RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy879
(317 letters)
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 170 bits (432), Expect = 9e-53
Identities = 145/218 (66%), Positives = 185/218 (84%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ SDIVGN++T++RL+ + GN+P++IISG PG+GKTT++ CLA LLG S+
Sbjct: 6 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 65
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
D VLELNAS+DRGID VRN+IK FAQ+K+ LPPG+HKIVILDEADSMT GAQQALRRTM
Sbjct: 66 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTM 125
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E+YSN+TRFA ACN S KIIEP+QS+CA+LRY+KL+D +L ++++I + E++ +TNDGL
Sbjct: 126 ELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL 185
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCD 218
EAI+FTA+GDMRQA+NNLQST G G V A+ VFK+ D
Sbjct: 186 EAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVD 223
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 169 bits (428), Expect = 4e-52
Identities = 108/216 (50%), Positives = 150/216 (69%), Gaps = 1/216 (0%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRPQ DIVG E V+RLK + +G++P+++ +GPPGVGKTT L LAR L G ++
Sbjct: 15 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW 74
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ LELNAS++RGI+ +R K+K FA+ K + KI+ LDEAD++T AQQALRRTM
Sbjct: 75 RHNFLELNASDERGINVIREKVKEFARTK-PIGGASFKIIFLDEADALTQDAQQALRRTM 133
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E++S+ RF L+CN S KIIEPIQSRCA+ R+ L D + ++ I E E + T +GL
Sbjct: 134 EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 193
Query: 181 EAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKV 216
+AI++ A+GDMR+A+N LQ+ +T E VF V
Sbjct: 194 QAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 229
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 168 bits (427), Expect = 1e-51
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 24/236 (10%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLARILLGPSF 60
K+RPQTF+D+VG E + L S G + + + SG GVGKT+ LA+ L +
Sbjct: 4 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 63
Query: 61 KDA-------------------VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVI 101
A ++E++A++ ++ R+ + GR K+ +
Sbjct: 64 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---GRFKVYL 120
Query: 102 LDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLL 161
+DE ++ + AL +T+E +F LA + +K+ I SRC L Q+
Sbjct: 121 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 180
Query: 162 SKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNL-QSTHNGFGHVTAEYVFKV 216
++ I +E+I+H L+ + A+G +R AL+ Q+ +G G V+ + V +
Sbjct: 181 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 236
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 140 bits (352), Expect = 9e-41
Identities = 94/232 (40%), Positives = 135/232 (58%), Gaps = 16/232 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPS- 59
+EKYRP+ ++ + V LK S N+P+++ GPPG GKT+TIL L + L GP
Sbjct: 3 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL 62
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKV---------TLPPGRHKIVILDEADSMTD 110
K +LELNAS++RGI VR K+K FA+ V P +KI+ILDEADSMT
Sbjct: 63 MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA 122
Query: 111 GAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEK 170
AQ ALRRTME YS TRF L CN +II+P+ S+C+ R+ L + + ++ I E+
Sbjct: 123 DAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ 182
Query: 171 ENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGF------GHVTAEYVFKV 216
EN+ + LE I+ + GD+R+ + LQS G ++T+ V ++
Sbjct: 183 ENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEEL 234
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 137 bits (346), Expect = 6e-40
Identities = 81/222 (36%), Positives = 132/222 (59%), Gaps = 6/222 (2%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
+EKYRP+T ++ G + + ++ F G +P+++ GPPG GKT+TI+ LAR + G ++
Sbjct: 5 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 64
Query: 61 KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 120
+ VLELNAS+DRGID VRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +
Sbjct: 65 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRVI 123
Query: 121 EIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL 180
E Y+ TRF + N + K+ + S+C R+ L + ++ + E + + +
Sbjct: 124 ERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 183
Query: 181 EAIVFTAQGDMRQALNNLQSTH-----NGFGHVTAEYVFKVC 217
+A++ + GDMR+ LN LQS ++ + +++ C
Sbjct: 184 KALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 225
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 115 bits (287), Expect = 4e-31
Identities = 47/241 (19%), Positives = 96/241 (39%), Gaps = 25/241 (10%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVF-----------------SSSGNVPNIIISGPPGVG 43
KY P + GN+ +V +LK + SG ++ GPPG+G
Sbjct: 5 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIG 64
Query: 44 KTTTILCLARILLGPSFKDAVL------ELNASNDRGIDTVRNKIKMFAQQKVTLPPGRH 97
KTT +A+ L + LNA +D + ++ G+H
Sbjct: 65 KTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKH 124
Query: 98 KIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKII--EPIQSRCAMLRYNKL 155
++I+DE D M+ G + + + + T+ + N + P C +++ +
Sbjct: 125 FVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRP 184
Query: 156 TDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFK 215
+ S+++ I +E + ++ ++ T +GD+RQ +N L + + E + +
Sbjct: 185 DANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINE 244
Query: 216 V 216
+
Sbjct: 245 I 245
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 106 bits (265), Expect = 7e-28
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 35/237 (14%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNV-PNIIISGPPGVGKTTTILCLARILLGPS 59
++KYRP++ + + NE+ LK S P++++ GP G GK T + L + GP
Sbjct: 2 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 61
Query: 60 ----------------------------FKDAVLELNASNDRGIDTVRNKIKMFAQQ--- 88
+ +NDR + K +Q
Sbjct: 62 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 121
Query: 89 --KVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSR 146
R+K VI++EA+S+T AQ ALRRTME YS R + C++ II PI+S+
Sbjct: 122 QDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ 181
Query: 147 CAMLRYNKLTDAQLLSKVIEICEKENISH-TNDGLEAIVFTAQGDMRQALNNLQSTH 202
C ++R +D+++ + + ++ E I T D L+ I + G++R +L L+S
Sbjct: 182 CLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 238
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 104 bits (260), Expect = 2e-27
Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 11/192 (5%)
Query: 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDA-VLELNA-SNDRG 74
D +E LK +I+I+G L L + K + VLE++ + G
Sbjct: 1 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIG 60
Query: 75 IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 134
ID +R F L K VI+ + + MT A A + +E L
Sbjct: 61 IDDIRTIKD-FLNYSPEL--YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 117
Query: 135 NSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL----EAIVFTAQ-- 188
++ I+SR + N + + L K E + EA A+
Sbjct: 118 RWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKL 177
Query: 189 GDMRQALNNLQS 200
+ ++L L++
Sbjct: 178 SGLMESLKVLET 189
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 93.4 bits (232), Expect = 1e-24
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 5/95 (5%)
Query: 220 PHPLAVKEMLLNCVEGNMKDSYKIIH-HLYKLGYAPEDIIGNIFRVAKTL-DIPEPLKLS 277
PHPL VK+MLL N++DS +I+ L+K GY+ DI+ FRV K L + E ++L
Sbjct: 1 PHPLIVKKMLLAS---NLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLE 57
Query: 278 IIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
+I+EIG H+RI EGV + LQL+ +LA++ + +K
Sbjct: 58 MIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNK 92
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 95.8 bits (237), Expect = 7e-24
Identities = 40/243 (16%), Positives = 81/243 (33%), Gaps = 42/243 (17%)
Query: 5 RPQTFSDIVGNEDTVERLKVFSSSG-----NVPNIIISGPPGVGKTTTILCLARILLGPS 59
RP+T + +G E ++L+V+ + + ++++ GPPG+GKTT
Sbjct: 4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV--------I 55
Query: 60 FKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+ + L ++ I+ + + A I+ +DE ++ A++ L
Sbjct: 56 AHELGVNLRVTSGPAIEKPGDLAAILANS-----LEEGDILFIDEIHRLSRQAEEHLYPA 110
Query: 120 MEIY----------------SNTTRFALACNNSEKIIEPIQSR---CAMLRYNKLTDAQL 160
ME + RF L + + + T +L
Sbjct: 111 MEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL 170
Query: 161 LSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ-----STHNGFGHVTAEYVFK 215
V+ + T + I ++G MR A + + G +T E +
Sbjct: 171 AQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALE 230
Query: 216 VCD 218
Sbjct: 231 ALA 233
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 95
Score = 89.1 bits (221), Expect = 5e-23
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 221 HPLAVKEMLLNCVEGNMKDSYKIIH-HLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSII 279
P ++EM+L ++GN + + + L K G + ED++ + + L I EP K+ +
Sbjct: 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLA 62
Query: 280 QEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK 312
+IG + R+ EG N ++QL LLA+ ++G K
Sbjct: 63 DKIGEYNFRLVEGANEIIQLEALLAQFTLIGKK 95
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 88.1 bits (217), Expect = 4e-21
Identities = 37/235 (15%), Positives = 83/235 (35%), Gaps = 25/235 (10%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVF-----SSSGNVPNIIISGPPGVGKTTTILCLARILL 56
+ RP++ + +G E+ ++L + + +++++GPPG+GKTT +A L
Sbjct: 1 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 60
Query: 57 GPSF---------KDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADS 107
+ + + S +RG ++I + L + +D
Sbjct: 61 TNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIG 120
Query: 108 MTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSK-VIE 166
A +++ I A S + P++SR ++ + L + +
Sbjct: 121 KGPSA-----KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKR 175
Query: 167 ICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ-----STHNGFGHVTAEYVFKV 216
++ + E I ++G R A+ + T + + V K
Sbjct: 176 AASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKT 230
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 91
Score = 79.8 bits (197), Expect = 1e-19
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 225 VKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVA-KTLDIPEPLKLSIIQEIG 283
+ E++ G+ + K ++ K G++ ++ + + K I +
Sbjct: 6 LIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLF 65
Query: 284 NVHLRISEGVNSLLQLSGLLARLC 307
R++ G N +QL LL ++
Sbjct: 66 TTDSRLNNGTNEHIQLLNLLVKIS 89
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 95
Score = 79.4 bits (196), Expect = 2e-19
Identities = 16/90 (17%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 220 PHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL-GYAPEDIIGNIFRVAKTLDIPEP-LKLS 277
P P +K +L + +E + ++ ++ + G A D+I I ++ + ++ ++
Sbjct: 1 PRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVH 60
Query: 278 IIQEIGNVHLRISEGVNSLLQLSGLLARLC 307
++ ++ ++ IS+G N +Q S ++ +
Sbjct: 61 LLTKLADIEYSISKGGNDQIQGSAVIGAIK 90
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 79.8 bits (195), Expect = 2e-18
Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 25/204 (12%)
Query: 16 EDTVERLKVFSSSGNVPN-IIISGPPGVGKTTTILCLAR-------------------IL 55
E+L +G + ++I PG+G I L+R L
Sbjct: 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQL 67
Query: 56 LGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 115
+ L + V ++ + G K+V + +A +TD A A
Sbjct: 68 MQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANA 127
Query: 116 LRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISH 175
L +T+E T F LA E+++ ++SRC + + ++ + ++
Sbjct: 128 LLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVTM 182
Query: 176 TNDGLEAIVFTAQGDMRQALNNLQ 199
+ D L A + + G AL Q
Sbjct: 183 SQDALLAALRLSAGSPGAALALFQ 206
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 73.2 bits (179), Expect = 3e-15
Identities = 25/182 (13%), Positives = 46/182 (25%), Gaps = 19/182 (10%)
Query: 32 PNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF------ 85
+ GP GKTT L + G L +N DR + I F
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGK-----ALNVNLPLDRLNFELGVAIDQFLVVFED 209
Query: 86 AQQKVTLPPGRHKIVILDEADSMTD------GAQQALRRTMEIYSNTTRFALACNNS-EK 138
+ ++ D++ D + + + N
Sbjct: 210 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVP 269
Query: 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGL-EAIVFTAQGDMRQALNN 197
+ + K L + + EK I L I + + Q++ +
Sbjct: 270 KTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQS 329
Query: 198 LQ 199
Sbjct: 330 RI 331
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 54.9 bits (131), Expect = 3e-09
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 6/148 (4%)
Query: 5 RPQ-TFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDA 63
RP FS IVG ED L + + + +++ G G GK+T + LA +L +
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEG 60
Query: 64 VLELNASNDRGI----DTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 119
+++ N I + + V LP G + ++ D ++
Sbjct: 61 -CPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFE 119
Query: 120 MEIYSNTTRFALACNNSEKIIEPIQSRC 147
+ + R L + + + I
Sbjct: 120 PGLLARANRGYLYIDECNLLEDHIVDLL 147
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 52.5 bits (124), Expect = 2e-08
Identities = 35/279 (12%), Positives = 66/279 (23%), Gaps = 64/279 (22%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVF---------SSSGNVPNIIISGPPGVGKTTTILCLA 52
E Y P E L S G G+GKTT
Sbjct: 11 ENYIPPEL---RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTV 67
Query: 53 RILLGPSFKDAV---------------------------LELNASNDRGIDTVRNKIKMF 85
+ + + K+ + + +D ++ +
Sbjct: 68 KRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL 127
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSN------------TTRFALAC 133
+ L + + + + L R E + +
Sbjct: 128 YVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALS 187
Query: 134 NNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE--NISHTNDGLEAIV------F 185
EKI + L +L + + + E + LE I
Sbjct: 188 YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 247
Query: 186 TAQGDMRQALNNLQ-----STHNGFGHVTAEYVFKVCDE 219
G R+A+ L+ + G ++ + V K E
Sbjct: 248 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 52.5 bits (124), Expect = 2e-08
Identities = 37/265 (13%), Positives = 74/265 (27%), Gaps = 50/265 (18%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVF------SSSGNVPNIIISGPPGVGKTTTILCLARIL 55
Y P+ E +++L + + + P + G PG GKT T+ L +
Sbjct: 11 PSYVPKRL---PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 67
Query: 56 LGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQ----------------KVTLPPGRHKI 99
+ V + + + +
Sbjct: 68 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 127
Query: 100 VILDEADSMTDGAQQALRRTMEIYSNTTRFALACN---NSEKIIEPIQSRCA-------- 148
++LD+A ++ R + F +A +++ ++ +
Sbjct: 128 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187
Query: 149 MLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV---------FTAQGDMRQALNNLQ 199
+ S++ D L+ I T +GD R A++ L
Sbjct: 188 RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 247
Query: 200 -----STHNGFGHVTAEYVFKVCDE 219
+ NG H+ E V K E
Sbjct: 248 RSAYAAQQNGRKHIAPEDVRKSSKE 272
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 42.1 bits (99), Expect = 4e-05
Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 38/171 (22%)
Query: 8 TFSDIVGNEDTVERLK----------VFSSSGNVP--NIIISGPPGVGKTTTILCLARIL 55
TF+D+ G ++ E + F G +++ GPPG GKT +A
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 56 LGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM------- 108
P F + + G MF Q K P I+ +DE D++
Sbjct: 70 KVPFFTISGSDF-VEMFVG-VGASRVRDMFEQAKKAAP----CIIFIDEIDAVGRQRGAG 123
Query: 109 TDGAQQALRRTM--------EIYSNTTRFALACNNSEKIIEPIQSRCAMLR 151
G +T+ N +A N +++P A+LR
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP-----ALLR 169
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 41.4 bits (97), Expect = 6e-05
Identities = 39/171 (22%), Positives = 58/171 (33%), Gaps = 38/171 (22%)
Query: 8 TFSDIVGNEDTVERLK----------VFSSSGNVP--NIIISGPPGVGKTTTILCLARIL 55
TF D+ G E+ E LK F G +++ GPPGVGKT +A
Sbjct: 7 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 66
Query: 56 LGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM------- 108
P + + G +F K P IV +DE D++
Sbjct: 67 RVPFITASGSDF-VEMFVG-VGAARVRDLFETAKRHAPC----IVFIDEIDAVGRKRGSG 120
Query: 109 TDGAQQALRRTM--------EIYSNTTRFALACNNSEKIIEPIQSRCAMLR 151
G +T+ +T +A N I++P A+LR
Sbjct: 121 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP-----ALLR 166
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 40.9 bits (95), Expect = 6e-05
Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 7/168 (4%)
Query: 28 SGNVPNII-ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA 86
P +I + G G GKTT+ LA++ + + + I+ ++ +
Sbjct: 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG 66
Query: 87 QQKVTLPPG--RHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQ 144
++ G + A ++ + T K+ ++
Sbjct: 67 ATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNL---MEELRKVHRVVK 123
Query: 145 SRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMR 192
+ + L + + I + I+ T
Sbjct: 124 KKIPDAPHETLLVIDATTG-QNGLVQAKIFKEAVNVTGIILTKLDGTA 170
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 40.9 bits (94), Expect = 9e-05
Identities = 31/248 (12%), Positives = 59/248 (23%), Gaps = 28/248 (11%)
Query: 11 DIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNAS 70
D E +E+LK P ++ G GK++ I L P + +
Sbjct: 13 DFFDREKEIEKLK----GLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 68
Query: 71 NDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFA 130
N +++ + V P K + + + + + S
Sbjct: 69 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLE 128
Query: 131 LACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGD 190
S+ + + L KL LL + + + + G
Sbjct: 129 SFEQASKDNVIIVLDEAQELV--KLRGVNLLPALAYA-----YDNLKRIKFIMSGSEMGL 181
Query: 191 MRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKL 250
+ L FG + K E L +
Sbjct: 182 LYDYLRVEDPESPLFGRAFSTVELKPFSREE---AIEFLR--------------RGFQEA 224
Query: 251 GYAPEDII 258
+D
Sbjct: 225 DIDFKDYE 232
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 40.0 bits (93), Expect = 1e-04
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 28 SGNVPNII-ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFA 86
G P +I + G GVGKTTTI LAR + + ++ ++ +
Sbjct: 5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 64
Query: 87 QQKVTLPPGRHKIVILDEA 105
+ G ++ +A
Sbjct: 65 IPVIAQHTGADSASVIFDA 83
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVL 65
++ ++GPPGVGKTT I + +L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 39.8 bits (92), Expect = 2e-04
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 27/166 (16%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ-QKVT 91
NI++ GP GVGKT LA++ P K + G + +
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI 110
Query: 92 LPPGRHKIVILDE------------ADSMTDGAQQALRRTMEIYSNTTRF---------- 129
++ IV +DE AD +G Q+ L +E + +T+
Sbjct: 111 DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 170
Query: 130 ----ALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKE 171
A +I +Q R + A +++
Sbjct: 171 IASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHAS 216
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 39.8 bits (92), Expect = 3e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 23 KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELN 68
+ GN + ++G PG GK+T + +L+ K AV+ ++
Sbjct: 46 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 38.2 bits (88), Expect = 5e-04
Identities = 30/149 (20%), Positives = 47/149 (31%), Gaps = 14/149 (9%)
Query: 32 PNII-ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKV 90
++ + G GVGKTTTI L R K + G + K + +
Sbjct: 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI 65
Query: 91 TLPPGRHKIVILDEADSM------------TDGAQQALRRTMEIYSNTTRFALACNNSEK 138
P G + +A T G ME R A+A + E+
Sbjct: 66 QGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKR-AIAKADPEE 124
Query: 139 IIEPIQSRCAMLRYNKLTDAQLLSKVIEI 167
E A+ N L A+ + + +
Sbjct: 125 PKEVWLVLDAVTGQNGLEQAKKFHEAVGL 153
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 38.7 bits (89), Expect = 6e-04
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 23 KVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKI 82
V +G + I+G PGVGK+TTI L +L K AVL ++ S+ R ++
Sbjct: 43 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 102
Query: 83 KMFAQ 87
A+
Sbjct: 103 TRMAR 107
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 38.0 bits (87), Expect = 9e-04
Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 9/163 (5%)
Query: 8 TFSDIVGNE---DTVERLKVFSSSGNVP-NIIISGPPGVGKTTTILCLARILLGPSFKDA 63
F+D D +E L + P ++ G PG GKT+ + G
Sbjct: 5 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 64
Query: 64 VLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIY 123
+ + V+ K + + +I +D + + RT ++
Sbjct: 65 NDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVP 124
Query: 124 SNTTRFALACNNSEKIIEP-----IQSRCAMLRYNKLTDAQLL 161
T A K+ + RY + +
Sbjct: 125 IQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPM 167
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 37.4 bits (86), Expect = 0.001
Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 32 PNII-ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTV-----RNKIKMF 85
N+ + G G GKTTT LA G + ++ + + + + + +
Sbjct: 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL 69
Query: 86 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQS 145
P + V D ++I E +
Sbjct: 70 EVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLV 129
Query: 146 RCAMLRYNKLTDAQLLSKVIEI 167
AM L+ A+ + + +
Sbjct: 130 LDAMTGQEALSVARAFDEKVGV 151
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 36.5 bits (83), Expect = 0.002
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 31 VPNIIISGPPGVGKTTTILCLARIL 55
+PNI+++G PGVGKTT LA
Sbjct: 4 LPNILLTGTPGVGKTTLGKELASKS 28
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 36.5 bits (83), Expect = 0.002
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKD 62
NI+I+G PG GKT+ +A L G +
Sbjct: 7 NILITGTPGTGKTSMAEMIAAELDGFQHLE 36
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 36.7 bits (84), Expect = 0.002
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 28 SGNVPNII-ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF 85
+P +I + G G GK TT LA FK ++ + ++ ++ +
Sbjct: 8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQI 66
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 36.1 bits (82), Expect = 0.002
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
III+G PGVGKTT + + L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERL 24
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 36.1 bits (82), Expect = 0.002
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 4/161 (2%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
I++G PGVGK+T + + IL +N + ++ + L
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGIN--NKIINYGDFMLATALKLGYAKDRDEMRKLS 61
Query: 94 PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYN 153
+ K + +D A + + A+ ++ +T + +
Sbjct: 62 VEKQKKLQIDAAKGIAEEARAGGEGY--LFIDTHAVIRTPSGYLPGLPSYVITEINPSVI 119
Query: 154 KLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQA 194
L +A + + + E+++ R A
Sbjct: 120 FLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYA 160
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 36.2 bits (82), Expect = 0.003
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQ 87
+ I G GK+ + LA + S + E G +
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQM 63
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 35.2 bits (80), Expect = 0.004
Identities = 5/43 (11%), Positives = 13/43 (30%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76
+ G GKTT + + ++ ++ +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPAR 46
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 35.0 bits (79), Expect = 0.005
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 32 PNIIISGPPGVGKTTTILCLARIL 55
P ++ G PG GK+T LA+ L
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKAL 25
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 35.0 bits (79), Expect = 0.005
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 31 VPNIIISGPPGVGKTTTILCLARIL 55
+P + + G GKTT + L L
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPAL 26
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 35.4 bits (81), Expect = 0.007
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 12 IVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLA-RILLG---PSFKD---AV 64
++G ++ + R+ N ++ G PGVGKT + LA RI+ G K
Sbjct: 24 VIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 83
Query: 65 LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 108
L++ + + ++ A + + I+ +DE ++
Sbjct: 84 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTV 127
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 35.2 bits (80), Expect = 0.007
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRG 74
+ VE + + NI++ GP G GKT LA+ L + +A++
Sbjct: 52 QDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL-----DIPIAISDATSLTE 106
Query: 75 IDTVRNKIKMFAQQKVTLPPG-----RHKIVILDEADSMTDGAQQ 114
V ++ + + + IV +DE D ++ ++
Sbjct: 107 AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSEN 151
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 34.6 bits (78), Expect = 0.007
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGID 76
II+GP GVGK+TT LA L ++ + + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRP 47
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 34.2 bits (77), Expect = 0.010
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
++++G PGVG TT+ L
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNL 25
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 34.2 bits (77), Expect = 0.010
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
II++G GK+ + CL +L P V L + + + I+ A V++
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 94 PGRHKI 99
P +
Sbjct: 66 PEFRAL 71
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 34.2 bits (78), Expect = 0.012
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 12 IVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLAR 53
++G E +ER N ++ G GVGKT LA
Sbjct: 20 LIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 61
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 34.4 bits (79), Expect = 0.013
Identities = 11/86 (12%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
+ + G G GK+T + R +++ + + + ++RN++ + +Q
Sbjct: 44 VALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 102
Query: 94 PGRHKIVILDEADSMTD-GAQQALRR 118
+ + + ++A R
Sbjct: 103 DTVANNIAYARTEEYSREQIEEAARM 128
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 33.4 bits (75), Expect = 0.018
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
+++SG PG GK+T LA +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLP 28
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 33.3 bits (75), Expect = 0.025
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 5/145 (3%)
Query: 31 VPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKV 90
+ +++G G GKTT L IL + N + +D I A Q
Sbjct: 3 IAVTLLTGFLGAGKTTL---LRHILNEQHGYKIAVIENEFGEVSVD--DQLIGDRATQIK 57
Query: 91 TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAML 150
TL G +E + L + + + II+ S +
Sbjct: 58 TLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLC 117
Query: 151 RYNKLTDAQLLSKVIEICEKENISH 175
+ L L + E+ N
Sbjct: 118 QRYLLDGVIALVDAVHADEQMNQFT 142
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 33.2 bits (75), Expect = 0.032
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 25 FSSSGNVPNII-ISGPPGVGKTTTILCLARILL 56
F + P I SGP G GK+ T + + L+
Sbjct: 20 FETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 52
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 32.4 bits (72), Expect = 0.035
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 33 NIIISGPPGVGKTTTILCLARIL 55
NI + GP G GK+T LA+ L
Sbjct: 4 NIFLVGPMGAGKSTIGRQLAQQL 26
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 33.0 bits (74), Expect = 0.035
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 30 NVPNIII-SGPPGVGKTTTILCLARIL 55
N+P + +G GVGKT+ A L
Sbjct: 6 NIPPYLFFTGKGGVGKTSISCATAIRL 32
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 33.2 bits (75), Expect = 0.036
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKD 62
NI++ GP GVGKT LA++ P K
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKV 80
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 33.0 bits (74), Expect = 0.038
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I++ G GVGKTT +A L
Sbjct: 23 IMLMGKGGVGKTTMAAAIAVRL 44
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 32.5 bits (73), Expect = 0.039
Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 10/163 (6%)
Query: 27 SSGNVPNIIISGPPGVGKTT------TILCLARILLGPSFKDAVLELNASNDRGIDTVRN 80
+S + I G PG GK T L + G +D +L +
Sbjct: 2 ASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQ 61
Query: 81 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTT-RFALACNNSEKI 139
V H++ L + + + DG + L + + + N ++
Sbjct: 62 --GKLIPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEV 119
Query: 140 IEP-IQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLE 181
I+ + R + V+E K+ + T G E
Sbjct: 120 IKQRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTE 162
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 32.7 bits (73), Expect = 0.040
Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 31/172 (18%)
Query: 8 TFSDIVGNEDTVERLK-----------VFSSSGNVP--NIIISGPPGVGKTTTILCLARI 54
+ D+ G + ++K +F + G P I++ GPPG GKT +A
Sbjct: 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 61
Query: 55 LLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDE----ADSMTD 110
F E+ + ++ K A++ I+ +DE A
Sbjct: 62 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN------APAIIFIDELDAIAPKREK 115
Query: 111 GAQQALRRTMEIYSNTTR--------FALACNNSEKIIEPIQSRCAMLRYNK 154
+ RR + +A N I+P R
Sbjct: 116 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 167
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 32.2 bits (72), Expect = 0.041
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQK 89
I + G G G TT LAR LG F D + + ++ + V ++
Sbjct: 4 PIFMVGARGCGMTTVGRELARA-LGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRR 59
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 32.3 bits (72), Expect = 0.046
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 27 SSGNVPNIIISGPPGVGKTT 46
S V I + G PG GK T
Sbjct: 4 SPDQVSVIFVLGGPGAGKGT 23
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 32.4 bits (72), Expect = 0.046
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 35 IISGPPGVGKTTTILCLARIL 55
+ SG G GKTT L L
Sbjct: 6 VASGKGGTGKTTITANLGVAL 26
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 32.4 bits (72), Expect = 0.051
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 7 QTFSDIVGNEDTVERLKVFSS------SGNVPN---IIISGPPGVGKTTTILCLARILLG 57
++ D++ TV +L SS G + + +G G GKT + L
Sbjct: 1 KSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQN 60
Query: 58 PSFKDAVLELNASNDRGIDTVR 79
P F E + +
Sbjct: 61 PEFLFYDEEAVSKGEVAQPKAV 82
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 32.4 bits (72), Expect = 0.055
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 35 IISGPPGVGKTTTILCLARIL 55
I+SG G GKTT L+ L
Sbjct: 7 IVSGKGGTGKTTVTANLSVAL 27
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 31.8 bits (71), Expect = 0.056
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 34 IIISGPPGVGKTT 46
+++SGP G GK+T
Sbjct: 3 VVLSGPSGAGKST 15
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 31.8 bits (71), Expect = 0.057
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 33 NIIISGPPGVGKTTTILCLARIL 55
NI+ G G GK+T LA+ L
Sbjct: 2 NIVFIGFMGSGKSTLARALAKDL 24
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 32.2 bits (73), Expect = 0.060
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
++ GP G GK+T + +A L + D L + + M Q L
Sbjct: 29 VVFVGPSGCGKSTLLRMIAG-LETITSGD--LFIGEKRMNDTPPAERGVGMVFQSY-ALY 84
Query: 94 PGRHKIVILDEADSMTDGAQQALRRTME 121
P + + ++ + + +
Sbjct: 85 PHLSVAENMSFGLKLAGAKKEVINQRVN 112
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 31.8 bits (71), Expect = 0.076
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
+ I G G+GK+TT L L
Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGL 25
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 31.4 bits (70), Expect = 0.078
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 34 IIISGPPGVGKTT 46
I+ISGP G GK+T
Sbjct: 4 IVISGPSGTGKST 16
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.9 bits (71), Expect = 0.078
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 34 IIISGPPGVGKTTTILCLA 52
+ P G GK+ L LA
Sbjct: 32 GALVSPGGAGKSMLALQLA 50
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 31.8 bits (72), Expect = 0.083
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
I +GP G GK+T L R P+ + ++ ++ ++ R++I +Q +
Sbjct: 31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89
Query: 94 -PGRHKIVILDEADSMTDGAQQALRR 118
R + E D + Q L
Sbjct: 90 GTIRENLTYGLEGDYTDEDLWQVLDL 115
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 31.2 bits (69), Expect = 0.083
Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 13/124 (10%)
Query: 34 IIISGPPGVGKTTTILCLARILLG-----------PSFKDAVLELNASNDRGIDTVRNKI 82
I+ G PG GK+T G + + V
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 83 KMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEP 142
A+ L G ++ ++ + A + Y + ++++
Sbjct: 65 FDTAKSI--LYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122
Query: 143 IQSR 146
R
Sbjct: 123 NSKR 126
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 31.8 bits (72), Expect = 0.086
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVL---ELNASNDRGIDTVRNKIKMFAQQKV 90
+ G G GK+T I C+ L P+ ++ EL ++ + R +I M Q
Sbjct: 34 YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 91 TLPP 94
L
Sbjct: 93 LLSS 96
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 31.5 bits (70), Expect = 0.088
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 34 IIISGPPGVGKTTTILCLARILL 56
+++SGP VGK+T + R L
Sbjct: 5 VVLSGPSAVGKST----VVRCLR 23
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.5 bits (70), Expect = 0.095
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
I+++ G+GK+T + A
Sbjct: 38 IMVTSGSGMGKSTFVRQQAL 57
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 31.0 bits (69), Expect = 0.097
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 33 NIIISGPPGVGKTTTILCLARIL 55
+++ GPPG GK T + LA L
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKL 24
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.4 bits (70), Expect = 0.10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 32 PNIIISGPPGVGKTT 46
++ISG P GK T
Sbjct: 4 LKVMISGAPASGKGT 18
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 31.1 bits (69), Expect = 0.10
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 32 PNIIISGPPGVGKTT 46
+ + G PG GK T
Sbjct: 2 LVVFVLGGPGAGKGT 16
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 31.3 bits (70), Expect = 0.10
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAV 64
I+S P G GK++ I L + + +V
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 35
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.0 bits (69), Expect = 0.10
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 33 NIIISGPPGVGKTT 46
N+++ G PG GK T
Sbjct: 2 NLVLMGLPGAGKGT 15
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.1 bits (69), Expect = 0.11
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 33 NIIISGPPGVGKTT 46
II+ G P GK T
Sbjct: 2 RIILLGAPVAGKGT 15
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 31.0 bits (69), Expect = 0.11
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 33 NIIISGPPGVGKTT 46
NI++ G PG GK T
Sbjct: 2 NIVLMGLPGAGKGT 15
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 31.4 bits (70), Expect = 0.13
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I G G+GK+TT L L
Sbjct: 5 CAIYGKGGIGKSTTTQNLVAAL 26
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 30.7 bits (68), Expect = 0.15
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I++ G P GKT L R L
Sbjct: 5 IVMVGLPARGKTYISKKLTRYL 26
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 31.1 bits (70), Expect = 0.15
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
++ GP G GK+ + +A ++ P + LN ++ + R I Q P
Sbjct: 27 CVLLGPTGAGKSVFLELIAG-IVKPD--RGEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 94 P 94
Sbjct: 84 H 84
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 31.0 bits (70), Expect = 0.15
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
+ GP G GK+T L L P+ +L+ + ++ Q+
Sbjct: 43 TALVGPNGSGKSTVAALLQN-LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG 101
Query: 94 PGRHKIVILDEADSMTDGAQQALRR 118
+ + T A
Sbjct: 102 RSLQENIAYGLTQKPTMEEITAAAV 126
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 31.1 bits (69), Expect = 0.16
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 2 EKYRPQTFSDIVGNEDTVERL--------KVFSSSGNVP--NIIISGPPGVGKTTT 47
E Y + I+ D V R+ + +S P ++++ GPP GKT
Sbjct: 1 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTAL 56
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 30.7 bits (68), Expect = 0.17
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 33 NIIISGPPGVGKTT 46
+++ GPPG GK T
Sbjct: 4 RMVLIGPPGAGKGT 17
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 30.8 bits (68), Expect = 0.17
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 31 VPNIIISGPPGVGKTTTILCLARIL 55
P I I GP G GK T L + +
Sbjct: 3 APVITIDGPSGAGKGT----LCKAM 23
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 31.1 bits (70), Expect = 0.17
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 28 SGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLEL 67
S P I ++G G G +T +I K +E
Sbjct: 1 SKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG 40
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 30.3 bits (67), Expect = 0.18
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 33 NIIISGPPGVGKTT 46
++ GPPG GK T
Sbjct: 5 RAVLLGPPGAGKGT 18
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 30.2 bits (67), Expect = 0.19
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 34 IIISGPPGVGKTT 46
+++ G GVG+
Sbjct: 6 LVLLGAHGVGRRH 18
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 30.7 bits (69), Expect = 0.20
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
I I G G GK+T + R P +++ + + +R ++ + Q L
Sbjct: 32 IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD-NVLL 89
Query: 94 PGRHKIVILDEADSMTDGAQQALRRTMEI 122
I M+ +
Sbjct: 90 NRSIIDNISLANPGMSVEKVIYAAKLAGA 118
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.7 bits (68), Expect = 0.21
Identities = 24/179 (13%), Positives = 60/179 (33%), Gaps = 13/179 (7%)
Query: 33 NIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTL 92
+++++G G GK+ + LA L D ++ ++ + D R+K +
Sbjct: 52 HLLVNGATGTGKSVLLRELAYTGL--LRGDRMVIVDPNGDMLSKFGRDKDIILN----PY 105
Query: 93 PPGRHKIVILDEADSMTDGAQQA-------LRRTMEIYSNTTRFALACNNSEKIIEPIQS 145
+E + D + A E +++ R L + + S
Sbjct: 106 DQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPS 165
Query: 146 RCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG 204
+ + + L +E E++ ++ + +A+ + L + +G
Sbjct: 166 MRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDG 224
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.0 bits (66), Expect = 0.22
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
++ G G GK+ +A L
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQL 30
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 30.5 bits (67), Expect = 0.24
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 34 IIISGPPGVGKTTTILCLA 52
+ G GKT LA
Sbjct: 26 TEMFGEFRTGKTQICHTLA 44
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.3 bits (67), Expect = 0.25
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73
++ G G GKTT R L ++K A + L+
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGVKE 41
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.3 bits (67), Expect = 0.25
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDR 73
I+ +G G GKT + + + S +
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ 68
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.9 bits (66), Expect = 0.27
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 32 PNIIISGPPGVGKTT 46
+ + G PG GK T
Sbjct: 7 NVVFVLGGPGSGKGT 21
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 29.9 bits (67), Expect = 0.27
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 36 ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP 94
GP G+GKTT + ++ L P + + N I V+ KI ++ +
Sbjct: 32 FHGPNGIGKTTLLKTIST-YLKPLKGEIIY-----NGVPITKVKGKIFFLPEEIIVPRK 84
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.9 bits (66), Expect = 0.33
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 33 NIIISGPPGVGKTTTIL-CLARILLGPSFKDAVLE 66
I+ PG GKT L + R + + +L
Sbjct: 11 LTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILA 45
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.5 bits (66), Expect = 0.35
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 21/108 (19%)
Query: 34 IIISGPPGVGKTTTILCLARILLG-PSFKDAVLELNASND----------RGIDTVRN-- 80
++++G G+GK+ L I D +E+ + + +R
Sbjct: 18 VLLTGRSGIGKSE--CALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFMEIRGLG 75
Query: 81 --KIKMFAQQKVTLPPGRHKIVI-LDEADSMTDGAQQAL---RRTMEI 122
++ F ++T ++++ L + T + L + +
Sbjct: 76 IINVERFYGLQITKQRTEIQLMVNLLSLEKQTTVTFERLGTELKKQRL 123
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.5 bits (66), Expect = 0.41
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLE----LNASNDRGIDTVRNKIKMFAQQK 89
+I+ GP G GKTTT+ +A L PS + + + I M Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 90 VTLPP 94
P
Sbjct: 91 ALYPH 95
>d2if6a1 d.3.1.21 (A:19-200) Hypothetical protein YiiX {Escherichia
coli [TaxId: 562]}
Length = 182
Score = 29.3 bits (65), Expect = 0.45
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 8/120 (6%)
Query: 161 LSKVIEICEKENISH----TNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKV 216
SK I++ + SH + VF A G ++ H G YV +
Sbjct: 17 QSKAIQLATHSDYSHTGMLVMRNKKPYVFEAVGPVKYTPLKQWIAHGEKGK----YVVRR 72
Query: 217 CDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKL 276
+ + ++ L + + Y +++ +++ A + + E KL
Sbjct: 73 VEGGLSVEQQQKLAQTAKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKL 132
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 29.4 bits (65), Expect = 0.47
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 8 TFSDIVGNEDTVERLK-----------VFSSSGNVPN--IIISGPPGVGKTTTI 48
T+ DI G ED L+ F G P+ ++ GPPG GKT
Sbjct: 5 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 58
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.3 bits (64), Expect = 0.53
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 21 RLKVFSSSGNV-----PNI-IISGPPGVGKTTTILCLARILLGPSFKDAV 64
+K F S + I +I G G GK++ + + L P +
Sbjct: 7 TVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDI 56
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.5 bits (62), Expect = 0.53
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 33 NIIISGPPGVGKTTTIL 49
++ PG GKT L
Sbjct: 9 TTVLDFHPGAGKTRRFL 25
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 29.3 bits (64), Expect = 0.60
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 33 NIIISGPPGVGKTTTILCLARILL 56
++ G GKT I L+
Sbjct: 16 PCLVLAGAGSGKTRVITNKIAHLI 39
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 29.2 bits (65), Expect = 0.60
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I + G G+GK+TT +A
Sbjct: 9 IYLDGVYGIGKSTTGRVMASAA 30
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.9 bits (64), Expect = 0.60
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 4/123 (3%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLE---LNASNDRGIDTVRNKIKMFAQQKV 90
I GP G GKTT + +A L PS + + + ++ + KI M Q
Sbjct: 34 FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 91 TLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAML 150
P I +M ++ +R E+ + + ++ Q R A+
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152
Query: 151 RYN 153
R
Sbjct: 153 RAL 155
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 29.0 bits (65), Expect = 0.63
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 36 ISGPPGVGKTTTILCLARILLGPS-------------FKDAVLELNASNDRGIDTVRNKI 82
I G G GK+T + C+ L PS +D +L ++ + +R ++
Sbjct: 33 IIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91
Query: 83 KMFAQQKVTLPP 94
M Q
Sbjct: 92 TMVFQHFNLWSH 103
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 28.7 bits (63), Expect = 0.63
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVL 65
I+I G G GKTT + L +D V
Sbjct: 5 IVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 36
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 28.7 bits (64), Expect = 0.66
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSF-KDAVLELNASNDRGI 75
++I+G GVGK+ L + G D +++ +++ I
Sbjct: 17 VLITGDSGVGKSE--TALELVQRGHRLIADDRVDVYQQDEQTI 57
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.8 bits (63), Expect = 0.66
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 30 NVPNIIISGPPGVGKTT 46
I + G PG GK T
Sbjct: 7 KSKIIFVVGGPGSGKGT 23
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.7 bits (63), Expect = 0.66
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
++ G PG GK+T I
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSA 38
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 28.9 bits (63), Expect = 0.67
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 34 IIISGPPGVGKTTTILCLA 52
+ G GK+ LA
Sbjct: 37 TELFGEFRTGKSQLCHTLA 55
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 28.8 bits (64), Expect = 0.68
Identities = 13/59 (22%), Positives = 19/59 (32%)
Query: 36 ISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP 94
I GP G GK+T I + L + + +N + I Q L
Sbjct: 35 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 0.71
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
+ I G GKTT L++ L
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTL 46
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.9 bits (63), Expect = 0.77
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 9/55 (16%)
Query: 7 QTFSDIVGNEDTVERLKVFSSS------GNVPN---IIISGPPGVGKTTTILCLA 52
T + V + S G + + G GKT L
Sbjct: 4 LTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLC 58
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 28.7 bits (64), Expect = 0.83
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 22/126 (17%)
Query: 11 DIVGN----EDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLE 66
+ V ++ +E++K S + ++I+G GVGK +AR++ S +
Sbjct: 1 EYVFESPKMKEILEKIKKISCAEC--PVLITGESGVGKEV----VARLIHKLSDRSKEPF 54
Query: 67 LNASNDRGIDTVRNKIKMFAQQK--VTLPPGRHK---------IVILDEADSMTDGAQQA 115
+ N I + ++F +K T + + LDE ++ AQ
Sbjct: 55 VA-LNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAK 113
Query: 116 LRRTME 121
L R +E
Sbjct: 114 LLRVIE 119
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 28.8 bits (63), Expect = 0.83
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 33 NIIISGPPGVGKTTTILCLARILL 56
++I G GKT + L+
Sbjct: 26 PLLIMAGAGSGKTRVLTHRIAYLM 49
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 28.4 bits (63), Expect = 0.85
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 36 ISGPPGVGKTTTILCLARIL 55
+ GP G GKTTT+ ++ ++
Sbjct: 33 LIGPNGAGKTTTLRIISTLI 52
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 28.5 bits (62), Expect = 0.86
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 34 IIISGP-PGVGKTTTILCLARIL 55
++G VGKT L +
Sbjct: 4 YFVTGTDTEVGKTVASCALLQAA 26
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 28.8 bits (64), Expect = 0.88
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
+ I GP G+GKTTT L +
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALG 28
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.5 bits (63), Expect = 0.95
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
+I GP G GKT + +A + S + + L+ + + ++ I Q P
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGR---ILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.0 bits (62), Expect = 0.96
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
++I+G G+GK+ T L L +
Sbjct: 18 VLITGDSGIGKSETALELIK 37
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.4 bits (62), Expect = 0.98
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 33 NIIISGPPGVGKTTTILCLAR 53
++ G GKT + L
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLT 22
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 28.2 bits (63), Expect = 1.1
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
+ G G GK+T I + R + +++ + D ++RN+I + QQ L
Sbjct: 47 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILF 104
Query: 94 PG 95
Sbjct: 105 SD 106
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.0 bits (61), Expect = 1.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 23 KVFSSSGNVPNIIISGPPGVGKTTTILCLA 52
K+ S+ I++ G GKTT + LA
Sbjct: 8 KLKSAPDQEVRILLLGLDNAGKTTLLKQLA 37
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.4 bits (62), Expect = 1.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 34 IIISGPPGVGKTTTILCLA 52
++SG G GKT +
Sbjct: 29 TLVSGTSGTGKTLFSIQFL 47
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 28.2 bits (62), Expect = 1.2
Identities = 26/276 (9%), Positives = 69/276 (25%), Gaps = 34/276 (12%)
Query: 10 SDIVGNEDTVERLK---VFSSSGNVPNIIISGPPGVGKTTTILCLAR--ILLGPSFKDAV 64
E V+R+ + + + G G GK+ L D++
Sbjct: 20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSI 79
Query: 65 LELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYS 124
+ L S T + L + + ++ + +
Sbjct: 80 VWLKDSGTAPKSTFDLFT----DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL---- 131
Query: 125 NTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIV 184
+ N+ + + + + +L + + IS+ +
Sbjct: 132 ------IDRPNTLFVFDDVVQEETIRWAQ-----ELRLRCLVTTRDVEISNAASQTCEFI 180
Query: 185 FTAQGDMRQALNNLQS-----THNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKD 239
++ + + L++ ++ +P + +C K
Sbjct: 181 EVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG-NPATLMMFFKSC---EPKT 236
Query: 240 SYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLK 275
K+ KL + I + + L+
Sbjct: 237 FEKMAQLNNKLESRGLVGVECITPYSYK-SLAMALQ 271
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.0 bits (61), Expect = 1.3
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 32 PNII-ISGPPGVGKTTTILCLARIL 55
P +I +SG GK++ + ++L
Sbjct: 2 PFLIGVSGGTASGKSSVCAKIVQLL 26
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 28.1 bits (61), Expect = 1.3
Identities = 21/165 (12%), Positives = 54/165 (32%), Gaps = 13/165 (7%)
Query: 35 IISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPP 94
+SG G GK+TT+ L+ + + G + + +
Sbjct: 28 TLSGGNGAGKSTTMAAFVTALIPDLTLLHF---RNTTEAGATSGSRDKGLHGK-----LK 79
Query: 95 GRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNK 154
+LD +S + + ++ + R + I+ + +
Sbjct: 80 AGVCYSMLDTINS--RHQRVVVGVRLQQVAGRDRK---VDIKPFAIQGLPMSVQPTQLVT 134
Query: 155 LTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQ 199
T + ++V+ + E ++ +G++ F + D + +L
Sbjct: 135 ETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLG 179
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 36 ISGPPGVGKTTTILCLARIL 55
+ GP G GKTTT+ +A +
Sbjct: 37 LLGPSGCGKTTTLRMIAGLE 56
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 28.1 bits (61), Expect = 1.3
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 7 QTFSDIVGNEDTVERLKVFSSS------GNVPN---IIISGPPGVGKTTTILCLARI 54
+ + T+ R+ S S G + + G G GKT LA +
Sbjct: 3 MRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 59
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 28.0 bits (61), Expect = 1.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 33 NIIISGPPGVGKTTTILCLARIL 55
I I GP GK+T +A+
Sbjct: 5 QIAIDGPASSGKSTVAKIIAKDF 27
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.0 bits (61), Expect = 1.4
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I++ G GK+T L L
Sbjct: 6 IVLEGVDRAGKSTQSRKLVEAL 27
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.8 bits (60), Expect = 1.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 29 GNVPNIIISGPPGVGKTTTILCL 51
G +P I ++G VGK++ I L
Sbjct: 21 GGLPEIALAGRSNVGKSSFINSL 43
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.0 bits (62), Expect = 1.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 36 ISGPPGVGKTTTILCLARIL 55
+ G G GKTTT+ +A ++
Sbjct: 37 LIGANGAGKTTTLSAIAGLV 56
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.6 bits (60), Expect = 1.6
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 23/103 (22%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
++ G G GK+ CL + FKD D+ F + + +
Sbjct: 8 FLVIGNAGTGKS----CLLHQFIEKKFKD-------------DSNHTIGVEFGSKIINVG 50
Query: 94 PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNS 136
K+ I D A Q+ R Y AL +
Sbjct: 51 GKYVKLQIWDTA------GQERFRSVTRSYYRGAAGALLVYDI 87
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.0 bits (62), Expect = 1.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
+ I+G G GKT+ ++ + L
Sbjct: 65 LAITGSTGSGKTSLLMLILGEL 86
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.0 bits (62), Expect = 1.7
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I + G G+GKTT
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHF 29
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.4 bits (59), Expect = 1.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
I+I G G GKTT + L
Sbjct: 8 ILILGLDGAGKTTILYRLQV 27
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.4 bits (59), Expect = 1.7
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I ++G GK L L
Sbjct: 9 IFLTGYMNSGKDAIARALQVTL 30
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 27.6 bits (61), Expect = 1.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 36 ISGPPGVGKTTTILCLARIL 55
+ GP G GK+T + +A +
Sbjct: 30 LVGPNGAGKSTLLARMAGMT 49
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 27.3 bits (59), Expect = 1.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I I G G GK T + L+
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAF 24
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (58), Expect = 2.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
++ G GKTT + L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN 22
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 27.4 bits (60), Expect = 2.0
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 1 IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSF 60
E YR + + + + L + +G GVGK++ + ++ P
Sbjct: 67 AEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAIS-----PEL 121
Query: 61 KDAVLELNASNDRGIDTVR 79
E++ RG T R
Sbjct: 122 GLRTNEISEHLGRGKHTTR 140
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.3 bits (59), Expect = 2.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 32 PNIIISGPPGVGKTTTILCLAR 53
P+III+GP GKT+ + L
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTT 25
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.9 bits (58), Expect = 2.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+++ G GKTT +
Sbjct: 5 LLMLGLDNAGKTTILKKFNG 24
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.0 bits (58), Expect = 2.5
Identities = 21/150 (14%), Positives = 49/150 (32%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
+++ G PGVGK+ + GP + A + S + + +Q
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 94 PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYN 153
H + + D + + R A ++ I+ +S R
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123
Query: 154 KLTDAQLLSKVIEICEKENISHTNDGLEAI 183
+ + + + V + E + + ++A+
Sbjct: 124 SVDEGRACAVVFDCKFIETSAALHHNVQAL 153
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 26.7 bits (58), Expect = 2.6
Identities = 14/112 (12%), Positives = 27/112 (24%), Gaps = 24/112 (21%)
Query: 34 IIISGPPGVGKTT------------TILCLARILLGPSFKDAVLELNASNDRGIDTVRNK 81
+ P G GK+T ++ + F + + + + VR
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI 70
Query: 82 IKMFAQQKVTLPPGRHKI---------VILDEA---DSMTDGAQQALRRTME 121
T +I DE D+ + + E
Sbjct: 71 TTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAE 122
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.0 bits (58), Expect = 2.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
++ G GKTT + L
Sbjct: 16 LVFLGLDNAGKTTLLHMLKD 35
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.5 bits (57), Expect = 3.0
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 31 VPNIIISGPPGVGKTTTILCLAR 53
+ ++ + G P GK++ + + R
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTR 23
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.6 bits (57), Expect = 3.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+ + G GKTT + +A
Sbjct: 5 LTLVGLQYSGKTTFVNVIAS 24
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
maritima [TaxId: 2336]}
Length = 329
Score = 26.9 bits (58), Expect = 3.0
Identities = 16/97 (16%), Positives = 32/97 (32%)
Query: 90 VTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAM 149
V L V L+ A + + + AL + ++ +
Sbjct: 203 VFLGMSEFFGVSLESALKCIEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQKVSGMDEQ 262
Query: 150 LRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFT 186
+ + L + V+E+ E +I +ND A + T
Sbjct: 263 EKRLRKELESLGATVLEVGEGGDIPVSNDWKSAFLRT 299
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 26.6 bits (57), Expect = 3.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 30 NVPNIIISGPPGVGKTTTILCLAR 53
N+ +II G GVGKT+ +
Sbjct: 1 NILKVIILGDSGVGKTSLMHRYVN 24
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.5 bits (57), Expect = 3.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
++I G G GKTT + +
Sbjct: 12 VLIEGNIGSGKTTYLNHFEKYK 33
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 26.5 bits (57), Expect = 3.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
I++ G GKTT + L
Sbjct: 3 ILMVGLDAAGKTTILYKLKL 22
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 3.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
+ ++G G GKTT + L L
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYL 43
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.6 bits (58), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 SSGNVPNII-ISGPPGVGKTTTILCLARIL 55
+ +P II I+G VGK+TT L +L
Sbjct: 75 NGQRIPYIISIAGSVAVGKSTTARVLQALL 104
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.5 bits (57), Expect = 3.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+II G GKTT + +
Sbjct: 18 VIIVGLDNAGKTTILYQFSM 37
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein
Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.4 bits (56), Expect = 4.0
Identities = 6/53 (11%), Positives = 19/53 (35%)
Query: 75 IDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTT 127
++ V N +++ ++ + + + D + R ++ S T
Sbjct: 8 LEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETE 60
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.1 bits (56), Expect = 4.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
I++ G GKTT + L
Sbjct: 15 ILMLGLDAAGKTTILYKLKL 34
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.2 bits (56), Expect = 4.1
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 30 NVP--NIIISGPPGVGKTTTILCLAR 53
N+P +++ G GVGK+ + +
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQ 26
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 26.8 bits (58), Expect = 4.1
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 33 NIIISGPPGVGKTTTILCLARILL 56
++I G GKT + L+
Sbjct: 26 PLLIMAGAGSGKTRVLTHRIAYLM 49
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 26.4 bits (57), Expect = 4.5
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 96 RHKIVILDEADSMTDGAQQALR 117
+ +D+ D++ ++ +
Sbjct: 162 HFDFIFVDDVDAILKASKNVDK 183
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 26.5 bits (57), Expect = 4.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I I G GK+T + L ++
Sbjct: 5 ISIEGNIAAGKSTFVNILKQLC 26
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 26.2 bits (56), Expect = 4.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
+ I G VGK+T + L +
Sbjct: 5 LSIEGNIAVGKSTFVKLLTKTY 26
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 26.3 bits (58), Expect = 4.8
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 22/117 (18%)
Query: 34 IIISGPPGVGKTT----TILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMF---- 85
+I G GKT+ TI+ R G K + + + + TV +K
Sbjct: 71 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDAD 130
Query: 86 AQQKVTL-------PPGRHKIVI---LDEADSMTDGAQQALRRTMEIYSNTTRFALA 132
A + + + + D + AL IY + ++ A+A
Sbjct: 131 AMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALI----IYDDLSKQAVA 183
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.0 bits (56), Expect = 4.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 34 IIISGPPGVGKTTTILCLARIL 55
I+I G GKTT L + L
Sbjct: 6 ILIEGLDRTGKTTQCNILYKKL 27
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli
[TaxId: 562]}
Length = 195
Score = 26.0 bits (57), Expect = 5.1
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 2 EKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLAR 53
E+ ++G ++ + R N ++ G PGVGKT + LA+
Sbjct: 14 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 17 DTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCL-ARILLG 57
D E L +I + G GKT TI L R+LLG
Sbjct: 3 DVAETLDPLRLPLQGERLIEASA-GTGKTFTIAALYLRLLLG 43
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.9 bits (55), Expect = 5.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 33 NIIISGPPGVGKTTTILCLAR 53
++I+G P GK++ + LA
Sbjct: 3 KVVIAGRPNAGKSSLLNALAG 23
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.9 bits (55), Expect = 5.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+ I G P VGK+T + L
Sbjct: 8 VAIVGKPNVGKSTLLNNLLG 27
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.9 bits (55), Expect = 5.5
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 30 NVPNIIISGPPGVGKTTTILCL 51
+ +G GK++ + L
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTL 36
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.8 bits (56), Expect = 5.6
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 7 QTFSDIVGNEDTVERL-----KVFSSSGNVPNIII--SGPPGVGKTTTILCLARI 54
++ + + +E ++ R ++ I++ +G G GKTT + +
Sbjct: 2 ESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 25.6 bits (55), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
I+I G VGKT+ + A
Sbjct: 8 ILIIGNSSVGKTSFLFRYAD 27
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 26.2 bits (57), Expect = 6.5
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLAR 53
+ E +SG V I++G GKT + L
Sbjct: 110 SPVVAEFGGHRYASGMV---IVTGKGNSGKTPLVHALGE 145
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 25.6 bits (55), Expect = 6.6
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 23/100 (23%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
+++ G GVGK+ CL ++ + D + F + V L
Sbjct: 9 LLLIGNSGVGKS----CLLLRFSDDTYTN-------------DYISTIGVDFKIKTVELD 51
Query: 94 PGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALAC 133
K+ I D A Q+ R Y + +
Sbjct: 52 GKTVKLQIWDTA------GQERFRTITSSYYRGSHGIIIV 85
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 25.4 bits (54), Expect = 6.6
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+++ G VGK++ I +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 25.5 bits (56), Expect = 6.6
Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 32/130 (24%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPS----------------------FKDA------VL 65
++ GP GK+ + + G DA
Sbjct: 56 LVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYF 115
Query: 66 ELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSN 125
+ N + + K ++ PP I++ D L + ++
Sbjct: 116 DTYMRNALDGNPISIDRKHKPLIQLKCPP----ILLTTNIHPAKDNRWPYLESRITVFEF 171
Query: 126 TTRFALACNN 135
F N
Sbjct: 172 PNAFPFDKNG 181
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 25.6 bits (55), Expect = 6.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+++ G GVGKT ++
Sbjct: 9 VMLVGDSGVGKTCLLVRFKD 28
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 25.4 bits (54), Expect = 7.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+II G GVGKT+ +
Sbjct: 5 VIILGDSGVGKTSLMNQYVN 24
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.6 bits (55), Expect = 7.5
Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 38/213 (17%)
Query: 34 IIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLP 93
I++ G GK+T + ++ + GI +IK + V +
Sbjct: 5 ILLLGAGESGKSTFLK---QMRIIHGQDPTK---------GIHEYDFEIKNVPFKMVDVG 52
Query: 94 PGRHKIVILDEADSMTDGAQQALRRT-----MEIYSNTTRFALACNNSEKIIEPIQSRCA 148
R + E + + + T R + N E I+
Sbjct: 53 GQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 112
Query: 149 MLRYNKLTDAQLLSKV----IEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNG 204
+ L KV I+ E + + F + + Q
Sbjct: 113 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVE--CFRGKRRDQQQRPL 170
Query: 205 FGHVTA-------EYVFKVCDEPHPLAVKEMLL 230
+ H T VF+ VK+ +L
Sbjct: 171 YHHFTTAINTENIRLVFR--------DVKDTIL 195
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 25.6 bits (55), Expect = 7.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 15 NEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLAR 53
+ED + LK I+I G GVGK++ +L
Sbjct: 1 DEDVLTTLK----------ILIIGESGVGKSSLLLRFTD 29
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.3 bits (54), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 34 IIISGPPGVGKTTTILCL 51
I+I G G GKTT + L
Sbjct: 20 ILILGLDGAGKTTILYRL 37
>d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 162
Score = 25.4 bits (56), Expect = 8.0
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 35/88 (39%)
Query: 41 GVGKTTTILCLAR-------ILLGPS---FKDAVLELNASNDRGIDT------------V 78
G G T T L IL+ S F D +NAS G V
Sbjct: 20 GTGITITPQELLTRPADAPYILVVSSAFDFADIASVINASLRAGYQITGVILQRDDGVLV 79
Query: 79 RNKIKMFAQQKVTLPPGRHKIVILDEAD 106
N+++ + I+DE
Sbjct: 80 SNRLE-------------KPLPIVDEVL 94
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 25.7 bits (56), Expect = 8.3
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 74 GIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSM-TDGAQQALRRTMEIYSNTT 127
G D +R+ + H I+DE DS+ D A RT I SN T
Sbjct: 198 GFDYLRDNMAHSLDDL---VQRGHHYAIVDEVDSILIDEA-----RTPLIISNQT 244
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 25.4 bits (54), Expect = 8.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
++I G GKT ++ ++
Sbjct: 5 LVIVGDGACGKTCLLIVNSK 24
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.5 bits (56), Expect = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
I + G GVGKT I+ L
Sbjct: 71 IGLFGGAGVGKTVLIMELIN 90
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.4 bits (54), Expect = 8.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+++ G G GKTT +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLT 25
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 25.4 bits (55), Expect = 9.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
+I PP GKT + +A+
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQ 65
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 25.3 bits (54), Expect = 9.2
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 31 VPNIIISGPPGVGKTTTILCLAR 53
+ ++ + G P VGK+T + ++
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSS 23
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.1 bits (53), Expect = 9.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
++I G P VGK+T L +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 25.2 bits (54), Expect = 9.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 34 IIISGPPGVGKTTTILCLAR 53
++ G GVGKTT +
Sbjct: 8 LLALGDSGVGKTTFLYRYTD 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,139,383
Number of extensions: 53549
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 223
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)