Your job contains 1 sequence.
>psy879
IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF
KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM
EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL
EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS
YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLS
GLLARLCIVGSKNKKTD
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy879
(317 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 1177 1.4e-119 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 1170 7.7e-119 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 1167 1.6e-118 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 1163 4.2e-118 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 1161 6.9e-118 1
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 1154 3.8e-117 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 1152 6.2e-117 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 1133 6.4e-115 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 1099 2.6e-111 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 1092 1.4e-110 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 971 9.4e-98 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 965 4.1e-97 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 949 2.0e-95 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 938 3.0e-94 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 934 7.8e-94 1
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 905 9.3e-91 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 745 8.4e-74 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 745 8.4e-74 1
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 668 1.2e-65 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 546 1.0e-52 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 545 1.3e-52 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 545 1.3e-52 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 543 2.1e-52 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 541 3.5e-52 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 537 9.2e-52 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 532 3.1e-51 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 525 1.7e-50 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 525 1.7e-50 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 515 2.0e-49 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 511 5.2e-49 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 509 8.5e-49 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 508 1.1e-48 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 503 3.7e-48 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 502 4.7e-48 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 498 1.2e-47 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 494 3.3e-47 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 494 3.3e-47 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 484 3.8e-46 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 484 3.8e-46 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 482 6.2e-46 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 473 5.6e-45 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 471 9.1e-45 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 470 1.2e-44 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 470 1.2e-44 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 469 1.5e-44 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 468 1.9e-44 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 458 2.2e-43 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 453 7.3e-43 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 452 9.3e-43 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 440 1.7e-41 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 440 1.7e-41 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 434 7.5e-41 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 429 2.6e-40 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 426 5.3e-40 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 424 8.7e-40 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 406 7.0e-38 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 369 2.7e-36 2
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 369 2.7e-36 2
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 390 3.5e-36 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 389 4.4e-36 1
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 288 2.2e-25 1
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 179 2.7e-20 2
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 182 4.7e-20 2
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 198 6.2e-20 2
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 198 6.2e-20 2
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 185 9.9e-20 2
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 181 1.0e-19 2
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 183 1.8e-19 2
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 186 3.6e-19 2
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 181 5.4e-19 2
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 179 1.6e-18 2
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 179 1.6e-18 2
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 177 1.9e-18 2
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 162 8.1e-18 2
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 162 8.1e-18 2
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 169 8.1e-18 2
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 166 6.8e-17 2
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 168 8.1e-17 2
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 152 8.2e-17 2
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 212 7.2e-16 1
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 198 8.5e-16 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 160 2.7e-15 2
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 209 3.9e-15 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 209 3.9e-15 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 153 1.6e-14 2
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 179 1.7e-14 2
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 148 3.5e-14 2
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 166 2.0e-13 2
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 141 1.1e-12 2
UNIPROTKB|P06710 - symbol:dnaX species:83333 "Escherichia... 143 2.8e-12 2
UNIPROTKB|O83970 - symbol:TP_1005 "DNA polymerase III, su... 147 5.8e-12 2
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 182 2.1e-11 1
GENEDB_PFALCIPARUM|PFB0895c - symbol:PFB0895c "replicatio... 166 2.2e-11 2
UNIPROTKB|O96271 - symbol:PFB0895c "Replication factor C ... 166 2.2e-11 2
TAIR|locus:2012497 - symbol:AT1G14460 species:3702 "Arabi... 145 2.8e-11 2
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 174 6.9e-11 1
UNIPROTKB|Q47XQ9 - symbol:dnaX "DNA polymerase III, gamma... 154 9.6e-11 2
TIGR_CMR|CPS_3744 - symbol:CPS_3744 "DNA polymerase III, ... 154 9.6e-11 2
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 121 1.3e-10 2
TAIR|locus:2032432 - symbol:AT1G24290 species:3702 "Arabi... 174 1.6e-10 1
WARNING: Descriptions of 62 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 218/295 (73%), Positives = 261/295 (88%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++VGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 44 VEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 103
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 104 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 163
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD+Q+L+++++I EKE++ +T+DGL
Sbjct: 164 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGL 223
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +C+ N+ ++
Sbjct: 224 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEA 283
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
YKI+ HL++LGY+PED+IGNIFRV KT +PE LKL I+EIG H++I+EGVNS
Sbjct: 284 YKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNS 338
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 219/295 (74%), Positives = 259/295 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+LS+++ + EKE + +T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNS
Sbjct: 274 YKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNS 328
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 218/295 (73%), Positives = 259/295 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 34 VEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 93
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 94 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 153
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 154 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGL 213
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG++ +E VFKVCDEPHPL VKEM+ +CV+ N+ ++
Sbjct: 214 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 273
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
YKI+ HL+ LGY+PED+IGNIFRV KT + E LKL I+EIG H++++EGVNS
Sbjct: 274 YKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNS 328
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 219/295 (74%), Positives = 257/295 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDA+LELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 99 KDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 158
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGL
Sbjct: 159 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 218
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 219 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 278
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNS
Sbjct: 279 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 333
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 218/295 (73%), Positives = 257/295 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTD Q+L++++ + EKE + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG + +E VFKVCDEPHPL VKEM+ +CV ++ ++
Sbjct: 217 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNS
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 216/295 (73%), Positives = 257/295 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 49 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 108
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 109 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 168
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 169 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGL 228
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNN+QST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 229 EAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 288
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++I+EGVNS
Sbjct: 289 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 343
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 218/295 (73%), Positives = 255/295 (86%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNE+TV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 69 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAM 128
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 129 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 188
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY+KL D Q++ ++ E+ EKEN+ TNDGL
Sbjct: 189 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGL 248
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQST++GFG++ +E VFKVCDEPHPL VK ML +CV N+ ++
Sbjct: 249 EAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEA 308
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
YKII L+ LGY+PEDIIGNIFRV KT + E LKL I+EIG H++++EGVNS
Sbjct: 309 YKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNS 363
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 219/313 (69%), Positives = 257/313 (82%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP F +IVGNEDTV RL VF++ GN PNIII+GPPGVGKTTTI CLARILLG S+
Sbjct: 19 IEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNASN+RGID VRNKIKMFAQQKVTLP GRHKIVILDEADSMT+GAQQALRRTM
Sbjct: 79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS+TTRFALACN SEKIIEPIQSRCAMLR+ KL+DAQ+L+K+IE+ + E +++T DGL
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAIVFTAQGDMRQ LNNLQST GFG +TAE VFKVCDEPHP ++EM+ +C ++ +
Sbjct: 199 EAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSXXXXX 300
YKI+ L+KLGY+PEDII NIFRV K ++I E LKL I+EIG H++I +G+NS
Sbjct: 259 YKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLT 318
Query: 301 XXXXXXCIVGSKN 313
CI K+
Sbjct: 319 ALLAKLCIAAEKH 331
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 206/280 (73%), Positives = 244/280 (87%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP ++IVGNEDTV RL+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 96
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
KDAVLELNASNDRGID VRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 97 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 156
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFALACN S+KIIEPIQSRCA+LRY KL+DAQ+L++++ + E+E + +T+DGL
Sbjct: 157 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGL 216
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EA++FTAQGDMRQALNN+QST +GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++
Sbjct: 217 EAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 276
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQ 280
YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+
Sbjct: 277 YKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIK 316
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
Identities = 206/274 (75%), Positives = 240/274 (87%)
Query: 22 LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81
L+VF+ GNVPNIII+GPPG GKTT+ILCLAR LLGP+ KDAVLELNASNDRGID VRNK
Sbjct: 1 LQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNK 60
Query: 82 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIE 141
IKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTMEIYS TTRFALACN S+KIIE
Sbjct: 61 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE 120
Query: 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQST 201
PIQSRCA+LRY KLTDAQ+L++++ + EKE + +T+DGLEAI+FTAQGDMRQALNNLQST
Sbjct: 121 PIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQST 180
Query: 202 HNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNI 261
+GFG + +E VFKVCDEPHPL VKEM+ +CV N+ ++YKI+ HL+ LGY+PEDIIGNI
Sbjct: 181 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDEAYKILAHLWHLGYSPEDIIGNI 240
Query: 262 FRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
FRV KT + E LKL I+EIG H+R++EGVNS
Sbjct: 241 FRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNS 274
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 182/296 (61%), Positives = 238/296 (80%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+T++RLKV + GN+P+++ISG PG+GKTT+ILCLA LLGP++
Sbjct: 24 VEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAY 83
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+ VLELNAS++RGID VRN+IK FAQ+KV LPPGRHKI+ILDEADSMT GAQQALRRTM
Sbjct: 84 KEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTM 143
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSNTTRFALACN S KIIEPIQSRCA+LRY++LTD Q+L +++ IC+ E +++T+DGL
Sbjct: 144 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGL 203
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ TA+GDMRQA+NNLQST GFG V E VF+V D+P P+A+ ML C GN+ +
Sbjct: 204 AALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDVA 263
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNS 295
+ + ++ LG++ DI+ N+FRV KT+D IPE +L +++EIG H+ I EGV +
Sbjct: 264 LEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQT 319
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 184/295 (62%), Positives = 230/295 (77%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNED V RL+V + GN+PN+I+SGPPG GKTT+IL LA LLG ++
Sbjct: 18 VEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTNY 77
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS+DRGID VRNKIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRT+
Sbjct: 78 KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTI 137
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYSN+TRFALACN S KIIEPIQSRCA++R+++L+D Q+L +++ + E + + +GL
Sbjct: 138 EIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGL 197
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA GDMRQALNNLQ+T +GF V E VFKVCD+PHPL VK ++ N +E +
Sbjct: 198 EAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLESKFDIA 257
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNS 295
+ LY LGY+P DII +FR+ K D+ E LKL ++E G H+RI +GV S
Sbjct: 258 CDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 312
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 182/315 (57%), Positives = 237/315 (75%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP DIVGNE+TV RL+ S GN+PNIIISGPPG GKT++ILCLAR LLG ++
Sbjct: 23 VEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGANY 82
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AV ELNAS+DR +D VR+KIK FA +KVTLP GRHKI+ILDE DSMT GAQQALRR M
Sbjct: 83 KEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQQALRRIM 142
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
EIYS TTRFA ACN S KIIEPIQSRCA+LR+ +L+D+Q+L+++ E+ + E + +T+DGL
Sbjct: 143 EIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDGL 202
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
AI+FTA+GDMRQALNNLQ+TH+GFG + AE V KVCD+PHPL +K+++ C + + K++
Sbjct: 203 AAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDFKEA 262
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVHLRISEGVNSXXXX 299
Y + L+ GY+ DII +F + K+ + IPE KL ++EIG +LR + GVN+
Sbjct: 263 YPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTLVQL 322
Query: 300 XXXXXXXCIVGSKNK 314
C+V K K
Sbjct: 323 TGLLSKLCLVSIKMK 337
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 183/315 (58%), Positives = 235/315 (74%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ +DIVGNE+ VERLKV GNVPNI++SGPPG GKTT++ LAR LLG
Sbjct: 13 VEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKV 72
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K+AVLELNAS++RGID VR++IK FAQ KVTLP GRHKI+ILDEADSMTDGAQQALRRTM
Sbjct: 73 KEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTM 132
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+Y+ TTRFALACN SEKIIEPIQSRCA+LRY KL+ QLL++V E+ + E +++ + GL
Sbjct: 133 EMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGL 192
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTAQGDMRQALNNLQ+T N + V E V KVCDEPHP + +ML C + ++
Sbjct: 193 EAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTDRKFFEA 252
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLD----IPEPLKLSIIQEIGNVHLRISEGVNSX 296
KIIH ++LG++ +DI+ +FRV KT++ + E L++ I++I H+RI +G+ S
Sbjct: 253 SKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGLTSK 312
Query: 297 XXXXXXXXXXCIVGS 311
C V +
Sbjct: 313 LQLSRLIADLCRVSA 327
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 182/297 (61%), Positives = 236/297 (79%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 131
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QSRCA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 132 ELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 191
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D PHPL VK+MLL N++DS
Sbjct: 192 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLL---ASNLEDS 248
Query: 241 YKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGVNS 295
+I+ L+K GY+ DI+ FRV K L + E ++L +I+EIG H+RI EGV +
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGT 305
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 174/296 (58%), Positives = 232/296 (78%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ DIVGNE+TVERLK+ GN+PN+IISG PG+GKTT+I CLA LLG
Sbjct: 12 VEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGDEH 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ A +ELNAS+DRGID VRNKIK FAQ K++LPPGR KI+ILDEADSMT GAQQALRRT
Sbjct: 72 YHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQALRRT 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+EIYSNTTRFA ACN S KIIEP+QSRCA+LRYN+L+D ++L++++EI + E++ + +G
Sbjct: 132 IEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVKYNTEG 191
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
L+A++FTA+GDMRQA+NNLQST GFG V VFK+ D+PHPL ++ +LL+C++ D
Sbjct: 192 LQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQSILLSCLKDKDID 251
Query: 240 -SYKIIHHLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLSIIQEIGNVHLRISEGV 293
+ ++ L+ GY+ DI+ + F+VAKT+ +I E +L +I+EIG H+R+ EGV
Sbjct: 252 KALGLLDGLWYKGYSAIDIVTSTFKVAKTIPNISEQKRLDVIKEIGFAHMRVLEGV 307
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 142/284 (50%), Positives = 205/284 (72%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VGN + LK +SGN+PN++++G PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KL+D Q+L ++++IC+ ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ F A GD+R+A+N LQST+ G + E V +CD P P ++ +L +CV K +
Sbjct: 199 DALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIG 283
+ I + + K G+ P DI V + +I E +++ ++ IG
Sbjct: 259 HDIAYSMIKEGHTPYDISLTSSNVLRRFNIGSEVIQIEFLK-IG 301
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 142/284 (50%), Positives = 205/284 (72%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
IEKYRP+ ++VGN + LK +SGN+PN++++G PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQA 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
K AVLELNAS+DRGI+ +R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YS+TTRFALACN SEKII+ +QSRCA++RY KL+D Q+L ++++IC+ ENI +T+DGL
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGL 198
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
+A+ F A GD+R+A+N LQST+ G + E V +CD P P ++ +L +CV K +
Sbjct: 199 DALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKA 258
Query: 241 YKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLSIIQEIG 283
+ I + + K G+ P DI V + +I E +++ ++ IG
Sbjct: 259 HDIAYSMIKEGHTPYDISLTSSNVLRRFNIGSEVIQIEFLK-IG 301
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 125/177 (70%), Positives = 151/177 (85%)
Query: 108 MTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
MTDGAQQALRRTMEIYS TTRFALACN S+KIIEPIQSRCA+LRY KLTDAQ+L++++ +
Sbjct: 2 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 61
Query: 168 CEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKE 227
EKE + +T+DGLEAI+FTAQGDMRQALNNLQST +GFG + +E VFKVCDEPHPL VKE
Sbjct: 62 IEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKE 121
Query: 228 MLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGN 284
M+ +CV N+ ++YKI+ HL+ LGY+PEDIIGNIFRV KT + E LKL I+E+ N
Sbjct: 122 MIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKELPN 178
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 114/296 (38%), Positives = 175/296 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+YK I L L G A DI+ + +D P +++ ++ ++ ++ R+S G +
Sbjct: 261 AYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTS 316
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 114/296 (38%), Positives = 175/296 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + ++EN+ + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+YK I L L G A DI+ + +D P +++ ++ ++ ++ R+S G +
Sbjct: 261 AYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRLSVGTS 316
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 118/298 (39%), Positives = 177/298 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL-GPS 59
+EKYRPQT D++ ++D + ++ F S +P+++ GPPG GKT+TIL AR L
Sbjct: 17 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDKE 76
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 77 FNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 135
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ L+ Q++ ++ + ++E+I T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLA--VKEMLLNCVEGNM 237
++AIV + GDMR++LN LQSTH +G VT E V+ C HPL + +L + +
Sbjct: 196 MKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVY-TCTG-HPLRSDIANILDWALNKDF 253
Query: 238 KDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+Y I L L G A DI+ + + +D P +++ ++ ++ ++ R++ G +
Sbjct: 254 TTAYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADIEYRLASGTS 311
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 114/296 (38%), Positives = 173/296 (58%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 37 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 96
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 97 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 155
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 156 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 215
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 216 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 275
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N
Sbjct: 276 AYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 331
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 113/296 (38%), Positives = 174/296 (58%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F + +P++++ GPPG GKT+TIL C ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 261
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N
Sbjct: 262 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 317
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 114/296 (38%), Positives = 173/296 (58%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + +E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
+Y+ I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N
Sbjct: 261 AYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTN 316
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 115/303 (37%), Positives = 176/303 (58%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDL 95
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQ 113
++ VLELNAS++RGI VR K+K FAQ V T P G+ KI+ILDEADSMT AQ
Sbjct: 96 YRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQ 155
Query: 114 QALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENI 173
ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L + +++EIC KEN+
Sbjct: 156 AALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENL 215
Query: 174 SHTNDGLEAIVFTAQGDMRQALNNLQSTH--NGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+T +G++A+V ++GD+R+A+ LQS N +T + + ++ P ++ +L
Sbjct: 216 KYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKVIQSLLHI 275
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
C +G + + + GYA +++ + V + + K I +++ V +++
Sbjct: 276 CYKGTFEKLEVAVKDMIDQGYAATNLLNQLHDVIIEEQLSDKQKSVITEKMAEVDKCLAD 335
Query: 292 GVN 294
G +
Sbjct: 336 GAD 338
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 109/300 (36%), Positives = 171/300 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + +K F G +P++++ GPPG GKT+TIL + + L G
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKR 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI+ +R++IK FA+ K T K++ILDEAD MT AQ A+R
Sbjct: 76 SSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMR 135
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R+ L + +K ++I + EN++ T
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTE 195
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
G+++++ GDMR+ LN LQ ++ + + D P P K++L +G
Sbjct: 196 GGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFTKG 255
Query: 236 NMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
++K+SY+ + +L Y GY+ +DI+ ++ T D P+ +++ G + R S G +
Sbjct: 256 SIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGAS 315
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 109/300 (36%), Positives = 171/300 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP +DI+ +E + +K F G +P++++ GPPG GKT+TIL + + L G
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKR 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQALR 117
VLELNAS+DRGI+ +R++IK FA+ K T K++ILDEAD MT AQ A+R
Sbjct: 76 SSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMR 135
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
R ME Y+ RF L CN KI IQSRC R+ L + +K ++I + EN++ T
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTE 195
Query: 178 DGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAE--YVFKVCDEPHPLAVKEMLLNCVEG 235
G+++++ GDMR+ LN LQ ++ + + D P P K++L +G
Sbjct: 196 GGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFTKG 255
Query: 236 NMKDSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
++K+SY+ + +L Y GY+ +DI+ ++ T D P+ +++ G + R S G +
Sbjct: 256 SIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGAS 315
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 107/293 (36%), Positives = 166/293 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP D+V ++D + L+ F SS VP+++ GPPG GKT+TIL AR + GP++
Sbjct: 26 VEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNY 85
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
++ ++ELNAS+DRGID VR +IK FA + K++ILDEAD+MT AQ ALRR +
Sbjct: 86 RNQLMELNASDDRGIDAVREQIKNFASTRQIFA-STFKMIILDEADAMTLAAQNALRRVI 144
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ RF + CN KI IQSRC R+ L ++ V + + E+ + D
Sbjct: 145 EKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAK 204
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDS 240
A++ ++GDMR+ALN LQ+ H + H+ ++ PHP + L + + +
Sbjct: 205 MAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIA 264
Query: 241 YKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+ I + + G A +DI+ IF L+I K+ I+ ++ + R+S G
Sbjct: 265 FNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFG 317
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 113/295 (38%), Positives = 173/295 (58%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP D++ +E+ + + F S +P+++ GPPG GKT+TIL AR L P
Sbjct: 14 VEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQ 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
FK VLELNAS+DRGI VR +I FA + T+ K++ILDEAD+MT+ AQ ALRR
Sbjct: 74 FKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRI 132
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y++ RF + CN KII +QSRC R+ L+ Q++ ++ +I E E + T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDG 192
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN-MK 238
A++ A+GDMR+ LN LQST F V + V+ P ++++L + G+ ++
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLE 252
Query: 239 DSYKIIHHL-YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
DS+K + Y G A EDII + L++P + +I ++ + R+++G
Sbjct: 253 DSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKG 307
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 116/305 (38%), Positives = 171/305 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP ++V +E V+ L F + +P+++ GPPG GKTTT+L AR + P+
Sbjct: 32 VEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTK 91
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK------VTLPPGR--HKIVILDEADSMTDG 111
VLELNAS++RGID VRN I FAQ K + G K+VILDEAD+MT
Sbjct: 92 MASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKD 151
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRR +E Y++ RF + CN I+ IQSRC R+ L ++ ++ I E E
Sbjct: 152 AQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETE 211
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+ T DG +A++ ++GDMR +N LQST F V+ V++ +P P +KE++
Sbjct: 212 QLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKT 271
Query: 232 CVEGNMKDSYKIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ K I L++ GYA +D+I ++ TLDIP+ +II +G V +S
Sbjct: 272 LLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEENLS 331
Query: 291 EGVNS 295
G ++
Sbjct: 332 TGCSN 336
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 117/303 (38%), Positives = 172/303 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+ KYRP+T D+ ED + LK ++GN+P+++ GPPG GKT+TIL +A + GP
Sbjct: 13 VAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPEL 72
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKV------TLPPGR-HKIVILDEADSMTDGA 112
K VLELNAS++RGI+ VR KIK FA V T PG K++ILDEADSMT A
Sbjct: 73 MKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDA 132
Query: 113 QQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN 172
Q ALRRT+E S TTRF L CN +II+P+ SRCA R+ L + ++ I ++E
Sbjct: 133 QAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEG 192
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGH-VTAEYVFKVCDEPHPLAVKEMLLN 231
I +AI + GDMR+A+ LQS F + ++ + ++ + P +K+ L++
Sbjct: 193 IKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQ-LVD 251
Query: 232 CVEGNMKDSYK-IIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLRI 289
C + N D + ++ + GY +I +F V T D+ + K I +IGNV +
Sbjct: 252 CCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNL 311
Query: 290 SEG 292
+G
Sbjct: 312 IDG 314
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 108/263 (41%), Positives = 156/263 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A++ + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNI 261
+Y+ I L L G A DI+ I
Sbjct: 261 AYRNIMELKTLKGLALHDILTEI 283
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 110/304 (36%), Positives = 178/304 (58%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ+ D+ + D ++ + ++ +P++++ GPPG GKT+TIL +AR L GP +
Sbjct: 42 VEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKY 101
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQ-QKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ +LELNAS+DRGID VR +I+ FA Q +L K+V+LDEAD+MT AQ ALRR
Sbjct: 102 RNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRV 161
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E Y+ +TRFAL N+ KII +QSRC R+ L + ++ + E E + ++ G
Sbjct: 162 IEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCG 221
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDE--------PHPLAVKEMLLN 231
L A+V + GDMR+ALN LQSTH +T E ++ +E P P ++++
Sbjct: 222 LAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHW 281
Query: 232 CVEGNMKDSYKIIHHLY-KLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRIS 290
+ + YK + + + G A DI+ I + +P +++ +I ++ ++ R+S
Sbjct: 282 LLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLS 341
Query: 291 EGVN 294
G N
Sbjct: 342 FGCN 345
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 108/263 (41%), Positives = 156/263 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTIL-CLARILLGPS 59
+EKYRPQT +D++ ++D + ++ F S +P++++ GPPG GKT+TIL C ++
Sbjct: 22 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F VLELNAS+DRGID VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 82 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 140
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E ++ TRF L CN KII +QSRC R+ LT ++ ++ + +E + + DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDG 200
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++A+V + GDMR+ALN LQST+ FG VT E V+ P + +L + +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 260
Query: 240 SYKIIHHLYKL-GYAPEDIIGNI 261
+Y+ I L L G A DI+ I
Sbjct: 261 AYRNIMELKTLKGLALHDILTEI 283
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 112/306 (36%), Positives = 172/306 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ + PP KIVILDEADSMT
Sbjct: 99 FRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D +++++ EKE
Sbjct: 157 AQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEML 229
N+ T++ + +V + GD+R+A+ LQS G +T + V ++ + +L
Sbjct: 217 NVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLL 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + + +L GYA ++ + V ++ D + K I++++ V
Sbjct: 277 SACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKC 336
Query: 289 ISEGVN 294
+++G +
Sbjct: 337 LADGAD 342
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 112/306 (36%), Positives = 172/306 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 98
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI +R K+K FAQ + PP KIVILDEADSMT
Sbjct: 99 FRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPP--FKIVILDEADSMTSA 156
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D +++++ EKE
Sbjct: 157 AQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKE 216
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG--HVTAEYVFKVCDEPHPLAVKEML 229
N+ T++ + +V + GD+R+A+ LQS G +T + V ++ + +L
Sbjct: 217 NVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLL 276
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFR-VAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ + + +L GYA ++ + V ++ D + K I++++ V
Sbjct: 277 SACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKC 336
Query: 289 ISEGVN 294
+++G +
Sbjct: 337 LADGAD 342
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 107/299 (35%), Positives = 170/299 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D++ +ED + + + +P+++ GPPG GKT+TI +AR L G ++
Sbjct: 27 VEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDNY 86
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQ----KVTLPPGRHKIVILDEADSMTDGAQQAL 116
VLELNAS+DRGID VR +IK FA T+P +K++ILDEADSMT+ AQ AL
Sbjct: 87 SRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVP---YKLIILDEADSMTNIAQTAL 143
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RR +E Y+ TTRF + CN KII +QSRC R++ L ++ EI EKEN+
Sbjct: 144 RRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVD 203
Query: 177 NDGLEAIVFTAQGDMRQALNNLQSTHNGF--GHVTAEYVFKVCDEPHPLAVKEMLLNCVE 234
+ + A++ GDMR+ LN LQS ++T E ++K P P ++ M+ +
Sbjct: 204 SKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLLN 263
Query: 235 GNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
+ +++++ I L K G + DII + + +D+ + ++ + ++ +S G
Sbjct: 264 SDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIG 322
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 114/306 (37%), Positives = 175/306 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ D+V + V L+ G++PN+++ GPPG GKT+TIL +R + G F
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMF 92
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTL--PPGR----HKIVILDEADSMTDGAQQ 114
KD +LELNAS++RGI+ VR KIK F+Q + P G+ KI+ILDEADSMT AQ
Sbjct: 93 KDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQS 152
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME S +TRF L CN +II PI SRC+ R+ L + +++ ++ ICE E +
Sbjct: 153 ALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVK 212
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHV--TAEYVFKVCDEPHPLAVKEMLL 230
+D ++IV + GD+R+A+ LQS + G H+ TA+ +F++ +++ L
Sbjct: 213 IEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTAD-LFEMSGVIPEYYLEDYLE 271
Query: 231 NCVEGNMKDSYKIIHHL----YKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVH 286
C GN + + + + Y +G E + I + +P K +I ++G
Sbjct: 272 VCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHP---GLNDPQKATICDKLGECC 328
Query: 287 LRISEG 292
R+ +G
Sbjct: 329 FRLQDG 334
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 111/305 (36%), Positives = 170/305 (55%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRI 289
C G+ ++ L G+A ++ + V ++ + K I +++ V +
Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCL 338
Query: 290 SEGVN 294
++G +
Sbjct: 339 ADGAD 343
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 112/292 (38%), Positives = 161/292 (55%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 40 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 99
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 100 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 157
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 158 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 217
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEML 229
++ +N+G+ +V ++GD+R+A+ LQS G +T + + + + +
Sbjct: 218 HVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGIF 277
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQE 281
C G+ ++ L G+A ++ V D + SII E
Sbjct: 278 AACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKSIITE 329
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 112/308 (36%), Positives = 169/308 (54%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT----------LPPGRHKIVILDEADSMT 109
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPP--FKIVILDEADSMT 158
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +
Sbjct: 159 SAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAD 218
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKE 227
KE++ +++G+ +V ++GD+R+A+ LQS G VT + + + +
Sbjct: 219 KEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDG 278
Query: 228 MLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQEIGNVH 286
+L C G+ ++ L G+A + + V D + + K I +++
Sbjct: 279 VLAACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEAD 338
Query: 287 LRISEGVN 294
+++G +
Sbjct: 339 KCLADGAD 346
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 111/261 (42%), Positives = 154/261 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVC----DEPHPLA- 224
N+ +++G+ +V ++GD+R+A+ LQS G +T + + + DE H
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGDLIDEGHAATQ 278
Query: 225 -VKEMLLNCVEGNMKDSYKII 244
V ++ VE N+ D K I
Sbjct: 279 LVNQLHDVVVENNLSDKQKSI 299
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 109/306 (35%), Positives = 172/306 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ ++ + +V ++GD+R+A+ LQS G ++ + + + ++ ++
Sbjct: 219 NVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGIV 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ +L G+A ++ + + + ++ + K I +++ V
Sbjct: 279 TACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEVDKC 338
Query: 289 ISEGVN 294
+++G +
Sbjct: 339 LADGAD 344
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 97/301 (32%), Positives = 173/301 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ G + + ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRVI 134
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + SRC R+ L + ++ + E + + +
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGH-----VTAEYVFKVCDEPHPLAVKEMLLNCVEG 235
+A++ + GDMR+ LN LQS + ++ + +++ C P P +K +L + +E
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILED 254
Query: 236 NMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIP-EPLKLSIIQEIGNVHLRISEGV 293
+ ++ ++ + G A D+I I ++ + ++ E ++ ++ ++ ++ IS+G
Sbjct: 255 DWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGG 314
Query: 294 N 294
N
Sbjct: 315 N 315
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 109/306 (35%), Positives = 170/306 (55%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ ++ V L+ ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I EKE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHN--GFGHVTAEYVFKVCDEPHPLAVKEML 229
N+ N+ + +V ++GD+R+A+ LQS G V+ + + + + +
Sbjct: 219 NVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIF 278
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLR 288
C G+ ++ +L G+A ++ + + + ++ + K I +++ V
Sbjct: 279 TACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKC 338
Query: 289 ISEGVN 294
+++G +
Sbjct: 339 LADGAD 344
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 99/209 (47%), Positives = 135/209 (64%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I +KE
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKE 218
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQS 200
++ +N+G+ +V ++GD+R+A+ LQS
Sbjct: 219 HVKISNEGIAYLVQVSEGDLRKAITFLQS 247
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 111/305 (36%), Positives = 168/305 (55%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+E YRP+T + E TV+ LK S N+P+++ G PG GKT+TIL L+R L GP
Sbjct: 22 VELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQL 81
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVT-----LPPGRHKIVILDEADSMTDGAQQ 114
K VLELNAS++RGI +R K+K FA+ VT P KI+ILDEADSMT AQ
Sbjct: 82 MKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQA 141
Query: 115 ALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
ALRRTME Y+ TRF L CN +II+P+ SRC+ R+ L + ++ ++ I + +S
Sbjct: 142 ALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVS 201
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQST---HNGFGHVTAEYVFKVCDE-PHPLAVKEMLL 230
+ A+V + GDMR+A+ LQS H G +T V ++ P+ + ++ +L
Sbjct: 202 MEPGVVNALVECSGGDMRKAITFLQSAANLHQGTP-ITISSVEELAGAVPYNI-IRSLLD 259
Query: 231 NCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIGNVHLRI 289
N+ + + + GY+ I+ + V K + P+K I ++ V R+
Sbjct: 260 TAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRL 319
Query: 290 SEGVN 294
++G +
Sbjct: 320 NDGAD 324
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 113/314 (35%), Positives = 170/314 (54%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+ ++ + V LK S N+P+++ GPPG GKT+TIL L + L GP
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL 87
Query: 61 -KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH----------KIVILDEADSMT 109
K +LELNAS++RGI VR K+K FA+ V+ P +H KI+ILDEADSMT
Sbjct: 88 MKSRILELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L + + ++ I E
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 170 KENISHTNDG-LEAIVFTAQGDMRQALNNLQSTHNG---FG---HVTAEYVFKVCDE-PH 221
+EN+ +DG LE I+ + GD+R+ + LQS G G ++T+ V ++ PH
Sbjct: 207 QENVK-CDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 222 PLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLD-IPEPLKLSIIQ 280
+ + E++ G+ + K ++ K G++ ++ + T D K I
Sbjct: 266 DILI-EIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISW 324
Query: 281 EIGNVHLRISEGVN 294
+ R++ G N
Sbjct: 325 LLFTTDSRLNNGTN 338
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 115/306 (37%), Positives = 164/306 (53%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+ DIV + V LK + N+P++I GPPG GKT+ I LA L G +
Sbjct: 7 VEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKEN 66
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMF-----------AQQKVTLPPGRHKIVILDEADSM 108
+ VLELNAS+DRGI+ VR KIK + ++ K LP K+V+LDEAD M
Sbjct: 67 ISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSW--KLVVLDEADMM 124
Query: 109 TDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC 168
T+ AQ ALRR +EIYSN TRF L CN KI +PI SRC+ R+ + K++ IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 169 EKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEM 228
+ ENI +D LE I+ T +GD+R+A++ LQ +T V V P V ++
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDNIVYKI 244
Query: 229 LLNCVEGNMKDSYKIIHHLYKLGYAPEDIIG--NIFRVAKTLDIPEPLKLSIIQEIGNVH 286
+ C ++K K + + + G+ I N + V T + + LK I+ E+
Sbjct: 245 IDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNT-EYEDSLKYQILLELSRHD 303
Query: 287 LRISEG 292
R+ G
Sbjct: 304 YRLHCG 309
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 115/306 (37%), Positives = 164/306 (53%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP+ DIV + V LK + N+P++I GPPG GKT+ I LA L G +
Sbjct: 7 VEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKEN 66
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMF-----------AQQKVTLPPGRHKIVILDEADSM 108
+ VLELNAS+DRGI+ VR KIK + ++ K LP K+V+LDEAD M
Sbjct: 67 ISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSW--KLVVLDEADMM 124
Query: 109 TDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC 168
T+ AQ ALRR +EIYSN TRF L CN KI +PI SRC+ R+ + K++ IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 169 EKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEM 228
+ ENI +D LE I+ T +GD+R+A++ LQ +T V V P V ++
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDNIVYKI 244
Query: 229 LLNCVEGNMKDSYKIIHHLYKLGYAPEDIIG--NIFRVAKTLDIPEPLKLSIIQEIGNVH 286
+ C ++K K + + + G+ I N + V T + + LK I+ E+
Sbjct: 245 IDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNT-EYEDSLKYQILLELSRHD 303
Query: 287 LRISEG 292
R+ G
Sbjct: 304 YRLHCG 309
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 91/213 (42%), Positives = 135/213 (63%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+T D+ + T + L+ + N+P+++ GPPG GKT+TIL LA+ L GP+
Sbjct: 37 VEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPAL 96
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH------------KIVILDEADS 107
++ +LELNAS++RGI VR K+K FA+ +++ P G KI+ILDEADS
Sbjct: 97 YRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEADS 156
Query: 108 MTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
MT AQ ALRRTME YS TRF L CN +IIEP+ SRC+ R+ L ++ ++ +I
Sbjct: 157 MTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLAQI 216
Query: 168 CEKENISHTNDGLEAIVFTAQGDMRQALNNLQS 200
+ E +S N ++ ++ + GD+R+A+ LQS
Sbjct: 217 AQLEKLSLENGVVDKLISCSDGDLRRAITYLQS 249
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 99/317 (31%), Positives = 175/317 (55%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP + ++ G ++ V+ ++ F +G +P+++ GP G GKT+TI+ LA+ + G +
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDG 111
+K+ +LELNAS+DRGID VRN+IK FA + T + K++ILDEAD+MT+
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
AQ +LRR +E ++ RF + N S K+ + SRC R+ + + + ++ + KE
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG--------H----VTAEYVFKVCDE 219
N++ + + ++A++ + GDMR+ALN LQS G H + + ++
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGA 265
Query: 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL--GYAPEDIIGNIFRVAKTLDIPEPLKLS 277
PHP V+ L + ++ + +Y ++ YK G A D+I + + +L
Sbjct: 266 PHPQDVETCLDSILKDDWTTAYLTLNK-YKTIKGLALIDLITGFIEILNNYKLKPKTRLE 324
Query: 278 IIQEIGNVHLRISEGVN 294
I++ + ++ IS+G N
Sbjct: 325 ILKGLSDIEYGISKGGN 341
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 95/215 (44%), Positives = 138/215 (64%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP++ +D+ E T++ L SGN+P+++ GPPG GKT+TIL LA+ L GP+
Sbjct: 27 VEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPNL 86
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTD 110
+K VLELNAS++RGI VR KIK FA+ ++ P +KI+ILDEADSMT+
Sbjct: 87 YKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSMTN 146
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME Y+ TRF L CN +II+PI SRC+ R+ L + ++ I ++
Sbjct: 147 DAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIGQQ 206
Query: 171 ENI---SHTNDG--LEAIVFTAQGDMRQALNNLQS 200
EN+ S N+ ++ ++ + GD+R+A+ LQS
Sbjct: 207 ENLRFESENNEHQVIQELLKISGGDLRKAITYLQS 241
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 105/303 (34%), Positives = 169/303 (55%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP-S 59
+EKYRP T D+ G++D + + F + +P++++ GPPG GKT+TIL LAR + G +
Sbjct: 48 VEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYGSKN 107
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQK--VTLPP---GRH-----KIVILDEADSMT 109
+ VLELNAS+DRGID VR +IK FA K ++ P G+ K++ILDEAD+MT
Sbjct: 108 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADAMT 167
Query: 110 DGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
AQ ALRR ME Y+ TRF + N + K+ + SRC R++ L + + + ++ E
Sbjct: 168 STAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQVIE 227
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAV-KEM 228
KE++ + ++++V ++GDMR+ALN LQ+ H + + + P P + E
Sbjct: 228 KEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVPEPETITNET 287
Query: 229 LLNCVEG-NMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLS-IIQEIGNVH 286
+ +C+ + D +I+ L A D+ + TL I + L L+ I+ +G
Sbjct: 288 IYDCIAAPHPADIQQIVTTLL----ATSDVT-SCLNTLNTLKINKGLALADILSALGEQL 342
Query: 287 LRI 289
R+
Sbjct: 343 YRL 345
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 90/232 (38%), Positives = 133/232 (57%)
Query: 64 VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY 123
VLELNAS+DRGID +R I FA + G K+VILDEAD+MT AQ ALRR +E +
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 124 SNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAI 183
+ TRF L CN KII +QSRC R+ LT ++ ++ + E+E + + DG++A+
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
Query: 184 VFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKI 243
V + GDMR+ALN LQST+ FG VT E V+ P + +L + + +Y+
Sbjct: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
Query: 244 IHHLYKL-GYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVN 294
I L L G A DI+ I +D P +++ ++ ++ ++ R+S G N
Sbjct: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 232
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 369 (135.0 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 81/204 (39%), Positives = 121/204 (59%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-F 60
EKYRP+T DI ++ V LK ++P+++ GPPG GKT+ L R L + F
Sbjct: 19 EKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIF 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH----KIVILDEADSMTDGAQQAL 116
D VL+LNAS++RGI VR KI+ F++ + KI+ILDE D+MT AQ A+
Sbjct: 79 HDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAM 138
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RR +E +S TTRF L CN ++I P+ SRCA R+ L + ++ IC+ E +
Sbjct: 139 RRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMS 198
Query: 177 NDGLEAIVFTAQGDMRQALNNLQS 200
+D L+ ++ ++GD+R+A+ LQS
Sbjct: 199 DDELKQVMEYSEGDLRRAVCTLQS 222
Score = 38 (18.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 248 YKLGYAPEDIIGNIFRVAKTLDIPEPLKLS 277
Y G + +I N+ + T D+P+ + L+
Sbjct: 238 YLRGSSDSLLISNVCKSILTADVPQIIALT 267
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 369 (135.0 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 81/204 (39%), Positives = 121/204 (59%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS-F 60
EKYRP+T DI ++ V LK ++P+++ GPPG GKT+ L R L + F
Sbjct: 19 EKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIF 78
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH----KIVILDEADSMTDGAQQAL 116
D VL+LNAS++RGI VR KI+ F++ + KI+ILDE D+MT AQ A+
Sbjct: 79 HDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAM 138
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RR +E +S TTRF L CN ++I P+ SRCA R+ L + ++ IC+ E +
Sbjct: 139 RRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMS 198
Query: 177 NDGLEAIVFTAQGDMRQALNNLQS 200
+D L+ ++ ++GD+R+A+ LQS
Sbjct: 199 DDELKQVMEYSEGDLRRAVCTLQS 222
Score = 38 (18.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 248 YKLGYAPEDIIGNIFRVAKTLDIPEPLKLS 277
Y G + +I N+ + T D+P+ + L+
Sbjct: 238 YLRGSSDSLLISNVCKSILTADVPQIIALT 267
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 106/297 (35%), Positives = 161/297 (54%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP+
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPAL 100
Query: 60 FKDAVLELNASNDRGIDTVRN--KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 117
F+ VLELNAS++RGI V+N ++ + + P K VILDEADSMT A+ ALR
Sbjct: 101 FRLRVLELNASDERGIQKVKNFAQLTVSGSRSDGKPCPSFKTVILDEADSMTSAAR-ALR 159
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
+TME S TTRF L CN +IIEP+ SR + + L+D +++ I EKEN+ +
Sbjct: 160 QTMEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCFTPLSDKIQQKRLLGIAEKENVKLGD 219
Query: 178 DGLEAIVFTAQGDMRQALNNLQS-THNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGN 236
D +V ++GD+R+A+ LQS T G T E V P A E + V G+
Sbjct: 220 D----LVTISEGDLRKAIPLLQSATRPTGGKETPEDVITDIAGVTPAATIEGI---VSGS 272
Query: 237 MKDSYKIIHHLYKLGYAPEDIIGNIF-RVAKTLDIPEPLKLSIIQEIGNVHLRISEG 292
++ +L G+A ++ + + + ++ + K I +++ V + S G
Sbjct: 273 FDKLEAVVKNLIDEGHAATGLVNELHDSIIEKENLSDKWKSVITEKLAEVE-KCSAG 328
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 87/176 (49%), Positives = 111/176 (63%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT--------LPPGRHKIVILDEADSMTDG 111
F+ VLELNAS++RGI VR K+K FAQ V+ PP KIVILDEADSMT
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSMTSA 158
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
AQ ALRRTME S TTRF L CN +IIEP+ SRC+ R+ L+D ++++I
Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDI 214
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 66/127 (51%), Positives = 81/127 (63%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVT------LPPGRHKIVILDEADSMTDGAQ 113
F+ VLELNAS++RGI VR K+K FAQ V+ P KIVILDEADSMT AQ
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160
Query: 114 QALRRTM 120
ALRRTM
Sbjct: 161 AALRRTM 167
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 179 (68.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 62/215 (28%), Positives = 107/215 (49%)
Query: 72 DRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEIYSNTTRF 129
DR I V+ IK A+ + G+ +K+++L+E D ++ AQ +LRRTME YS++ R
Sbjct: 106 DRYI--VQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRL 163
Query: 130 ALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEA-IVFTAQ 188
L CN+S K+ E I+SRC +R N + +++ KV+E K+ G A I +
Sbjct: 164 ILCCNSSSKVTEAIKSRCLNVRINAPSQEEIV-KVLEFVAKKESLQLPQGFAARIAEKSN 222
Query: 189 GDMRQALNNLQSTHNGFGHVTAEYVFKVCD-EPHPLAVKEMLLNCVEGNMKDSYKIIHHL 247
+R+A+ +L++ T V D E + + ++ E + K +++ +
Sbjct: 223 RSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMK--EQSPKKLFQVRGKV 280
Query: 248 YKL---GYAPEDIIGNIFR-VAKTLDIPEPLKLSI 278
Y+L PE I+ + + K LD LKL +
Sbjct: 281 YELLVNCIPPEVILKRLLHELLKKLD--SELKLEV 313
Score = 119 (46.9 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
++KYRP++ ++ +ED ++LK S + P+++ GP G GK T I+ L + + G S
Sbjct: 4 VDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGASA 63
Query: 61 KDAVLELNASN-DRGIDTV 78
+ +E A D G T+
Sbjct: 64 EKVKVENRAWKVDAGSRTI 82
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 182 (69.1 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 49/135 (36%), Positives = 74/135 (54%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRRTM 120
LE+N S+ D V + IK AQ Q++ R K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVVLLTEVDRLTKDAQHALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y T R L CN++ K+I PI+SRC +R + ++ S + +C KE + +
Sbjct: 153 EKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELA 212
Query: 181 EAIVFTAQGDMRQAL 195
+ I + ++R+AL
Sbjct: 213 KQIAEKSGRNLRKAL 227
Score = 113 (44.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
++KYRP + + + +++ +LK G+ P++++ GP G GK T I+CL R L G
Sbjct: 5 VDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGV 64
Query: 61 KDAVLE 66
+ +E
Sbjct: 65 EKLRIE 70
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 198 (74.8 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 57/168 (33%), Positives = 92/168 (54%)
Query: 41 GVGKTTTILCLARILLGPSFKDAVLELNASN--------DRGI-D--TVRNKIKMFAQ-Q 88
GVG T L + + PS K ++ +SN D GI D V++ +K AQ
Sbjct: 63 GVGVEKTQLIM-KSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTS 121
Query: 89 KVTLPPGRH-KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
++ R K+V+L EADS+T AQ LRRTME Y+N + L+C + +IIEP+QSRC
Sbjct: 122 QIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRC 181
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQAL 195
++ TD + + ++ E+E+ + L+ IV ++G++R+A+
Sbjct: 182 IIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI 229
Score = 90 (36.7 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP+ G + +E+ LK F S+ +P+++ GP G GK T I CL R L G
Sbjct: 5 VDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLRELYG 63
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 198 (74.8 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 57/168 (33%), Positives = 92/168 (54%)
Query: 41 GVGKTTTILCLARILLGPSFKDAVLELNASN--------DRGI-D--TVRNKIKMFAQ-Q 88
GVG T L + + PS K ++ +SN D GI D V++ +K AQ
Sbjct: 63 GVGVEKTQLIM-KSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTS 121
Query: 89 KVTLPPGRH-KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRC 147
++ R K+V+L EADS+T AQ LRRTME Y+N + L+C + +IIEP+QSRC
Sbjct: 122 QIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRC 181
Query: 148 AMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQAL 195
++ TD + + ++ E+E+ + L+ IV ++G++R+A+
Sbjct: 182 IIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI 229
Score = 90 (36.7 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 1 IEKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP+ G + +E+ LK F S+ +P+++ GP G GK T I CL R L G
Sbjct: 5 VDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLRELYG 63
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 185 (70.2 bits), Expect = 9.9e-20, Sum P(2) = 9.9e-20
Identities = 47/135 (34%), Positives = 75/135 (55%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRRTM 120
LE+N S+ D V + +K AQ Q++ R K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y +T R L CN++ K+I PI+SRC +R + + S + +C+KE ++ +
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALPSKLA 212
Query: 181 EAIVFTAQGDMRQAL 195
+ + ++R+AL
Sbjct: 213 RRLAEKSCRNLRKAL 227
Score = 106 (42.4 bits), Expect = 9.9e-20, Sum P(2) = 9.9e-20
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP + + + +++ +L+ G+ P++++ GP G GK T I+C+ R L G
Sbjct: 5 VDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 181 (68.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 65 LELNAS----NDRGIDTVRNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRR 118
LE+N S NDR + ++ +K AQ Q++ R K+V+L E D +T AQ ALRR
Sbjct: 93 LEVNPSDAGNNDRVV--IQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKDAQHALRR 150
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
TME Y T R L CN+ KII PIQSRC +R + + + +C+KE ++ +
Sbjct: 151 TMEKYMATCRLILCCNSISKIIGPIQSRCLSVRVPAPSIEDICHVLSSVCKKEGLNLPPE 210
Query: 179 GLEAIVFTAQGDMRQAL 195
+ + + ++R+AL
Sbjct: 211 LAQRLAEKSGRNLRKAL 227
Score = 111 (44.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
++KYRP S + + + +L+ G+ P++++ GP G GK T I+CL R L G
Sbjct: 5 VDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGV 64
Query: 61 KDAVLE 66
+ +E
Sbjct: 65 EKLRIE 70
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 183 (69.5 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 47/135 (34%), Positives = 74/135 (54%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRRTM 120
LE+N S+ D V + +K AQ Q++ R K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y +T R L CN++ K+I PI+SRC +R + + S + +C KE ++ +
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLA 212
Query: 181 EAIVFTAQGDMRQAL 195
+ + ++R+AL
Sbjct: 213 RRLAEKSCRNLRKAL 227
Score = 106 (42.4 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP + + + +++ +L+ G+ P++++ GP G GK T I+C+ R L G
Sbjct: 5 VDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 186 (70.5 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 41/106 (38%), Positives = 66/106 (62%)
Query: 96 RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
R+K VI++EA+S+T AQ ALRRTME YS R + C++ II PI+SRC ++R
Sbjct: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAP 193
Query: 156 TDAQLLSKVIEICEKENIS-HTNDGLEAIVFTAQGDMRQALNNLQS 200
+D+++ + + ++ E I T D L+ I + G++R +L L+S
Sbjct: 194 SDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Score = 99 (39.9 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSG-NVPNIIISGPPGVGKTTTILCLARILLGP 58
++KYRP++ + + NE+ LK S ++P++++ GP G GK T + L + GP
Sbjct: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 181 (68.8 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 47/135 (34%), Positives = 72/135 (53%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ--QKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LE+N S+ D V + +K AQ Q T K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQKDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y +T R L CN++ K+I PI+SRC +R + + + +C+KE +S +
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLSLPSQLA 212
Query: 181 EAIVFTAQGDMRQAL 195
+ + ++R+AL
Sbjct: 213 RKLAEKSCRNLRKAL 227
Score = 104 (41.7 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP + + +++ +L+ G+ P++++ GP G GK T I+C+ R L G
Sbjct: 5 VDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 179 (68.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 46/135 (34%), Positives = 74/135 (54%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRRTM 120
LE+N S+ D V + +K AQ Q++ R K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y +T R L CN++ K+I PI+SRC +R + + + +C+KE ++ +
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLA 212
Query: 181 EAIVFTAQGDMRQAL 195
+ + ++R+AL
Sbjct: 213 HRLAEKSCRNLRKAL 227
Score = 102 (41.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP + + +++ +L+ G+ P++++ GP G GK T I+C+ R L G
Sbjct: 5 VDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 179 (68.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 46/135 (34%), Positives = 74/135 (54%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRRTM 120
LE+N S+ D V + +K AQ Q++ R K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y +T R L CN++ K+I PI+SRC +R + + + +C+KE ++ +
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLA 212
Query: 181 EAIVFTAQGDMRQAL 195
+ + ++R+AL
Sbjct: 213 HRLAEKSCRNLRKAL 227
Score = 102 (41.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP + + +++ +L+ G+ P++++ GP G GK T I+C+ R L G
Sbjct: 5 VDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 177 (67.4 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 43/114 (37%), Positives = 63/114 (55%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ--QKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
LE+N S+ D V + +K AQ Q T K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENIS 174
E Y +T R L CN++ K+I PI+SRC +R + + + +C+KE ++
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLN 206
Score = 104 (41.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP + + +++ +L+ G+ P++++ GP G GK T I+C+ R L G
Sbjct: 5 VDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 162 (62.1 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 41/145 (28%), Positives = 79/145 (54%)
Query: 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLT 156
++I + +A+ +++GAQ LRRT+E Y R L + KIIEP++SRC +R +
Sbjct: 126 YRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPS 185
Query: 157 DAQLLSKVIEICEKENIS---HTNDGLEAIVFTAQGDMRQALNNLQST---HNGFGH--- 207
+ ++ S + IC++EN+S T + + ++ T ++R+ + L+ + ++ H
Sbjct: 186 EEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALEMSVYANSSKPHQSL 245
Query: 208 -VTAEYVFKVCD----EPHPLAVKE 227
V A Y+ ++CD P + +KE
Sbjct: 246 SVAASYINELCDFVFINPTQIKMKE 270
Score = 116 (45.9 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKY PQ+ ++ ++D ERL+ S ++P+II G PG GK+T I CL + + F
Sbjct: 3 LEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEI----F 58
Query: 61 KDAVL----EL--NASNDRGIDTVRNKIKMFAQ 87
KD + E NA N I+ V++ + Q
Sbjct: 59 KDEKIIRRPECITNAENKININVVQSNYHLELQ 91
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 162 (62.1 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 41/145 (28%), Positives = 79/145 (54%)
Query: 97 HKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLT 156
++I + +A+ +++GAQ LRRT+E Y R L + KIIEP++SRC +R +
Sbjct: 126 YRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPS 185
Query: 157 DAQLLSKVIEICEKENIS---HTNDGLEAIVFTAQGDMRQALNNLQST---HNGFGH--- 207
+ ++ S + IC++EN+S T + + ++ T ++R+ + L+ + ++ H
Sbjct: 186 EEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALEMSVYANSSKPHQSL 245
Query: 208 -VTAEYVFKVCD----EPHPLAVKE 227
V A Y+ ++CD P + +KE
Sbjct: 246 SVAASYINELCDFVFINPTQIKMKE 270
Score = 116 (45.9 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKY PQ+ ++ ++D ERL+ S ++P+II G PG GK+T I CL + + F
Sbjct: 3 LEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEI----F 58
Query: 61 KDAVL----EL--NASNDRGIDTVRNKIKMFAQ 87
KD + E NA N I+ V++ + Q
Sbjct: 59 KDEKIIRRPECITNAENKININVVQSNYHLELQ 91
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 169 (64.5 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 45/141 (31%), Positives = 82/141 (58%)
Query: 65 LELNASNDRGI-D--TVRNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRRT 119
LE+N S D G+ D V + IK AQ ++ + R K++++ E D +T AQ ALRRT
Sbjct: 132 LEVNPS-DAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRT 190
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
ME Y T R ++ N++ +II I+SRC +R + +++S + C++E ++ +
Sbjct: 191 MEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVEL 250
Query: 180 LEAIVFTAQGDMRQALNNLQS 200
+ +V ++ ++R+AL L++
Sbjct: 251 AKRVVDKSERNLRRALLMLEA 271
Score = 110 (43.8 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
++KYRP+ S + ++D E L+ + P+++ GP G GK T I+CL R + G
Sbjct: 44 VDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYG 100
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 166 (63.5 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 64/231 (27%), Positives = 106/231 (45%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQQKVTLPP------GRHKIVILDEADSMTDGAQQAL 116
+E+N D V + IK AQ PP G KIVIL+E D ++ AQ AL
Sbjct: 93 IEINPGEAGSYDRVVIQTIIKEIAQS----PPIDSGSLGAFKIVILNEVDKLSKDAQHAL 148
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHT 176
RRTME Y+ R L C+++ K+I+PI+SRC +R + ++ + ++ E
Sbjct: 149 RRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLP 208
Query: 177 NDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEP---HPLAVKEMLLNCV 233
+ + + G++R AL L+S +Y F+ + P + +++ +C
Sbjct: 209 SKLAVNVAKQSGGNLRYALMLLESQK------AKQYPFQSTELPLLDWENYISQIVKDCF 262
Query: 234 EGNMKDSYKIIH-HLYKL-GYA-PEDIIGN--IFRVAKTLDIPEPLKLSII 279
E I+ LY+L G+ P ++I + + K LD +K II
Sbjct: 263 EEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLD--HNMKFEII 311
Score = 102 (41.0 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
I+KY+P + + + D LK SG+ P++++ GP G GK T IL + + + GP+
Sbjct: 4 IDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 168 (64.2 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 61/234 (26%), Positives = 107/234 (45%)
Query: 35 IISGPPGVGKTTTILCLARIL-----------------LGPSFKDA--VLELNASNDRGI 75
+ SGP G GKTTT LA+ + +G + + V E++A+++RGI
Sbjct: 41 LFSGPRGTGKTTTAKVLAKAVNCEHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGI 100
Query: 76 DTVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALAC 133
D +R ++ + L P G++K+ I+DE +T+ A AL +T+E F LA
Sbjct: 101 DEIRE-----LRESIKLVPAQGKYKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILAT 155
Query: 134 NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQ 193
K+ I SRC + +++ + + I EKE + + + L I ++G +R
Sbjct: 156 TEFNKVPVTIVSRCQRFDFKRISTKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRD 215
Query: 194 ALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHL 247
AL+ + +T E KV + E L++ + N + KII+ +
Sbjct: 216 ALSLMDQILVFNPKITVEDTLKVLGFVSWRKILE-LISAIREN--NQLKIINEI 266
Score = 106 (42.4 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLAR 53
K+RP+TFS+IVG E V+ LK ++ V + + SGP G GKTTT LA+
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAK 59
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 152 (58.6 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
Identities = 36/85 (42%), Positives = 52/85 (61%)
Query: 96 RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
R KIVI++EADS++ AQ ALRRTME YS+ R L CN+ II PI+SR ++R
Sbjct: 132 RFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSP 191
Query: 156 TDAQLLSKVIEICEKENISHT--ND 178
+ + + + EKE++ + ND
Sbjct: 192 SVDNINHILGHVAEKESLKFSTHND 216
Score = 119 (46.9 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
++KYRP+T + ++ L+ + SG+ P++++ GP G GK T I C + GP
Sbjct: 5 VDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGPQV 64
Query: 61 KDAVLELNASN 71
+ L+++ N
Sbjct: 65 EK--LKIDVKN 73
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 212 (79.7 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 67/226 (29%), Positives = 108/226 (47%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSFK 61
KYRPQTF ++V E E L +G + + + G G GKTTT ARI K
Sbjct: 6 KYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTT----ARIFAKDVNK 61
Query: 62 D--AVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ +E++A+++ G++ VRN I+ + K+ I+DE ++ GA AL +T
Sbjct: 62 GLGSPIEIDAASNNGVENVRNIIE---DSRYKSMDSEFKVYIIDEVHMLSTGAFNALLKT 118
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKEN-----IS 174
+E S+ T F L + +KI + I SR + ++ + +++++ I E EN S
Sbjct: 119 LEEPSSGTVFILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEEGAGYS 178
Query: 175 HTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEP 220
+ D L I A G MR ++ L+ + HV E V P
Sbjct: 179 YERDALSFIGKLANGGMRDSITRLEKVLDYSHHVDMEAVSNALGVP 224
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 198 (74.8 bits), Expect = 8.5e-16, P = 8.5e-16
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ E+ V LK ++PN++ GPPG GKT+TIL AR L GP
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 60 FKDAVLELNASNDRGIDTVRNKI 82
F+ VLELNAS++RGI VR K+
Sbjct: 101 FRLRVLELNASDERGIQVVREKV 123
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 160 (61.4 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 45/161 (27%), Positives = 82/161 (50%)
Query: 46 TTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEA 105
T +CL+ I G S V+E++A+++ G+D +R ++K Q L +K+ I+DE
Sbjct: 76 TCPMCLS-ITEGSSMD--VIEIDAASNTGVDDIR-ELKEKVQYAPAL--ANYKVYIIDEV 129
Query: 106 DSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVI 165
+++ A AL +T+E F LA K++ I SRC +++++ + + K+
Sbjct: 130 HMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRKLE 189
Query: 166 EICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFG 206
+I + E I+ + L+ I +A G R N LQ +G
Sbjct: 190 KISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYG 230
Score = 102 (41.0 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLAR 53
K+RPQT +D+VG E LK SSG + + GP G GKT+T LA+
Sbjct: 9 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAK 60
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 209 (78.6 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 74/241 (30%), Positives = 118/241 (48%)
Query: 34 IIISGPPGVGKTTT-------ILCLARILLGPSFK-DA-----------VLELNASNDRG 74
I++SGP G GKTTT +LCL R P K D+ +LE++A+++ G
Sbjct: 41 ILLSGPYGTGKTTTARAVTLSLLCLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTG 100
Query: 75 IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 134
++ VR I+ A K L ++K I+DE ++ A AL + +E +F LA
Sbjct: 101 VEDVRMLIEG-ALYKPLL--SKYKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATT 157
Query: 135 NSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQA 194
+KI I SRC R ++L+ + ++ ++ EKE I T D ++ I A G +R A
Sbjct: 158 ELQKIPATIISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDA 217
Query: 195 LNNLQST--HNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKDSYKIIHHLYKLG 251
L+ L+ H G +T +V + L+ MLL+ + G+ K S ++ LY G
Sbjct: 218 LSLLEQVTLHPSEGKITV-HVLRNKMGLVDLSEVYMLLDSIIAGDCKTSLGKLNDLYSKG 276
Query: 252 Y 252
Y
Sbjct: 277 Y 277
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 209 (78.6 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 74/241 (30%), Positives = 118/241 (48%)
Query: 34 IIISGPPGVGKTTT-------ILCLARILLGPSFK-DA-----------VLELNASNDRG 74
I++SGP G GKTTT +LCL R P K D+ +LE++A+++ G
Sbjct: 41 ILLSGPYGTGKTTTARAVTLSLLCLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTG 100
Query: 75 IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 134
++ VR I+ A K L ++K I+DE ++ A AL + +E +F LA
Sbjct: 101 VEDVRMLIEG-ALYKPLL--SKYKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATT 157
Query: 135 NSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQA 194
+KI I SRC R ++L+ + ++ ++ EKE I T D ++ I A G +R A
Sbjct: 158 ELQKIPATIISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDA 217
Query: 195 LNNLQST--HNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCV-EGNMKDSYKIIHHLYKLG 251
L+ L+ H G +T +V + L+ MLL+ + G+ K S ++ LY G
Sbjct: 218 LSLLEQVTLHPSEGKITV-HVLRNKMGLVDLSEVYMLLDSIIAGDCKTSLGKLNDLYSKG 276
Query: 252 Y 252
Y
Sbjct: 277 Y 277
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 153 (58.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 53/202 (26%), Positives = 89/202 (44%)
Query: 38 GPPGVGKTTTILC-----LARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL 92
GP G G TT C I+ G V+E++A++ G++ +R I + +
Sbjct: 72 GPDGNGGPTTEPCGKCEHCVAIMEGRHVD--VMEMDAASRTGVNDIREIIDSVRYRAAS- 128
Query: 93 PPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRY 152
R+KI I+DE ++ A AL +T+E +F A K+ + SRC
Sbjct: 129 --ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDL 186
Query: 153 NKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL-QSTHNGFGHVTAE 211
++ +++ + I + E D L IV A+G R A + L Q+ +G G +AE
Sbjct: 187 RRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGAGETSAE 246
Query: 212 YV---FKVCDEPHPLAVKEMLL 230
V + D L + +M+L
Sbjct: 247 QVRAMLGLADRGRVLDLMDMIL 268
Score = 103 (41.3 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 3 KYRPQTFSDIVGNEDTVERLK-VFSSSGNVPNIIISGPPGVGKTTTILCLARIL--LGP 58
KYRP+TF+D+VG + V LK F++ I++G G GKTTT +A+ + +GP
Sbjct: 15 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGP 73
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 179 (68.1 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 55/204 (26%), Positives = 98/204 (48%)
Query: 59 SFKDAVLELNASNDRGIDTVRN---KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 115
S D V+E++A+++ G+D +R+ K+K FA VT +K+ I+DE ++ GA A
Sbjct: 86 SISD-VIEIDAASNNGVDEIRDIRDKVK-FAPSAVT-----YKVYIIDEVHMLSIGAFNA 138
Query: 116 LRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISH 175
L +T+E F LA KI I SRC + ++T ++ ++ +I + E +
Sbjct: 139 LLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQV 198
Query: 176 TNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVT-AEYVFKVCDEPHPLAVKEMLLNCVE 234
LE I A G MR AL+ L + G + E + L + ++ + +
Sbjct: 199 EEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAVSQLYIGKLAKSLHD 258
Query: 235 GNMKDSYKIIHHLYKLGYAPEDII 258
N+ D+ + ++ L + G P +I
Sbjct: 259 KNVSDALETLNELLQQGKDPAKLI 282
Score = 72 (30.4 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 4 YRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLAR 53
+RPQ F D+VG E + L+ + + SGP G GKT+ A+
Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 148 (57.2 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 44/135 (32%), Positives = 73/135 (54%)
Query: 65 LELNASNDRGID--TVRNKIKMFAQ-QKVTLPPG-RHKIVILDEADSMTDGAQQALRRTM 120
LE+ S+ D V+ +K AQ Q+V L R K+V+++EAD +T AQ ALRRTM
Sbjct: 93 LEITPSDVGTYDRVVVQELLKEIAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS R L N++ II PI+SR ++R ++ + + + ++E + +
Sbjct: 153 EKYSPNMRLILLANSTSNIIAPIRSRTLLVRVAAPSEEDICTILSTSAKREGWNEAPELN 212
Query: 181 EAIVFTAQGDMRQAL 195
+ I + ++R+AL
Sbjct: 213 KRIAKESGRNLRRAL 227
Score = 98 (39.6 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
++K+RP++ + + + RL+ + SG+ P++++ GP G GK T + + L GP
Sbjct: 5 VDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGP 62
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 166 (63.5 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 57/209 (27%), Positives = 97/209 (46%)
Query: 50 CLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG--RHKIVILDEADS 107
CL I G S D VLE++A+++ G+D +R+ + KV P +K+ I+DE
Sbjct: 79 CLG-ITQG-SISD-VLEIDAASNNGVDEIRD-----IRDKVKYAPSAVEYKVYIIDEVHM 130
Query: 108 MTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
++ GA AL +T+E F LA KI I SRC + K++ ++ ++ +
Sbjct: 131 LSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTV 190
Query: 168 CEKENISHTNDGLEAIVFTAQGDMRQALNNL-QSTHNGFGHVTAEYVFKVCDEPHPLAVK 226
E ++ L+ + A+G MR AL+ + Q+ VT E V V +
Sbjct: 191 VTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTGSVSQQYLG 250
Query: 227 EMLLNCV-EGNMKDSYKIIHHLYKLGYAP 254
L+ C+ E ++ + +II + G P
Sbjct: 251 N-LVECIRENDVSRALRIIDEMMGKGKDP 278
Score = 77 (32.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 4 YRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARIL 55
+RPQ F D+VG + + L+ V + + SGP G GKTT A+ +
Sbjct: 10 WRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 141 (54.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 37/137 (27%), Positives = 71/137 (51%)
Query: 64 VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTME 121
VLE++ +++ G+D +R ++ V P R +KI I+DE ++ A AL +T+E
Sbjct: 90 VLEIDGASNTGVDDIRE-----LRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLE 144
Query: 122 IYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
+F A K+ I SRC + ++ A++++++ I ++E IS +++ L
Sbjct: 145 EPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVARLRYIVDREGISISDESLA 204
Query: 182 AIVFTAQGDMRQALNNL 198
+ G MR +L+ L
Sbjct: 205 VVARKGDGSMRDSLSVL 221
Score = 99 (39.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARIL 55
K+RPQTFSD+ G E L+ SG + + + +G GVGKT++ LA+ L
Sbjct: 9 KWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKAL 62
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 143 (55.4 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 53/238 (22%), Positives = 111/238 (46%)
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALR 117
F D ++E++A++ ++ R+ + V P GR K+ ++DE ++ + AL
Sbjct: 87 FVD-LIEIDAASRTKVEDTRDLL-----DNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
+T+E +F LA + +K+ I SRC L Q+ ++ I +E+I+H
Sbjct: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200
Query: 178 DGLEAIVFTAQGDMRQALNNL-QSTHNGFGHVTAEYVFKVC---DEPHPLAVKEMLLNCV 233
L+ + A+G +R AL+ Q+ +G G V+ + V + D+ L++ E + V
Sbjct: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM---V 257
Query: 234 EGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISE 291
E N + +I+ G E ++ + + + + + ++ ++ + LR+ E
Sbjct: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315
Score = 94 (38.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLAR 53
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 147 (56.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 66/261 (25%), Positives = 118/261 (45%)
Query: 32 PNIIISGPPGVGKTTTILCLARIL----------LG--PSFKDA-------VLELNASND 72
P + SGP G GKT+ LA+ L G PS ++ V+E++ ++
Sbjct: 39 PAYLFSGPHGCGKTSCARILAKALNCVQREASEPCGECPSCREIATGTNLNVIEIDGASH 98
Query: 73 RGIDTVRNKIKMFAQQKVTLPP-G-RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFA 130
G+ VR +IK +++ PP G R+K+ I+DE +++ A AL +T+E F
Sbjct: 99 TGVGDVR-QIK----EEILFPPHGTRYKVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFI 153
Query: 131 LACNNSEKIIEPIQSRCAMLRYNKLTDAQ-LLSKVIEICEKENISHTNDG-LEAIVFTAQ 188
A +I ++SRC + +L D Q L+ + + ++ I+ DG L I +
Sbjct: 154 FATTEVHRIPATVKSRCQQFHF-RLVDTQTLVCALAQAAQQMQIA-VEDGVLSWIARESA 211
Query: 189 GDMRQALNNL-QSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHL 247
G MR A Q+ + G VT E + K ++ + +C + + + +++ L
Sbjct: 212 GSMRDAYTLFDQTVVSCAGPVTLENIQKKLGLMTDDSLAALFSHCCRKDARAALELVDAL 271
Query: 248 YKLGYAPEDIIGNIFRVAKTL 268
G + E + + R A+ L
Sbjct: 272 VSSGVSVEQCVIDCVRYARAL 292
Score = 85 (35.0 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNV-PNIIISGPPGVGKTTTILCLARIL 55
+YRPQ F ++G + V L+ V P + SGP G GKT+ LA+ L
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKAL 62
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 182 (69.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 55/178 (30%), Positives = 87/178 (48%)
Query: 23 KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82
K+F+ + N PN + G P +C A + S +D V+E++A+++ G+D +R
Sbjct: 55 KIFAKAMNCPNQV-GGEPC---NNCYICQA--VTDGSLED-VIEMDAASNNGVDEIRE-- 105
Query: 83 KMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII 140
+ K T P R+K+ I+DE ++ GA AL +T+E + F LA KI
Sbjct: 106 ---IRDKSTYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIP 162
Query: 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
I SR + + + + I EKENIS + +E I A+G MR AL+ L
Sbjct: 163 ATILSRVQRFEFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL 220
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 166 (63.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 48/171 (28%), Positives = 86/171 (50%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP 94
++SGP G+GKTTT A+I+ S + V+E NAS++R V +M +
Sbjct: 411 LLSGPAGIGKTTT----AKIVSEASGYN-VIEFNASDERNKAAVEKISEMATGGYSIMSL 465
Query: 95 GRHKI----VILDEADSMTDGAQQALRRTMEIYSNTT-RFALACNNSEKI-IEPIQSRCA 148
K+ +I+DE D M+ G + +++ T CN+ + + + ++C
Sbjct: 466 NNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEKTKCPIICICNDRQNNKMRTLANKCY 525
Query: 149 MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199
L+++ ++ +++EIC+KE I + LE + + GD+RQ LN LQ
Sbjct: 526 DLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
Score = 63 (27.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSS 28
+EKYRP+ +++VGN V +L+ + +S
Sbjct: 354 VEKYRPKNLNELVGNNQNVIKLQNWLAS 381
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 166 (63.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 48/171 (28%), Positives = 86/171 (50%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP 94
++SGP G+GKTTT A+I+ S + V+E NAS++R V +M +
Sbjct: 411 LLSGPAGIGKTTT----AKIVSEASGYN-VIEFNASDERNKAAVEKISEMATGGYSIMSL 465
Query: 95 GRHKI----VILDEADSMTDGAQQALRRTMEIYSNTT-RFALACNNSEKI-IEPIQSRCA 148
K+ +I+DE D M+ G + +++ T CN+ + + + ++C
Sbjct: 466 NNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEKTKCPIICICNDRQNNKMRTLANKCY 525
Query: 149 MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199
L+++ ++ +++EIC+KE I + LE + + GD+RQ LN LQ
Sbjct: 526 DLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
Score = 63 (27.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSS 28
+EKYRP+ +++VGN V +L+ + +S
Sbjct: 354 VEKYRPKNLNELVGNNQNVIKLQNWLAS 381
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 145 (56.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 50/205 (24%), Positives = 92/205 (44%)
Query: 55 LLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPG---RHKIVILDEADSMTDG 111
+LG S +D +LEL+A G + VR +K +TL P R+K+ ++DE +
Sbjct: 502 MLGKS-RD-LLELDAGKKNGAEKVRYLLKKL----LTLAPQSSQRYKVFVIDECHLLPSR 555
Query: 112 AQQALRRTMEIYSNTTRFALAC--NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICE 169
+L + +E + +F C + + + IQSRC +NK+ D ++ ++ +I
Sbjct: 556 TWLSLLKFLE--NPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIAS 613
Query: 170 KENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEML 229
EN+ + L+ I A G +R A L+ +T + V ++ + E+L
Sbjct: 614 DENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELL 673
Query: 230 LNCVEGNMKDSYKIIHHLYKLGYAP 254
+ + ++ K L LG P
Sbjct: 674 ELALSSDTAETVKKARELLDLGADP 698
Score = 88 (36.0 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARILLGPSF 60
+KY+P F +++G V+ L G V ++ + GP G GKT+T ARIL
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTST----ARILSAALN 481
Query: 61 KDAVLE 66
D V E
Sbjct: 482 CDVVTE 487
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 174 (66.3 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 48/142 (33%), Positives = 77/142 (54%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQQ-KVTLPPGR-HKIVILDEADSMTDGAQQALRRTM 120
LE+ S+ D V + +K AQ +V L + K+V+++ AD +T AQ ALRRTM
Sbjct: 92 LEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTM 151
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YSN R L N++ KIIEPI+SR M+R T +++ + +I + + + L
Sbjct: 152 EKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLL 211
Query: 181 EAIVFTAQGDMRQALNNLQSTH 202
I ++R+A+ L++ H
Sbjct: 212 NNIANNCDRNLRKAILLLETVH 233
Score = 112 (44.5 bits), Expect = 0.00095, P = 0.00095
Identities = 40/174 (22%), Positives = 81/174 (46%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+++YRP+T + + ++ ERL SS+ P++++ GP G GK T ++ + R L GP
Sbjct: 4 LDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPGS 63
Query: 61 KDAVLELNASNDRGIDTVR-NKIKMFAQQKVTLPP-GRHKIVILDEADSMTDGAQQALRR 118
+ ++ ++ N + ++T G + VI+ E + D AQ A
Sbjct: 64 EKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQEL--LKDVAQSA--- 118
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQS--RCAMLRYNK----LTDAQLLSKVIE 166
+++ + + N ++++ Q+ R M +Y+ + A SK+IE
Sbjct: 119 QVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIE 172
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 154 (59.3 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 56/191 (29%), Positives = 88/191 (46%)
Query: 35 IISGPPGVGKTTTILCLARIL---LG----PSFK-DAVLELNASN--DR-GIDTV-RNKI 82
+ +G GVGKTT A+ L LG P K DA ++++ D ID + K+
Sbjct: 42 LFTGTRGVGKTTIARIFAKSLNCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKV 101
Query: 83 KMFAQ--QKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138
+ V P GR K+ ++DE ++ + AL +T+E +F LA + +K
Sbjct: 102 DDTREILDNVQYAPSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQK 161
Query: 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ + SRC LT Q+ K+ EI E +SH L + A+G MR +L+
Sbjct: 162 LPITVLSRCLQFHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLT 221
Query: 199 -QSTHNGFGHV 208
Q+ G GH+
Sbjct: 222 DQAIAQGQGHI 232
Score = 68 (29.0 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARIL 55
K+RP+ F ++G E V L S + + + +G GVGKTT A+ L
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSL 62
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 154 (59.3 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 56/191 (29%), Positives = 88/191 (46%)
Query: 35 IISGPPGVGKTTTILCLARIL---LG----PSFK-DAVLELNASN--DR-GIDTV-RNKI 82
+ +G GVGKTT A+ L LG P K DA ++++ D ID + K+
Sbjct: 42 LFTGTRGVGKTTIARIFAKSLNCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKV 101
Query: 83 KMFAQ--QKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138
+ V P GR K+ ++DE ++ + AL +T+E +F LA + +K
Sbjct: 102 DDTREILDNVQYAPSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQK 161
Query: 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ + SRC LT Q+ K+ EI E +SH L + A+G MR +L+
Sbjct: 162 LPITVLSRCLQFHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLT 221
Query: 199 -QSTHNGFGHV 208
Q+ G GH+
Sbjct: 222 DQAIAQGQGHI 232
Score = 68 (29.0 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARIL 55
K+RP+ F ++G E V L S + + + +G GVGKTT A+ L
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSL 62
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 121 (47.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 33/135 (24%), Positives = 64/135 (47%)
Query: 64 VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY 123
VLEL+A++ G+ +R+ + V+ R+K+ I+DE +++ + AL +T+E
Sbjct: 128 VLELDAASRTGVADMRDLLDSARYGPVS---ARYKVYIIDEVHMLSNASFNALLKTLEEP 184
Query: 124 SNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAI 183
+F A K+ + SRC +L +L + + + E + + + L I
Sbjct: 185 PPHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALI 244
Query: 184 VFTAQGDMRQALNNL 198
A+G +R L+ L
Sbjct: 245 ARAAEGSVRDGLSLL 259
Score = 101 (40.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR 53
KYRP+ F D++G E V L +G + + +++G GVGKTTT LAR
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLAR 86
Score = 61 (26.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 41/134 (30%), Positives = 55/134 (41%)
Query: 166 EICEKENISHTNDGLE--AIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPL 223
E C+ S D LE A T DMR L++ + +G V+A Y + DE H L
Sbjct: 115 EHCDAIMASRHPDVLELDAASRTGVADMRDLLDSAR-----YGPVSARYKVYIIDEVHML 169
Query: 224 --AVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRV-AKTLDIPEPLKLSIIQ 280
A LL +E K I ++ P ++ R K LD E LS +
Sbjct: 170 SNASFNALLKTLE-EPPPHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGE---LS--R 223
Query: 281 EIGNVHLRISEGVN 294
+GNV SEG N
Sbjct: 224 HLGNVAQ--SEGAN 235
>TAIR|locus:2032432 [details] [associations]
symbol:AT1G24290 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR009060 Pfam:PF00004 Pfam:PF00627 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0017111 SUPFAM:SSF46934 EMBL:AC002396
UniGene:At.41453 UniGene:At.63976 HOGENOM:HOG000017623 KO:K07478
InterPro:IPR021886 Pfam:PF12002 IPI:IPI00523189 PIR:T00660
RefSeq:NP_173839.1 HSSP:Q56313 ProteinModelPortal:O48696 SMR:O48696
STRING:O48696 PRIDE:O48696 EnsemblPlants:AT1G24290.1 GeneID:839045
KEGG:ath:AT1G24290 TAIR:At1g24290 InParanoid:O48696 OMA:FEVIAPL
PhylomeDB:O48696 ProtClustDB:CLSN2682390 Genevestigator:O48696
Uniprot:O48696
Length = 525
Score = 174 (66.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 74/287 (25%), Positives = 122/287 (42%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSS---SGNVPNIIISGPPGVGKTTTILCLARILLGP 58
E+ RP+T D+VG + + + S S +P+I+ GPPG GKT+ L P
Sbjct: 105 ERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSSKDP 164
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
S V L+A G+ VR+ ++ + +++ L + ++ +DE Q
Sbjct: 165 SLYRFV-SLSAVTS-GVKDVRDAVE--SAKRLNLEGRKRTVLFMDEVHRFNKSQQDTFLP 220
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQ---LLSKVIEICEK--ENI 173
+E S A N S +I P+ SRC +L N L LL + ++ E+ N
Sbjct: 221 VIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERGLPNS 280
Query: 174 SHTNDG-LEAIVFTAQGDMRQALNNLQ-STHNGFGHVTAEYVFKVCDEPHPLAVKEMLLN 231
+D +E + GD R ALN L+ S + V + D L K + +
Sbjct: 281 VEVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTDAVVSIDDAKEALQCKHLAYD 340
Query: 232 CVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDI-PEPLKLS 277
G + Y +I L+K D I+ +A+ L+ EPL ++
Sbjct: 341 KA-G--EQHYNLISALHK-SMRGGDANAAIYWLARMLEGGEEPLYIA 383
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 113 (44.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 43/168 (25%), Positives = 75/168 (44%)
Query: 49 LCLARILLGPSFKDA--VLELNASNDRGIDTVRNKIKMFAQQKVTLPP--GRHKIVILDE 104
+C + + L P+ + V+EL+A++ G+D R + + P R+++ I+DE
Sbjct: 72 VCESCVSLAPNAPGSIDVVELDAASHGGVDDTRE-----LRDRAFYAPVQSRYRVFIVDE 126
Query: 105 ADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKV 164
A +T AL + +E F A EK++ I+SR + L + + +
Sbjct: 127 AHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALL 186
Query: 165 IEICEKENISHTNDGLEAIVFTAQGDM-RQALNNLQSTHNGFG--HVT 209
ICE+E + +D + +V A G R L+ L G HVT
Sbjct: 187 ARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVT 233
Score = 101 (40.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARIL 55
KYRP +F+++VG E L V +G + + + SGP G GKT++ LAR L
Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSL 59
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 166 (63.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 53/190 (27%), Positives = 93/190 (48%)
Query: 9 FSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68
FS + G+ T ++FS + + GP T CLA L G ++E++
Sbjct: 42 FSGLRGSGKT-SSARIFSRA----LVCEQGPSDTPCGTCKHCLAA-LEGKHID--IIEMD 93
Query: 69 ASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTR 128
A+++RG++ ++ I+ Q K T R KI I+DE +T A AL +T+E + +
Sbjct: 94 AASNRGLEDIQALIE---QTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVK 150
Query: 129 FALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQ 188
F LA + K+ + SR R+ ++ +++L+ + EI KEN+ + L+ I +
Sbjct: 151 FILATTDPLKLPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGN 210
Query: 189 GDMRQALNNL 198
G +R L L
Sbjct: 211 GSLRDTLTLL 220
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 141 (54.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 65/261 (24%), Positives = 113/261 (43%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN----KIKMFAQQKV 90
+ +G GVGKTT LA+ L A + N R ID R ++ ++ KV
Sbjct: 42 LFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKV 101
Query: 91 --------TLP--P--GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEK 138
+P P GR K+ ++DE ++ + AL +T+E + +F LA + K
Sbjct: 102 EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161
Query: 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ + SRC +L Q+ + + ++EN+ N L+ + A G +R AL+ L
Sbjct: 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLL 221
Query: 199 -QSTHNGFGHVTAEYVFKVCDEPHPLAVKEML--LNCVEGN--MKDSYKIIHHLYKLGYA 253
QS G G V V + PL + ++L L G+ + +++ A
Sbjct: 222 DQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNA 281
Query: 254 PEDIIGNIFRVAKTLDIPEPL 274
D++ + ++A +PE L
Sbjct: 282 LADLLSLLHQIAIIQTVPEAL 302
Score = 67 (28.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARIL 55
K+RP+ F +++G V L + + + +G GVGKTT LA+ L
Sbjct: 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 162 (62.1 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 55/187 (29%), Positives = 88/187 (47%)
Query: 30 NVPNIIISGPPGVGKTTTI----LCLARILLGP------------SFKDA----VLELNA 69
N P +++ G GVGKTT LCL GP S K++ V+E++A
Sbjct: 35 NTPLLMV-GASGVGKTTCARIVSLCL-NCENGPTSSPCGTCATCTSIKNSHNPDVVEMDA 92
Query: 70 SNDRGIDTVRNKIKMFAQQKVTLP-PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTR 128
+++ +D +R + + LP R K+ I+DE ++ A AL +T+E + +
Sbjct: 93 ASNTSVDDIR----VILESSNYLPVSSRFKVYIIDEVHMLSTSAFNALLKTLESPAQHAK 148
Query: 129 FALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQ 188
F +A K+ + SRC L KL QL +++I KENI+H L I +
Sbjct: 149 FIMATTEVRKVPVTVASRCLRLDLGKLPIKQLYDHLVKISAKENIAHDESSLMLIAENSS 208
Query: 189 GDMRQAL 195
G +R +L
Sbjct: 209 GSVRNSL 215
>TIGR_CMR|GSU_2067 [details] [associations]
symbol:GSU_2067 "ATPase, AAA family" species:243231
"Geobacter sulfurreducens PCA" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:NP_953116.1
ProteinModelPortal:Q74BH4 GeneID:2686000 KEGG:gsu:GSU2067
PATRIC:22026995 BioCyc:GSUL243231:GH27-1993-MONOMER Uniprot:Q74BH4
Length = 440
Score = 158 (60.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 59/209 (28%), Positives = 98/209 (46%)
Query: 2 EKYRPQTFSDIVGNEDTV---ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
E+ RP+T + VG E + + L+ S + ++I GPPG GKTT LAR++
Sbjct: 20 ERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTT----LARVIANA 75
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
+ K + +A GI +R +K ++K GR+ I+ +DE Q A
Sbjct: 76 T-KSHFIFFSAILS-GIKEIREIVKEAEEEKKYR--GRNTILFVDEIHRFNKSQQDAFLP 131
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDA---QLLSKVIEICEK----E 171
+E + T A N S +++ P+ SRC +L N L+ Q+L + E+
Sbjct: 132 YVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILRSALADPERGLGAS 191
Query: 172 NISHTNDGLEAIVFTAQGDMRQALNNLQS 200
++ +D L + + GD R ALN L++
Sbjct: 192 GLAADDDALAFMAEQSGGDGRVALNTLET 220
Score = 40 (19.1 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 220 PHPLAVKEMLLNCVEG-NMKDSYKIIHHLYKLGYAPEDII 258
P PL ++ ++ YK H Y+ GY P++ +
Sbjct: 365 PVPLHIRNAPTRLMKDLGYHKGYKYAHD-YEAGYTPQNYL 403
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 52/204 (25%), Positives = 100/204 (49%)
Query: 33 NIIISGPPGVGKTTTI----LCLARILLGP------------SFKDA----VLELNASND 72
+I+++G GVGKTT +CL + GP S K+ V+E++A+++
Sbjct: 50 SILLTGISGVGKTTAARIISMCL-NCISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASN 108
Query: 73 RGIDTVRNKIKMFAQQKVTLP-PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFAL 131
I+ V K+ + +P + K+ I+DE +++ A AL + +E + +F L
Sbjct: 109 TSIEDV----KVILENSRYMPISSKFKVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFIL 164
Query: 132 ACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDM 191
A +KI I SRC + +++ +L+ + + +KEN+S + ++ I + A G +
Sbjct: 165 ATTEVKKIPVTIISRCQRFDFQRISTDKLVDHLKVVAKKENVSFDEESIKLIAYNADGSI 224
Query: 192 RQALNNLQSTHNGFGHVTAEYVFK 215
R AL+ L+ + +E + K
Sbjct: 225 RNALSLLEQAAIYSNKILSENITK 248
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 148 (57.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 48/202 (23%), Positives = 96/202 (47%)
Query: 11 DIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARIL----LGPSFKDAVLE 66
D G + + K + +G+ +++SG PG+GKTT+ ++++L + + D+ +
Sbjct: 373 DQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASDSRGK 432
Query: 67 LNASNDRGID-TVRNKIKMFAQQKV---TLPPGRHK--IVILDEADSMTDGAQQALRRTM 120
N++ +GI + N +K + +H ++I+DE D M+ G + + +
Sbjct: 433 ANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVADLI 492
Query: 121 -EIYSNTTRFALACNN--SEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTN 177
I + CN+ S+K+ + + + C L Y K T Q+ +++ I + E +
Sbjct: 493 ASIKISKIPIICICNDRYSQKL-KSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINE 551
Query: 178 DGLEAIVFTAQGDMRQALNNLQ 199
LE + GD+R A+N LQ
Sbjct: 552 IALEELAERVNGDIRLAVNQLQ 573
Score = 58 (25.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 2 EKYRPQTFSDIVGNEDTVERL 22
EKYRP+ ++IVGN+ V +L
Sbjct: 344 EKYRPKVPNEIVGNQSLVTQL 364
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 46/142 (32%), Positives = 78/142 (54%)
Query: 65 LELNASNDRGIDTV--RNKIKMFAQ-QKVTLPPG-RHKIVILDEADSMTDGAQQALRRTM 120
LE+ S+ D V ++ +K AQ Q+V R K+V+++EAD ++ AQ ALRRTM
Sbjct: 93 LEITPSDVGNYDRVVIQDLLKEVAQTQQVDQGARQRFKVVVINEADHLSRDAQAALRRTM 152
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E YS R L N++ II PI+SR ++R ++ ++ + + +KE + +
Sbjct: 153 EKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPSEDEICTVLAASAKKEGWTVSTQLH 212
Query: 181 EAIVFTAQGDMRQALNNLQSTH 202
E I + ++R+AL L++ H
Sbjct: 213 ERIAKESGRNLRRALLMLETVH 234
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 32/129 (24%), Positives = 66/129 (51%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
++K+RP++ + +E+ ERL+ + SG+ P+++I GP G GK T I+ + L GP
Sbjct: 5 VDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGPGV 64
Query: 61 KDAVLE---LNASNDRGIDTVRNKIKMFAQQKVTLPP-GRH-KIVILD--EADSMTDGAQ 113
+ ++ S++R ++ N + ++T G + ++VI D + + T
Sbjct: 65 EKIKIDARVFQTSSNRKLEF--NIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQQVD 122
Query: 114 QALRRTMEI 122
Q R+ ++
Sbjct: 123 QGARQRFKV 131
>SGD|S000004683 [details] [associations]
symbol:CTF18 "Subunit of a Ctf18 RFC-like complex"
species:4932 "Saccharomyces cerevisiae" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI;IMP] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0043596 "nuclear replication
fork" evidence=IDA] [GO:0035753 "maintenance of DNA trinucleotide
repeats" evidence=IMP] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
SGD:S000004683 GO:GO:0005739 GO:GO:0005524 GO:GO:0003677
EMBL:BK006946 GO:GO:0006270 GO:GO:0043596 GO:GO:0000724 EMBL:Z49259
GO:GO:0017111 eggNOG:COG0470 GO:GO:0007064 OMA:YNEGFSN KO:K11269
GeneTree:ENSGT00550000075029 OrthoDB:EOG4HDX3F GO:GO:0031390
EMBL:L24514 PIR:S50340 RefSeq:NP_013795.1 ProteinModelPortal:P49956
SMR:P49956 DIP:DIP-5868N IntAct:P49956 MINT:MINT-626774
STRING:P49956 PaxDb:P49956 EnsemblFungi:YMR078C GeneID:855102
KEGG:sce:YMR078C CYGD:YMR078c HOGENOM:HOG000066044 NextBio:978425
Genevestigator:P49956 GermOnline:YMR078C GO:GO:0035753
Uniprot:P49956
Length = 741
Score = 104 (41.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 133 CNNS-EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDM 191
CNN +E ++ C ++ + +D LL ++ IC KEN++ + ++ AQGD+
Sbjct: 297 CNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDV 356
Query: 192 RQALNNLQ 199
R +NNLQ
Sbjct: 357 RNCINNLQ 364
Score = 74 (31.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82
+++ GPPG+GKT+ +A+ F +V E+NAS++R V+ KI
Sbjct: 179 LLLHGPPGIGKTSVAHVIAK---QSGF--SVSEINASDERAGPMVKEKI 222
Score = 68 (29.0 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 1 IEKYRPQTFSDIVGNEDTVERL 22
+EK+RP+ F D+VGNE T R+
Sbjct: 117 VEKWRPKKFLDLVGNEKTNRRM 138
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 120 (47.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/109 (25%), Positives = 53/109 (48%)
Query: 88 QKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQS 145
+ +LPP R K+ I+DE + L +++ +S + F L + EK+ + S
Sbjct: 345 KSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLS 404
Query: 146 RCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQA 194
R ++K+ DA + +K+ +IC +E I ++ I + G +R A
Sbjct: 405 RSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDA 453
Score = 85 (35.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARIL 55
+K+RP++F ++VG E V+ L G + ++ + GP G GKT+T A L
Sbjct: 243 QKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAAL 297
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 126 (49.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 43/191 (22%), Positives = 78/191 (40%)
Query: 66 ELNASNDRGIDTVRNKIKMFAQQKVTLP--PGRHKIVILDEADSMTDGAQQALRRTMEIY 123
EL+ +N +G D VR +K LP +K+ ++DE + + + +E
Sbjct: 537 ELDGANKKGADKVRYLLKNLP---TILPRNSSMYKVFVIDECHLLPSKTWLSFLKFLENP 593
Query: 124 SNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAI 183
F + E + IQSRC ++KL D+ ++ ++ +I EN+ L+ I
Sbjct: 594 LQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDLHALDLI 653
Query: 184 VFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKI 243
A G +R A L+ +T V ++ + E+L + + ++ K
Sbjct: 654 AMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDTAETVKR 713
Query: 244 IHHLYKLGYAP 254
L LG P
Sbjct: 714 ARELLDLGADP 724
Score = 81 (33.6 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 2 EKYRPQTFSDIVGNEDTVERL-KVFSSSGNVPNIIISGPPGVGKTTT 47
+KYRP F +++G V+ L S P + GP G GKT+T
Sbjct: 453 QKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTST 499
>ASPGD|ASPL0000029025 [details] [associations]
symbol:AN5617 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AACD01000098 EMBL:BN001305 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF
InterPro:IPR021886 Pfam:PF12002 OrthoDB:EOG4Z924S
RefSeq:XP_663221.1 ProteinModelPortal:Q5B1G3 STRING:Q5B1G3
EnsemblFungi:CADANIAT00003453 GeneID:2871909 KEGG:ani:AN5617.2
Uniprot:Q5B1G3
Length = 528
Score = 153 (58.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 59/207 (28%), Positives = 92/207 (44%)
Query: 2 EKYRPQTFSDIVGNE--DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
E+ RP+T ++ G E L+ VP++I+ G PG GKTT +A ++G
Sbjct: 119 ERMRPRTLDEVCGQELVGPTGVLRGLIEEDRVPSMILWGGPGTGKTTIARVIAS-MVGSR 177
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP-PGRHKIVILDEADSMTDGAQQALRR 118
F +E+N S G+ + K+FA K L GR I+ DE + Q
Sbjct: 178 F----VEIN-STSTGVAECK---KIFADAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLG 229
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTND 178
+E T A N S K+ + SRC +KLTD + S + + E +++
Sbjct: 230 PVESGQVTLIGATTENPSFKVQNALLSRCRTFTLSKLTDEDIRSILNRALKTEGPNYSPS 289
Query: 179 GL---EAIVFTAQ---GDMRQALNNLQ 199
L E + + A+ GD R +LN L+
Sbjct: 290 ALVDDELLDYLAKFADGDARTSLNLLE 316
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 124 (48.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 40/155 (25%), Positives = 73/155 (47%)
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F D +LE++A++ ++ R + Q K GR K+ ++DE ++ + AL +T
Sbjct: 87 FVD-LLEIDAASRTKVEDTRELLDN-VQYKPAR--GRFKVYLIDEVHMLSRHSFNALLKT 142
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E +F LA + +K+ I SRC ++ + ++ ++ E IS +
Sbjct: 143 LEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLDKVLHAEQISSDSKA 202
Query: 180 LEAIVFTAQGDMRQALNNL-QSTHNGFGHVTAEYV 213
L + A G MR AL+ Q+ G G V ++ V
Sbjct: 203 LNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIV 237
Score = 69 (29.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTT 46
K+RP FS++VG + L+ + + + + SG GVGKTT
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTT 53
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 124 (48.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 40/155 (25%), Positives = 73/155 (47%)
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F D +LE++A++ ++ R + Q K GR K+ ++DE ++ + AL +T
Sbjct: 87 FVD-LLEIDAASRTKVEDTRELLDN-VQYKPAR--GRFKVYLIDEVHMLSRHSFNALLKT 142
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E +F LA + +K+ I SRC ++ + ++ ++ E IS +
Sbjct: 143 LEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLDKVLHAEQISSDSKA 202
Query: 180 LEAIVFTAQGDMRQALNNL-QSTHNGFGHVTAEYV 213
L + A G MR AL+ Q+ G G V ++ V
Sbjct: 203 LNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIV 237
Score = 69 (29.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTT 46
K+RP FS++VG + L+ + + + + SG GVGKTT
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTT 53
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 146 (56.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 61/212 (28%), Positives = 101/212 (47%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSSS---GNVPNIIISGPPGVGKTTTILCLARILLGPS 59
K RP+T +D VG + + + S G+ ++I GPPG GKTT LA I+
Sbjct: 62 KMRPKTLADYVGQQHILGGDSPLAQSIEQGHCHSLIFWGPPGSGKTT----LAEIIA--Q 115
Query: 60 FKDAVLELNASNDRGIDTVRN---KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 116
+A +E ++ GI +R+ K K+ AQ + R ++ +DE Q A
Sbjct: 116 HANAEIERVSAVTSGIKEIRSAIEKAKLRAQGEGANK--RRTVLFVDEVHRFNKSQQDAF 173
Query: 117 RRTMEIYSNTTRF--ALACNNSEKIIEPIQSRCAMLRYNKLT-D--AQLLSKVIEICEKE 171
+E T F A N + ++ + + SR + KLT D AQ+L + I +CE E
Sbjct: 174 LPHIE--DGTIIFIGATTENPAFELNQALLSRARLYTLKKLTRDDLAQVLQRAISLCEAE 231
Query: 172 ---NISHTNDGLEAIVFTAQGDMRQALNNLQS 200
+I + D ++++ + GD R+ LN L++
Sbjct: 232 QQLSIKLSVDAKQSLLNRSDGDARRLLNLLEN 263
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 149 (57.5 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 53/212 (25%), Positives = 92/212 (43%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNI-IISGPPGVGKTTTILCLARILLGPSF 60
+KY P+TF D++G V+ L + V + + GP G GKT+ AR L S
Sbjct: 347 QKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCHST 406
Query: 61 KDA----VLELNASNDRGIDT-VRNK--IKMFAQQ----KVTLPPGRHK--IVILDEADS 107
+ + V S D G + +R +K F + K + + + ++I D+ D+
Sbjct: 407 EQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQLVLIFDDCDT 466
Query: 108 MTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
M+ L + ++ F L C++ + + I SRC + KL D ++ + I
Sbjct: 467 MSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLI 526
Query: 168 CEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199
KE I D L+ + + G +R A L+
Sbjct: 527 ASKEEIDIDKDALKLVASRSDGSLRDAEMTLE 558
>TIGR_CMR|CHY_0329 [details] [associations]
symbol:CHY_0329 "ATP-dependent protease LonB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004252 "serine-type endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0030436 "asexual sporulation"
evidence=ISS] InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008268 InterPro:IPR008269
InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362 PROSITE:PS01046
PROSITE:PS50045 SMART:SM00382 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067 PANTHER:PTHR10046
RefSeq:YP_359192.1 ProteinModelPortal:Q3AF92 STRING:Q3AF92
GeneID:3728068 KEGG:chy:CHY_0329 PATRIC:21273827
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
BioCyc:CHYD246194:GJCN-330-MONOMER InterPro:IPR014251
TIGRFAMs:TIGR02902 Uniprot:Q3AF92
Length = 547
Score = 131 (51.2 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTI-LCLARILLGPS- 59
EK RP+ FS+I+G E+ +E LK N ++I+ GPPGVGKT L L + P+
Sbjct: 62 EKTRPENFSEIIGQEEGIEALKAALCGPNPQHVILYGPPGVGKTAAARLVLKEAIKSPAS 121
Query: 60 -FKD--AVLELNAS----NDRGI 75
FK+ A +E++A+ ++RGI
Sbjct: 122 PFKEGAAFVEVDATCTRFDERGI 144
Score = 54 (24.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 137 EKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALN 196
E++ ++SRC + + L D ++ +K IS L+ IV A R+A+N
Sbjct: 250 EELPPALRSRCVEIFFKPLGDEEIREIAQNAAKKIGISLGKHALQTIVKYANSG-REAVN 308
Query: 197 NLQ 199
+Q
Sbjct: 309 IVQ 311
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 151 (58.2 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 45/175 (25%), Positives = 85/175 (48%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL-- 92
++SGPPG+GKTTT + + L F DAV E NAS+ R +++++ K
Sbjct: 484 LLSGPPGIGKTTTATLVVKEL---GF-DAV-EFNASDTRSKRLLKDEVSTLLSNKSLSGY 538
Query: 93 ------PPGRHKIVILDEADSMTDGAQQA-LRRTMEIYSNTT-RFALACNN-SEKIIEPI 143
R ++I+DE D M + ++ + + +++ CN+ + I +
Sbjct: 539 FTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSL 598
Query: 144 QSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ C LR+ + Q+ K++ IC KE + + +E I+ D+RQ++N++
Sbjct: 599 VNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHI 653
Score = 37 (18.1 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 1 IEKYRPQTFSDIVG 14
++K++P + +IVG
Sbjct: 424 VDKHKPTSIKEIVG 437
>MGI|MGI:1926153 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 MGI:MGI:1926153 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 EMBL:AL645808
eggNOG:COG2256 KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568 EMBL:AB056151
EMBL:AK041886 EMBL:AK050368 EMBL:AK082078 EMBL:AK167570
EMBL:AK170542 EMBL:AK170846 EMBL:BC010482 EMBL:BC058744
EMBL:AF208046 IPI:IPI00459468 IPI:IPI00648000 RefSeq:NP_084491.3
UniGene:Mm.286680 ProteinModelPortal:Q91XU0 SMR:Q91XU0
STRING:Q91XU0 PhosphoSite:Q91XU0 PaxDb:Q91XU0 PRIDE:Q91XU0
Ensembl:ENSMUST00000021832 GeneID:78903 KEGG:mmu:78903
UCSC:uc007pzs.2 UCSC:uc007pzt.2 GeneTree:ENSGT00390000008538
InParanoid:Q91XU0 NextBio:349714 Bgee:Q91XU0 CleanEx:MM_WRNIP1
Genevestigator:Q91XU0 GermOnline:ENSMUSG00000021400 Uniprot:Q91XU0
Length = 660
Score = 138 (53.6 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 47/159 (29%), Positives = 74/159 (46%)
Query: 2 EKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
+K RP T D +G V + L+ + +P++I+ GPPG GKTT LA I+
Sbjct: 224 DKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTT----LAHIIANN 279
Query: 59 SFKDAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 116
S K ++ + L+A+N + D VR+ IK +K R I+ +DE Q
Sbjct: 280 SKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTF 336
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
+E + T A N S ++ + SRC ++ KL
Sbjct: 337 LPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKL 375
Score = 47 (21.6 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 168 CEKENISHTND-GLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVK 226
C E D ++ + + + GD R LN LQ +++ VF C +
Sbjct: 411 CSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAV--LARLSSRKVF--CKKSGQTYSP 466
Query: 227 EMLLNCVEGNMKDSYKIIHHLY 248
+L E ++K+ + H LY
Sbjct: 467 SRVL-ITENDVKEGLQRSHILY 487
>TIGR_CMR|BA_4628 [details] [associations]
symbol:BA_4628 "ATPase, AAA family" species:198094
"Bacillus anthracis str. Ames" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017111 KO:K07478
ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HOGENOM:HOG000017624 OMA:RLLVIAY RefSeq:NP_846846.1
RefSeq:YP_021276.1 RefSeq:YP_030542.1 ProteinModelPortal:Q81LJ0
SMR:Q81LJ0 DNASU:1085339 EnsemblBacteria:EBBACT00000011786
EnsemblBacteria:EBBACT00000016240 EnsemblBacteria:EBBACT00000022391
GeneID:1085339 GeneID:2814872 GeneID:2851063 KEGG:ban:BA_4628
KEGG:bar:GBAA_4628 KEGG:bat:BAS4294
BioCyc:BANT260799:GJAJ-4350-MONOMER
BioCyc:BANT261594:GJ7F-4499-MONOMER Uniprot:Q81LJ0
Length = 428
Score = 140 (54.3 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 54/207 (26%), Positives = 89/207 (42%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVF---SSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP +++G + V K+ + + ++I+ GPPG GKT+ +A G
Sbjct: 8 RMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGST-GTP 66
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
F+ +L N + ++ V + KM RH ++ILDE + Q L
Sbjct: 67 FR--LLNAVTHNKKDMEVVVQEAKMH----------RHLVLILDEVHRLDKAKQDFLLPH 114
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL---SKVIEICEKE----N 172
+E T A N I I+SRC + + LT+ LL + +E EK +
Sbjct: 115 LESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLKRALEDKEKGLGEYD 174
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQ 199
++ T + L + GDMR A N L+
Sbjct: 175 VTVTPEALHHFANASGGDMRSAYNALE 201
>RGD|628836 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10116 "Rattus norvegicus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO;ISS] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734 RGD:628836
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 138 (53.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 47/159 (29%), Positives = 74/159 (46%)
Query: 2 EKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
+K RP T D +G V + L+ + +P++I+ GPPG GKTT LA I+
Sbjct: 224 DKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTT----LAHIIANN 279
Query: 59 SFKDAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 116
S K ++ + L+A+N + D VR+ IK +K R I+ +DE Q
Sbjct: 280 SKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTF 336
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
+E + T A N S ++ + SRC ++ KL
Sbjct: 337 LPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKL 375
Score = 45 (20.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 168 CEKENISHTND-GLEAIVFTAQGDMRQALNNLQ 199
C E D ++ + + + GD R LN LQ
Sbjct: 411 CSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQ 443
>UNIPROTKB|Q8CG07 [details] [associations]
symbol:Wrnip1 "ATPase WRNIP1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 RGD:628836 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886 Pfam:PF12002
CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 138 (53.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 47/159 (29%), Positives = 74/159 (46%)
Query: 2 EKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
+K RP T D +G V + L+ + +P++I+ GPPG GKTT LA I+
Sbjct: 224 DKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTT----LAHIIANN 279
Query: 59 SFKDAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 116
S K ++ + L+A+N + D VR+ IK +K R I+ +DE Q
Sbjct: 280 SKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTF 336
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
+E + T A N S ++ + SRC ++ KL
Sbjct: 337 LPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKL 375
Score = 45 (20.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 168 CEKENISHTND-GLEAIVFTAQGDMRQALNNLQ 199
C E D ++ + + + GD R LN LQ
Sbjct: 411 CSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQ 443
>POMBASE|SPBC23E6.07c [details] [associations]
symbol:rfc1 "DNA replication factor C complex subunit
Rfc1" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006272 "leading strand elongation" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357
PomBase:SPBC23E6.07c Pfam:PF00533 GO:GO:0005524 GO:GO:0005730
GO:GO:0051301 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0007049
GO:GO:0000790 GO:GO:0043596 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389 KO:K10754
eggNOG:COG5275 EMBL:AB027931 PIR:T39941 RefSeq:NP_596607.1
ProteinModelPortal:O60182 IntAct:O60182 STRING:O60182
EnsemblFungi:SPBC23E6.07c.1 GeneID:2540426 KEGG:spo:SPBC23E6.07c
HOGENOM:HOG000164552 OMA:KLRMDER OrthoDB:EOG4WDHM8 NextBio:20801553
Uniprot:O60182
Length = 934
Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 49/182 (26%), Positives = 88/182 (48%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR----------GIDTVRNKIK 83
+++SGPPG+GKTT +A+ L G VLELNAS+ R G+ ++
Sbjct: 412 VLLSGPPGIGKTTAAHLVAK-LEGYD----VLELNASDTRSKRLLDEQLFGVTDSQSLAG 466
Query: 84 MFAQQKVTLPPGRHKIV-ILDEADSMTDGAQQALRR-TMEIYSNTTRFALACNN-SEKII 140
F + + + ++V I+DE D M+ G + + + M I + CN+ + +
Sbjct: 467 YFGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIICICNDRAHPKL 526
Query: 141 EPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQS 200
P+ LR+ + + S+++ I +E + + ++ +V Q DMRQ +N L S
Sbjct: 527 RPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIIN-LLS 585
Query: 201 TH 202
T+
Sbjct: 586 TY 587
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 55/222 (24%), Positives = 102/222 (45%)
Query: 23 KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82
++F+ N + + P GV + C+ I G F D ++E++A++ +D R +
Sbjct: 56 RLFAKGLNCETGVTASPCGVCGS----CV-EIAQG-RFVD-LIEVDAASRTKVDDTRELL 108
Query: 83 KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEP 142
Q + T GR K+ ++DE ++ + AL +T+E +F LA + +K+
Sbjct: 109 DN-VQYRPTR--GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165
Query: 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL-QST 201
+ SRC LT ++ +++ I +E + ++ L + +A G MR AL+ Q+
Sbjct: 166 VLSRCLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAI 225
Query: 202 HNGFGHVTAEYVFKVC---DEPHPLAVKEMLLNCVEGNMKDS 240
G G V V + DE H L + + L + G + S
Sbjct: 226 AFGGGTVMLNQVQSMLGSIDEQHVLGLLKALTDADIGALMQS 267
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 148 (57.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 49/176 (27%), Positives = 84/176 (47%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN---------KIKMF 85
++SGPPGVGKTTT + + L G S+ +ELNAS+ R ++++ IK F
Sbjct: 644 LLSGPPGVGKTTTASLVCKEL-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDF 698
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRTMEIYSNT-TRFALACNN-SEKIIEP 142
+ G+H ++I+DE D M + ++ + + +T CN+ + I
Sbjct: 699 CSGTSSSVSGKH-VLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCNDRNHPKIRS 757
Query: 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ C LR+ + Q+ ++ I KE + + I+ A D+RQ L+NL
Sbjct: 758 LVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNL 813
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 1 IEKYRPQTFSDIVGNE 16
++KY+P + I+G +
Sbjct: 585 VDKYKPVSLKAIIGQQ 600
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 148 (57.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 49/176 (27%), Positives = 84/176 (47%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN---------KIKMF 85
++SGPPGVGKTTT + + L G S+ +ELNAS+ R ++++ IK F
Sbjct: 648 LLSGPPGVGKTTTASLVCKEL-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDF 702
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRTMEIYSNT-TRFALACNN-SEKIIEP 142
+ G+H ++I+DE D M + ++ + + +T CN+ + I
Sbjct: 703 CSGTSSSVSGKH-VLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCNDRNHPKIRS 761
Query: 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ C LR+ + Q+ ++ I KE + + I+ A D+RQ L+NL
Sbjct: 762 LVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNL 817
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 1 IEKYRPQTFSDIVGNE 16
++KY+P + I+G +
Sbjct: 589 VDKYKPVSLKAIIGQQ 604
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 140 (54.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 46/183 (25%), Positives = 87/183 (47%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARIL----LGPSFKDAVLE--LNASNDRGIDTVRNK 81
SG ++ GPPG+GKTT +A+ L L + D + LNA +D + +
Sbjct: 343 SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNM-SV 401
Query: 82 IKMFAQ-QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNT-TRFALACN--NSE 137
+ F ++ G+H ++I+DE D M+ G + + + + T T L CN N
Sbjct: 402 VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLP 461
Query: 138 KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNN 197
K+ P C +++ + + S+++ I +E + ++ ++ T +GD+RQ +N
Sbjct: 462 KM-RPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINL 520
Query: 198 LQS 200
L +
Sbjct: 521 LST 523
>TIGR_CMR|CHY_2201 [details] [associations]
symbol:CHY_2201 "ATPase, AAA family" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0017111 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_361014.1
ProteinModelPortal:Q3AA20 STRING:Q3AA20 GeneID:3726481
KEGG:chy:CHY_2201 PATRIC:21277469 HOGENOM:HOG000017624
BioCyc:CHYD246194:GJCN-2200-MONOMER Uniprot:Q3AA20
Length = 444
Score = 136 (52.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 50/208 (24%), Positives = 93/208 (44%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFSS---SGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP++ + +G E + K+ S + ++I GPPG GKTT LARI+ +
Sbjct: 20 RMRPRSLDEFIGQEHILGEGKLLRRAILSDRLGSLIFYGPPGTGKTT----LARIIASTT 75
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
K +NA G+ +R IK +++ G ++ +DE Q AL
Sbjct: 76 -KSGFESINAVTS-GVGEIREVIKKAKEREKYY--GERTVLFIDEIHRFNKAQQDALLPE 131
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIE--ICEKEN----- 172
+E + A N ++ P+ SR + + L + + + +++ + +KE
Sbjct: 132 VEAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPL-EPEHIREIVRRALVDKERGLGEY 190
Query: 173 -ISHTNDGLEAIVFTAQGDMRQALNNLQ 199
+ + + L+ +V A GD R ALN ++
Sbjct: 191 KVEISEEALDHLVTMAAGDARAALNGIE 218
>UNIPROTKB|F1PVV3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR021886 Pfam:PF12002
OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AAEX03017467
Ensembl:ENSCAFT00000014690 Uniprot:F1PVV3
Length = 468
Score = 134 (52.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 47/158 (29%), Positives = 73/158 (46%)
Query: 3 KYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
K RP T D +G V + L+ + +P++I+ GPPG GKTT LA I+ S
Sbjct: 33 KMRPDTLQDYIGQSRAVGQDTLLRSLLETTEIPSLILWGPPGCGKTT----LAHIIANNS 88
Query: 60 FKDAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 117
K ++ + L+A+N + D VR+ IK +K R I+ +DE Q
Sbjct: 89 KKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTFL 145
Query: 118 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
+E + T A N S ++ + SRC ++ KL
Sbjct: 146 PHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKL 183
Score = 42 (19.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 180 LEAIVFTAQGDMRQALNNLQ 199
++ + + + GD R LN LQ
Sbjct: 232 VDTLAYLSDGDARAGLNGLQ 251
>TIGR_CMR|BA_4703 [details] [associations]
symbol:BA_4703 "ATP-dependent protease LonB" species:198094
"Bacillus anthracis str. Ames" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0030436 "asexual sporulation" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 PANTHER:PTHR10046 HSSP:P08177
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
InterPro:IPR014251 TIGRFAMs:TIGR02902 RefSeq:NP_846916.1
RefSeq:YP_021351.1 RefSeq:YP_030615.1 ProteinModelPortal:Q81LC0
IntAct:Q81LC0 DNASU:1083686 EnsemblBacteria:EBBACT00000010075
EnsemblBacteria:EBBACT00000014143 EnsemblBacteria:EBBACT00000022575
GeneID:1083686 GeneID:2816064 GeneID:2851723 KEGG:ban:BA_4703
KEGG:bar:GBAA_4703 KEGG:bat:BAS4368
BioCyc:BANT260799:GJAJ-4423-MONOMER
BioCyc:BANT261594:GJ7F-4571-MONOMER Uniprot:Q81LC0
Length = 557
Score = 120 (47.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 32/77 (41%), Positives = 41/77 (53%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTI-LCLARILLGPS- 59
EK RP +F DIVG ED ++ LK N ++II GPPGVGKT L L P
Sbjct: 62 EKVRPTSFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRNPKS 121
Query: 60 -FKD--AVLELNASNDR 73
F+ +EL+A+ R
Sbjct: 122 PFRTNATFIELDATTAR 138
Score = 59 (25.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 128 RFALACNNSEKIIEP-IQSRCAMLRYNKLTDAQLLSKVIE-ICEKENISHTNDGLEAIVF 185
R A S + I P I+SRC + + +L D + + KV + +K + +G+E I
Sbjct: 240 RLVGATTRSPEEIPPAIRSRCLEVFFREL-DTEEIQKVAKNAADKVEMQIGENGIEMIGM 298
Query: 186 TAQGDMRQALNNLQ 199
A+ R+A+N +Q
Sbjct: 299 YARNG-REAINLVQ 311
>DICTYBASE|DDB_G0272158 [details] [associations]
symbol:wrnip1 "putative Werner helicase-interacting
protein 1" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008824
Pfam:PF05496 SMART:SM00382 dictyBase:DDB_G0272158 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006260 GO:GO:0006281
GenomeReviews:CM000151_GR GO:GO:0006310 EMBL:AAFI02000008
GO:GO:0009378 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
RefSeq:XP_645251.1 ProteinModelPortal:Q75JU2 STRING:Q75JU2
EnsemblProtists:DDB0305118 GeneID:8618418 KEGG:ddi:DDB_G0272158
InParanoid:Q75JU2 Uniprot:Q75JU2
Length = 876
Score = 138 (53.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 57/208 (27%), Positives = 94/208 (45%)
Query: 2 EKYRPQTFSDIVGNE-----DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILL 56
E+ RP SD +G E D + + K+F S +P+ I+ GPPG GKTT LA+I+
Sbjct: 199 EQMRPTELSDFIGQESLLVGDPIVK-KLFQSP-ELPSFILYGPPGCGKTT----LAQIVA 252
Query: 57 GPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 116
S + + L+A G+ ++ I + + TL G+ I+ +DE Q L
Sbjct: 253 SKSNYN-INALSAVGS-GVKDIKEVID---KARNTLQFGKKTILFIDEIHRYNKLQQDVL 307
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL---LSKVIEICE---K 170
+E A N S ++ + SRC + + KLT L + + +E+
Sbjct: 308 LPAIESGIIILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLEVTPLLMD 367
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ D ++++ A GD R A+N L
Sbjct: 368 RRLIMDEDAIKSLAEIADGDARVAINVL 395
>UNIPROTKB|F1RWX5 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:CU041352
Ensembl:ENSSSCT00000001102 Uniprot:F1RWX5
Length = 512
Score = 126 (49.4 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 47/159 (29%), Positives = 73/159 (45%)
Query: 2 EKYRPQTFSDIVGNEDTV--ERL-KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
++ RP D VG V E L + + VP++I+ GPPG GKTT LA I+
Sbjct: 76 DRLRPDALQDFVGQGRAVGPETLLRSLLEANEVPSLILWGPPGCGKTT----LAHIIANN 131
Query: 59 SFKDAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 116
S K ++ + L+A++ + D VR+ IK +K R I+ +DE Q
Sbjct: 132 SKKHSIRFVTLSATSAKTTD-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTF 188
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
+E + T A N S ++ + SRC ++ KL
Sbjct: 189 LPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKL 227
Score = 50 (22.7 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVF-KVCDEPHPLAVKEMLLNCVEGNMK 238
++ + + GD R LN LQ ++A VF K + +P +L+ EG++K
Sbjct: 276 VDTLAHLSDGDARAGLNGLQLAV--LARLSARKVFGKKTGQTYPPG--RVLVT--EGDVK 329
Query: 239 DSYKIIHHLY 248
+ + H LY
Sbjct: 330 EGLQRSHILY 339
>TIGR_CMR|CHY_0040 [details] [associations]
symbol:CHY_0040 "putative ATP-dependent protease La"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006508 "proteolysis" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006508 GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
InterPro:IPR025943 PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067
PANTHER:PTHR10046 KO:K01338 HOGENOM:HOG000054711
ProtClustDB:CLSK873492 RefSeq:YP_358912.1 ProteinModelPortal:Q3AG22
STRING:Q3AG22 MEROPS:S16.005 GeneID:3728432 KEGG:chy:CHY_0040
PATRIC:21273277 OMA:PENAQTL BioCyc:CHYD246194:GJCN-40-MONOMER
InterPro:IPR014252 TIGRFAMs:TIGR02903 Uniprot:Q3AG22
Length = 632
Score = 107 (42.7 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 5 RPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTI-LCL 51
RP++FS+IVG E + L SS +I++ GPPGVGKTT LCL
Sbjct: 160 RPRSFSEIVGQERAIRALLAKLSSPFPQHILLYGPPGVGKTTAARLCL 207
Score = 70 (29.7 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 132 ACNNSEKIIEP-IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV-FTAQG 189
A S + I P ++SRCA + + L A++ V++ +K N+ D E I +T +G
Sbjct: 340 ATTRSPEEINPALRSRCAEIFFEPLGPAEIKEIVLKAAQKLNVKLAPDVPELIAGYTVEG 399
Query: 190 DMRQALNNL 198
R+A+N L
Sbjct: 400 --RKAVNIL 406
Score = 40 (19.1 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 260 NIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGV 293
N+ R + T +I + L + Q +G+V L I EG+
Sbjct: 443 NLVRGSDTYEIGKVFGLGVYQYLGSV-LEI-EGI 474
>WB|WBGene00004337 [details] [associations]
symbol:rfc-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006260 GO:GO:0000003 GO:GO:0006974 eggNOG:COG0470
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:Z75532 PIR:T20230
RefSeq:NP_001256606.1 ProteinModelPortal:Q18841 SMR:Q18841
IntAct:Q18841 MINT:MINT-228102 STRING:Q18841 PaxDb:Q18841
EnsemblMetazoa:C54G10.2a GeneID:179967 KEGG:cel:CELE_C54G10.2
UCSC:C54G10.2 CTD:179967 WormBase:C54G10.2a HOGENOM:HOG000017534
InParanoid:Q18841 OMA:DYAPMLR NextBio:907580 Uniprot:Q18841
Length = 839
Score = 138 (53.6 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 52/187 (27%), Positives = 86/187 (45%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI---------KMF 85
++SG PGVGKTT +A LG ++E+NAS+ R + KI + F
Sbjct: 344 LLSGSPGVGKTTCAY-MACQQLGLQ----LVEMNASDVRSKKHLEAKIGELSGSHQIEQF 398
Query: 86 AQQKVTLPPGR---HKIVILDEADSMTDGAQQA-LRRTMEIYSNTT-RFALACNNSEKI- 139
K P H I+I+DE D M+ +A + ++I + CN+ +
Sbjct: 399 FGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICNDRQHPK 458
Query: 140 IEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199
I + + C LR+ K + S+++ IC +E + + L+ I+ + D+RQ + NLQ
Sbjct: 459 IRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQ 518
Query: 200 STHNGFG 206
G G
Sbjct: 519 MRSKGVG 525
Score = 41 (19.5 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1 IEKYRPQTFSDIVG-NED 17
++KY+P+ ++VG N D
Sbjct: 281 VDKYKPKRMGELVGQNGD 298
>POMBASE|SPAC26H5.02c [details] [associations]
symbol:SPAC26H5.02c "DNA replication ATPase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000731
"DNA synthesis involved in DNA repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR006642 Pfam:PF00004 SMART:SM00382
SMART:SM00734 PomBase:SPAC26H5.02c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0000731
GO:GO:0043142 GO:GO:0033567 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF InterPro:IPR021886 Pfam:PF12002 HSSP:P38251
PIR:T38421 RefSeq:NP_594449.2 ProteinModelPortal:O13984
STRING:O13984 EnsemblFungi:SPAC26H5.02c.1 GeneID:2542096
KEGG:spo:SPAC26H5.02c OrthoDB:EOG4Z924S NextBio:20803168
Uniprot:O13984
Length = 504
Score = 133 (51.9 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 58/208 (27%), Positives = 90/208 (43%)
Query: 2 EKYRPQTFSDIVGNEDTV-ER--LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
E+ RP++ + VG E+ V ER ++ ++I+ G G GKTT LAR L+
Sbjct: 88 ERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTT----LAR-LIAV 142
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
+ K +E++A++ D KI +Q +TL GR I+ LDE Q
Sbjct: 143 TTKSRFIEISATSTTVADC--RKIFEDSQNYLTLT-GRKTIIFLDEVHRFNRAQQDIFLP 199
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEIC--EKENISHT 176
+E T A N S ++ + SRC + KLT + + C E E + +
Sbjct: 200 MVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHACLLESERLGSS 259
Query: 177 NDGLEAIVFT-----AQGDMRQALNNLQ 199
+E + GD R ALN L+
Sbjct: 260 MPNVETSIIDYISAITDGDARMALNALE 287
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 137 (53.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 48/176 (27%), Positives = 81/176 (46%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR---------NKIKMF 85
++SGPPGVGKTTT + + L G S+ +ELNAS+ R ++++ IK F
Sbjct: 631 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKAIVAESLNNTSIKGF 685
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRTMEIYSNTT-RFALACNN-SEKIIEP 142
+ +I+DE D M + ++ + + +T CN+ + I
Sbjct: 686 YTSGASPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRS 745
Query: 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ C LR+ + Q+ S ++ I KE + + I+ A D+RQ L+NL
Sbjct: 746 LVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNL 801
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 1 IEKYRPQTFSDIVGNE 16
++KY+P + +I+G +
Sbjct: 571 VDKYKPTSLKNIIGQQ 586
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 136 (52.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 48/176 (27%), Positives = 80/176 (45%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVR---------NKIKMF 85
++SGPPGVGKTTT + + L G S+ +ELNAS+ R ++++ IK F
Sbjct: 632 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKAVVAESLNNTSIKGF 686
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRTMEIYSNTT-RFALACNN-SEKIIEP 142
+I+DE D M + ++ + + +T CN+ + I
Sbjct: 687 YTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRS 746
Query: 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ C LR+ + Q+ S ++ I KE + + I+ A D+RQ L+NL
Sbjct: 747 LVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNL 802
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 1 IEKYRPQTFSDIVGNE 16
++KY+P + +I+G +
Sbjct: 571 VDKYKPASLKNIIGQQ 586
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 133 (51.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 47/177 (26%), Positives = 80/177 (45%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN---------KIKMF 85
++SGPPGVGKTTT + L G S+ +E+NAS R ++++ IK F
Sbjct: 641 LLSGPPGVGKTTTAALVCEEL-GYSY----VEMNASCTRSKNSLKEVIAESLNNTSIKNF 695
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALAC----NNSEKIIE 141
+H ++I+DE D M + + M ++ + C N +KI
Sbjct: 696 YTGASQTVSSKH-VLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKI-R 753
Query: 142 PIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ + C LR+ + Q+ ++ I KE + L ++ + D+RQ L+NL
Sbjct: 754 SLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNL 810
Score = 45 (20.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 1 IEKYRPQTFSDIVGNE 16
++KYRP++ +++G +
Sbjct: 579 VDKYRPRSLKNLIGQQ 594
>UNIPROTKB|Q9KSZ8 [details] [associations]
symbol:VC_1108 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0017111 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 PIR:G82241
RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8 SMR:Q9KSZ8
DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108 PATRIC:20081310
Uniprot:Q9KSZ8
Length = 449
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 49/207 (23%), Positives = 96/207 (46%)
Query: 3 KYRPQTFSDIVGNEDTV---ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RPQT +G + + + L+ +G++ ++I+ GPPG GKTT LA + +
Sbjct: 20 RMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTT----LAEV--AAN 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ +A +E ++ G+ +R I+ + K++ GR I+ +DE Q A
Sbjct: 74 YANAEVERVSAVTSGVKEIRAAIEKARENKLS---GRRTILFVDEVHRFNKSQQDAFLPH 130
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIE-ICEKEN----IS 174
+E + T A N S ++ + SR + + L ++L + + I + E ++
Sbjct: 131 IEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGLGKVA 190
Query: 175 --HTNDGLEAIVFTAQGDMRQALNNLQ 199
++ L+ + GD R +LN L+
Sbjct: 191 AVFADNVLDRLAELVNGDARMSLNYLE 217
>TIGR_CMR|VC_1108 [details] [associations]
symbol:VC_1108 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HSSP:Q56313 PIR:G82241 RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8
SMR:Q9KSZ8 DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108
PATRIC:20081310 Uniprot:Q9KSZ8
Length = 449
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 49/207 (23%), Positives = 96/207 (46%)
Query: 3 KYRPQTFSDIVGNEDTV---ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RPQT +G + + + L+ +G++ ++I+ GPPG GKTT LA + +
Sbjct: 20 RMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTT----LAEV--AAN 73
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ +A +E ++ G+ +R I+ + K++ GR I+ +DE Q A
Sbjct: 74 YANAEVERVSAVTSGVKEIRAAIEKARENKLS---GRRTILFVDEVHRFNKSQQDAFLPH 130
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIE-ICEKEN----IS 174
+E + T A N S ++ + SR + + L ++L + + I + E ++
Sbjct: 131 IEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGLGKVA 190
Query: 175 --HTNDGLEAIVFTAQGDMRQALNNLQ 199
++ L+ + GD R +LN L+
Sbjct: 191 AVFADNVLDRLAELVNGDARMSLNYLE 217
>CGD|CAL0000272 [details] [associations]
symbol:orf19.3601 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 CGD:CAL0000272 GO:GO:0005524 GO:GO:0017111
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG2256
RefSeq:XP_714445.1 RefSeq:XP_714494.1 ProteinModelPortal:Q59Y48
GeneID:3643833 GeneID:3643882 KEGG:cal:CaO19.11084
KEGG:cal:CaO19.3601 Uniprot:Q59Y48
Length = 547
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 52/195 (26%), Positives = 90/195 (46%)
Query: 2 EKYRPQTFSDIVGNEDTVE----RLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
E RP TF VG + + ++ F G +P++I +GP G+GKTT LA ++
Sbjct: 28 EAIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPSMIFTGPSGIGKTT----LASVI-- 81
Query: 58 PSFKDAV--LELNASNDRGID---TVRNKIKMFAQQKVTLPPGRHKIVI-LDEADSMTDG 111
S++ + LEL+A+ +D T+ K + + + G KIV+ +DE +T
Sbjct: 82 -SYECGLPFLELSATTMTTMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKI 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
Q L +E A + +I + I SRC + + KLT ++ + + +
Sbjct: 141 QQDWLLPYLENGEIVLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAITFQ 200
Query: 172 NISHTN-DGLEAIVF 185
N+ + L AIV+
Sbjct: 201 NLKRKHLYQLGAIVY 215
>UNIPROTKB|Q59Y48 [details] [associations]
symbol:CaO19.11084 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 CGD:CAL0000272 GO:GO:0005524 GO:GO:0017111
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG2256
RefSeq:XP_714445.1 RefSeq:XP_714494.1 ProteinModelPortal:Q59Y48
GeneID:3643833 GeneID:3643882 KEGG:cal:CaO19.11084
KEGG:cal:CaO19.3601 Uniprot:Q59Y48
Length = 547
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 52/195 (26%), Positives = 90/195 (46%)
Query: 2 EKYRPQTFSDIVGNEDTVE----RLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
E RP TF VG + + ++ F G +P++I +GP G+GKTT LA ++
Sbjct: 28 EAIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPSMIFTGPSGIGKTT----LASVI-- 81
Query: 58 PSFKDAV--LELNASNDRGID---TVRNKIKMFAQQKVTLPPGRHKIVI-LDEADSMTDG 111
S++ + LEL+A+ +D T+ K + + + G KIV+ +DE +T
Sbjct: 82 -SYECGLPFLELSATTMTTMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKI 140
Query: 112 AQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
Q L +E A + +I + I SRC + + KLT ++ + + +
Sbjct: 141 QQDWLLPYLENGEIVLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAITFQ 200
Query: 172 NISHTN-DGLEAIVF 185
N+ + L AIV+
Sbjct: 201 NLKRKHLYQLGAIVY 215
>UNIPROTKB|Q96S55 [details] [associations]
symbol:WRNIP1 "ATPase WRNIP1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IMP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
EMBL:CH471087 GO:GO:0000731 GO:GO:0030174 PDB:3VHT PDBsum:3VHT
EMBL:AL139092 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
EMBL:AB056152 EMBL:AK026179 EMBL:AK315471 EMBL:AB209723
EMBL:AK223593 EMBL:BC018923 EMBL:AF218313 IPI:IPI00102997
IPI:IPI00290314 IPI:IPI00642533 IPI:IPI00645459 RefSeq:NP_064520.2
RefSeq:NP_569079.1 UniGene:Hs.236828 PDB:3VHS PDBsum:3VHS
ProteinModelPortal:Q96S55 SMR:Q96S55 IntAct:Q96S55 STRING:Q96S55
PhosphoSite:Q96S55 DMDM:73622085 PaxDb:Q96S55 PRIDE:Q96S55
DNASU:56897 Ensembl:ENST00000380764 Ensembl:ENST00000380769
Ensembl:ENST00000380771 Ensembl:ENST00000380773 GeneID:56897
KEGG:hsa:56897 UCSC:uc003mtz.3 UCSC:uc003mua.3 CTD:56897
GeneCards:GC06P002710 H-InvDB:HIX0005529 HGNC:HGNC:20876
HPA:HPA031752 MIM:608196 neXtProt:NX_Q96S55 PharmGKB:PA134982239
HOVERGEN:HBG062192 InParanoid:Q96S55 OMA:PGHWDAD OrthoDB:EOG457568
PhylomeDB:Q96S55 GenomeRNAi:56897 NextBio:62333 Bgee:Q96S55
CleanEx:HS_WRNIP1 Genevestigator:Q96S55 GermOnline:ENSG00000124535
Uniprot:Q96S55
Length = 665
Score = 129 (50.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 46/156 (29%), Positives = 71/156 (45%)
Query: 5 RPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
RP T D G V + L+ + +P++I+ GPPG GKTT LA I+ S K
Sbjct: 232 RPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHIIASNSKK 287
Query: 62 DAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ + L+A+N + D VR+ IK +K R I+ +DE Q
Sbjct: 288 HSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTFLPH 344
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
+E + T A N S ++ + SRC ++ KL
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVIVLEKL 380
Score = 42 (19.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 180 LEAIVFTAQGDMRQALNNLQ 199
++ + + + GD R LN LQ
Sbjct: 429 VDTLAYLSDGDARAGLNGLQ 448
>ASPGD|ASPL0000007447 [details] [associations]
symbol:uvsF species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005663 "DNA replication
factor C complex" evidence=ISA] [GO:0006260 "DNA replication"
evidence=ISA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0006260 EMBL:AACD01000107 EMBL:BN001301
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 HOGENOM:HOG000164552
OrthoDB:EOG4WDHM8 RefSeq:XP_663907.1 ProteinModelPortal:Q5AZH7
STRING:Q5AZH7 EnsemblFungi:CADANIAT00006686 GeneID:2871090
KEGG:ani:AN6303.2 OMA:PKMKPFD Uniprot:Q5AZH7
Length = 1092
Score = 127 (49.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 48/186 (25%), Positives = 86/186 (46%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR-------GIDTVRN 80
SG +++I GPPG+GKTT +A+ L G V+E NAS+ R G+ V +
Sbjct: 516 SGLYRSVMIHGPPGIGKTTAAHLVAK-LEGYD----VVESNASDTRSKKLVESGLLGVLD 570
Query: 81 KIKM---FAQQKVTLPPGRHKIV-ILDEADSMTDGAQQALRRTMEIYSNTT-RFALACNN 135
+ F+ + G+ +V I+DE D M+ G + + I T L CN
Sbjct: 571 TTSLQGYFSTSNKKVESGKKNLVLIMDEVDGMSAGDRGGVGAMAAIAKKTQIPLILICNE 630
Query: 136 SE-KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQA 194
++P + + + T Q+ ++++ IC +E + L++++ D+RQ
Sbjct: 631 RRLPKMKPFDHVTFEIPFRRPTVEQVRARLLTICFREKMKIPPQVLDSLIEGTHADIRQV 690
Query: 195 LNNLQS 200
+N L +
Sbjct: 691 INMLSA 696
Score = 48 (22.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVF 25
KY P + + I GN+ VE+L+ +
Sbjct: 474 KYAPTSLNMICGNKGAVEKLQAW 496
>ZFIN|ZDB-GENE-040426-2415 [details] [associations]
symbol:wrnip1 "Werner helicase interacting protein
1" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-040426-2415 GO:GO:0005524 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886
Pfam:PF12002 CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD
OrthoDB:EOG457568 GeneTree:ENSGT00390000008538 EMBL:CU693494
EMBL:BC067729 IPI:IPI00503321 RefSeq:NP_998085.1 UniGene:Dr.82012
STRING:Q6NW46 Ensembl:ENSDART00000004848 GeneID:405856
KEGG:dre:405856 InParanoid:Q6NW46 NextBio:20817818 Uniprot:Q6NW46
Length = 546
Score = 127 (49.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 56/220 (25%), Positives = 92/220 (41%)
Query: 2 EKYRPQTFSDIVGNEDTV-ER--LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
E RP T + G + E+ L+ S +P++I+ GPPG GKTT +A +
Sbjct: 119 ELLRPSTLEEYFGQNKLIGEQTLLRSLLKSQEIPSLILWGPPGCGKTTLAHIIASSIKQK 178
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
+ L+A++ + VR IK AQ ++ L R ++ +DE Q
Sbjct: 179 G-TGRFVTLSATS-ASVSDVREVIKQ-AQNELRLCK-RKTVLFIDEIHRFNKSQQDTFLP 234
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLT-DA--QLLSKVI---------- 165
+E + T A N S ++ + SRC +L +L+ +A +L + +
Sbjct: 235 HVECGTITLIGATTENPSFQVNSALLSRCRVLVLERLSVEAVGSILRRAVDFLDLRILDS 294
Query: 166 ------EICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199
EIC + + L+ + GD R ALN LQ
Sbjct: 295 EERHSSEICSEAQVCVEQKALDTLAHLCDGDARAALNGLQ 334
>UNIPROTKB|Q607H8 [details] [associations]
symbol:MCA1782 "ATPase, AAA family" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:AE017282 GenomeReviews:AE017282_GR
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 RefSeq:YP_114220.1
ProteinModelPortal:Q607H8 SMR:Q607H8 GeneID:3102211
KEGG:mca:MCA1782 PATRIC:22607406 Uniprot:Q607H8
Length = 435
Score = 125 (49.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 58/213 (27%), Positives = 93/213 (43%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSS---GNVPNIIISGPPGVGKTTTILCLARILLGP 58
++ RP+T + +G +E + S G + ++I GPPG GKTT LAR++
Sbjct: 11 DRLRPRTLDEYIGQLHLIEPGRPLYESIRRGRLHSMIFWGPPGTGKTT----LARLVARH 66
Query: 59 SFKDA-VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 117
+ DA L ++A G+ +R + Q K GR I+ +DE Q A
Sbjct: 67 A--DAEFLPVSAVLS-GVKEIREALARAVQFKAA---GRRAILFVDEVHRFNKSQQDAFL 120
Query: 118 RTMEIYSNTTRF--ALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLS---KVIEICEK-- 170
+E T F A N S ++ + SR + LT+A LL + + E+
Sbjct: 121 AHVE--DGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLLGVIDRALSDAERGL 178
Query: 171 --ENISHTNDGLEAIVFTAQGDMRQALNNLQST 201
++ ++ A V A GD R+ LN L+ T
Sbjct: 179 GGRGLNMSDPVRMAYVRAADGDARRLLNLLEIT 211
>UNIPROTKB|Q2GG32 [details] [associations]
symbol:ECH_0803 "Putative uncharacterized protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0017111 eggNOG:COG0470 KO:K02341
RefSeq:YP_507601.1 ProteinModelPortal:Q2GG32 STRING:Q2GG32
GeneID:3927824 KEGG:ech:ECH_0803 PATRIC:20577034
HOGENOM:HOG000063483 OMA:VREMKNF ProtClustDB:CLSK749552
BioCyc:ECHA205920:GJNR-806-MONOMER Uniprot:Q2GG32
Length = 295
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 47/195 (24%), Positives = 94/195 (48%)
Query: 30 NVPNIIISGPPGVGKTTTILCLARILLGPSFKDA----VLELNASNDR-GIDTVRNKIKM 84
++ + +I G G+GK T A+ L ++ + +L +N + + GID +RN IK
Sbjct: 19 HIQSWLIYGNRGIGKATLAYRFAKYLTQSTYLNHYNPDLLTINDNEEIIGIDKIRN-IKN 77
Query: 85 FAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQ 144
F ++ +++IVI+D DS+T A A+ + +E N + L +N ++ ++
Sbjct: 78 FLY--LSTARLKYRIVIVDSIDSLTINATNAMLKILEETPNNSIIILISHNLHEVPTVVR 135
Query: 145 SRCAMLRYNKLTDA---QLLSKVIEICEKENISHTNDGLEAIV---FTAQGDMRQALNNL 198
SRC L + L Q++ + + ISH G +V + ++ +AL ++
Sbjct: 136 SRCFTLGLSDLNPQETQQVIQNNFPHLDHKKISHIYPGTPGMVGQHIDQEIELYKALISI 195
Query: 199 QSTHNGFGHVTAEYV 213
+ N + ++T E +
Sbjct: 196 LT--NQYNNITIENI 208
>TIGR_CMR|ECH_0803 [details] [associations]
symbol:ECH_0803 "conserved hypothetical protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0017111 eggNOG:COG0470 KO:K02341
RefSeq:YP_507601.1 ProteinModelPortal:Q2GG32 STRING:Q2GG32
GeneID:3927824 KEGG:ech:ECH_0803 PATRIC:20577034
HOGENOM:HOG000063483 OMA:VREMKNF ProtClustDB:CLSK749552
BioCyc:ECHA205920:GJNR-806-MONOMER Uniprot:Q2GG32
Length = 295
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 47/195 (24%), Positives = 94/195 (48%)
Query: 30 NVPNIIISGPPGVGKTTTILCLARILLGPSFKDA----VLELNASNDR-GIDTVRNKIKM 84
++ + +I G G+GK T A+ L ++ + +L +N + + GID +RN IK
Sbjct: 19 HIQSWLIYGNRGIGKATLAYRFAKYLTQSTYLNHYNPDLLTINDNEEIIGIDKIRN-IKN 77
Query: 85 FAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQ 144
F ++ +++IVI+D DS+T A A+ + +E N + L +N ++ ++
Sbjct: 78 FLY--LSTARLKYRIVIVDSIDSLTINATNAMLKILEETPNNSIIILISHNLHEVPTVVR 135
Query: 145 SRCAMLRYNKLTDA---QLLSKVIEICEKENISHTNDGLEAIV---FTAQGDMRQALNNL 198
SRC L + L Q++ + + ISH G +V + ++ +AL ++
Sbjct: 136 SRCFTLGLSDLNPQETQQVIQNNFPHLDHKKISHIYPGTPGMVGQHIDQEIELYKALISI 195
Query: 199 QSTHNGFGHVTAEYV 213
+ N + ++T E +
Sbjct: 196 LT--NQYNNITIENI 208
>UNIPROTKB|F1P1N3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030174 "regulation
of DNA-dependent DNA replication initiation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AC157662
IPI:IPI00597973 Ensembl:ENSGALT00000020968 ArrayExpress:F1P1N3
Uniprot:F1P1N3
Length = 559
Score = 125 (49.1 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 46/160 (28%), Positives = 73/160 (45%)
Query: 2 EKYRPQTFSDIVGNEDTVER---LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
++ RP T D VG E + L+ S +P++I+ GPPG GKTT LA I+
Sbjct: 122 DRLRPDTLRDYVGQERVLGAHTLLRSLLESHEIPSLILWGPPGCGKTT----LAHIIANS 177
Query: 59 SFKDAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 116
S K + + L+A++ + D VR+ I +K R I+ +DE Q
Sbjct: 178 SKKKGMRFVTLSATSAKTND-VRDVISQAQNEKRLFK--RKTILFIDEIHRFNKSQQDTF 234
Query: 117 RRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLT 156
+E + T A N S ++ + SRC ++ KL+
Sbjct: 235 LPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLS 274
Score = 42 (19.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 180 LEAIVFTAQGDMRQALNNLQ 199
L + + GD R LN LQ
Sbjct: 323 LSTLAYLCDGDARTGLNGLQ 342
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 132 (51.5 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 48/176 (27%), Positives = 79/176 (44%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG--------IDTVRN-KIKMF 85
++SGPPGVGKTTT + + L G S+ +ELNAS+ R +++ N IK F
Sbjct: 648 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKSSLKAIVAESLNNTSIKGF 702
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRTMEIYSNTT-RFALACNN-SEKIIEP 142
+I+DE D M + ++ + + +T CN+ + I
Sbjct: 703 YSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRS 762
Query: 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ C LR+ + Q+ ++ I KE + + I+ A D+RQ L+NL
Sbjct: 763 LVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 818
Score = 40 (19.1 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 1 IEKYRPQTFSDIVGNE 16
++KY+P + I+G +
Sbjct: 587 VDKYKPTSLKTIIGQQ 602
>DICTYBASE|DDB_G0272758 [details] [associations]
symbol:chtf18 "chromosome transmission fidelity
protein 18 homolog" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 dictyBase:DDB_G0272758 GO:GO:0005524
EMBL:AAFI02000008 GO:GO:0017111 eggNOG:COG0470 KO:K11269
RefSeq:XP_001134625.1 ProteinModelPortal:Q86L47
EnsemblProtists:DDB0232234 GeneID:8618623 KEGG:ddi:DDB_G0272758
InParanoid:Q86L47 OMA:QPEGESM ProtClustDB:CLSZ2497422
Uniprot:Q86L47
Length = 937
Score = 96 (38.9 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 28/115 (24%), Positives = 54/115 (46%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
I+++G PG+GKTT LA +L + + V E+NAS DR + +K+ + K
Sbjct: 281 ILLTGGPGLGKTT----LAHVLAKQANYNPV-EINASEDRSGEAFESKLLSAIEMKSLFN 335
Query: 94 PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCA 148
+ +I+DE D ++ + +++ N+ + N+ + P + A
Sbjct: 336 DNKPNCLIIDEIDGISGRDNGPIELLIKLIDNSLKLG---NHKKSTTNPAAKKSA 387
Score = 71 (30.1 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 133 CNNSE-KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDM 191
CN+ + ++ + + + LLS++ IC E +S T+ L A++ D+
Sbjct: 442 CNDQYVPSLRKLRQKAMVFDFQAPKKNDLLSRLKVICSNEGLSATDATLNALIDMTGSDI 501
Query: 192 RQALNNLQ 199
R +N+LQ
Sbjct: 502 RACINSLQ 509
Score = 45 (20.9 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFS 26
++KY P +F D++ DT L+V +
Sbjct: 165 VDKYAPTSFHDLLS--DTTMNLEVLN 188
>SGD|S000005162 [details] [associations]
symbol:MGS1 "Protein with DNA-dependent ATPase and ssDNA
annealing activities" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008047 "enzyme activator activity" evidence=IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IDA] [GO:0006282
"regulation of DNA repair" evidence=IGI] [GO:0043130 "ubiquitin
binding" evidence=ISS] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000767 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PRINTS:PR00364 PROSITE:PS00674
SMART:SM00382 SMART:SM00734 SGD:S000005162 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006952 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006947 GO:GO:0008047
GO:GO:0043130 GO:GO:0000733 GO:GO:0006282 GO:GO:0043142
GO:GO:0033567 EMBL:X78898 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 InterPro:IPR021886 Pfam:PF12002 OMA:PGHWDAD
GeneTree:ENSGT00390000008538 OrthoDB:EOG4Z924S EMBL:Z71493
EMBL:Z71494 EMBL:AY693190 PIR:S63176 RefSeq:NP_014181.1
ProteinModelPortal:P40151 SMR:P40151 DIP:DIP-1638N IntAct:P40151
MINT:MINT-392746 STRING:P40151 PaxDb:P40151 EnsemblFungi:YNL218W
GeneID:855503 KEGG:sce:YNL218W CYGD:YNL218w NextBio:979505
Genevestigator:P40151 GermOnline:YNL218W Uniprot:P40151
Length = 587
Score = 124 (48.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 65/225 (28%), Positives = 97/225 (43%)
Query: 2 EKYRPQTFSDIVGNEDTVER----LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLG 57
EK RP+ D VG + + + L + G +P++I+ GPPGVGKT+ LAR+L
Sbjct: 137 EKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTS----LARLLT- 191
Query: 58 PSFKDAVLELNASNDRG----IDTVRNKIK------MFAQQKVTLP-PGRHKIVILDEAD 106
K A N SN I+T K +F + K R ++ +DE
Sbjct: 192 ---KTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIH 248
Query: 107 SMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL---LSK 163
Q L +E A N S ++ + SRC + KL +L LS+
Sbjct: 249 RFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCIVLSR 308
Query: 164 VIEI---CEKE--NISH----TNDGLEAIVFTAQGDMRQALNNLQ 199
I + C K+ NI + + LE +V + GD R+ALN L+
Sbjct: 309 GIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLE 353
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 131 (51.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 47/176 (26%), Positives = 79/176 (44%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRN---------KIKMF 85
++SGPPGVGKTTT + + L G S+ +ELNAS+ R ++++ IK F
Sbjct: 647 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKEIIAESLNNTSIKGF 701
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRTMEIYSNTT-RFALACNN-SEKIIEP 142
+I+DE D M + ++ + + +T CN+ + I
Sbjct: 702 YSSGAAHSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRS 761
Query: 143 IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL 198
+ C LR+ + Q+ ++ I KE + + I+ A D+RQ L+NL
Sbjct: 762 LVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 817
Score = 40 (19.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 1 IEKYRPQTFSDIVGNE 16
++KY+P + I+G +
Sbjct: 586 VDKYKPASLKTIIGQQ 601
>TIGR_CMR|CJE_0191 [details] [associations]
symbol:CJE_0191 "ATPase, AAA family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496
SMART:SM00382 GO:GO:0000166 GO:GO:0006281 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0006310 GO:GO:0009378
eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 HOGENOM:HOG000017624 RefSeq:YP_178215.1
ProteinModelPortal:Q5HWX0 STRING:Q5HWX0 GeneID:3230954
KEGG:cjr:CJE0191 PATRIC:20042091 OMA:RLLVIAY
BioCyc:CJEJ195099:GJC0-196-MONOMER Uniprot:Q5HWX0
Length = 393
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 50/197 (25%), Positives = 90/197 (45%)
Query: 4 YRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDA 63
+RP+ F DI+G + +E K F++ +P+ I G G GKTT AR++ F
Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTT----FARVV-AKEFGLD 61
Query: 64 VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHK-IVILDEADSMTDGAQQALRRTMEI 122
E + N + ++ +R K+ K +L +K ++ +DE ++ Q+ L ME
Sbjct: 62 FYEFDGGNFK-LEELR---KILDNYKNSL----YKPLIFIDEIHRLSKTQQEMLLIPMEN 113
Query: 123 YSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEA 182
Y A N + I+SR + + L +L + ++ + EK S + +
Sbjct: 114 YRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDF 173
Query: 183 IVFTAQGDMRQALNNLQ 199
++ +A D R LN L+
Sbjct: 174 LLKSA--DARAMLNLLE 188
>UNIPROTKB|F1MGL0 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538
EMBL:DAAA02055908 IPI:IPI00867370 Ensembl:ENSBTAT00000044289
Uniprot:F1MGL0
Length = 489
Score = 122 (48.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 47/156 (30%), Positives = 71/156 (45%)
Query: 5 RPQTFSDIVGNEDTV--ERL-KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFK 61
RP D VG V E L + + VP++I+ GPPG GKTT LA I+ S K
Sbjct: 56 RPDALQDFVGQGRAVGPETLLRSLLEASEVPSLILWGPPGCGKTT----LAHIIANNSKK 111
Query: 62 DAV--LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
++ + L+A++ + D VR+ IK +K R I+ +DE Q
Sbjct: 112 HSIRFVTLSATSAKTTD-VRDVIKQAQNEKRFFK--RKTILFIDEIHRFNKSQQDTFLPH 168
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKL 155
+E + T A N S ++ + SRC ++ KL
Sbjct: 169 VECGTITLIGATTENPSFQVNAALLSRCRVIVLEKL 204
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 180 LEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVF-KVCDEPHPLAVKEMLLNCVEGNMK 238
++ + + GD R LN LQ ++A F K + +P + +L+ E ++K
Sbjct: 253 VDTLAHLSDGDARAGLNGLQLAV--LARLSARKTFGKKGGQSYPPS--RVLVT--ESDVK 306
Query: 239 DSYKIIHHLY 248
+ + H LY
Sbjct: 307 EGLQRSHILY 316
>UNIPROTKB|P0AAZ4 [details] [associations]
symbol:rarA species:83333 "Escherichia coli K-12"
[GO:0030894 "replisome" evidence=IDA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006261 GO:GO:0006310 GO:GO:0017111
GO:GO:0030894 EMBL:D49398 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
EMBL:X05017 PIR:C64828 RefSeq:NP_415412.1 RefSeq:YP_489164.1
ProteinModelPortal:P0AAZ4 SMR:P0AAZ4 DIP:DIP-48151N IntAct:P0AAZ4
MINT:MINT-1224512 PRIDE:P0AAZ4 EnsemblBacteria:EBESCT00000001727
EnsemblBacteria:EBESCT00000016690 GeneID:12930363 GeneID:945505
KEGG:ecj:Y75_p0864 KEGG:eco:b0892 PATRIC:32116995 EchoBASE:EB2553
EcoGene:EG12690 OMA:TTYYLND BioCyc:EcoCyc:EG12690-MONOMER
BioCyc:ECOL316407:JW0875-MONOMER Genevestigator:P0AAZ4
Uniprot:P0AAZ4
Length = 447
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 50/207 (24%), Positives = 92/207 (44%)
Query: 3 KYRPQTFSDIVGNEDTVERLKVFS---SSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP+ + +G + + K +G++ ++I+ GPPG GKTT +AR
Sbjct: 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR------ 72
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ +A +E ++ G+ +R I+ Q + GR I+ +DE Q A
Sbjct: 73 YANADVERISAVTSGVKEIREAIERARQNRNA---GRRTILFVDEVHRFNKSQQDAFLPH 129
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDA---QLLSKVIEICEK----EN 172
+E + T A N S ++ + SR + L+ Q+L++ +E + ++
Sbjct: 130 IEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQD 189
Query: 173 ISHTNDGLEAIVFTAQGDMRQALNNLQ 199
I ++ AI GD R+ALN L+
Sbjct: 190 IVLPDETRRAIAELVNGDARRALNTLE 216
>TIGR_CMR|SPO_0515 [details] [associations]
symbol:SPO_0515 "ATPase, AAA family" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006281
GO:GO:0006310 GO:GO:0009378 HOGENOM:HOG000017623 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
RefSeq:YP_165777.1 ProteinModelPortal:Q5LW28 GeneID:3194720
KEGG:sil:SPO0515 PATRIC:23374293 Uniprot:Q5LW28
Length = 438
Score = 117 (46.2 bits), Expect = 0.00036, P = 0.00036
Identities = 51/204 (25%), Positives = 96/204 (47%)
Query: 2 EKYRPQTFSDIVGNEDTV--ER-LKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGP 58
++ RPQ+ +++G + + E L V +SG++ +++ GPPGVGKTT +AR+L
Sbjct: 23 DRLRPQSLGEVIGQQQVLGPEAPLGVMLASGSLSSLVFWGPPGVGKTT----IARLLAQE 78
Query: 59 SFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 118
+ V +++A G+ ++ K+F ++ G+ ++ +DE Q
Sbjct: 79 TDLHFV-QISAIFT-GVPDLK---KVFEAARIRRGNGQGTLLFVDEIHRFNKAQQDGFLP 133
Query: 119 TMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE---NISH 175
ME + A N S ++ + SR +L +L+ A+ L + E+E +
Sbjct: 134 HMEDGTILLVGATTENPSFELNAALLSRAQVLVLERLS-AEDLEHLTARAERELDRELPL 192
Query: 176 TNDGLEAIVFTAQGDMRQALNNLQ 199
T + A+ A GD R LN ++
Sbjct: 193 TPEARLALQEMADGDGRALLNLIE 216
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 121 (47.7 bits), Expect = 0.00058, P = 0.00058
Identities = 45/182 (24%), Positives = 85/182 (46%)
Query: 34 IIISGPPGVGKTTTILCLAR------ILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA- 86
+++SGPPG+GKT+ L + + I L S + E+ G+ +N K F
Sbjct: 894 VLLSGPPGIGKTSAALLICKQKGFEAIELNASDARSKSEIKRLLS-GVSDNQNITKFFGT 952
Query: 87 --QQKVTLPPGRHKI---VILDEADSMTDGAQQA-LRRTMEIYSNTTR-FALACNN--SE 137
Q KI +ILDE D + + + + + + + F CN+ S
Sbjct: 953 TNQDTGKDVQANKKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSS 1012
Query: 138 KIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNN 197
K+ +++ C L+ K T Q+ S+++ I + E + ++ +E + ++ D+RQ++N
Sbjct: 1013 KVTS-LRNHCMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINT 1071
Query: 198 LQ 199
LQ
Sbjct: 1072 LQ 1073
>TIGR_CMR|SO_2308 [details] [associations]
symbol:SO_2308 "ATPase, AAA family" species:211586
"Shewanella oneidensis MR-1" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 RefSeq:NP_717903.2
ProteinModelPortal:Q8EER1 GeneID:1170033 KEGG:son:SO_2308
PATRIC:23524239 Uniprot:Q8EER1
Length = 443
Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
Identities = 47/209 (22%), Positives = 93/209 (44%)
Query: 3 KYRPQTFSDIVGNEDTV---ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP+T ++ +G + + L+ +G ++++ GPPG GKTT LA ++
Sbjct: 18 RMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTT----LAELIA--H 71
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ +A +E ++ G+ +R I+ Q + G+ ++ +DE Q A
Sbjct: 72 YSNAHVERISAVTSGVKDIRGAIEQ--AQAIAQSRGQRTLLFVDEVHRFNKSQQDAFLPF 129
Query: 120 MEIYSNTTRF--ALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIE-ICEKEN---- 172
+E T F A N S +I + SR + +L+ +++ + + + + E
Sbjct: 130 IE--DGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALADTERGLGQ 187
Query: 173 --ISHTNDGLEAIVFTAQGDMRQALNNLQ 199
++ D L + GD R+ALN L+
Sbjct: 188 RALNMPTDVLNKLAQLCDGDARKALNLLE 216
>TIGR_CMR|DET_1309 [details] [associations]
symbol:DET_1309 "ATPase, AAA family" species:243164
"Dehalococcoides ethenogenes 195" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 GO:GO:0006310 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009378 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_182021.1
ProteinModelPortal:Q3Z6X8 STRING:Q3Z6X8 GeneID:3229452
KEGG:det:DET1309 PATRIC:21609649
BioCyc:DETH243164:GJNF-1310-MONOMER Uniprot:Q3Z6X8
Length = 457
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 53/206 (25%), Positives = 90/206 (43%)
Query: 3 KYRPQTFSDIVGNEDTV---ERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP+ S+ VG + + L++ +P++I GPPG GKTT +AR L
Sbjct: 26 RMRPEGLSEFVGQDHLIGEGRALRLAIEGDKIPSLIFWGPPGSGKTTLANIIARRL---- 81
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
DA ++ G+ +R ++ A++++ R I+ +DE Q A+
Sbjct: 82 --DAHFSALSAVSAGVADLRRVVEE-ARERLKFER-RRTILFIDEIHRFNKSQQDAILPY 137
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQL---LSKVIEICEKENISHT 176
+E + A N S ++ + SR + N L++ ++ L + +E H
Sbjct: 138 VEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNPLSEKEISLILKRSLEDPSGLGNYHA 197
Query: 177 NDGLEA---IVFTAQGDMRQALNNLQ 199
EA I AQGD R ALN L+
Sbjct: 198 RLLEEAEKHISSFAQGDARIALNILE 223
>UNIPROTKB|P39918 [details] [associations]
symbol:rarA "Replication-associated recombination protein
A" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 EMBL:X75627
PIR:S43134 RefSeq:NP_820184.4 ProteinModelPortal:P39918 SMR:P39918
GeneID:1209093 KEGG:cbu:CBU_1189 PATRIC:17931123 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
BioCyc:CBUR227377:GJ7S-1178-MONOMER InterPro:IPR021886 Pfam:PF12002
Uniprot:P39918
Length = 440
Score = 114 (45.2 bits), Expect = 0.00079, P = 0.00079
Identities = 56/207 (27%), Positives = 90/207 (43%)
Query: 3 KYRPQTFSDIVGNEDTVERLK-VFSS--SGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP + VG + + K +F + G + ++I+ GPPG GKTT LA I+ +
Sbjct: 13 RMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTT----LAEIIAQKA 68
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
A +E ++ G+ +R+ ++ + K G+ I+ +DE Q A
Sbjct: 69 --GARVESISAVLAGVKDIRDVVERAERHK-----GQATILFVDEVHGFNKSQQDAFLPH 121
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E + T A N S ++ + SR + +LT+A LLS + E
Sbjct: 122 VEKGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERGLGKKA 181
Query: 180 LEA-------IVFTAQGDMRQALNNLQ 199
LE IV A GD RQ LN L+
Sbjct: 182 LEIPEPLRRRIVQFADGDARQCLNLLE 208
>TIGR_CMR|CBU_1189 [details] [associations]
symbol:CBU_1189 "ATPase, AAA family domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0017111 EMBL:X75627 PIR:S43134 RefSeq:NP_820184.4
ProteinModelPortal:P39918 SMR:P39918 GeneID:1209093
KEGG:cbu:CBU_1189 PATRIC:17931123 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
BioCyc:CBUR227377:GJ7S-1178-MONOMER InterPro:IPR021886 Pfam:PF12002
Uniprot:P39918
Length = 440
Score = 114 (45.2 bits), Expect = 0.00079, P = 0.00079
Identities = 56/207 (27%), Positives = 90/207 (43%)
Query: 3 KYRPQTFSDIVGNEDTVERLK-VFSS--SGNVPNIIISGPPGVGKTTTILCLARILLGPS 59
+ RP + VG + + K +F + G + ++I+ GPPG GKTT LA I+ +
Sbjct: 13 RMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTT----LAEIIAQKA 68
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
A +E ++ G+ +R+ ++ + K G+ I+ +DE Q A
Sbjct: 69 --GARVESISAVLAGVKDIRDVVERAERHK-----GQATILFVDEVHGFNKSQQDAFLPH 121
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDG 179
+E + T A N S ++ + SR + +LT+A LLS + E
Sbjct: 122 VEKGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERGLGKKA 181
Query: 180 LEA-------IVFTAQGDMRQALNNLQ 199
LE IV A GD RQ LN L+
Sbjct: 182 LEIPEPLRRRIVQFADGDARQCLNLLE 208
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 317 306 0.00099 115 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 162
No. of states in DFA: 576 (61 KB)
Total size of DFA: 193 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.15u 0.11s 27.26t Elapsed: 00:00:01
Total cpu time: 27.18u 0.12s 27.30t Elapsed: 00:00:01
Start: Thu Aug 15 14:43:47 2013 End: Thu Aug 15 14:43:48 2013
WARNINGS ISSUED: 1