BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8791
(706 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FCD|A Chain A, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
pdb|1FCD|B Chain B, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
Length = 401
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 124/317 (39%), Gaps = 61/317 (19%)
Query: 57 QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR 116
+V+++EP D+Y + + GG +KL + + G V D DP+ V+
Sbjct: 29 EVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVK 88
Query: 117 TQAGSEISYEYMIVASGIQMYYDRVKGPSALINA-LGHCDLVRSFVTFPLFFPRRTLDFL 175
T G+E Y+ +VA GI++ YD+++G S A L H
Sbjct: 89 TAGGAEFGYDRCVVAPGIELIYDKIEGYSEEAAAKLPHA--------------------- 127
Query: 176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAV 235
+G Q A+ + K L ++ G V+ PA P +C P +
Sbjct: 128 -WKAGEQTAI---------------LRKQLEDMA--DGGTVVIAPPAAPFRCPPGPYERA 169
Query: 236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRG-----VDVHKG--KA 288
YL+ HK + + F K + L G G ++ H G A
Sbjct: 170 SQVAYYLKAHKPMSKVIILDSSQT---FSKQSQFSKGWERLYGFGTENAMIEWHPGPDSA 226
Query: 289 LVEIDLANK--EAVFKSEDKTERLPYAIMHVTPPM--GPVPELATSRLVDQSGYVNVDKA 344
+V++D E F E K + ++++ PP G + ++A L + +G+ VD
Sbjct: 227 VVKVDGGEMMVETAFGDEFKAD-----VINLIPPQRAGKIAQIAG--LTNDAGWCPVDIK 279
Query: 345 TLQHVKYSNVFAIGDCS 361
T + + + IGD S
Sbjct: 280 TFESSIHKGIHVIGDAS 296
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
+++EP D+Y + + GG +KL + + G V D DP+ V+T
Sbjct: 31 TLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTA 90
Query: 618 AGSEISYEYMIVASGIQMYYDRVKG 642
G+E Y+ +VA GI++ YD+++G
Sbjct: 91 GGAEFGYDRCVVAPGIELIYDKIEG 115
>pdb|3VRD|B Chain B, Crystal Structure Of Flavocytochrome C From
Thermochromatium Tepidum
Length = 401
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 57 QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR 116
+V+++EP + +Y M + GG ++L+ R + G V D + DP+ V+
Sbjct: 29 EVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGIDPDKKLVK 88
Query: 117 TQAGSEISYEYMIVASGIQMYYDRVKGPS-ALINALGHC 154
T G+E +Y+ +VA GI + YD+++G S AL L H
Sbjct: 89 TAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHA 127
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
+++EP + +Y M + GG ++L+ R + G V D + DP+ V+T
Sbjct: 31 TLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGIDPDKKLVKTA 90
Query: 618 AGSEISYEYMIVASGIQMYYDRVKGGTTSL 647
G+E +Y+ +VA GI + YD+++G + +L
Sbjct: 91 GGAEFAYDRCVVAPGIDLLYDKIEGYSEAL 120
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 287 KALVEIDLANKEAVFKSEDKT--------ERLPYAIMHVTPPMGPVPELATSRLVDQSGY 338
AL+E AV K++ + E A++++ PP ++ L + SG+
Sbjct: 214 NALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGW 273
Query: 339 VNVDKATLQHVKYSNVFAIGD-CSNLPTSKTAAAVAGQ 375
VD T + + IGD C+ P K+A + Q
Sbjct: 274 CPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQ 311
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 69 YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 127
+ P F + G +K D P+ +LP ++ +K S DP+ N V TQ+G +I Y+Y
Sbjct: 41 FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 128 MIVASGIQMYY 138
+++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 568 YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 626
+ P F + G +K D P+ +LP ++ +K S DP+ N V TQ+G +I Y+Y
Sbjct: 41 FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 627 MIVASGIQMYY 637
+++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 69 YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 127
+ P F + G +K D P+ +LP ++ +K S DP+ N V TQ+G +I Y+Y
Sbjct: 41 FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 128 MIVASGIQMYY 138
+++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 568 YQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEY 626
+ P F + G +K D P+ +LP ++ +K S DP+ N V TQ+G +I Y+Y
Sbjct: 41 FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDY 100
Query: 627 MIVASGIQMYY 637
+++A+G ++ +
Sbjct: 101 LVIATGPKLVF 111
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V +GP
Sbjct: 69 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
I+ + H + R+F +
Sbjct: 129 SISTVDHAE--RAFAEY 143
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 31 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 90
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 91 ITLADGNTVHYDYLMIATGPKLAFENVPG 119
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V +GP
Sbjct: 69 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
I + H + R+F +
Sbjct: 129 AICTVDHAE--RAFAEY 143
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 31 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 90
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 91 ITLADGNTVHYDYLMIATGPKLAFENVPG 119
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V +GP
Sbjct: 69 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
I + H + R+F +
Sbjct: 129 SIATVDHAE--RAFAEY 143
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 31 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 90
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 91 ITLADGNTVHYDYLMIATGPKLAFENVPG 119
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 6 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 65
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V +GP
Sbjct: 66 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 125
Query: 147 LINALGHCDLVRSFVTF 163
I + H + R+F +
Sbjct: 126 SICTVDHAE--RAFAEY 140
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 28 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 87
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 88 ITLADGNTVHYDYLMIATGPKLAFENVPG 116
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR 525
M H+ ++G G G A + LG G +V+++ D + P +G G K+ D
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 60
Query: 526 PMK 528
P++
Sbjct: 61 PIR 63
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V +GP
Sbjct: 69 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
I + H + R+F +
Sbjct: 129 SICTVDHAE--RAFAEY 143
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 31 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 90
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 91 ITLADGNTVHYDYLMIATGPKLAFENVPG 119
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V +GP
Sbjct: 69 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
I + H + R+F +
Sbjct: 129 SICTVDHAE--RAFAEY 143
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 31 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 90
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 91 ITLADGNTVHYDYLMIATGPKLAFENVPG 119
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRV------KGPSA 146
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V +GP
Sbjct: 69 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 147 LINALGHCDLVRSFVTF 163
I + H + R+F +
Sbjct: 129 SICTVDHAE--RAFAEY 143
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 31 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 90
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 91 ITLADGNTVHYDYLMIATGPKLAFENVPG 119
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS- 92
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 6 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 65
Query: 93 VLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG 143
V G ++ D E + G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 66 VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPG 116
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 557 HSIVEPTDDHYYQ--PMFTLIGGGMKKLSDSRRPMKS-VLPSGATWVKDKIVSFDPENNR 613
H + + + Y+Q P +G G K+ D P++ V G ++ D E
Sbjct: 28 HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQN 87
Query: 614 VRTQAGSEISYEYMIVASGIQMYYDRVKG 642
+ G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 88 ITLADGNTVHYDYLMIATGPKLAFENVPG 116
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR 525
M H+ ++G G G A + LG G +V+++ D + P +G G K+ D
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 60
Query: 526 PMK 528
P++
Sbjct: 61 PIR 63
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 133/343 (38%), Gaps = 42/343 (12%)
Query: 35 VVGGGAAGCSMAAKFTSKL--GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKS 92
+V GG G AA +L K V ++ + Y++P + G++ + + + +
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSE 64
Query: 93 VLPS-GATWVKDKIVSFDPENNRVRTQ----AGSEISYEYMIVASGIQMYYDRVKGPSAL 147
LP G + + + D +++ V + +E Y+Y+IV G + + VKG
Sbjct: 65 ALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG---- 120
Query: 148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRN 207
+ G+ F T + + L G A+ N P+ E + N
Sbjct: 121 WDKYGYSVCEPEFAT-------KLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPN 173
Query: 208 LQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLT-YCTGMGVLFPSP 266
GPV M +L G Y +K D +T + G + SP
Sbjct: 174 ADSACEGPVF-------------EMSLMLHG--YFKKKGMLDKVHVTVFSPGEYLSDLSP 218
Query: 267 FYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE 326
+ + I G+ + + EI E V ++K +P I + PP P
Sbjct: 219 NSRKAVASIYNQLGIKLVHNFKIKEI--REHEIV---DEKGNTIPADITILLPPYTGNPA 273
Query: 327 L--ATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK 367
L +T LVD G++ D + +KY NV+A+GD +++ K
Sbjct: 274 LKNSTPDLVDDGGFIPTD-LNMVSIKYDNVYAVGDANSMTVPK 315
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--YYQPMFTLIGGGMKKLSD------- 85
++G G AG S A + LGK + ++ + YY+P I K + D
Sbjct: 14 ILGAGPAGFSAA---KAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKND 70
Query: 86 --SRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG 143
+ +K + AT S DP N V ++G +I YE +I+ASG +++K
Sbjct: 71 WYEKNNIKVITSEFAT-------SIDPNNKLVTLKSGEKIKYEKLIIASG--SIANKIKV 121
Query: 144 PSA 146
P A
Sbjct: 122 PHA 124
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 567 YYQPMFTLIGGGMKKLSD---------SRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
YY+P I K + D + +K + AT S DP N V +
Sbjct: 46 YYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFAT-------SIDPNNKLVTLK 98
Query: 618 AGSEISYEYMIVASG 632
+G +I YE +I+ASG
Sbjct: 99 SGEKIKYEKLIIASG 113
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ--PMF-TLIGGGMKKLSDSRRPMK 91
+ G G AG +A G+++++ YQ P+ + G S RP K
Sbjct: 6 IAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEK 65
Query: 92 SVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
+ D++VS D E ++ +G+ I Y ++++A+G
Sbjct: 66 FFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATG 107
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 587 RPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
RP K + D++VS D E ++ +G+ I Y ++++A+G
Sbjct: 62 RPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATG 107
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 104 KIVSFDPENNRVRTQAGSEISYEYMIVASG 133
K+V D +N V+ GS+I+YE ++A+G
Sbjct: 130 KVVQLDVRDNMVKLNDGSQITYEKCLIATG 159
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 603 KIVSFDPENNRVRTQAGSEISYEYMIVASG 632
K+V D +N V+ GS+I+YE ++A+G
Sbjct: 130 KVVQLDVRDNMVKLNDGSQITYEKCLIATG 159
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 104 KIVSFDPENNRVRTQAGSEISYEYMIVASG 133
K+V D +N V+ GS+I+YE ++A+G
Sbjct: 112 KVVQLDVRDNMVKLNDGSQITYEKCLIATG 141
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 603 KIVSFDPENNRVRTQAGSEISYEYMIVASG 632
K+V D +N V+ GS+I+YE ++A+G
Sbjct: 112 KVVQLDVRDNMVKLNDGSQITYEKCLIATG 141
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 266 PFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP 325
P A+ + L G GV H G L + A E + E +P ++ + P
Sbjct: 187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-EGLEAHLSDGEVIPCDLVVSAVGLRPRT 245
Query: 326 ELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNL 363
ELA + + + + VD++ ++N++A+GDC+ +
Sbjct: 246 ELAFAAGLAVNRGIVVDRSL--RTSHANIYALGDCAEV 281
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 333 VDQSGYVNVDKATLQHVKYSNVFAIGDCS--NLPTSKTAAAVAGQCKVV----YDNLSAV 386
+D + N+DK + + Y+++ A+GD S LP K A Q K V +D L+++
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397
Query: 387 MKNRALPHEYNGYTSCPLVTGYSK 410
K H SCP + S+
Sbjct: 398 QK--IWLHTNPWDCSCPRIDYLSR 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,286,101
Number of Sequences: 62578
Number of extensions: 925089
Number of successful extensions: 1965
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1912
Number of HSP's gapped (non-prelim): 59
length of query: 706
length of database: 14,973,337
effective HSP length: 106
effective length of query: 600
effective length of database: 8,340,069
effective search space: 5004041400
effective search space used: 5004041400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)