479999999999999999999874 1 2223221100 11111
Q ss_pred ----------------------------------HHHHHHHHhhcccCCCCceeEEEEeCCCCCCH-------HHHHHHH
Q psy879 79 ----------------------------------RNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-------GAQQALR 117 (317)
Q Consensus 79 ----------------------------------~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-------~~~~~ll 117 (317)
.+.+..+.... ...++.+++|||++.+.. +....|.
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLG---EELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHH---HHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHH---hccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 11111110000 001267999999999864 3445555
Q ss_pred HHhhhccCCceEEEEecCCC---------cCchhHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy879 118 RTMEIYSNTTRFALACNNSE---------KIIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTA 187 (317)
Q Consensus 118 ~~le~~~~~~~~il~~~~~~---------~l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 187 (317)
..++.. .+..+|+++.... ....++..|. ..+.+.|++.++..+++...+...+..++++.+..+...+
T Consensus 157 ~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 157 YAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp HHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 555543 4677788775431 1122334454 3699999999999999998887778788899999999999
Q ss_pred CCCHHHHHHHHH
Q psy879 188 QGDMRQALNNLQ 199 (317)
Q Consensus 188 ~gd~r~~i~~l~ 199 (317)
+|++..+.....
T Consensus 236 gG~P~~l~~~~~ 247 (350)
T 2qen_A 236 DGIPGWLVVFGV 247 (350)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999986554443
No 87
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.38 E-value=1.3e-11 Score=109.50 Aligned_cols=189 Identities=15% Similarity=0.197 Sum_probs=127.2
Q ss_pred CcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH-HHHHHHH
Q psy879 10 SDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR-NKIKMFA 86 (317)
Q Consensus 10 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 86 (317)
.+++|+......+...+.. ....+++++|++|+||+.+++++...-. .. .. ++.+||..... ..+. +.++. .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~-r~-~~-fv~vnc~~~~~-~~~~~~lfg~-~ 203 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG-RK-GA-FVDLNCASIPQ-ELAESELFGH-E 203 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC-CC-SC-EEEEESSSSCT-TTHHHHHHEE-C
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc-cc-CC-cEEEEcccCCh-HHHHHHhcCc-c
Confidence 4577876655554443321 1223599999999999999999998742 22 22 78888865322 2222 12211 0
Q ss_pred hhcccC---------CCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC-------CcC
Q psy879 87 QQKVTL---------PPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS-------EKI 139 (317)
Q Consensus 87 ~~~~~~---------~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~-------~~l 139 (317)
...+.. ..+...++++||++.|..+.|..|++++++. +-++++|.+||.. ..+
T Consensus 204 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 204 KGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 001000 0024578999999999999999999999853 2356789998865 256
Q ss_pred chhHhhhcce--eeecCCCH--HHHHHHHHHH----HHHcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHhhh
Q psy879 140 IEPIQSRCAM--LRYNKLTD--AQLLSKVIEI----CEKEN---ISHTNDGLEAIVFTA-QGDMRQALNNLQSTHN 203 (317)
Q Consensus 140 ~~~i~sR~~~--i~f~~~~~--~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~gd~r~~i~~l~~~~~ 203 (317)
-+.+..|+.. +.+||+.+ +++...+... +...+ ..+++++++.+.... .||+|++.|.++.++.
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 7789999887 66888877 5666554443 33333 458999999998875 9999999999998654
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.37 E-value=7e-11 Score=105.49 Aligned_cols=203 Identities=16% Similarity=0.147 Sum_probs=133.7
Q ss_pred CCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHH
Q psy879 9 FSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA 86 (317)
Q Consensus 9 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 86 (317)
+..++|+....+.+...+.. ....+++++|++|+||+++|+++.... .....+++.+++... ....+...+-...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s--~r~~~~fv~v~~~~~-~~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS--DRSKEPFVALNVASI-PRDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS--TTTTSCEEEEETTTS-CHHHHHHHHHCBC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc--CCCCCCeEEEecCCC-CHHHHHHHhcCCC
Confidence 45678876666655544432 122248999999999999999999863 233456788887642 2222222111100
Q ss_pred hhcccC---------CCCceeEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCceEEEEecCC-------CcC
Q psy879 87 QQKVTL---------PPGRHKIVILDEADSMTDGAQQALRRTMEIY-----------SNTTRFALACNNS-------EKI 139 (317)
Q Consensus 87 ~~~~~~---------~~~~~~vliiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~il~~~~~-------~~l 139 (317)
...+.. ..+.+.++++||++.|..+.|..|++++++. +.++++|++||.. ..+
T Consensus 213 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 213 KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred CCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 111100 0134679999999999999999999999863 2367789999874 356
Q ss_pred chhHhhhcce--eeecCCCH--HHHHHHHHH----HHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHhhh--CC
Q psy879 140 IEPIQSRCAM--LRYNKLTD--AQLLSKVIE----ICEKENI---SHTNDGLEAIVFT-AQGDMRQALNNLQSTHN--GF 205 (317)
Q Consensus 140 ~~~i~sR~~~--i~f~~~~~--~~~~~~l~~----~~~~~~~---~i~~~~~~~l~~~-~~gd~r~~i~~l~~~~~--~~ 205 (317)
-+.+-.|+.. +.+||+.+ +++...+.. .+.+.+. .+++++++.+... ..||+|+..+.++.++. ..
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~ 372 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG 372 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 7778778765 66677764 555544443 3333343 3789999988866 48999999999997654 44
Q ss_pred CcccHHHHH
Q psy879 206 GHVTAEYVF 214 (317)
Q Consensus 206 ~~i~~~~v~ 214 (317)
..|+.+++.
T Consensus 373 ~~i~~~~l~ 381 (387)
T 1ny5_A 373 KFIDRGELS 381 (387)
T ss_dssp SEECHHHHH
T ss_pred CcCcHHHCc
Confidence 567776653
No 89
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.36 E-value=6.5e-12 Score=104.88 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCC--ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCC
Q psy879 18 TVERLKVFSSSGNV--PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG 95 (317)
Q Consensus 18 ~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 95 (317)
....+..+++...+ .+++||||||||||++++++|+.+.- +..++..+. .+.... ..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l------~G~vn~~~~-----------~f~l~~----~~ 147 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF------YGCVNWTNE-----------NFPFND----CV 147 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC------EEECCTTCS-----------SCTTGG----GS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc------cceeecccc-----------cccccc----cc
Confidence 34446666665423 25999999999999999999997311 111221110 000010 02
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHHHhh--------hcc-----CCceEEEEecCC-----------CcCchhHhhhcceee
Q psy879 96 RHKIVILDEADSMTDGAQQALRRTME--------IYS-----NTTRFALACNNS-----------EKIIEPIQSRCAMLR 151 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~~~~ll~~le--------~~~-----~~~~~il~~~~~-----------~~l~~~i~sR~~~i~ 151 (317)
.+++++. |...+..+.++.+.++++ ... ..+.+|++||.. +...++|+|||..++
T Consensus 148 ~k~i~l~-Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~ 226 (267)
T 1u0j_A 148 DKMVIWW-EEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFE 226 (267)
T ss_dssp SCSEEEE-CSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEE
T ss_pred ccEEEEe-ccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEE
Confidence 3455554 445556667777888887 322 567799999972 256689999999999
Q ss_pred ec--------CCCHHHHHHHHHHHHHHcCCCCCH
Q psy879 152 YN--------KLTDAQLLSKVIEICEKENISHTN 177 (317)
Q Consensus 152 f~--------~~~~~~~~~~l~~~~~~~~~~i~~ 177 (317)
|+ +++++++..++. ++..+..++++
T Consensus 227 F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~ 259 (267)
T 1u0j_A 227 LTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEH 259 (267)
T ss_dssp CCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCC
T ss_pred CCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCcc
Confidence 99 899999999998 45777766543
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=1.7e-10 Score=101.67 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=114.7
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCC-----cChHHH----
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASND-----RGIDTV---- 78 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-----~~~~~i---- 78 (317)
..+.++|+++.++.|.. +.. +.++++||+|+|||++++.+++.+.. . ++.+++... ......
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL---P--YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC---C--EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC---C--EEEEEchhhccccCCCHHHHHHHH
Confidence 45789999999999998 765 58999999999999999999998632 1 233332210 111111
Q ss_pred HH-------------------------------------------HHHHHHhhcccCCCCceeEEEEeCCCCCCH----H
Q psy879 79 RN-------------------------------------------KIKMFAQQKVTLPPGRHKIVILDEADSMTD----G 111 (317)
Q Consensus 79 ~~-------------------------------------------~~~~~~~~~~~~~~~~~~vliiDE~d~l~~----~ 111 (317)
.+ .+..+... . .++.+++|||++.+.. +
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA----S-KDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT----C-SSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc----C-CCCeEEEEECHHHhhccCchh
Confidence 11 11111100 0 0367899999999864 2
Q ss_pred HHHHHHHHhhhccCCceEEEEecCCCc---------CchhHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy879 112 AQQALRRTMEIYSNTTRFALACNNSEK---------IIEPIQSRC-AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181 (317)
Q Consensus 112 ~~~~ll~~le~~~~~~~~il~~~~~~~---------l~~~i~sR~-~~i~f~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 181 (317)
....|....+.. .+..+|+++..... ...++..|. ..+.+.|++.++..+++...+...+...++. .
T Consensus 157 ~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~ 233 (357)
T 2fna_A 157 LLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--E 233 (357)
T ss_dssp CHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--H
T ss_pred HHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--H
Confidence 344444444443 35778888765321 112344454 5699999999999999998876667666544 7
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q psy879 182 AIVFTAQGDMRQALNNLQS 200 (317)
Q Consensus 182 ~l~~~~~gd~r~~i~~l~~ 200 (317)
.+...++|++.-+......
T Consensus 234 ~i~~~t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 8889999999876555544
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.26 E-value=7.1e-12 Score=101.77 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=73.4
Q ss_pred cccCCCCCCcccCCH----HHHHHHHHHHhcCC----CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc
Q psy879 2 EKYRPQTFSDIVGNE----DTVERLKVFSSSGN----VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73 (317)
Q Consensus 2 ~ky~P~~~~~~~g~~----~~~~~l~~~l~~~~----~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 73 (317)
.+|++.+|+++++.. .+++.+..++.... ..+++|+||+|+|||++++++++.+.... ..+..+++...
T Consensus 17 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~--~~~~~~~~~~~- 93 (202)
T 2w58_A 17 REILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN--VSSLIVYVPEL- 93 (202)
T ss_dssp GGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEEEHHHH-
T ss_pred HHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEhHHH-
Confidence 357889999999743 35566677776542 14799999999999999999999885432 23333332110
Q ss_pred ChHHH---------HHHHHHHHhhcccCCCCceeEEEEeCCCCCCHH--HHHHHH-HHhhhc-cCCceEEEEecCC
Q psy879 74 GIDTV---------RNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG--AQQALR-RTMEIY-SNTTRFALACNNS 136 (317)
Q Consensus 74 ~~~~i---------~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~--~~~~ll-~~le~~-~~~~~~il~~~~~ 136 (317)
...+ ...+..+ ....+++|||++..... .+..++ .+++.. .....+|++||..
T Consensus 94 -~~~~~~~~~~~~~~~~~~~~---------~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 94 -FRELKHSLQDQTMNEKLDYI---------KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp -HHHHHHC---CCCHHHHHHH---------HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred -HHHHHHHhccchHHHHHHHh---------cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 0000 1111111 12359999999775432 344344 455543 4556788888864
No 92
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.25 E-value=7.3e-11 Score=105.46 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=120.9
Q ss_pred cccCCHHHHHHHHHHHhcCC-----CceEEEECCCCCCHHHHHHHH-HHHHcCCCCCCceEEecCCCCcChHH-HHHHHH
Q psy879 11 DIVGNEDTVERLKVFSSSGN-----VPNIIISGPPGVGKTTTILCL-ARILLGPSFKDAVLELNASNDRGIDT-VRNKIK 83 (317)
Q Consensus 11 ~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKt~la~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~ 83 (317)
.++||+.+++.+.-++-+|. -.|+|+.|+||+ ||++++++ ++.+ .. ..+.....+...+... +++.-+
T Consensus 214 pI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR---~~ft~g~~ss~~gLt~s~r~~tG 288 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PR---GVYVDLRRTELTDLTAVLKEDRG 288 (506)
T ss_dssp CSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SS---EEEEEGGGCCHHHHSEEEEESSS
T ss_pred ccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CC---eEEecCCCCCccCceEEEEcCCC
Confidence 38899999988888877763 227999999999 99999999 6643 21 1122111111000000 000000
Q ss_pred HHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhh---------ccCCceEEEEecCCC-----------cCchhH
Q psy879 84 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEI---------YSNTTRFALACNNSE-----------KIIEPI 143 (317)
Q Consensus 84 ~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~---------~~~~~~~il~~~~~~-----------~l~~~i 143 (317)
+...+..+..++..++++||++.+.++.+.+|++.||+ .+..+.+|.++|+.. .+.+++
T Consensus 289 -~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~al 367 (506)
T 3f8t_A 289 -WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDF 367 (506)
T ss_dssp -EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHH
T ss_pred -cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHH
Confidence 11111111114578999999999999999999999995 356677888888753 788999
Q ss_pred hhhcceee--ec-------------CCCHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHh------------------cC
Q psy879 144 QSRCAMLR--YN-------------KLTDAQLLSKVIEICE--KENISHTNDGLEAIVFT------------------AQ 188 (317)
Q Consensus 144 ~sR~~~i~--f~-------------~~~~~~~~~~l~~~~~--~~~~~i~~~~~~~l~~~------------------~~ 188 (317)
.+||..+. .. .++.+++.+++.. ++ .-...+++++.++++.. .+
T Consensus 368 LDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~-ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~g 446 (506)
T 3f8t_A 368 LSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLY-AIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLP 446 (506)
T ss_dssp HTTCSEEEETTC--------------CCHHHHHHHHHH-HHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred hhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHH-HHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 99995522 12 2344555555543 33 12556788877666532 13
Q ss_pred CCHHHHHHHHHHh---h--hCCCcccHHHHHh
Q psy879 189 GDMRQALNNLQST---H--NGFGHVTAEYVFK 215 (317)
Q Consensus 189 gd~r~~i~~l~~~---~--~~~~~i~~~~v~~ 215 (317)
-++|....+++.+ + .+...++.+||..
T Consensus 447 iSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~ 478 (506)
T 3f8t_A 447 VTRRQLESVERLAKAHARMRLSDDVEPEDVDI 478 (506)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHH
Confidence 4567666666432 1 1556777777754
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.24 E-value=2.5e-11 Score=93.48 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=78.5
Q ss_pred CCCcccC--CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHH
Q psy879 8 TFSDIVG--NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF 85 (317)
Q Consensus 8 ~~~~~~g--~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 85 (317)
+|++++. +..+...+... .| ..++|+||+|+|||+++++++..+... +...+.++....... .+
T Consensus 15 ~~~~f~~g~n~~~~~~l~~~--~g--~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~~~~~--------~~ 80 (149)
T 2kjq_A 15 SFDKFLGTENAELVYVLRHK--HG--QFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAASMPLT--------DA 80 (149)
T ss_dssp CCCCCCSCCTHHHHHHCCCC--CC--SEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTTSCCC--------GG
T ss_pred chhhcCcCccHHHHHHHHhc--CC--CEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHHhhHH--------HH
Confidence 4555553 44444444444 33 369999999999999999999987542 333455554332221 00
Q ss_pred HhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccC--CceEEEEecCC-CcC--chhHhhhcce
Q psy879 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSN--TTRFALACNNS-EKI--IEPIQSRCAM 149 (317)
Q Consensus 86 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~--~~~~il~~~~~-~~l--~~~i~sR~~~ 149 (317)
..++.+++|||++.+....+..|+++++.... .+++|++++.+ ..+ .+.+.||+..
T Consensus 81 --------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~ 141 (149)
T 2kjq_A 81 --------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAY 141 (149)
T ss_dssp --------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGG
T ss_pred --------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhc
Confidence 03467999999999988778888888875432 23477788753 322 2999999865
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.24 E-value=2e-11 Score=97.41 Aligned_cols=116 Identities=17% Similarity=0.280 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCc---eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCC
Q psy879 18 TVERLKVFSSSGNVP---NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP 94 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~---~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 94 (317)
.+..+..++++ .| +++||||||||||+++.++++.+.+. +..+..+.. . . +.+ + .
T Consensus 44 f~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g~-----i~~fans~s-~-f--------~l~-~----l 101 (212)
T 1tue_A 44 FLGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQGA-----VISFVNSTS-H-F--------WLE-P----L 101 (212)
T ss_dssp HHHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTCE-----ECCCCCSSS-C-G--------GGG-G----G
T ss_pred HHHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCCC-----eeeEEeccc-h-h--------hhc-c----c
Confidence 34556666653 33 59999999999999999999998532 111111110 0 0 001 1 1
Q ss_pred CceeEEEEeCCCCCCHHH-HHHHHHHhhhcc-------------CCceEEEEecCC---CcCchhHhhhcceeeecCC
Q psy879 95 GRHKIVILDEADSMTDGA-QQALRRTMEIYS-------------NTTRFALACNNS---EKIIEPIQSRCAMLRYNKL 155 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~-~~~ll~~le~~~-------------~~~~~il~~~~~---~~l~~~i~sR~~~i~f~~~ 155 (317)
.+.+++++||++.-..+. ...+..+++..+ ....+|+|||.. +...+.|.||+..+.|+.+
T Consensus 102 ~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 102 TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNA 179 (212)
T ss_dssp TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCC
Confidence 346799999998532222 234455555421 235789999974 4556899999999999844
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.15 E-value=3.5e-10 Score=120.31 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=102.9
Q ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhc-------ccC-C
Q psy879 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQK-------VTL-P 93 (317)
Q Consensus 22 l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~-~ 93 (317)
+..++..++ ++||+||||||||++|+.+.... .+..+..++.+...+...+.+.+....... ... +
T Consensus 1260 l~~~l~~~~--~vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~ 1333 (2695)
T 4akg_A 1260 FYDLLNSKR--GIILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS 1333 (2695)
T ss_dssp HHHHHHHTC--EEEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS
T ss_pred HHHHHHCCC--eEEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC
Confidence 566677776 89999999999999997766543 234566777766666666666655432211 011 1
Q ss_pred CCceeEEEEeCCCCCCH------HHHHHHHHHhhhcc------------CCceEEEEecCC-----CcCchhHhhhccee
Q psy879 94 PGRHKIVILDEADSMTD------GAQQALRRTMEIYS------------NTTRFALACNNS-----EKIIEPIQSRCAML 150 (317)
Q Consensus 94 ~~~~~vliiDE~d~l~~------~~~~~ll~~le~~~------------~~~~~il~~~~~-----~~l~~~i~sR~~~i 150 (317)
.+.+.|++|||++.... ...+.|.+.+|... .++.+|.++|++ ..+.+++.+||.++
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 34567999999876533 35677777777311 246788889987 37999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHH
Q psy879 151 RYNKLTDAQLLSKVIEICEK 170 (317)
Q Consensus 151 ~f~~~~~~~~~~~l~~~~~~ 170 (317)
.++.|+.+++..++..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999888754
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.09 E-value=6.4e-11 Score=102.42 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=70.5
Q ss_pred ccCCCCCCcccCC----HHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHc-CCCCCCceEEecCCCCcC
Q psy879 3 KYRPQTFSDIVGN----EDTVERLKVFSSSG---NVPNIIISGPPGVGKTTTILCLARILL-GPSFKDAVLELNASNDRG 74 (317)
Q Consensus 3 ky~P~~~~~~~g~----~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~ 74 (317)
.+++.+|+++++. ..+.+.+..++.+. ...+++|+||||+|||+++.++++.+. ... ..+..++..
T Consensus 117 ~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~~~---- 190 (308)
T 2qgz_A 117 SYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLHFP---- 190 (308)
T ss_dssp GGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEEHH----
T ss_pred HHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEHH----
Confidence 4567899999963 34555666777653 134699999999999999999999875 332 223333221
Q ss_pred hHHHHHHHHH-HHhh---cccCCCCceeEEEEeCCCCC--CHHHHHHHHH-Hhhhc-cCCceEEEEecCC
Q psy879 75 IDTVRNKIKM-FAQQ---KVTLPPGRHKIVILDEADSM--TDGAQQALRR-TMEIY-SNTTRFALACNNS 136 (317)
Q Consensus 75 ~~~i~~~~~~-~~~~---~~~~~~~~~~vliiDE~d~l--~~~~~~~ll~-~le~~-~~~~~~il~~~~~ 136 (317)
.+...+.. +... ..........+|||||++.. +...++.|+. +++.. .....+|++||.+
T Consensus 191 --~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 191 --SFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp --HHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred --HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 11111100 0000 00000023469999999654 3333443433 66543 3456789999854
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.03 E-value=7.8e-10 Score=101.05 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=81.2
Q ss_pred CcccCCCCCCccc-CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHH
Q psy879 1 IEKYRPQTFSDIV-GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR 79 (317)
Q Consensus 1 ~~ky~P~~~~~~~-g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~ 79 (317)
++||||.+|+++- +|.+++..+...+.++.. ++++.|++|||||+++..++..+..... ..++-+... ......++
T Consensus 15 ~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T-~~Aa~~l~ 91 (459)
T 3upu_A 15 VPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPT-HAAKKILS 91 (459)
T ss_dssp ------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS-HHHHHHHH
T ss_pred ccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCc-HHHHHHHH
Confidence 4799999999998 788888888888887663 7999999999999999999998864432 122222221 11122222
Q ss_pred HHHH-------HHHh-hc------------ccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 80 NKIK-------MFAQ-QK------------VTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 80 ~~~~-------~~~~-~~------------~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
+.++ .+.. .+ .........++||||+..+....+..|++.+. ....++++...
T Consensus 92 ~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~ 164 (459)
T 3upu_A 92 KLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDN 164 (459)
T ss_dssp HHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECT
T ss_pred hhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCH
Confidence 2210 1111 00 00111357899999999999988888888775 55667777654
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.88 E-value=7.1e-08 Score=103.03 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCce
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH 97 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 97 (317)
....+..++..+. ..++.||+|||||++++.+|+.+ +..++.++|+.......+...+....+. +
T Consensus 634 ~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l-----g~~~v~~nc~e~ld~~~lg~~~~g~~~~--------G 698 (2695)
T 4akg_A 634 GFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL-----GRVVVVFNCDDSFDYQVLSRLLVGITQI--------G 698 (2695)
T ss_dssp HHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT-----TCCCEEEETTSSCCHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh-----CCcEEEEECCCCCChhHhhHHHHHHHhc--------C
Confidence 4445666677665 57899999999999999999986 3447788888888877776666555443 3
Q ss_pred eEEEEeCCCCCCHHHHHHHHH-------Hhhh-------------ccCCceEEEEecCC----CcCchhHhhhcceeeec
Q psy879 98 KIVILDEADSMTDGAQQALRR-------TMEI-------------YSNTTRFALACNNS----EKIIEPIQSRCAMLRYN 153 (317)
Q Consensus 98 ~vliiDE~d~l~~~~~~~ll~-------~le~-------------~~~~~~~il~~~~~----~~l~~~i~sR~~~i~f~ 153 (317)
..+++||++.+..+...++.. .+.+ .++++.+++|.|+. ..+++++++||..+.+.
T Consensus 699 aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~ 778 (2695)
T 4akg_A 699 AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMK 778 (2695)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECC
T ss_pred CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEee
Confidence 689999999999988777633 3321 12445566666642 47899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------hc------CCCHHHHHHHHHHh
Q psy879 154 KLTDAQLLSKVIEICEKENISHTNDGLEAIVF-------TA------QGDMRQALNNLQST 201 (317)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~-------~~------~gd~r~~i~~l~~~ 201 (317)
.|+.+.+.+++.... |....+.....++. +. +-.+|.....|..+
T Consensus 779 ~Pd~~~i~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~a 836 (2695)
T 4akg_A 779 SPQSGTIAEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNC 836 (2695)
T ss_dssp CCCHHHHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHH
Confidence 999998888865432 54433444333332 11 23677777666544
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.78 E-value=5.4e-08 Score=104.64 Aligned_cols=142 Identities=21% Similarity=0.278 Sum_probs=101.2
Q ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHh-------hcccCC-
Q psy879 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ-------QKVTLP- 93 (317)
Q Consensus 22 l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~- 93 (317)
+..++..+. ++||+||+|||||.++..+...+ .+..++.++.+.......+.+.+..... .+...+
T Consensus 1297 l~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l----~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~ 1370 (3245)
T 3vkg_A 1297 LHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAF----PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPT 1370 (3245)
T ss_dssp HHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGC----TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEES
T ss_pred HHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhC----CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCC
Confidence 566677776 79999999999998886655543 2334667887777777766666653221 111112
Q ss_pred -CCceeEEEEeCCCCCCH------HHHHHHHHHhhhc------------cCCceEEEEecCC-----CcCchhHhhhcce
Q psy879 94 -PGRHKIVILDEADSMTD------GAQQALRRTMEIY------------SNTTRFALACNNS-----EKIIEPIQSRCAM 149 (317)
Q Consensus 94 -~~~~~vliiDE~d~l~~------~~~~~ll~~le~~------------~~~~~~il~~~~~-----~~l~~~i~sR~~~ 149 (317)
.+++-|++|||++.-.. ...+.|+.+++.. ..++.+|.++|++ ..+.+++.+||.+
T Consensus 1371 ~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1371 QLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI 1450 (3245)
T ss_dssp STTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE
T ss_pred cCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE
Confidence 25567899999987654 3677777888731 1345678888876 3689999999999
Q ss_pred eeecCCCHHHHHHHHHHHHH
Q psy879 150 LRYNKLTDAQLLSKVIEICE 169 (317)
Q Consensus 150 i~f~~~~~~~~~~~l~~~~~ 169 (317)
+.++.|+.+++..+...+..
T Consensus 1451 i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999776654
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.71 E-value=1.2e-07 Score=74.90 Aligned_cols=70 Identities=13% Similarity=0.280 Sum_probs=51.5
Q ss_pred CceeEEEEeCCC---CCCHHHHHHHHHHhhhccCCceEEEEec--CCCcCchhHhhh--cceeeecCCCHHHHHHHHHH
Q psy879 95 GRHKIVILDEAD---SMTDGAQQALRRTMEIYSNTTRFALACN--NSEKIIEPIQSR--CAMLRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 95 ~~~~vliiDE~d---~l~~~~~~~ll~~le~~~~~~~~il~~~--~~~~l~~~i~sR--~~~i~f~~~~~~~~~~~l~~ 166 (317)
.++.++++||++ .+....+..+.+.+++. .+.+|++++ +...+...+.+| +.++++.+.+.+++...+.+
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~ 174 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILS 174 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHH
Confidence 467899999953 45677888999999872 344666664 455778888888 78899888887777665544
No 101
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.68 E-value=3.8e-07 Score=85.96 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=100.6
Q ss_pred CCCCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHc--CCCCCCceEEecCCCCcChHHHHHH
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARILL--GPSFKDAVLELNASNDRGIDTVRNK 81 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (317)
|.....++|++..++.|...+.. +....++++|++|+|||++|..+++... ...+...++.++.... ....+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 66678899999999999999874 3334599999999999999999874310 0111111222222111 11111111
Q ss_pred H----HHHHhhcc---cCC----------------CCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 82 I----KMFAQQKV---TLP----------------PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 82 ~----~~~~~~~~---~~~----------------~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+ ........ ..+ ..++-++|+|+++.. . .++..++...+|+||....-
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCCcHH
Confidence 1 11100000 000 014579999999752 1 22333567778887765431
Q ss_pred CchhHhhhcceeee---cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Q psy879 139 IIEPIQSRCAMLRY---NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN 196 (317)
Q Consensus 139 l~~~i~sR~~~i~f---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~~i~ 196 (317)
..... ...+.+ .+++.++..+.+...+.... .-.++....+++.++|.+-.+..
T Consensus 270 -~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~ 326 (591)
T 1z6t_A 270 -TDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGSPLVVSL 326 (591)
T ss_dssp -GTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTCHHHHHH
T ss_pred -HHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCCcHHHHH
Confidence 11111 223333 48999999999988764311 11245678899999998764443
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.61 E-value=7.1e-08 Score=77.57 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=44.0
Q ss_pred CceeEEEEeCCCCCCHH---H--HHHHHHHhhhc-cCCceEEEEecCCCcCchhHhhhcce-eeecCC
Q psy879 95 GRHKIVILDEADSMTDG---A--QQALRRTMEIY-SNTTRFALACNNSEKIIEPIQSRCAM-LRYNKL 155 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~---~--~~~ll~~le~~-~~~~~~il~~~~~~~l~~~i~sR~~~-i~f~~~ 155 (317)
+...|||||||+.+.+. . ...++..++.. .....+|++++++..+..++++|+.. +++.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 45789999999998321 1 11344555543 33456899999999999999999987 777764
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.49 E-value=2.8e-06 Score=86.63 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=102.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHH--cCCCCCCceEEecCCCCcChH---HH
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSS--GNVPNIIISGPPGVGKTTTILCLARIL--LGPSFKDAVLELNASNDRGID---TV 78 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~---~i 78 (317)
|.....++|++..++.|...+.. +....+.|+|+.|+|||++|..+++.. ....+...++.++........ .+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 55567899999999999998853 333348999999999999999887642 122222233333332211111 11
Q ss_pred HHHHHHHHhhcc-------------------cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 79 RNKIKMFAQQKV-------------------TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 79 ~~~~~~~~~~~~-------------------~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
......+..... .....++-+||+|+++... .++..++...+|+||....-.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------~~~~~~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------VLKAFDNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------HHTTTCSSCEEEEEESSTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------HHHhhcCCCEEEEEcCCHHHH
Confidence 111111111000 0000236699999998531 233345677788888765321
Q ss_pred chhHhhhcceeeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Q psy879 140 IEPIQSRCAMLRYNK-LTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQ 193 (317)
Q Consensus 140 ~~~i~sR~~~i~f~~-~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~gd~r~ 193 (317)
.........+...+ +++++..+.+...+....-. .++....+++.++|-+-.
T Consensus 271 -~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLa 323 (1249)
T 3sfz_A 271 -DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLV 323 (1249)
T ss_dssp -TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHH
T ss_pred -HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHH
Confidence 11122234477775 99999998888776432222 235677889999887653
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.47 E-value=5.8e-06 Score=89.38 Aligned_cols=167 Identities=14% Similarity=0.093 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhcccCCCCce
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH 97 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 97 (317)
..-.|..++..+. ...+.||+|||||.+++.+|+.+ +..++-+||+.......+...+....+. +
T Consensus 593 cy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l-----gr~~~vfnC~~~~d~~~~g~i~~G~~~~--------G 657 (3245)
T 3vkg_A 593 CYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL-----GRFVLVFCCDEGFDLQAMSRIFVGLCQC--------G 657 (3245)
T ss_dssp HHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEECSSCCCHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh-----CCeEEEEeCCCCCCHHHHHHHHhhHhhc--------C
Confidence 3445666776655 45789999999999999999997 3446778888777776666655555443 3
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhh-------h--------------ccCCceEEEEecC----CCcCchhHhhhcceeee
Q psy879 98 KIVILDEADSMTDGAQQALRRTME-------I--------------YSNTTRFALACNN----SEKIIEPIQSRCAMLRY 152 (317)
Q Consensus 98 ~vliiDE~d~l~~~~~~~ll~~le-------~--------------~~~~~~~il~~~~----~~~l~~~i~sR~~~i~f 152 (317)
.-.++||++.+..+...++...+. . .++++.+++|.|+ ...+++.+++||..+.+
T Consensus 658 aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m 737 (3245)
T 3vkg_A 658 AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAM 737 (3245)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEEC
T ss_pred cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEE
Confidence 467999999999988776655443 0 1234556666664 24799999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----------hc--CCCHHHHHHHHHHhh
Q psy879 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVF-----------TA--QGDMRQALNNLQSTH 202 (317)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~-----------~~--~gd~r~~i~~l~~~~ 202 (317)
..|+.+.+.+++.. .+|+.-......+++. +. +-.+|.+...|..+.
T Consensus 738 ~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 738 IKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797 (3245)
T ss_dssp CSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Confidence 99999999888654 2355432333333331 11 235887777776554
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.42 E-value=2.3e-07 Score=73.74 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=58.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCC-CCc-ChHHHHHHH------------HHHHhhcccCCCCcee
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS-NDR-GIDTVRNKI------------KMFAQQKVTLPPGRHK 98 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-~~~-~~~~i~~~~------------~~~~~~~~~~~~~~~~ 98 (317)
.++++||+|+||||++..++..+...... ++.+.+. +.+ +...+.... ..+... ...++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~--v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~----~~~~~d 78 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKK--VAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY----IEEDTR 78 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCE--EEEEEEC-----CCCEECC----CEECEEESSGGGGGGG----CCTTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe--EEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH----hcCCCC
Confidence 48899999999999997776655322221 1111110 000 000000000 000000 013578
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC------CcCchhHhhhcce
Q psy879 99 IVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS------EKIIEPIQSRCAM 149 (317)
Q Consensus 99 vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~------~~l~~~i~sR~~~ 149 (317)
+|+|||+..+.++....|..+.+. +..+|+++... ....+.+.+++..
T Consensus 79 vviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~ 132 (184)
T 2orw_A 79 GVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADT 132 (184)
T ss_dssp EEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSE
T ss_pred EEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhh
Confidence 999999999987777777667664 45566665432 2445666777654
No 106
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.42 E-value=2e-06 Score=80.32 Aligned_cols=173 Identities=13% Similarity=0.148 Sum_probs=97.8
Q ss_pred cCCHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHH---HcCCCCCCceEEecCCCCc--ChHHH-HHHHH
Q psy879 13 VGNEDTVERLKVFSSSG---NVPNIIISGPPGVGKTTTILCLARI---LLGPSFKDAVLELNASNDR--GIDTV-RNKIK 83 (317)
Q Consensus 13 ~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~la~~---l~~~~~~~~~~~~~~~~~~--~~~~i-~~~~~ 83 (317)
+|.+..++.|..++..+ ....+.++|+.|+||||+|+.+++. -....+. ....++.+... +...+ ...+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD-SIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS-EEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC-cEEEEEECCCCCCCHHHHHHHHHH
Confidence 49999999998888654 3445999999999999999999972 2222232 22333333221 22221 22222
Q ss_pred HHHhhcc--cC------------------CCCc-eeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchh
Q psy879 84 MFAQQKV--TL------------------PPGR-HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEP 142 (317)
Q Consensus 84 ~~~~~~~--~~------------------~~~~-~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (317)
.+..... .. -.++ +-+||+|+++....- .+. . .+...+|+||.... +...
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~---~~~---~--~~gs~ilvTTR~~~-v~~~ 280 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI---RWA---Q--ELRLRCLVTTRDVE-ISNA 280 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH---HHH---H--HTTCEEEEEESBGG-GGGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh---ccc---c--cCCCEEEEEcCCHH-HHHH
Confidence 2211100 00 0133 678999999883211 111 1 14566777776532 2211
Q ss_pred HhhhcceeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Q psy879 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENI-SHTNDGLEAIVFTAQGDMRQAL 195 (317)
Q Consensus 143 i~sR~~~i~f~~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~l~~~~~gd~r~~i 195 (317)
.......+...+++.++..+.+...+..... .-.++....+++.++|.+-.+.
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 1111245889999999999888886432111 0012356788899999776443
No 107
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.19 E-value=9.9e-06 Score=69.32 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=38.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEe------cCCCCcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLEL------NASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADS 107 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 107 (317)
++|+||||+|||+++..++.. .+ ....++.. +... .+.+.+.+.+...... .. +||||+++.
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~-~G--~~VlyIs~~~eE~v~~~~-~~le~~l~~i~~~l~~-------~~-LLVIDsI~a 193 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA-LG--GKDKYATVRFGEPLSGYN-TDFNVFVDDIARAMLQ-------HR-VIVIDSLKN 193 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH-HH--TTSCCEEEEBSCSSTTCB-CCHHHHHHHHHHHHHH-------CS-EEEEECCTT
T ss_pred EEEEcCCCCCHHHHHHHHHHh-CC--CCEEEEEecchhhhhhhh-cCHHHHHHHHHHHHhh-------CC-EEEEecccc
Confidence 799999999999999999986 22 22334444 2111 2233322222221111 12 999999998
Q ss_pred CCH
Q psy879 108 MTD 110 (317)
Q Consensus 108 l~~ 110 (317)
+..
T Consensus 194 L~~ 196 (331)
T 2vhj_A 194 VIG 196 (331)
T ss_dssp TC-
T ss_pred ccc
Confidence 853
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.16 E-value=4e-06 Score=68.41 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=54.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC--------CCCcC-------hHHHHHHHHHHHhhcccCCCCce
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA--------SNDRG-------IDTVRNKIKMFAQQKVTLPPGRH 97 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~--------~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~ 97 (317)
-++++||+|+||||++..++..+........++.... ....+ .....+.+..+... .....+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~---~~~~~~ 90 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSN---SFNDET 90 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHST---TSCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHH---hhCCCC
Confidence 4899999999999999998887743332222221000 00001 00111222222111 112457
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 98 KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 98 ~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
.+|+|||+..+..+....+..+.+ ....+|++...
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~ 125 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLD 125 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCS
T ss_pred CEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecc
Confidence 899999999998775555544333 25777887763
No 109
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.08 E-value=1.3e-05 Score=63.68 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC-CcChH--------------------------HHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-DRGID--------------------------TVRNKIKM 84 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~--------------------------~i~~~~~~ 84 (317)
..+++|+++|.||||+|-.++-...+.+....++.+.... ..+.. +.......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 3589999999999999999998776555444343322210 00000 01111111
Q ss_pred HHhhcccCCCCceeEEEEeCCCCCCH---HHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 85 FAQQKVTLPPGRHKIVILDEADSMTD---GAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 85 ~~~~~~~~~~~~~~vliiDE~d~l~~---~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+......+..+.+.+||+||+..... -..+.++.++...|....+|+|++...
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 11111122346799999999954211 123457888888889999999998853
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.00 E-value=3.3e-05 Score=61.45 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=43.8
Q ss_pred CceeEEEEeCCCCC---CHHHHHHHHHHhhhccCCceEE--EE-ecCC-CcCchhHhhh--cceeeecCCCHHHHHHHHH
Q psy879 95 GRHKIVILDEADSM---TDGAQQALRRTMEIYSNTTRFA--LA-CNNS-EKIIEPIQSR--CAMLRYNKLTDAQLLSKVI 165 (317)
Q Consensus 95 ~~~~vliiDE~d~l---~~~~~~~ll~~le~~~~~~~~i--l~-~~~~-~~l~~~i~sR--~~~i~f~~~~~~~~~~~l~ 165 (317)
.++.++|+||++.+ ......++.++++.+ .+.++ ++ +++. ..+.+.+..+ +.++.+.+-+.+.+..-+.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~--~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhCC--CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 56789999998776 345677788888753 23333 22 2332 3566777664 4567777766666665554
Q ss_pred H
Q psy879 166 E 166 (317)
Q Consensus 166 ~ 166 (317)
+
T Consensus 182 ~ 182 (189)
T 2i3b_A 182 T 182 (189)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=4.9e-05 Score=57.32 Aligned_cols=122 Identities=6% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCC-ceEEecCCCCcChHHHHHHHHHHHhhcccCCCCceeEEE
Q psy879 23 KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKD-AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVI 101 (317)
Q Consensus 23 ~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vli 101 (317)
...++++-.|.|+|||+.-.-....+..+.+.+...+... .++.++. ... +.+.+......+++ +++++|+
T Consensus 10 ~~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~--~~~---~~~l~~~~~s~slF---~~rrlV~ 81 (140)
T 1jql_B 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--NTD---WNAIFSLCQAMSLF---ASRQTLL 81 (140)
T ss_dssp HHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCST--TCC---HHHHHHHHHCCCTT---CCCEEEE
T ss_pred HHHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecC--CCC---HHHHHHHHhcCCCC---CCCEEEE
Confidence 3444445455699999996556666666666554322111 1222222 123 33444444444433 7899999
Q ss_pred EeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC------cCchhHhhhcceeee
Q psy879 102 LDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE------KIIEPIQSRCAMLRY 152 (317)
Q Consensus 102 iDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~------~l~~~i~sR~~~i~f 152 (317)
|.+++. +.++....|..+++.|++.+++|++....+ ++.+++.+.+..+.|
T Consensus 82 v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 82 LLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp EECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred EECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 999765 666778889999999999999999875432 456666666655544
No 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.98 E-value=7e-05 Score=73.59 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=80.1
Q ss_pred cCCHHHHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHH-cCCCCCCceEEecCCCCcChHHHHHHHHHH-Hh--
Q psy879 13 VGNEDTVERLKVFSSS-GNVPNIIISGPPGVGKTTTILCLARIL-LGPSFKDAVLELNASNDRGIDTVRNKIKMF-AQ-- 87 (317)
Q Consensus 13 ~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-- 87 (317)
+|++..++.|..++.. ...+.+.++|+.|+||||+|+.+++.. ....+...++.++.+.......+...+... ..
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 8999999999988875 334459999999999999999998531 011112212323322222222211111100 00
Q ss_pred -------------------------hcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCCcCchh
Q psy879 88 -------------------------QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEP 142 (317)
Q Consensus 88 -------------------------~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (317)
.......+++-+||+|+++. .+.. +.+ ++...+|+||...... ..
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqL----e~f---~pGSRILVTTRd~~Va-~~ 280 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAW----NAF---NLSCKILLTTRFKQVT-DF 280 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHH----HHH---HSSCCEEEECSCSHHH-HH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHH----Hhh---CCCeEEEEeccChHHH-Hh
Confidence 00000124567999999988 2222 222 3567778877654321 11
Q ss_pred Hhhh-cceeeec----CCCHHHHHHHHHHHH
Q psy879 143 IQSR-CAMLRYN----KLTDAQLLSKVIEIC 168 (317)
Q Consensus 143 i~sR-~~~i~f~----~~~~~~~~~~l~~~~ 168 (317)
+... ...+.++ ++++++..+.+...+
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 1111 1224433 789999999887764
No 113
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.94 E-value=7.8e-06 Score=76.39 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHH-------HHHh
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIK-------MFAQ 87 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~ 87 (317)
.+...+.+...+.+ +.+++.||||||||+++..++..+.... ..+.-..+ +......+.+.++ .+..
T Consensus 191 ~~~Q~~Av~~~~~~---~~~~I~G~pGTGKTt~i~~l~~~l~~~g--~~Vl~~Ap-T~~Aa~~L~e~~~~~a~Tih~ll~ 264 (574)
T 3e1s_A 191 SEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLG--LEVGLCAP-TGKAARRLGEVTGRTASTVHRLLG 264 (574)
T ss_dssp CHHHHHHHHHHTTC---SEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEES-SHHHHHHHHHHHTSCEEEHHHHTT
T ss_pred CHHHHHHHHHHHhC---CEEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEecC-cHHHHHHhHhhhcccHHHHHHHHc
Confidence 34555555555532 3699999999999999999998875432 22332322 2222222222111 1100
Q ss_pred h-c--c---cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 88 Q-K--V---TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 88 ~-~--~---~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
. + + ........+|||||+..+.......|++.+ +....+|++....
T Consensus 265 ~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~ 316 (574)
T 3e1s_A 265 YGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTD 316 (574)
T ss_dssp EETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTT
T ss_pred CCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEeccc
Confidence 0 0 0 001125679999999999988777776655 3667788887653
No 114
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.94 E-value=2.4e-06 Score=73.25 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=30.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++|+||+-. |.......+.+.+.+......+|++|++..
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 578999999975 566667777777766544556777787643
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.94 E-value=3.2e-05 Score=80.76 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
+++|+||||||||++|.+++.+....
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 59999999999999999999886443
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.91 E-value=4e-05 Score=62.72 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++++||+|+||||+++.++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999997653
No 117
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.88 E-value=8.3e-06 Score=67.87 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=31.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+.+.+......+|++|++..
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 678999999975 566777777777766544566777887754
No 118
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.84 E-value=9.2e-05 Score=62.04 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+-+++++--. .+++.+. +..|. .+++.||+|+||||+++.++..+.
T Consensus 5 ~~~l~~l~~~-~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 5 IPEFKKLGLP-DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp -CCGGGSSCC-THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCChHHCCCH-HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCC
Confidence 3345554333 4555554 44443 599999999999999999999864
No 119
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.83 E-value=6.9e-05 Score=60.79 Aligned_cols=128 Identities=18% Similarity=0.230 Sum_probs=74.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhhc-------------ccC---CCCc
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQK-------------VTL---PPGR 96 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~---~~~~ 96 (317)
++++.|++|+||||++..++..+...+....+..+++... ... ...+......+ ... -...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~--~~~-~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~ 84 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR--AET-EALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAA 84 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC--HHH-HHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC--hhH-HHHhcCccccCcceeecCCcccccccHHHHHhcC
Confidence 4999999999999999999988754433333344433211 110 00111000000 000 0024
Q ss_pred eeEEEEeCCCCCCHH------HHHHHHHHhhhccCCceEEEEecCC------------------CcCchhHhhhcceeee
Q psy879 97 HKIVILDEADSMTDG------AQQALRRTMEIYSNTTRFALACNNS------------------EKIIEPIQSRCAMLRY 152 (317)
Q Consensus 97 ~~vliiDE~d~l~~~------~~~~ll~~le~~~~~~~~il~~~~~------------------~~l~~~i~sR~~~i~f 152 (317)
+.++||||+...... ....+.. ..+...-++.++|-. +.++..+..++..+.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~---~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~l 161 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQE---LLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVL 161 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHH---HHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEE
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHH---HHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEE
Confidence 679999998875221 1222222 334555677777622 2467788888888888
Q ss_pred cCCCHHHHHHHHHH
Q psy879 153 NKLTDAQLLSKVIE 166 (317)
Q Consensus 153 ~~~~~~~~~~~l~~ 166 (317)
-..+++++.+.+..
T Consensus 162 vD~~p~~l~~rl~~ 175 (228)
T 2r8r_A 162 IDLPPRELLERLRD 175 (228)
T ss_dssp BCCCHHHHHHHHHT
T ss_pred ecCCHHHHHHHHHC
Confidence 88899988887655
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.83 E-value=0.00014 Score=58.86 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.++++||||+||||+++.++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999998
No 121
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.81 E-value=0.0001 Score=69.47 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=57.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC--CCCCceEEecCCCCcChHHHHHHHHHHHh-----------------h--cc-
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP--SFKDAVLELNASNDRGIDTVRNKIKMFAQ-----------------Q--KV- 90 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~--~~- 90 (317)
.++++|+||||||+++..+...+... ..+..+.-..+ +..-...+.+.+..... + ..
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP-Tg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP-TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS-SHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC-ChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 69999999999999999888776421 11222332222 22222333333222100 0 00
Q ss_pred ------------cCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCC
Q psy879 91 ------------TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 91 ------------~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
........++||||++.+.......|++.+ +....+|++....
T Consensus 245 ~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~ 299 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRD 299 (608)
T ss_dssp -----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTT
T ss_pred ccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchh
Confidence 000014569999999988876666665544 5677888887653
No 122
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.78 E-value=1.7e-05 Score=65.43 Aligned_cols=42 Identities=5% Similarity=0.174 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.-. |.+.....+.+.+.+... ...+|++|++.+
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 689999999985 567778888888876532 456788888754
No 123
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.78 E-value=0.00034 Score=60.64 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+.+.+.-.+..|. .+++.||+|+||||++++++..+.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCc
Confidence 5667777787787 799999999999999999998763
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.77 E-value=8.6e-05 Score=57.98 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=16.2
Q ss_pred eEEEECCCCCCHHHHHH
Q psy879 33 NIIISGPPGVGKTTTIL 49 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~ 49 (317)
.+.+.||+|+||||+++
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999999
No 125
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.75 E-value=9.8e-06 Score=68.44 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~~~ 138 (317)
+++++|+||.-. |.+..+..+.+.+.+.. ....+|++|++.+.
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 689999999975 67777788888776543 24567788877554
No 126
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.75 E-value=1.7e-05 Score=69.43 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=30.8
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~ 136 (317)
+++++++||.-. |.+..+..+++++.+.. ....+|++|++.
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 689999999975 56777888888877653 245678888764
No 127
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.74 E-value=0.0003 Score=61.57 Aligned_cols=114 Identities=14% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecC-CC-------------
Q psy879 6 PQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNA-SN------------- 71 (317)
Q Consensus 6 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~-~~------------- 71 (317)
+.+++++...+ ++..+ ....+. .+++.||+|+||||+.++++..+...... .++.+.. ..
T Consensus 103 ~~~l~~lg~~~-~l~~l--~~~~~g--~i~I~GptGSGKTTlL~~l~g~~~~~~~~-~i~t~ed~~e~~~~~~~~~v~q~ 176 (356)
T 3jvv_A 103 VLTMEELGMGE-VFKRV--SDVPRG--LVLVTGPTGSGKSTTLAAMLDYLNNTKYH-HILTIEDPIEFVHESKKCLVNQR 176 (356)
T ss_dssp CCCTTTTTCCH-HHHHH--HHCSSE--EEEEECSTTSCHHHHHHHHHHHHHHHCCC-EEEEEESSCCSCCCCSSSEEEEE
T ss_pred CCCHHHcCChH-HHHHH--HhCCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCc-EEEEccCcHHhhhhccccceeee
Confidence 34577765544 33333 222232 69999999999999999999987432111 1111100 00
Q ss_pred --CcChHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 72 --DRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 72 --~~~~~~i~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
......+.+.+.... ..++.++++||+- ..+....+++..+. +.+ ++++++..+
T Consensus 177 ~~~~~~~~~~~~La~aL-------~~~PdvillDEp~--d~e~~~~~~~~~~~--G~~-vl~t~H~~~ 232 (356)
T 3jvv_A 177 EVHRDTLGFSEALRSAL-------REDPDIILVGEMR--DLETIRLALTAAET--GHL-VFGTLHTTS 232 (356)
T ss_dssp EBTTTBSCHHHHHHHHT-------TSCCSEEEESCCC--SHHHHHHHHHHHHT--TCE-EEEEESCSS
T ss_pred eeccccCCHHHHHHHHh-------hhCcCEEecCCCC--CHHHHHHHHHHHhc--CCE-EEEEEccCh
Confidence 000111222222221 1468899999997 45555666666543 333 566666544
No 128
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.72 E-value=2.2e-05 Score=66.20 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=31.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||... |.......+.+.+.+... ...+|++|++..
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 689999999975 567788888888877643 556777887643
No 129
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.72 E-value=0.0013 Score=53.28 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCCCcccCCHHHHHHHHHH---------------HhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKVF---------------SSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+|+++--.+.+.+.+... +.+|+ ++++.+|+|+|||.++...+-..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCchhhhhhHHHHHh
Confidence 4577776667766665542 22343 69999999999998876666544
No 130
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.70 E-value=0.00011 Score=64.21 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++++||||+||||++..++..+.
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999997764
No 131
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.70 E-value=2e-05 Score=65.82 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=30.1
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
+++++++||.. .|.+.....+.+++.+.. ....+|++|++.
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 68999999998 467777777877776553 345677777764
No 132
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.69 E-value=3.1e-05 Score=63.39 Aligned_cols=41 Identities=7% Similarity=0.149 Sum_probs=30.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
+++++++||... |.+.....+.+++.+.. ....+|++|++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 688999999985 67777888877776543 245677777764
No 133
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.69 E-value=1.8e-05 Score=74.53 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+++++++||+-. +.+.....+.+.+.+......+|++|++...
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 689999999975 5666677777777665455667888887653
No 134
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.69 E-value=4.9e-05 Score=71.31 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=31.1
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+-. +.+.....+.+.+.+......+|+++++..
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 689999999975 566677777777776554556777887753
No 135
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.68 E-value=1.8e-05 Score=66.50 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=30.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~ 136 (317)
+++++++||.-. |.+..+..+.+.+.+.. ....+|++|++.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH
Confidence 789999999975 66777888888877653 234577777764
No 136
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.67 E-value=0.00017 Score=58.06 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCC-C-cChHHHHHHHHHHHh--------hcccCCCCceeEEEEe
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASN-D-RGIDTVRNKIKMFAQ--------QKVTLPPGRHKIVILD 103 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~--------~~~~~~~~~~~vliiD 103 (317)
++++||.|+||||.+...+......... ++-+.+.. . .+...+...++.-.. .-.....+.+.+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~k--Vli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQH--AIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCC--EEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCE--EEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEE
Confidence 7899999999999998888776443332 22222221 1 111122222211000 0000011247899999
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 104 EADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 104 E~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
|+..++++..+.+..+.+ .+..+|++.-+
T Consensus 109 EaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 109 EVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp CGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred CcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 999998776644433332 36677777654
No 137
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.66 E-value=0.00038 Score=56.61 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=30.5
Q ss_pred CCCCcccCCHHHHHHHHHH---------------HhcCCCceEEEECCCCCCHHHH-HHHHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKVF---------------SSSGNVPNIIISGPPGVGKTTT-ILCLARIL 55 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~l-a~~la~~l 55 (317)
.+|+++--.+.+.+.+... +.+|+ ++++.+|+|+|||.+ +..+...+
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH--DVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC--CEEEECCCCCcHHHHHHHHHHHHH
Confidence 3477766566666655432 23343 699999999999987 44444444
No 138
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.66 E-value=2.3e-05 Score=65.23 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=28.0
Q ss_pred EEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 99 IVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 99 vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
++++||... |....+..+.+.+.+.. ....+|++|++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999975 67777888888877653 345577777663
No 139
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.64 E-value=0.0016 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.63 E-value=0.00046 Score=56.77 Aligned_cols=23 Identities=26% Similarity=0.081 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|+||||+||||+++.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999999863
No 141
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=9.5e-05 Score=61.25 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.+.|.||+|+||||+++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 599999999999999999994
No 142
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.62 E-value=0.00042 Score=60.49 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCc---eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 21 RLKVFSSSGNVP---NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 21 ~l~~~l~~~~~~---~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.|...+..|.++ .++|+||||+||||++..++..+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355555413332 289999999999999999998764
No 143
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.62 E-value=0.00048 Score=56.78 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+...+.+..++..+ +.+++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 444455555555432 59999999999999999888774
No 144
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.62 E-value=1.5e-05 Score=74.73 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=31.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+++++++||+-. +.+.....+.+.+.+......+|++|++.+.
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 578999999975 5666677777777665555567778887654
No 145
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.61 E-value=0.0001 Score=65.05 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++++||||+||||+++.++..+.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 599999999999999999999763
No 146
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.61 E-value=2.8e-05 Score=65.17 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
+++++++||.-. |.+..+..+.+++.+.. ....+|++|++.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 689999999975 56777777777776543 245677777663
No 147
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.60 E-value=5.7e-05 Score=60.08 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=50.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEE--ecCC-------CCcC-------hHHHHHHHHHHHhhcccCCCCc
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLE--LNAS-------NDRG-------IDTVRNKIKMFAQQKVTLPPGR 96 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~--~~~~-------~~~~-------~~~i~~~~~~~~~~~~~~~~~~ 96 (317)
-++++||.|+||||.+..++...........++. .+.. +..+ .....+.+..+ ...
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~--------~~~ 81 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF--------EED 81 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC--------CTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHH--------hcc
Confidence 4899999999999999988887643322221111 0000 0000 00001111111 124
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 97 ~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
+.+|+|||+..++++....+..+.+ .+..+|+++-+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLD 117 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecc
Confidence 6799999999998776555444333 35667777653
No 148
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.60 E-value=2.7e-05 Score=73.11 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+-. +.+.....+.+.+.+...+..+|++|++..
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 689999999975 566777777777776555666788887754
No 149
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.60 E-value=0.00059 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+.+.++..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999975
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.59 E-value=0.00046 Score=57.71 Aligned_cols=24 Identities=54% Similarity=0.719 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999985
No 151
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.59 E-value=2.5e-05 Score=68.77 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=30.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.-. |.......+++.+.+... .+.+|++|++..
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 589999999974 566667777777765422 466788887754
No 152
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.59 E-value=0.0002 Score=62.72 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++++|+||+|||+++..++..+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998764
No 153
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.58 E-value=3.5e-05 Score=72.32 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+++++++||+.. +.+.....+.+.+.+......+|+++++.+.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 578999999985 5667777777777765445567888877543
No 154
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.58 E-value=2e-05 Score=66.03 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=31.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+++++++||... |.+.....+.+.+.+......+|++|++...
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 578999999975 5667777777777765545667788877553
No 155
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.57 E-value=0.002 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||||+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999886
No 156
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.56 E-value=0.0043 Score=57.28 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=51.2
Q ss_pred eeEEEEeCCCCCCH----HHHHHHHHHhhhc-cCCceEEEEecCCC--cCchhHhhhcce-eeecCCCHHHHHHHHH
Q psy879 97 HKIVILDEADSMTD----GAQQALRRTMEIY-SNTTRFALACNNSE--KIIEPIQSRCAM-LRYNKLTDAQLLSKVI 165 (317)
Q Consensus 97 ~~vliiDE~d~l~~----~~~~~ll~~le~~-~~~~~~il~~~~~~--~l~~~i~sR~~~-i~f~~~~~~~~~~~l~ 165 (317)
+-+|||||+..+.. +....|.++.... .-.+.+|++|..+. .+...+++-|.. +.|..-+..+...+|.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 56899999997743 3445555555543 34566888888886 788889999887 8888888888877764
No 157
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.55 E-value=3.3e-05 Score=63.96 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~ 136 (317)
+++++++||... |.+.....+.+.+.+.. ....+|++|++.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 689999999984 66777888888777553 345577777764
No 158
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.54 E-value=0.00029 Score=57.48 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 399999999999999999998653
No 159
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.53 E-value=2.7e-05 Score=69.02 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=32.0
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||.- .|.......+.+.+.+....+.+|+++++.+
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 68999999986 5677777788887776555566788887754
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.53 E-value=0.00068 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++++||||+|||+++..++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999988876653
No 161
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.53 E-value=9.4e-05 Score=64.20 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+++.+...+..|..++++|.|++|+||||+++.+++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3455566667788888899999999999999999999873
No 162
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.53 E-value=5e-05 Score=66.25 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=30.3
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhcc--CCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYS--NTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~--~~~~~il~~~~~~ 137 (317)
+++++++||.- .|.......+.+.+.+.. ....+|++|++..
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999997 466777777777776543 2456788887643
No 163
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.52 E-value=0.00038 Score=56.53 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=52.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh-cccC------CCCceeEEEEeCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ-KVTL------PPGRHKIVILDEA 105 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~------~~~~~~vliiDE~ 105 (317)
-+++||+.|+||||.+...+...........++........+ ..+...++.-... .... ......+|+|||+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEa 99 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 99 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESSG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEch
Confidence 389999999999988777776654443332222211111112 2222222110000 0000 0034679999999
Q ss_pred CCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 106 DSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 106 d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
..+.+ ...+.+.+.+ ....+|++.-+
T Consensus 100 QF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 100 QFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp GGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred hhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 99974 6677777776 45677887665
No 164
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.52 E-value=0.00032 Score=72.53 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
+++|||||||||++|++++.+-
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 9999999999999999999764
No 165
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.52 E-value=0.00058 Score=54.67 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=25.1
Q ss_pred CceeEEEEeCCCCCCHH-HHHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDG-AQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~-~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
...+++|+||+|.+... ....+..++...+....+++.|..
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 184 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT 184 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSS
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEe
Confidence 45689999999987543 233444555555555555555444
No 166
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.51 E-value=4e-05 Score=66.96 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=29.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.-. |.......+.+.+.+... ...+|++|++.+
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 689999999974 667777777777665422 456777887643
No 167
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.51 E-value=4.3e-05 Score=66.90 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.-. |.......+.+.+.+... ...+|++|++.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 689999999974 666777777777665432 456788887743
No 168
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.51 E-value=0.00084 Score=55.14 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=16.9
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLA 52 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la 52 (317)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 69999999999998766554
No 169
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.50 E-value=0.00064 Score=59.69 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++|+||||+|||+++..++..+.
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHH
Confidence 89999999999999999988764
No 170
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.50 E-value=0.00025 Score=66.60 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
|.+++..+...+.+|. .++++.+|.|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHH
Confidence 4445555555555554 3689999999999999888887764
No 171
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.49 E-value=3.8e-05 Score=78.61 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~ 138 (317)
+++|+|+||+-. +..+....+.+.+++...+..+|+++++...
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 578999999975 4556667777778776666667778877543
No 172
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.49 E-value=0.0009 Score=53.52 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCCH-HHHHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTD-GAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~-~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....++|+||+|.+.. .....+..++...+....+++.|..
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 4568999999997654 2334445555555545555554433
No 173
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.48 E-value=0.0032 Score=57.60 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=47.7
Q ss_pred eEEEEeCCCCCCHHH----HHHHHHHhhhcc-CCceEEEEecCCC--cCchhHhhhcce-eeecCCCHHHHHHHHHH
Q psy879 98 KIVILDEADSMTDGA----QQALRRTMEIYS-NTTRFALACNNSE--KIIEPIQSRCAM-LRYNKLTDAQLLSKVIE 166 (317)
Q Consensus 98 ~vliiDE~d~l~~~~----~~~ll~~le~~~-~~~~~il~~~~~~--~l~~~i~sR~~~-i~f~~~~~~~~~~~l~~ 166 (317)
-+++|||+..+.... .+.+.++..... -.+.+|++|+.+. .+...+++.+.. +.|.--++.+...++..
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 489999997765432 333333333322 2567888888876 577888888876 88888888888877654
No 174
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.48 E-value=4.5e-05 Score=66.83 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.-. |.......+.+.+.+... ...+|++|++..
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 689999999974 666777777777765422 456788887743
No 175
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.44 E-value=5.1e-05 Score=66.75 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=30.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.-. |.......+...+.+... ...+|++|++..
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 689999999974 666777777777765432 456788887743
No 176
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.44 E-value=3.1e-05 Score=64.03 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~ 136 (317)
+++++++||.-. |.+..+..+.+.+.+... ...+|++|++.
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 689999999975 677778888888776532 45577777764
No 177
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.44 E-value=0.0026 Score=57.06 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPS 59 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~ 59 (317)
.+++.|++|+||||++..+|..+....
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 389999999999999999999886543
No 178
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.42 E-value=0.00059 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||||+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999999 553
No 179
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.42 E-value=0.002 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 180
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.41 E-value=6.1e-05 Score=65.82 Aligned_cols=27 Identities=41% Similarity=0.676 Sum_probs=23.0
Q ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 27 SSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 27 ~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..|. .+.|.||+|+||||+.+.++..+
T Consensus 28 ~~Ge--~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGE--ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTC--EEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCC--EEEEECCCCchHHHHHHHHhcCC
Confidence 3444 58999999999999999999865
No 181
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.41 E-value=0.00058 Score=56.82 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=30.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC--CceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN--TTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~--~~~~il~~~~~ 136 (317)
+++++++||... |.+.....+.+.+.+... ...+|++|++.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 689999999985 677788888888776532 45677777764
No 182
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.41 E-value=0.0014 Score=56.04 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=32.0
Q ss_pred CCCCcccCCHHHHHHHHH---------------HHhcCCCceEEEECCCCCCHHHHHH-HHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKV---------------FSSSGNVPNIIISGPPGVGKTTTIL-CLARIL 55 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~---------------~l~~~~~~~~ll~G~~G~GKt~la~-~la~~l 55 (317)
.+|+++--.+.+.+.|.. .+..|...++++.+|+|+|||.+.. .+...+
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 467877667776665543 2334433379999999999998743 444444
No 183
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.40 E-value=0.0011 Score=59.52 Aligned_cols=26 Identities=38% Similarity=0.382 Sum_probs=22.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPS 59 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~ 59 (317)
+++.||+|+||||++..++..+....
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999998875433
No 184
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.39 E-value=0.001 Score=54.37 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=29.6
Q ss_pred CCCCcccCCHHHHHHHHHH---------------HhcCCCceEEEECCCCCCHHHHH-HHHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKVF---------------SSSGNVPNIIISGPPGVGKTTTI-LCLARIL 55 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~la-~~la~~l 55 (317)
.+|+++--.+.+.+.+... +.+|+ ++++.+|+|+|||... ..+...+
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGL--DLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCcHHHHHHHHHHHHH
Confidence 3477765556555554332 23343 6999999999999874 3444444
No 185
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.37 E-value=0.00082 Score=57.25 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.||||+||||+++.++..+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998874
No 186
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.36 E-value=0.00094 Score=58.36 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
+.|+||||+||||+++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 187
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.35 E-value=0.0017 Score=56.61 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
++|+||||+|||+++..++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999874
No 188
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.34 E-value=0.0012 Score=53.16 Aligned_cols=108 Identities=23% Similarity=0.354 Sum_probs=55.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCC--CCceEE-------ecCCCCcChHHHHHHHHHHHhhcccCCCCceeE
Q psy879 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSF--KDAVLE-------LNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKI 99 (317)
Q Consensus 29 ~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 99 (317)
+..+++++.|++|+|||+++..++........ ..+... +.-.+..+....+.....+...... ....-+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~--~~~~~i 87 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK--FVKGLI 87 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGG--GEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhccc--cCCEEE
Confidence 34567999999999999999999986432210 000000 0001112222232333322222100 023457
Q ss_pred EEEeCC-CC-CCHHHHHHHHHHhhh----ccCCceEEEEecCCCc
Q psy879 100 VILDEA-DS-MTDGAQQALRRTMEI----YSNTTRFALACNNSEK 138 (317)
Q Consensus 100 liiDE~-d~-l~~~~~~~ll~~le~----~~~~~~~il~~~~~~~ 138 (317)
+++|-. +. -.......+..++.. .+....++++.|..+.
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 777876 22 223344455555553 3456778888887664
No 189
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.34 E-value=5.9e-05 Score=66.43 Aligned_cols=42 Identities=7% Similarity=0.186 Sum_probs=29.7
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccC--CceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSN--TTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~--~~~~il~~~~~~ 137 (317)
+++++++||.- .|.......+.+.+.+... ...+|++|++..
T Consensus 157 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 68999999997 4666777777776665432 456788887743
No 190
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.33 E-value=8.1e-05 Score=70.04 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=30.9
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+-. +.+.....+.+.+.+......+|+++++..
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 578999999985 566777777777776544556777787743
No 191
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.33 E-value=7.6e-05 Score=76.42 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.+.||+|+||||+++.+.+.+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 589999999999999999998753
No 192
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.33 E-value=0.0026 Score=56.04 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=26.1
Q ss_pred CceeEEEEeCCCCCCH--HHHHHHHHHhhhccCCceEEEEecCC
Q psy879 95 GRHKIVILDEADSMTD--GAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~--~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
....++|+||+|.+.. .....+..++...+....+++.|...
T Consensus 144 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 187 (395)
T 3pey_A 144 QKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATF 187 (395)
T ss_dssp TTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred ccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecC
Confidence 4568999999998764 23344445555555556666655443
No 193
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.31 E-value=0.0017 Score=53.85 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=24.6
Q ss_pred CceeEEEEeCCCCCCHH-HHHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDG-AQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~-~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....++|+||+|.+... ....+.+++...+....+++.|..
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT 226 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 226 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESS
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEecc
Confidence 45679999999977543 233455555555545555554433
No 194
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.30 E-value=0.0014 Score=53.89 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=24.5
Q ss_pred CceeEEEEeCCCCCCHH-HHHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDG-AQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~-~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....++|+||+|.+... ....+..++...+....+++.|..
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 35689999999977532 233444555544555565555443
No 195
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.29 E-value=0.00068 Score=56.72 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||... |.+.....+.+.+.+... .+|++|++.+
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 689999999975 677888889998887655 5777777643
No 196
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.29 E-value=0.00063 Score=53.80 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=50.2
Q ss_pred eEEEECCCCCCHH-HHHHHHHHHHcCCCCCCceEEecCC-CCcChHHHHHHHHHHHhh-cccC------CCCceeEEEEe
Q psy879 33 NIIISGPPGVGKT-TTILCLARILLGPSFKDAVLELNAS-NDRGIDTVRNKIKMFAQQ-KVTL------PPGRHKIVILD 103 (317)
Q Consensus 33 ~~ll~G~~G~GKt-~la~~la~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~------~~~~~~vliiD 103 (317)
-+++|||.|+||| .+.+++.+..... ..++.+.+. +.+....+...++..... +... ......+|+||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlID 98 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 98 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEE
Confidence 3899999999999 8888888775432 223333322 111111122222110000 0000 00235699999
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCceEEEEec
Q psy879 104 EADSMTDGAQQALRRTMEIYSNTTRFALACN 134 (317)
Q Consensus 104 E~d~l~~~~~~~ll~~le~~~~~~~~il~~~ 134 (317)
|+..+ ++ +..++..+.+ .+..+|+++-
T Consensus 99 EaQFf-k~-~ve~~~~L~~--~gk~VI~~GL 125 (195)
T 1w4r_A 99 EGQFF-PD-IVEFCEAMAN--AGKTVIVAAL 125 (195)
T ss_dssp SGGGC-TT-HHHHHHHHHH--TTCEEEEEEE
T ss_pred chhhh-HH-HHHHHHHHHH--CCCeEEEEec
Confidence 99999 65 5555555553 3445666543
No 197
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.29 E-value=0.0002 Score=57.36 Aligned_cols=32 Identities=38% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 22 l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+.-.+..+. .++|.||+|+||||+++.+++.+
T Consensus 18 ~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 18 LYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 443444444 79999999999999999999987
No 198
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.27 E-value=0.0013 Score=53.23 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred ceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEE-ecCCCc
Q psy879 96 RHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALA-CNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~-~~~~~~ 138 (317)
...++|+||+|.+.... ...+..++...+....+++. ++.+..
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~ 194 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEK 194 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGG
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHH
Confidence 45789999999875432 33455555555555555544 443333
No 199
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.25 E-value=0.0024 Score=54.45 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=25.9
Q ss_pred HHHHHh----cCCCce-EEEECCCCCCHHHHHHHHHHHHc
Q psy879 22 LKVFSS----SGNVPN-IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 22 l~~~l~----~~~~~~-~ll~G~~G~GKt~la~~la~~l~ 56 (317)
|...+. .|-++. ++++||||+|||+++..++....
T Consensus 14 LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 14 MNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp HHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 444455 444444 89999999999999888887654
No 200
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.24 E-value=0.00083 Score=60.23 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.|+||+||||+++.+++.+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999875
No 201
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.24 E-value=0.00093 Score=70.04 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
+++++||||||||+++..++.+....
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 59999999999999999999876433
No 202
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.24 E-value=0.0029 Score=50.07 Aligned_cols=23 Identities=43% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 203
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.24 E-value=0.00047 Score=55.53 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+...+.+..++. +. ++++.+|+|+|||.++...+...
T Consensus 35 ~~~Q~~~i~~~~~-~~--~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 35 RPYQMEVAQPALE-GK--NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CHHHHHHHHHHHT-TC--CEEEECSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc-CC--CEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444444554443 33 69999999999999988877654
No 204
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.23 E-value=0.002 Score=56.22 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=26.0
Q ss_pred CceeEEEEeCCCCCCHH-HHHHHHHHhhhccCCceEEEEecCC
Q psy879 95 GRHKIVILDEADSMTDG-AQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~-~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
....++|+||+|.+... ....+.+++...+....+++.|..+
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 188 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATM 188 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeecc
Confidence 45689999999987433 2344555555555556666554443
No 205
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.23 E-value=0.00022 Score=56.18 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=22.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
++++|.|++|+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999987
No 206
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.20 E-value=0.00019 Score=73.35 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.0
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||+-. +..+....+.+.+........+|+++++..
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 578999999985 455566666666665445556777787643
No 207
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.20 E-value=0.00019 Score=56.13 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.|+||+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999986
No 208
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.18 E-value=0.0017 Score=56.20 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
++++||||+|||+++..++...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHhHHHHHHHHHH
Confidence 8999999999999999999875
No 209
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.15 E-value=0.00033 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..+.|.||+|+||||+++.++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 369999999999999999999986
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.14 E-value=0.00033 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999987
No 211
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.14 E-value=0.0028 Score=51.83 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=25.3
Q ss_pred CceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....++|+||+|.+.... ...+..++...+....+++.|..
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 211 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSAT 211 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESS
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEee
Confidence 456799999999875432 34455556655555555554433
No 212
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00027 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 213
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.11 E-value=0.00037 Score=54.66 Aligned_cols=24 Identities=54% Similarity=0.732 Sum_probs=22.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+.++|+|+||+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999986
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.11 E-value=0.00029 Score=54.81 Aligned_cols=23 Identities=48% Similarity=0.626 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 215
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.11 E-value=0.0028 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999863
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.10 E-value=0.002 Score=55.05 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Q psy879 34 IIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
+++.||+|+||||++..+|..+..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Confidence 899999999999999999998753
No 217
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.08 E-value=0.00036 Score=54.48 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 218
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.08 E-value=0.00029 Score=56.85 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=31.9
Q ss_pred ccCCCCCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Q psy879 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 3 ky~P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~ 54 (317)
..+|+++. +..+++. +..|. .+.+.||+|+||||+++.++..
T Consensus 4 ~i~pk~~g----~~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLG----QKHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHH----HHHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHh----HHHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 45788764 4444444 35666 6899999999999999999986
No 219
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.07 E-value=0.0089 Score=52.60 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=26.0
Q ss_pred CceeEEEEeCCCCCCH--HHHHHHHHHhhhccCCceEEEEec
Q psy879 95 GRHKIVILDEADSMTD--GAQQALRRTMEIYSNTTRFALACN 134 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~--~~~~~ll~~le~~~~~~~~il~~~ 134 (317)
....++|+||+|.+.. .....+..++...+....+++.|.
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 192 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 192 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEe
Confidence 4567899999998864 444555666665555555555443
No 220
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.05 E-value=0.00025 Score=72.45 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=32.5
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccCCceEEEEecCCCcC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSNTTRFALACNNSEKI 139 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~~~~~il~~~~~~~l 139 (317)
+++++++||+-. +.......+.+.+.+......+|+++++.+.+
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHH
Confidence 578999999985 56667777777777655556678888876543
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.05 E-value=0.004 Score=53.03 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.||+|+||||++..++..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 222
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.04 E-value=0.00061 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999999874
No 223
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.04 E-value=0.00046 Score=58.65 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
++|.||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 224
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.01 E-value=0.01 Score=52.50 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=29.9
Q ss_pred CCCCcccCCHHHHHHHHH---------------HHhcCCCceEEEECCCCCCHHHHHHHHHHH
Q psy879 7 QTFSDIVGNEDTVERLKV---------------FSSSGNVPNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~---------------~l~~~~~~~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+|+++--.+.+.+.|.. .+.+|+ ++++.+|+|+|||..+...+-.
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~--~~li~a~TGsGKT~~~~~~~~~ 81 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR--DILARAKNGTGKTAAFVIPTLE 81 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC--CEEEECCTTSCHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC--CEEEECCCCcHHHHHHHHHHHH
Confidence 457777656655555443 122343 5999999999999876555443
No 225
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00045 Score=54.26 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999874
No 226
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.01 E-value=0.00044 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.|+||+||||+++.+++.+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999874
No 227
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.00 E-value=0.0047 Score=50.80 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=26.0
Q ss_pred CceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~~~~ 135 (317)
...+++|+||+|.+.... ...+..++...++...+++.|..
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 456799999999876532 44455556655555666555433
No 228
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.99 E-value=0.0059 Score=49.59 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=25.4
Q ss_pred CceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~~~~ 135 (317)
...+++|+||+|.+.... ...+..++...+.+..+++.|..
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 456899999999875432 34455555555555565555433
No 229
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.99 E-value=0.012 Score=49.29 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++.+.||+|+||||+.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998764
No 230
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00054 Score=54.01 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..++|+|++|+||||+++.+++.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999999983
No 231
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.00041 Score=57.77 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999986
No 232
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.97 E-value=0.0022 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|+||||+||||+++.++-..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCChHHHHHHHHHHh
Confidence 38999999999999999877443
No 233
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.97 E-value=0.00044 Score=54.04 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.++|.|+||+||||+++.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 3899999999999999999983
No 234
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.97 E-value=0.0006 Score=56.61 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 14 GNEDTVERLKVFSSS---GNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 14 g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+...+++.+.-.+.. |. .+.|.|++|+||||+++.+++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 334566666655665 65 79999999999999999999987
No 235
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.96 E-value=0.00055 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=22.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++|.|++|+||||+++.+++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999987
No 236
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.96 E-value=0.00045 Score=54.60 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=22.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.++|.|+||+||||+++.+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998753
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.96 E-value=0.00092 Score=53.79 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 17 DTVERLKVFSSSG--NVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 17 ~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++.+.+...+... ....+.|.||+|+||||+++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444454444332 222489999999999999999999874
No 238
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.95 E-value=0.0062 Score=54.02 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=30.5
Q ss_pred CCCCcccCCHHHHHHHHHH---------------HhcCCCceEEEECCCCCCHHHHHHH-HHHHH
Q psy879 7 QTFSDIVGNEDTVERLKVF---------------SSSGNVPNIIISGPPGVGKTTTILC-LARIL 55 (317)
Q Consensus 7 ~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~la~~-la~~l 55 (317)
++|+++--.+.+.+.+... +.++...++++.+|+|+|||..+.. +...+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 4567665566655554332 2334333699999999999988643 44443
No 239
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.00054 Score=53.89 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 240
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.95 E-value=0.00053 Score=54.24 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
No 241
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=96.95 E-value=0.011 Score=46.74 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhHHhcCC-CcH
Q psy879 219 EPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRISEGV-NSL 296 (317)
Q Consensus 219 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~~~ 296 (317)
..+.+.++.++++++..|.+.|+.|+..|++.|++|..|.+.+.+++ +.+|+.+.....+...+.+.-.++ |. ..+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i--G~PE~~ 110 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV--GFPEGL 110 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH--CTTTTH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh--CCCHHH
Confidence 45677899999999999999999999999999999999999998876 455666655544444444444433 55 777
Q ss_pred HHHHHHHHHHHH
Q psy879 297 LQLSGLLARLCI 308 (317)
Q Consensus 297 l~le~~~~~~~~ 308 (317)
+.|-..+.-+|.
T Consensus 111 i~LaqaviyLA~ 122 (213)
T 3ctd_A 111 FFLSQASLYLAI 122 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888777777773
No 242
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.93 E-value=0.00066 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.93 E-value=0.00036 Score=55.21 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+.|.||+|+||||+++.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999885
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.92 E-value=0.00055 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|++|+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999986
No 245
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.92 E-value=0.0046 Score=56.37 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=26.4
Q ss_pred CceeEEEEeCCCCCCH--HHHHHHHHHhhhccCCceEEEEecCC
Q psy879 95 GRHKIVILDEADSMTD--GAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~--~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
...++|||||+|.+.. .....+..++...+....+++.+..+
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 277 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCC
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCC
Confidence 4568999999997743 33444445555555566666655443
No 246
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.91 E-value=0.00059 Score=53.68 Aligned_cols=23 Identities=48% Similarity=0.717 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999886
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.91 E-value=0.0031 Score=53.72 Aligned_cols=23 Identities=48% Similarity=0.655 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.||+|+|||+++..+++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 48899999999999999999986
No 248
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.91 E-value=0.00086 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999986
No 249
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.89 E-value=0.0016 Score=57.33 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+++.||+|+||||++++++..+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 599999999999999999999874
No 250
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.88 E-value=0.0039 Score=55.80 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCC-----ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHH-------
Q psy879 17 DTVERLKVFSSSGNV-----PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKM------- 84 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~-----~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------- 84 (317)
.+++.|...++.+.. +..++.|+||+|||+++..++.. . ...-+.+. ....+++++.+..
T Consensus 142 ~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~~------~-~~lVlTpT-~~aa~~l~~kl~~~~~~~~~ 213 (446)
T 3vkw_A 142 AKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNF------E-EDLILVPG-RQAAEMIRRRANASGIIVAT 213 (446)
T ss_dssp HHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCCT------T-TCEEEESC-HHHHHHHHHHHTTTSCCCCC
T ss_pred HHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhcc------C-CeEEEeCC-HHHHHHHHHHhhhcCccccc
Confidence 455566666433322 23799999999999999877642 1 11222222 1222333333321
Q ss_pred ---------HHhhcccCCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecC
Q psy879 85 ---------FAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 85 ---------~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
+.............++||||+..+......+++..+. . ..+|++...
T Consensus 214 ~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~---~-~~vilvGD~ 269 (446)
T 3vkw_A 214 KDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL---C-DIAYVYGDT 269 (446)
T ss_dssp TTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT---C-SEEEEEECT
T ss_pred cceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC---C-CEEEEecCc
Confidence 0000000000126899999999998887777766542 2 667777654
No 251
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.88 E-value=0.008 Score=53.38 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=25.9
Q ss_pred CceeEEEEeCCCCCCHH-HHHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDG-AQQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~-~~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....++|+||+|.+... ....+..++...+....+++.|..
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 219 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcC
Confidence 45689999999987543 244555666655555555555433
No 252
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.87 E-value=0.0062 Score=58.93 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.0
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHH
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+.++. ++++.||+|+|||+++..++..
T Consensus 105 ~l~~~~--~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 105 LYQNNQ--IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 344444 6999999999999977666543
No 253
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.85 E-value=0.0024 Score=57.04 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=35.0
Q ss_pred CCCcccCCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 8 TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
+++++--.......|...+. ..-..+++.||+|+||||+.++++..+...
T Consensus 145 ~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp CGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45555445555555666543 222248999999999999999999988543
No 254
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.85 E-value=0.003 Score=58.38 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHH-HHhcCCCceEEEECCCCCCHHHHHHHH--HHHH
Q psy879 18 TVERLKV-FSSSGNVPNIIISGPPGVGKTTTILCL--ARIL 55 (317)
Q Consensus 18 ~~~~l~~-~l~~~~~~~~ll~G~~G~GKt~la~~l--a~~l 55 (317)
+++.+.- -+..|. .+++.||+|+||||+++.+ +..+
T Consensus 27 ~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 27 GFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp THHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3444433 344555 6999999999999999994 4544
No 255
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.85 E-value=0.00086 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||||+||+|.++.+++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48889999999999999999986
No 256
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.85 E-value=0.00072 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||+|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999876
No 257
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00073 Score=52.41 Aligned_cols=23 Identities=43% Similarity=0.479 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|++|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 258
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.84 E-value=0.0018 Score=52.02 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=26.3
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEe
Q psy879 95 GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALAC 133 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~ 133 (317)
.+..+|+|||+.+++++..+.+.++.+ .+..+|+..
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 456799999999999987777776663 345555554
No 259
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.84 E-value=0.0024 Score=60.60 Aligned_cols=41 Identities=32% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
-++...+.+..++.+.. -.++.||||||||+++-.+...+.
T Consensus 190 LN~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CCHHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHH
Confidence 36677777888776543 589999999999987766665554
No 260
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.83 E-value=0.00071 Score=56.31 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.||+|+||||+++.+++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999986
No 261
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.82 E-value=0.0013 Score=56.22 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+++.+.-.+..|. .+.|+||+|+||||+++.++..+
T Consensus 115 vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence 3444444445555 69999999999999999999986
No 262
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.79 E-value=0.0084 Score=53.23 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=26.5
Q ss_pred CceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEEecC
Q psy879 95 GRHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALACNN 135 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~~~~ 135 (317)
....++|+||+|.+.... ...+..++...+....+|+.|..
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 346799999999875432 34555666665566666665544
No 263
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.79 E-value=0.00085 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999987
No 264
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.79 E-value=0.00082 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.|+||+||||+++.+++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999874
No 265
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.79 E-value=0.0011 Score=52.86 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 266
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.78 E-value=0.00085 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 267
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.78 E-value=0.00075 Score=55.84 Aligned_cols=38 Identities=26% Similarity=0.174 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..+++.+.-.+..|. .+.|.||+|+||||+++.++..+
T Consensus 12 ~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence 344455544444443 58999999999999999999976
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.78 E-value=0.00084 Score=54.00 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
++|.||||+||+|.++.+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999986
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.78 E-value=0.00085 Score=52.86 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.++|.|++|+||||+++.++..+..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998743
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.77 E-value=0.00076 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||||+||||+++.+++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999986
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.77 E-value=0.00099 Score=53.23 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999999874
No 272
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=96.76 E-value=0.026 Score=44.13 Aligned_cols=87 Identities=10% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhHHhcCC-Cc
Q psy879 218 DEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRISEGV-NS 295 (317)
Q Consensus 218 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~~ 295 (317)
+....+.++.++++++..|.+.|+.|+..|++.| +|..|.+.+.+.+ +.+|+.+.....+...+.+.-.+ -|. ..
T Consensus 11 Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~--iG~PE~ 87 (204)
T 2r9g_A 11 GDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEK--LGLPEA 87 (204)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHH--HCTTTT
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH--hCCCHH
Confidence 3566788999999999999999999999999999 9999999998875 45576665544444444444333 344 77
Q ss_pred HHHHHHHHHHHH
Q psy879 296 LLQLSGLLARLC 307 (317)
Q Consensus 296 ~l~le~~~~~~~ 307 (317)
++.|-..+.-+|
T Consensus 88 ~i~LaqaviyLA 99 (204)
T 2r9g_A 88 RIPLADVVVDLC 99 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778777777777
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.76 E-value=0.00095 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999975
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.75 E-value=0.00098 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 275
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.75 E-value=0.0052 Score=56.54 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=25.5
Q ss_pred CceeEEEEeCCCCCCH--HHHHHHHHHhhhccCCceEEEEecCC
Q psy879 95 GRHKIVILDEADSMTD--GAQQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~--~~~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
....+||+||+|.+.. .....+..++...+....+|+.|..+
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 4578999999998764 22334444555455566666554443
No 276
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.74 E-value=0.0012 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=22.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..++|.|+||+||||+++.+++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999987
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.73 E-value=0.00099 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999875
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.73 E-value=0.00098 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999873
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.73 E-value=0.001 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.73 E-value=0.0044 Score=64.23 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=42.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCc---------------------ChHHHHHHHHHHHhhccc
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR---------------------GIDTVRNKIKMFAQQKVT 91 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~~~ 91 (317)
.++|+||||+|||+++..++...... +..+++++..... ....+.+.+..+...
T Consensus 36 i~lI~G~pGsGKT~LAlqla~~~~~~--G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~--- 110 (1706)
T 3cmw_A 36 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS--- 110 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhC--CCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhc---
Confidence 49999999999999999998764322 2233433332211 122233333333221
Q ss_pred CCCCceeEEEEeCCCCCCH
Q psy879 92 LPPGRHKIVILDEADSMTD 110 (317)
Q Consensus 92 ~~~~~~~vliiDE~d~l~~ 110 (317)
...++||||++..+..
T Consensus 111 ---~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 111 ---GAVDVIVVDSVAALTP 126 (1706)
T ss_dssp ---TCCSEEEESCSTTCCC
T ss_pred ---cCCCEEEEcchhhhcc
Confidence 3578999999998854
No 281
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.73 E-value=0.00087 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999986
No 282
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.012 Score=55.20 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=29.5
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhccC-CceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYSN-TTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~~-~~~~il~~~~~ 136 (317)
+++++++||.-. |.......+.+++.+... ...+|+++++.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 678999999975 567777778888776533 34567777664
No 283
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.73 E-value=0.00063 Score=53.32 Aligned_cols=23 Identities=52% Similarity=0.598 Sum_probs=17.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999886
No 284
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.72 E-value=0.0023 Score=54.30 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.+.||+|+||||+++.++..+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 389999999999999999999874
No 285
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.0023 Score=51.11 Aligned_cols=40 Identities=25% Similarity=0.103 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCC--Cc-eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 17 DTVERLKVFSSSGN--VP-NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 17 ~~~~~l~~~l~~~~--~~-~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+.++.+...+.+.. .+ .+.+.|++|+||||+++.++..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444544444322 12 389999999999999999999873
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.71 E-value=0.0011 Score=53.36 Aligned_cols=29 Identities=34% Similarity=0.715 Sum_probs=23.2
Q ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 25 FSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 25 ~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+..|. .+.|.||+|+||||+++.++..+
T Consensus 16 ~i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGR--VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCC--EEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 345555 58999999999999999999975
No 287
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.71 E-value=0.0058 Score=53.86 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=25.7
Q ss_pred CceeEEEEeCCCCCCHHH-HHHHHHHhhhccCCceEEEEecCC
Q psy879 95 GRHKIVILDEADSMTDGA-QQALRRTMEIYSNTTRFALACNNS 136 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~-~~~ll~~le~~~~~~~~il~~~~~ 136 (317)
....++|+||+|.+.... ...+..++...++...+++.|..+
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 203 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 203 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEec
Confidence 457899999999874432 334445555555556566655443
No 288
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.71 E-value=0.013 Score=49.28 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+...+.+..++.++ +.++.+|+|+|||.++..++...
T Consensus 115 ~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 115 HWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHH
Confidence 444555566556542 46889999999999998877654
No 289
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.71 E-value=0.00095 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.70 E-value=0.0013 Score=54.46 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=22.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999886
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.69 E-value=0.0011 Score=53.93 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 20 ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 20 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+.+.-.+..|. .+.|.||+|+||||+++.++..+
T Consensus 14 ~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCC--CEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 33444455665 59999999999999999999975
No 292
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=96.68 E-value=0.018 Score=45.00 Aligned_cols=85 Identities=8% Similarity=0.092 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhHHhcCC-CcHHH
Q psy879 221 HPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRISEGV-NSLLQ 298 (317)
Q Consensus 221 ~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~~~l~ 298 (317)
..+.++.++++++..|.+.|+.|+..|++.|++|..|.+.+.+++ +.+|+.+.....+...+.+.-.+ -|. ..++.
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~--iG~PE~~i~ 84 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTR--VGAYEGERA 84 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH--HCCcHHHHH
Confidence 456899999999999999999999999999999999999998875 44566555444433333333332 244 55667
Q ss_pred HHHHHHHHH
Q psy879 299 LSGLLARLC 307 (317)
Q Consensus 299 le~~~~~~~ 307 (317)
|-..+.-+|
T Consensus 85 LaqaviyLA 93 (201)
T 3bge_A 85 IAQAIIYLS 93 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666666
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.68 E-value=0.00098 Score=52.63 Aligned_cols=23 Identities=57% Similarity=0.712 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||+|+||||+++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999999753
No 294
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.67 E-value=0.00099 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 295
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.66 E-value=0.001 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999985
No 296
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.65 E-value=0.0096 Score=55.03 Aligned_cols=42 Identities=5% Similarity=0.100 Sum_probs=31.9
Q ss_pred ceeEEEEeCCC-CCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 96 RHKIVILDEAD-SMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 96 ~~~vliiDE~d-~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+++++++||.- .|....+..+.+++.+......+|+++++..
T Consensus 156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~ 198 (538)
T 3ozx_A 156 EADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH
Confidence 68899999997 5677778888888876655566778887653
No 297
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.65 E-value=0.0012 Score=52.14 Aligned_cols=24 Identities=38% Similarity=0.318 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999873
No 298
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.64 E-value=0.0012 Score=53.71 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999976
No 299
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.02 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=17.3
Q ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Q psy879 33 NIIISGPPGVGKTTTIL-CLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~-~la~~l 55 (317)
++++.+|+|+|||.+.. .+...+
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 69999999999998743 334444
No 300
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.62 E-value=0.003 Score=56.72 Aligned_cols=24 Identities=46% Similarity=0.555 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|+|++|+||||++..++..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999999874
No 301
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.62 E-value=0.0011 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.|++|+||||+++.+++.+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.62 E-value=0.0011 Score=52.30 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999875
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.61 E-value=0.0016 Score=52.44 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999999875
No 304
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.61 E-value=0.0013 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 305
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.61 E-value=0.0028 Score=60.97 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+.+.++...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 48999999999999999999765
No 306
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.59 E-value=0.012 Score=50.08 Aligned_cols=25 Identities=40% Similarity=0.377 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+.+.|++|+||||++..+|..+..
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3788899999999999999998753
No 307
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.58 E-value=0.0012 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.58 E-value=0.0016 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.|++|+||||+++.+++.+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999999874
No 309
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.57 E-value=0.0014 Score=51.65 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||+|+||||+++.+.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999998874
No 310
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.56 E-value=0.0015 Score=59.96 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
...+.+.+...+..|. ++++.||+|+||||++++++..+
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 5677778888888887 69999999999999999999876
No 311
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.54 E-value=0.0019 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.|++|+||||+++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999986
No 312
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.54 E-value=0.0055 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.|+||+|||+++..++....
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999997654
No 313
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.53 E-value=0.028 Score=51.39 Aligned_cols=25 Identities=40% Similarity=0.356 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.++|.|++|+||||++..++..+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999987753
No 314
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.52 E-value=0.017 Score=54.27 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=29.6
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~ 136 (317)
++.++++||.-. |....+..+.+.+.+.. ....+|+++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 678999999975 56777778888777642 345567777663
No 315
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.50 E-value=0.0051 Score=51.33 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=24.5
Q ss_pred CceeEEEEeCCCCCCHH-HHHHHHHHhhhccCCceEEEEec
Q psy879 95 GRHKIVILDEADSMTDG-AQQALRRTMEIYSNTTRFALACN 134 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~-~~~~ll~~le~~~~~~~~il~~~ 134 (317)
...+++|+||+|.+... ....+..++...+....+++.|-
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SA 240 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECS
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEe
Confidence 45789999999987543 23344455555555555555443
No 316
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.0018 Score=52.37 Aligned_cols=43 Identities=21% Similarity=0.133 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++.+..+.+...+..++.+.+++.|++|+||||++..++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3455566666666666767799999999999999999998863
No 317
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.49 E-value=0.0028 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.|++|+||||+++.+++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999999874
No 318
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.47 E-value=0.028 Score=50.86 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.46 E-value=0.014 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 320
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.44 E-value=0.0014 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999975
No 321
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.44 E-value=0.0036 Score=56.38 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 18 TVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 18 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.|..+.+.+ ..+|+||+|+|||+++..++....
T Consensus 141 ~ID~L~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLLAPYIKGG---KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHSCEETTC---EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCC---EEEEECCCCCCccHHHHHHHhhhh
Confidence 455555555433 589999999999999999987653
No 322
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.43 E-value=0.0026 Score=49.23 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=24.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 31 VPNIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 31 ~~~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
.+.+.|.|++|+||||++..++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4468999999999999999999987543
No 323
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.42 E-value=0.002 Score=51.73 Aligned_cols=23 Identities=48% Similarity=0.481 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 324
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.41 E-value=0.0097 Score=45.40 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||++++.+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999875
No 325
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.39 E-value=0.0062 Score=57.30 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 30 NVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 30 ~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+|.+.+.||+|+||||+.++++..+
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 34669999999999999999999864
No 326
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.39 E-value=0.014 Score=52.62 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+...+.+..++.+ +.++.+|+|+|||..+-.++...
T Consensus 11 ~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 11 RIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 44444555555543 78999999999999998887665
No 327
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.39 E-value=0.0048 Score=52.71 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
.+.|.||+|+||||+++.++..+...
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 48999999999999999999987543
No 328
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.38 E-value=0.0029 Score=50.54 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Q psy879 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~ 54 (317)
+++...+.+.......+.-.+++.|++|+|||+++..+...
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 45555556655555544445999999999999999998864
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.36 E-value=0.0023 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.+++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999999874
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.34 E-value=0.0018 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.+.|.||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 331
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.34 E-value=0.0024 Score=52.22 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999987
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.32 E-value=0.002 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+.|++|+||||+++.+++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
No 333
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.32 E-value=0.0039 Score=50.53 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++..+.++..+.....+.+++.|++|+||||++..++....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33445566666666666799999999999999999998864
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.31 E-value=0.0067 Score=51.93 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.||+|+||||+++.++..+.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999874
No 335
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.008 Score=55.56 Aligned_cols=41 Identities=7% Similarity=0.142 Sum_probs=29.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~ 136 (317)
+++++++||.-. |....+..+.+.+.+.. ....+|+++++.
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 679999999975 56677777777776542 345567777663
No 336
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.28 E-value=0.0027 Score=52.66 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 30 NVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 30 ~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
++..+.|.|++|+||||+++.+++.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33348999999999999999999986
No 337
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.27 E-value=0.0027 Score=50.49 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~ 54 (317)
..+.|.|++|+||||+++.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35899999999999999999985
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.27 E-value=0.05 Score=41.01 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998864
No 339
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.27 E-value=0.003 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999986
No 340
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.27 E-value=0.008 Score=51.88 Aligned_cols=25 Identities=48% Similarity=0.500 Sum_probs=22.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
+.|.||+|+||||+++.++..+...
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999987543
No 341
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.26 E-value=0.0034 Score=55.10 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 20 ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 20 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+.+.-.+..|. .+++.||+|+||||++++++..+.
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 66777778887 799999999999999999998753
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.26 E-value=0.0042 Score=53.39 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+.|.||+|+||||+++.++..+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 343
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.25 E-value=0.012 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++.++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999875
No 344
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.23 E-value=0.042 Score=55.56 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLA 52 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la 52 (317)
|..++..+...+.+|++.+.+++||.|+|||.++...+
T Consensus 608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 44555555555556776679999999999998876544
No 345
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.22 E-value=0.0094 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+++.||+|+||||+++.++..+..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999987643
No 346
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.22 E-value=0.013 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.|++|+|||++++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 38999999999999998777653
No 347
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.20 E-value=0.0064 Score=59.76 Aligned_cols=21 Identities=38% Similarity=0.306 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.++|+||+|+||||+.+.++.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999853
No 348
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.19 E-value=0.0016 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=15.1
Q ss_pred eEEEECCCCCCHHHHHHHHH-HHH
Q psy879 33 NIIISGPPGVGKTTTILCLA-RIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la-~~l 55 (317)
.+.|.||+|+||||+++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 58999999999999999999 764
No 349
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.19 E-value=0.0029 Score=52.53 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999876
No 350
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.017 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.|++|+|||+++..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 351
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.18 E-value=0.046 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.++|.||+|+||||+.+.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 4899999999999999998753
No 352
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.17 E-value=0.017 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 353
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.16 E-value=0.0053 Score=56.15 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 15 NEDTVERLKVFSS--SGNVPNIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 15 ~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+++.+.+..... ......++|.|.+|+||||+++++++.|..
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5667677776652 222235999999999999999999999853
No 354
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.16 E-value=0.0029 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.||+|+|||++++.+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
No 355
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.12 E-value=0.0037 Score=51.10 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+.|.|++|+||||+++.+++.+..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3899999999999999999999853
No 356
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.12 E-value=0.022 Score=52.07 Aligned_cols=118 Identities=15% Similarity=0.213 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHHHhh-ccc--
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ-KVT-- 91 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-- 91 (317)
|.+.+..+......+. +.++.-+.|+|||..+-+++..+........++-+.+.. -..++.+.+..+... ...
T Consensus 42 Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~--l~~qw~~e~~~~~~~~~v~~~ 117 (500)
T 1z63_A 42 QIKGFSWMRFMNKLGF--GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS--VLKNWEEELSKFAPHLRFAVF 117 (500)
T ss_dssp HHHHHHHHHHHHHTTC--CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST--THHHHHHHHHHHCTTSCEEEC
T ss_pred HHHHHHHHHHHhhCCC--CEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH--HHHHHHHHHHHHCCCceEEEE
Confidence 4444444444334444 688999999999999988887765333223344454432 345555555544311 000
Q ss_pred ---------------------------CCCCceeEEEEeCCCCCCHHHHHHHHHHhhhccCCceEEEEecCCC
Q psy879 92 ---------------------------LPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSE 137 (317)
Q Consensus 92 ---------------------------~~~~~~~vliiDE~d~l~~~~~~~ll~~le~~~~~~~~il~~~~~~ 137 (317)
+......+||+||++.+.... ....+.+...+...++.+++++..
T Consensus 118 ~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 118 HEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp SSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred ecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 001246899999999985432 123334444444556777776644
No 357
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.11 E-value=0.02 Score=44.01 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999865
No 358
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.11 E-value=0.011 Score=51.63 Aligned_cols=40 Identities=40% Similarity=0.600 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEec
Q psy879 29 GNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68 (317)
Q Consensus 29 ~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~ 68 (317)
++.+.+.|.|+||+||||++..++..+........++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 4444599999999999999999998875443333333333
No 359
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.10 E-value=0.022 Score=43.10 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 360
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.10 E-value=0.0081 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.08 E-value=0.0014 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 362
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.07 E-value=0.19 Score=41.27 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.++|.|.+|+||||++..+...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4999999999999999998753
No 363
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.06 E-value=0.055 Score=42.80 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3899999999999999999764
No 364
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.04 E-value=0.0028 Score=52.07 Aligned_cols=43 Identities=9% Similarity=0.045 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhh---hccCCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTME---IYSNTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le---~~~~~~~~il~~~~~~~ 138 (317)
+++++++||.-. |.+.....+.+.+. .......+|++|++...
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 579999999985 56777888888873 33335567888877654
No 365
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.04 E-value=0.0027 Score=51.29 Aligned_cols=28 Identities=36% Similarity=0.614 Sum_probs=23.3
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+..|. .+.+.||+|+||||+.+.++..+
T Consensus 32 i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGN--VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTC--CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 34454 58999999999999999999864
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.04 E-value=0.008 Score=49.28 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
-+.|.|++|+||||.++.+++.+...
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999988543
No 367
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.03 E-value=0.052 Score=48.71 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=27.4
Q ss_pred CCCcccCCHHHHHHHHHH---------------HhcCCCceEEEECCCCCCHHHHHH
Q psy879 8 TFSDIVGNEDTVERLKVF---------------SSSGNVPNIIISGPPGVGKTTTIL 49 (317)
Q Consensus 8 ~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~la~ 49 (317)
+|+++--.+.+.+.|... +.+|+ ++++.+|+|+|||....
T Consensus 57 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~--d~i~~a~TGsGKT~a~~ 111 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGR--DLMACAQTGSGKTAAFL 111 (434)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC--CEEEECCCCCCchHHHH
Confidence 577765566666655432 33454 69999999999998543
No 368
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.02 E-value=0.0056 Score=47.67 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 31 VPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 31 ~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.+.|.|++|+||||++..++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 34689999999999999999998864
No 369
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.00 E-value=0.0046 Score=49.04 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
+.++|++||||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999975
No 370
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.99 E-value=0.0031 Score=52.67 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=22.9
Q ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 27 SSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 27 ~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..|. .+.|.||+|+||||+.+.++..+
T Consensus 30 ~~Ge--~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGD--VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 58999999999999999999864
No 371
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.99 E-value=0.088 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.|+||+|||+++..++....
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 372
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.98 E-value=0.067 Score=42.02 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999977653
No 373
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.97 E-value=0.027 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=17.4
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHH
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILC 50 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~ 50 (317)
+.+|+ ++++.+|+|+|||.+...
T Consensus 57 i~~~~--~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 57 ILEHR--DIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp HHTTC--CEEEECCTTSSHHHHHHH
T ss_pred HhCCC--CEEEECCCCChHHHHHHH
Confidence 33454 699999999999986443
No 374
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.97 E-value=0.0038 Score=51.76 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.5
Q ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHH
Q psy879 27 SSGNVPNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 27 ~~~~~~~~ll~G~~G~GKt~la~~la~~ 54 (317)
..|. .+.|.||+|+||||+.+.++..
T Consensus 27 ~~Ge--~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGE--VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTC--EEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 3454 6899999999999999999985
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.96 E-value=0.0046 Score=53.03 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+.|.||+|+||||+++.++..+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 3899999999999999999998753
No 376
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.96 E-value=0.0071 Score=46.73 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.+++.|++|+|||+++..+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999864
No 377
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.95 E-value=0.0099 Score=47.92 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPS 59 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~ 59 (317)
-+.|.|++|+||||.++.+++.+....
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999999985443
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.95 E-value=0.0032 Score=50.45 Aligned_cols=23 Identities=43% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+.|++|+||||+++.+++.+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38899999999999999999864
No 379
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.95 E-value=0.0032 Score=52.42 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=23.4
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+..|. .+.+.||+|+||||+.+.++..+
T Consensus 30 i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGD--VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 33454 58999999999999999999865
No 380
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.94 E-value=0.021 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999865
No 381
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.94 E-value=0.065 Score=48.05 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC-CCCCceEEec
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGP-SFKDAVLELN 68 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~-~~~~~~~~~~ 68 (317)
.+++.|++|+||||++-.+|..+... +....++..+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 38889999999999999999888544 3333333333
No 382
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.93 E-value=0.0038 Score=54.19 Aligned_cols=25 Identities=48% Similarity=0.719 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+.|.||||+||||+.+.++..+..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhh
Confidence 5999999999999999999987643
No 383
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.93 E-value=0.19 Score=37.69 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.|++|+|||+++..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 384
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.92 E-value=0.015 Score=56.31 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|+||+|+||||+.+.++...
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 48999999999999999999764
No 385
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.92 E-value=0.0035 Score=51.26 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=29.3
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHH-hhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRT-MEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~-le~~~~~~~~il~~~~~ 136 (317)
+++++++||... +.+.....+.+. +........+|++|++.
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~ 190 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCCh
Confidence 578999999975 567777888876 44443455677777764
No 386
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.92 E-value=0.022 Score=54.68 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=20.3
Q ss_pred HhcCCCceEEEECCCCCCHHHHH-HHHHHHH
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTI-LCLARIL 55 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la-~~la~~l 55 (317)
+.++. ++++.||+|+|||+.+ ..+.+.+
T Consensus 36 ~~~~~--~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 36 ILEGK--NALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp GGGTC--EEEEECCGGGCHHHHHHHHHHHHH
T ss_pred hcCCC--cEEEEcCCccHHHHHHHHHHHHHH
Confidence 34444 7999999999999988 3444433
No 387
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.92 E-value=0.0042 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+.|.||+|+||||+.+.++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 388
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.91 E-value=0.0043 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|+||+|+||||+++.++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998664
No 389
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.91 E-value=0.019 Score=43.42 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 390
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.02 Score=54.95 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.1
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLA 52 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la 52 (317)
++++.||+|+|||+.+-..+
T Consensus 48 ~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 48 RLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEcCCCCcHHHHHHHHH
Confidence 69999999999999984433
No 391
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.89 E-value=0.096 Score=44.41 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Q psy879 34 IIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
+.+.|++|+||||++..++..+..
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 888999999999999999988753
No 392
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.88 E-value=0.0021 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+.||+|+||||+.+.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 393
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.87 E-value=0.0063 Score=51.76 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.||+|+|||+++..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 38899999999999999999986
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.86 E-value=0.0051 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.+.|.|++|+||||+++.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.85 E-value=0.0062 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
..+|+||+|+||||++.+++-.+.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4799999999999999999998743
No 396
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.85 E-value=0.0082 Score=48.72 Aligned_cols=36 Identities=31% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 22 l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
+.......+...+.|.|++|+||||.++.+++.+..
T Consensus 12 ~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 12 LEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -------CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 333344334334899999999999999999998854
No 397
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.85 E-value=0.034 Score=43.92 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999864
No 398
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.025 Score=52.99 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=28.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc--CCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS--NTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~--~~~~~il~~~~~ 136 (317)
+++++++||.-. |....+..+.+++.+.. ....+|++|++.
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl 528 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF 528 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999975 56667777777776542 245567777664
No 399
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.84 E-value=0.0039 Score=55.64 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
++.+.-.+..|..+++.|.||+|+||||+++.++...
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 6677777888886669999999999999999998753
No 400
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.83 E-value=0.0041 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.++|.||+|+|||+++..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999864
No 401
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.83 E-value=0.034 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
++++.+|+|+|||.++...+-.
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 6999999999999877665544
No 402
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.83 E-value=0.084 Score=43.02 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~ 54 (317)
..++|.|++|+||||++..+...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 35999999999999999999864
No 403
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.82 E-value=0.019 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~ 54 (317)
+++.|.+|+|||+++..+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 899999999999999998854
No 404
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.80 E-value=0.073 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.|+||+|||+++..++..+.
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 405
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.80 E-value=0.027 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 406
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.79 E-value=0.0041 Score=52.41 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.0
Q ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 27 SSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 27 ~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..|. .+.|.||+|+||||+.+.++..+
T Consensus 45 ~~Ge--~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGD--KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 3444 58999999999999999999865
No 407
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.79 E-value=0.015 Score=46.79 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLGPS 59 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~~~ 59 (317)
.+.|.|++|+||||.++.+++.+....
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 389999999999999999999985443
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.77 E-value=0.0053 Score=52.37 Aligned_cols=24 Identities=46% Similarity=0.494 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Q psy879 34 IIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
+.|.||+|+||||+++.++..+..
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998753
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.76 E-value=0.0057 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.||+|+||||++..+++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 48999999999999999999986
No 410
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.75 E-value=0.0045 Score=53.38 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.||+|+|||+++..+|+.+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 589999999999999999999863
No 411
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.74 E-value=0.0045 Score=51.84 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCCc
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSEK 138 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~~ 138 (317)
+++++++||... |.......+.+.+.+.. ....+|++|++.+.
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~ 200 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 688999999985 56777778888777653 34567777777543
No 412
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.74 E-value=0.029 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999865
No 413
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.72 E-value=0.043 Score=42.79 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999998864
No 414
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.71 E-value=0.018 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
++++||||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999763
No 415
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.71 E-value=0.034 Score=42.80 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 416
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.71 E-value=0.034 Score=43.91 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998764
No 417
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.70 E-value=0.033 Score=43.10 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3999999999999999999864
No 418
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.68 E-value=0.017 Score=50.35 Aligned_cols=26 Identities=38% Similarity=0.659 Sum_probs=22.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 31 VPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 31 ~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.+.|.|+||+||||+..+++..+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 34599999999999999999998764
No 419
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.044 Score=42.62 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=21.5
Q ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Q psy879 28 SGNVPNIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 28 ~~~~~~~ll~G~~G~GKt~la~~la~ 53 (317)
+.+...+++.|++|+|||+++..+..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 33434599999999999999999884
No 420
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.67 E-value=0.0094 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.|++|+||||+++.+++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999976
No 421
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.64 E-value=0.01 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||++++.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999875
No 422
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.64 E-value=0.0071 Score=56.02 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH----hcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 16 EDTVERLKVFS----SSGNVPNIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 16 ~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
+++.+.++... .+|. .+.|.|++|+||||++++++..+..
T Consensus 352 peV~~vLR~~~~~~~~~G~--iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGF--TVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCE--EEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhcccccccce--EEEEECCCCChHHHHHHHHHHhhcc
Confidence 45555555543 3333 5899999999999999999999853
No 423
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.63 E-value=0.062 Score=49.21 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+...+.+..++.. .+.++.||.|+|||.++..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 44444555555543 268999999999999997777654
No 424
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.63 E-value=0.082 Score=47.61 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+++.|+||+|||+++..++....
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHH
Confidence 89999999999999999998764
No 425
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.017 Score=45.32 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~ 54 (317)
..+++.|++|+|||+++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999875
No 426
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.61 E-value=0.02 Score=43.60 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.+++.|++|+|||+++..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 427
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.60 E-value=0.034 Score=50.37 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.5
Q ss_pred HHHHhcCCCceEEEECCCCCCHHHH-HHHHHHHH
Q psy879 23 KVFSSSGNVPNIIISGPPGVGKTTT-ILCLARIL 55 (317)
Q Consensus 23 ~~~l~~~~~~~~ll~G~~G~GKt~l-a~~la~~l 55 (317)
..++.+|+ ++++.+|+|+|||+. ...+...+
T Consensus 15 ~~~l~~~~--~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 15 PNMLRKRQ--MTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp CGGGSTTC--EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred HHHHhcCC--cEEEECCCCCCHHHHHHHHHHHHH
Confidence 44566665 799999999999997 44444443
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.59 E-value=0.039 Score=42.77 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 429
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.57 E-value=0.0077 Score=50.84 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.+.|.|++|+||||+++.++.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999994
No 430
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.56 E-value=0.018 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999998864
No 431
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.56 E-value=0.074 Score=42.32 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..+++.|++|+|||+++..+...-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998753
No 432
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.55 E-value=0.018 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~ 53 (317)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998863
No 433
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.55 E-value=0.014 Score=55.12 Aligned_cols=39 Identities=36% Similarity=0.505 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
++...+.+...+.+ +..++.||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 55566666666642 3689999999999999888887764
No 434
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.55 E-value=0.026 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999874
No 435
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.54 E-value=0.043 Score=54.61 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=19.2
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHH
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLAR 53 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~ 53 (317)
+.+|+ ++++.||+|+|||.++...+.
T Consensus 51 il~g~--~vlv~apTGsGKTlv~~~~i~ 76 (997)
T 4a4z_A 51 LEQGD--SVFVAAHTSAGKTVVAEYAIA 76 (997)
T ss_dssp HHTTC--EEEEECCTTSCSHHHHHHHHH
T ss_pred HHcCC--CEEEEECCCCcHHHHHHHHHH
Confidence 44555 799999999999986544443
No 436
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.53 E-value=0.028 Score=43.59 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 437
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.49 E-value=0.013 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.|++|+||||+++.+++.+.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999874
No 438
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.047 Score=54.98 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.5
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHH
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~ 54 (317)
+.+|. ++++.||.|+|||.++...+..
T Consensus 196 i~~g~--dvLV~ApTGSGKTlva~l~i~~ 222 (1108)
T 3l9o_A 196 IDRGE--SVLVSAHTSAGKTVVAEYAIAQ 222 (1108)
T ss_dssp HTTTC--CEEEECCSSSHHHHHHHHHHHH
T ss_pred HHcCC--CEEEECCCCCChHHHHHHHHHH
Confidence 45555 6999999999999987554443
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.47 E-value=0.0082 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.++|.|++|+||||++..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4999999999999999999874
No 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.47 E-value=0.0045 Score=48.08 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+.|.|++|+||||+++.++..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999998753
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.46 E-value=0.0081 Score=52.48 Aligned_cols=24 Identities=46% Similarity=0.494 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Q psy879 34 IIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
+.|.||+|+||||+++.++..+..
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhccc
Confidence 899999999999999999998753
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.46 E-value=0.0045 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~ 54 (317)
++++|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999987754
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.45 E-value=0.0058 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.+.||+|+||||+++.+++.+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999763
No 444
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.44 E-value=0.077 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||++++.+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3999999999999999999875
No 445
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.44 E-value=0.0075 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
-+.|.|++|+||||.++.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999884
No 446
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.44 E-value=0.014 Score=51.89 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHhcCC------------------CceEEEECCCCCCHHHHHHHHHHHH
Q psy879 15 NEDTVERLKVFSSSGN------------------VPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~------------------~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
...+++.+.-.+..|. ...+.|.||+|+||||+.++++..+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456666666666666 1258999999999999999999854
No 447
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.43 E-value=0.03 Score=42.42 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||++++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.42 E-value=0.0095 Score=48.01 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.|.|++|+||||+++.+++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999985
No 449
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.04 Score=42.40 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999865
No 450
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.41 E-value=0.011 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
+-|.|+||+||||.++.+++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999986
No 451
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.095 Score=52.24 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Q psy879 16 EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLA 52 (317)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la 52 (317)
+...+.+.. +.+|. ++++.+|.|+|||.++....
T Consensus 89 ~~Q~eai~~-l~~g~--~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 89 PFQDTAISC-IDRGE--SVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp HHHHHHHHH-HHHTC--EEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHH-HHcCC--CEEEECCCCCChHHHHHHHH
Confidence 333334444 34455 79999999999999875433
No 452
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.39 E-value=0.036 Score=42.89 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~ 54 (317)
+++.|++|+|||+++..+...
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999865
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.39 E-value=0.12 Score=46.17 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=22.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGPS 59 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~~ 59 (317)
+.+.|++|+||||++..++..+....
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 88899999999999999999886443
No 454
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.029 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.|++|+|||++++.+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.38 E-value=0.032 Score=44.03 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999864
No 456
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.38 E-value=0.11 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 457
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.37 E-value=0.0065 Score=51.49 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=29.7
Q ss_pred ceeEEEEeCCCC-CCHHHHHHHHHH-hhhccCCceEEEEecCC
Q psy879 96 RHKIVILDEADS-MTDGAQQALRRT-MEIYSNTTRFALACNNS 136 (317)
Q Consensus 96 ~~~vliiDE~d~-l~~~~~~~ll~~-le~~~~~~~~il~~~~~ 136 (317)
+++++++||... |.+.....+.+. +........+|++|++.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~ 219 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 578999999985 677778888886 34433455677788764
No 458
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.37 E-value=0.018 Score=53.29 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 15 NEDTVERLKVFSS--SGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 15 ~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+++.+.+..... ......++|.|++|+||||+++.+++.+.
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 3556666666652 22222489999999999999999999874
No 459
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.36 E-value=0.033 Score=43.69 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~ 54 (317)
+++.|++|+|||+++..+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 460
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.34 E-value=0.083 Score=47.38 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.8
Q ss_pred eEEEECCCCCCHHHHH-HHHH
Q psy879 33 NIIISGPPGVGKTTTI-LCLA 52 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la-~~la 52 (317)
++++.||+|+|||..+ ..+.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 6999999999999986 4444
No 461
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.34 E-value=0.014 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||++++.+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999875
No 462
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.33 E-value=0.017 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 463
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.32 E-value=0.012 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~ 54 (317)
+.+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 464
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.32 E-value=0.093 Score=55.18 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLA 52 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la 52 (317)
.+.+...+.++. ++++.+|.|+|||.++....
T Consensus 932 ~q~~~~l~~~~~--nvlv~APTGSGKTliaelai 963 (1724)
T 4f92_B 932 TQVFNTVYNSDD--NVFVGAPTGSGKTICAEFAI 963 (1724)
T ss_dssp HHHHHHHHSCCS--CEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhcCCC--cEEEEeCCCCCchHHHHHHH
Confidence 334555556665 79999999999999886443
No 465
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.32 E-value=0.049 Score=49.34 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 14 GNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 14 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
-.+...+.+..++..+ ..++.||.|+|||..+..++..+
T Consensus 94 l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3455555666555542 59999999999999998888765
No 466
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.041 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 467
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.30 E-value=0.012 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
..+|+||+|+|||++..++.-.+.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3799999999999999999987754
No 468
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.30 E-value=0.0093 Score=54.10 Aligned_cols=25 Identities=52% Similarity=0.554 Sum_probs=22.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+.|.|++|+||||+++.++..+..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhh
Confidence 3899999999999999999998753
No 469
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.29 E-value=0.023 Score=55.17 Aligned_cols=40 Identities=35% Similarity=0.484 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 15 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
++...+.+...+.+ +..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45556666666542 36899999999999998888877653
No 470
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.26 E-value=0.19 Score=46.23 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 20 ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 20 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+.+..++ +|+ ++++.+|.|+|||..+...+...
T Consensus 11 ~~i~~~~-~~~--~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 11 ELALPAK-KGK--NTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp HHHHHHH-TTC--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHh-CCC--CEEEEeCCCChHHHHHHHHHHHH
Confidence 3344433 444 69999999999998876666443
No 471
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.26 E-value=0.026 Score=45.18 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3999999999999999999853
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.06 Score=42.15 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4999999999999999999874
No 473
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.21 E-value=0.18 Score=46.33 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+..++. |. ++++.+|.|+|||..+...+...
T Consensus 13 ~~~i~~~~~-~~--~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 13 IELAQPAIN-GK--NALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp HHHHHHHHT-TC--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CC--CEEEEcCCCChHHHHHHHHHHHH
Confidence 334444443 44 69999999999998876665443
No 474
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.20 E-value=0.012 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+.|++|+||||+++.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 475
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.20 E-value=0.0089 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.||+|+||||+++.++..+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999863
No 476
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.20 E-value=0.011 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q psy879 34 IIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l 55 (317)
+.+.|++|+||||+++.++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999864
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.19 E-value=0.013 Score=51.74 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.++|.||+|+|||+++..+++.+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 488999999999999999999873
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.012 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+.|.|++|+||||+++.+++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999873
No 479
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.16 E-value=0.015 Score=50.03 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
+.+.|++|+||||++..+|..+...
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999987543
No 480
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.14 E-value=0.13 Score=39.84 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy879 32 PNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 32 ~~~ll~G~~G~GKt~la~~la~~ 54 (317)
+.+++.|++|+|||+++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999998764
No 481
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.13 E-value=0.0054 Score=53.52 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=22.9
Q ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 27 SSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 27 ~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
..|. .+.|.||+|+||||+.+.++..+
T Consensus 29 ~~Ge--~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGE--RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTC--EEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 3444 58999999999999999999865
No 482
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.09 E-value=0.093 Score=49.92 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=28.8
Q ss_pred eeEEEEeCCCC-CCHHHHHHHHHHhhhcc-CCceEEEEecCCC
Q psy879 97 HKIVILDEADS-MTDGAQQALRRTMEIYS-NTTRFALACNNSE 137 (317)
Q Consensus 97 ~~vliiDE~d~-l~~~~~~~ll~~le~~~-~~~~~il~~~~~~ 137 (317)
++++++||.-. |.+.....+.+++.+.. ....+|+++++..
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57999999975 56677777777766543 2455778887754
No 483
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.042 Score=42.88 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999875
No 484
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.06 E-value=0.014 Score=47.11 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=22.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Q psy879 33 NIIISGPPGVGKTTTILCLARILLG 57 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~~ 57 (317)
.+.|.|++|+||||.++.+++.+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5899999999999999999999843
No 485
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.05 E-value=0.014 Score=50.85 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+++.+ --+..|. .+.|.||+|+||||+.+.++..+.
T Consensus 60 ~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 60 RAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 455555 4455565 699999999999999999999853
No 486
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.03 E-value=0.026 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=4.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998865
No 487
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.02 E-value=0.02 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.183 Sum_probs=24.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 31 VPNIIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 31 ~~~~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
.+|.++.||+|+|||++++.++..+...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~ 62 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQ 62 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 3579999999999999999999877543
No 488
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.97 E-value=0.04 Score=44.04 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999998753
No 489
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.021 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.96 E-value=0.048 Score=43.54 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHc
Q psy879 34 IIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~ 56 (317)
+.|.|+.|+||||.++.+++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999984
No 491
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.91 E-value=0.036 Score=52.16 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCceEEecCCCCcChHHHHHHHHHH----HhhcccCCC
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF----AQQKVTLPP 94 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~ 94 (317)
.+.+..++.... .+.+++|+.|.|||+++-.++..+... + .+.+.+......+.+..... .........
T Consensus 181 ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~~-----~-~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~ 253 (671)
T 2zpa_A 181 QQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAGR-----A-IVTAPAKASTDVLAQFAGEKFRFIAPDALLASD 253 (671)
T ss_dssp HHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSSC-----E-EEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSC
T ss_pred HHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHhC-----c-EEECCCHHHHHHHHHHhhCCeEEeCchhhhhCc
Confidence 334444444222 358999999999999999999987421 2 23333334444443322110 000000011
Q ss_pred CceeEEEEeCCCCCCHHHHHHHH
Q psy879 95 GRHKIVILDEADSMTDGAQQALR 117 (317)
Q Consensus 95 ~~~~vliiDE~d~l~~~~~~~ll 117 (317)
....++||||+-.+.......|+
T Consensus 254 ~~~dlliVDEAAaIp~pll~~ll 276 (671)
T 2zpa_A 254 EQADWLVVDEAAAIPAPLLHQLV 276 (671)
T ss_dssp CCCSEEEEETGGGSCHHHHHHHH
T ss_pred ccCCEEEEEchhcCCHHHHHHHH
Confidence 34679999999999875444443
No 492
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.048 Score=43.28 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 493
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.87 E-value=0.2 Score=48.69 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 19 VERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 19 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+..++ +|+ ++++.+|.|+|||..+...+...
T Consensus 254 ~~~i~~~l-~~~--~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 254 IELAQPAI-NGK--NALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp HHHHHHHH-TTC--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCC--CEEEEeCCCChHHHHHHHHHHHH
Confidence 33444443 444 69999999999999877666444
No 494
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.87 E-value=0.19 Score=40.15 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy879 31 VPNIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 31 ~~~~ll~G~~G~GKt~la~~la~~ 54 (317)
.+.+++.|++|+|||+++..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346999999999999999998764
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.85 E-value=0.025 Score=48.26 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARI 54 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~ 54 (317)
.++|.|++|+||||++..+...
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 5999999999999999999874
No 496
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.85 E-value=0.019 Score=51.63 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+++.+ --+..|. .+.|.||+|+||||+++.++...
T Consensus 146 ~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 146 RAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 455555 4455565 69999999999999999999985
No 497
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.018 Score=52.16 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.6
Q ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHH
Q psy879 26 SSSGNVPNIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 26 l~~~~~~~~ll~G~~G~GKt~la~~la~~l 55 (317)
+..|. .+.+.||+|+||||+++.++..+
T Consensus 135 i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGP--RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCC--CEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCC--EEEEECCCCCCHHHHHHHHhCcc
Confidence 44444 69999999999999999999865
No 498
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.84 E-value=0.022 Score=45.29 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Q psy879 34 IIISGPPGVGKTTTILCLARILLGP 58 (317)
Q Consensus 34 ~ll~G~~G~GKt~la~~la~~l~~~ 58 (317)
+.|.|+.|+||||.++.+++.|...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5688999999999999999998644
No 499
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.83 E-value=0.018 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.135 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHH
Q psy879 33 NIIISGPPGVGKTTTILCLARIL 55 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l 55 (317)
.+.+.|++|||||++++.+|+.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999987
No 500
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.81 E-value=0.017 Score=53.11 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Q psy879 33 NIIISGPPGVGKTTTILCLARILL 56 (317)
Q Consensus 33 ~~ll~G~~G~GKt~la~~la~~l~ 56 (317)
.+++.|.||+||||+++.+++.+.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999873
Done!