BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8791
(706 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y6N5|SQRD_HUMAN Sulfide:quinone oxidoreductase, mitochondrial OS=Homo sapiens
GN=SQRDL PE=1 SV=1
Length = 450
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/455 (44%), Positives = 287/455 (63%), Gaps = 46/455 (10%)
Query: 25 SSSSHSCK----LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
+ +SH+ + +LV+GGG+ G +MAA+ K+G V+IVEP++ H+YQP++TL+G G
Sbjct: 34 TGASHAARNHYEVLVLGGGSGGITMAARMKRKVGAENVAIVEPSERHFYQPIWTLVGAGA 93
Query: 81 KKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDR 140
K+LS S RP SV+PSG W+K ++ +P+ N + T +ISY Y+I+A GIQ+ Y++
Sbjct: 94 KQLSSSGRPTASVIPSGVEWIKARVTELNPDKNCIHTDDDEKISYRYLIIALGIQLDYEK 153
Query: 141 VKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQY 200
+KG L E P G +NYS +
Sbjct: 154 IKG-------------------------------------LPEGFAHPKIG--SNYSVKT 174
Query: 201 VEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMG 260
VEKT + LQ F+ G ++TFP TP+KC GAP K + + + Y RK KR A + + T +G
Sbjct: 175 VEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLG 234
Query: 261 VLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPYAIMHV 317
+F YA+ + +I+ R + V+ K L+E+ +EAVF++ DK T+ + Y ++HV
Sbjct: 235 AIFGVKKYADALQEIIQERNLTVNYKKNLIEVRADKQEAVFENLDKPGETQVISYEMLHV 294
Query: 318 TPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCK 377
TPPM P L TS + D +G+V+VDK TLQH +Y NVF IGDC+NLPTSKTAAAVA Q
Sbjct: 295 TPPMSPPDVLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKTAAAVAAQSG 354
Query: 378 VVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLM 437
++ +S +MKN+ +Y+GYTSCPLVTGY++ ++AEFDY +PLETFP DQSKER M
Sbjct: 355 ILDRTISVIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYKAEPLETFPFDQSKERLSM 414
Query: 438 FQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
+ MK +MPFLYWN+MLRGYW GP R++FHLG+
Sbjct: 415 YLMKADLMPFLYWNMMLRGYWGGPAFLRKLFHLGM 449
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
+IVEP++ H+YQP++TL+G G K+LS S RP SV+PSG W+K ++ +P+ N + T
Sbjct: 72 AIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVTELNPDKNCIHTD 131
Query: 618 AGSEISYEYMIVASGIQMYYDRVKG 642
+ISY Y+I+A GIQ+ Y+++KG
Sbjct: 132 DDEKISYRYLIIALGIQLDYEKIKG 156
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSR 524
R + + V+GGG+ G +MAA+ ++G V+IVEP++ H+YQP++TL+G G K+LS S
Sbjct: 41 RNHYEVLVLGGGSGGITMAARMKRKVGAENVAIVEPSERHFYQPIWTLVGAGAKQLSSSG 100
Query: 525 RPMKSVLPSGATWVKDKIVSFD 546
RP SV+PSG W+K ++ +
Sbjct: 101 RPTASVIPSGVEWIKARVTELN 122
>sp|Q9R112|SQRD_MOUSE Sulfide:quinone oxidoreductase, mitochondrial OS=Mus musculus
GN=Sqrdl PE=2 SV=3
Length = 450
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/457 (44%), Positives = 284/457 (62%), Gaps = 42/457 (9%)
Query: 19 FSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG 78
T ++ + ++LV+GGGA G +MA + ++G V+IVEP++ H+YQP++TL+G
Sbjct: 32 LHTGACCTAKNHYEVLVLGGGAGGITMATRMKRRVGAENVAIVEPSERHFYQPIWTLVGA 91
Query: 79 GMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYY 138
G K+LS S R SV+PSG W++D++ +P+ N +RT +G EISY Y+I+A GIQ+ Y
Sbjct: 92 GAKELSLSVRSTLSVIPSGVQWIQDRVAELNPDENCIRTDSGKEISYRYLIIALGIQLDY 151
Query: 139 DRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSP 198
+++KG L E P G +NYS
Sbjct: 152 EKIKG-------------------------------------LPEGFAYPKIG--SNYSV 172
Query: 199 QYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTG 258
+ VEKT + LQ F+ G L+TFP TP+KC GAP K + + + Y RK KR A + + T
Sbjct: 173 KTVEKTWKALQGFKEGNALFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRPKANIIFNTA 232
Query: 259 MGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK---TERLPYAIM 315
+G +F YA+ + +I+ R V V+ L+E+ +EAVF+ DK T +PY ++
Sbjct: 233 LGTIFGVKKYADALQEIIRERDVSVNYKHNLIEVRPDKQEAVFEILDKPGETHVIPYEML 292
Query: 316 HVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQ 375
HVTPPM L S + D +G+V+VDK TLQH KY NVF IGDC+NLPTSKTAAAVA Q
Sbjct: 293 HVTPPMSAPDVLKRSPVADSAGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKTAAAVAAQ 352
Query: 376 CKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERS 435
++ + +MKN+ +Y+GYTSCPLVTGY++ ++AEFDYT +PLETFP DQSKER
Sbjct: 353 SGILDRTMCLIMKNQRPIKKYDGYTSCPLVTGYNRVILAEFDYTAQPLETFPFDQSKERI 412
Query: 436 LMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHLGV 472
M+ MK +MPFLYWN+MLRGYW GP R++FHLG+
Sbjct: 413 TMYLMKADMMPFLYWNMMLRGYWGGPAFLRKLFHLGM 449
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 65/85 (76%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
+IVEP++ H+YQP++TL+G G K+LS S R SV+PSG W++D++ +P+ N +RT
Sbjct: 72 AIVEPSERHFYQPIWTLVGAGAKELSLSVRSTLSVIPSGVQWIQDRVAELNPDENCIRTD 131
Query: 618 AGSEISYEYMIVASGIQMYYDRVKG 642
+G EISY Y+I+A GIQ+ Y+++KG
Sbjct: 132 SGKEISYRYLIIALGIQLDYEKIKG 156
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 481 SMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD 540
+MA + R+G V+IVEP++ H+YQP++TL+G G K+LS S R SV+PSG W++D
Sbjct: 57 TMATRMKRRVGAENVAIVEPSERHFYQPIWTLVGAGAKELSLSVRSTLSVIPSGVQWIQD 116
Query: 541 KIVSFD 546
++ +
Sbjct: 117 RVAELN 122
>sp|Q54DK1|SQRD_DICDI Sulfide:quinone oxidoreductase, mitochondrial OS=Dictyostelium
discoideum GN=sqrdl PE=3 SV=1
Length = 452
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/433 (42%), Positives = 255/433 (58%), Gaps = 42/433 (9%)
Query: 31 CKLLVVGGGAAGCSMAAKFTSKL-GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP 89
K+++VGGGA G S+A++ K KG + IVEP++ HYYQP++TL+GGG+ DS +
Sbjct: 45 TKIVIVGGGAGGLSVASQLEHKFKNKGDIVIVEPSEKHYYQPLWTLVGGGIFSRKDSEKD 104
Query: 90 MKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALIN 149
K +P GATWVKD + F PE N V T+ G EI Y+Y++V++G+++Y+DRVKG
Sbjct: 105 EKDFIPKGATWVKDSVTVFKPEENIVLTKDGKEIDYDYLVVSTGLELYWDRVKG------ 158
Query: 150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQ 209
L+E L + +GV++NYS EKT ++
Sbjct: 159 -------------------------------LKENLGK--NGVTSNYSYDSCEKTFEFIK 185
Query: 210 HFQSGPV-LYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFY 268
+ G V ++T P T +KCGGAP K + + D+YLRKH RD +L + + +FP Y
Sbjct: 186 SLKPGNVAIFTVPTTGVKCGGAPQKILWLCDDYLRKHGIRDKVRLDFNSAGASMFPVKKY 245
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA 328
+E + + RGV+ + LVEI +KEAVF++ + + Y ++HV PPMGP +
Sbjct: 246 SEVLDKMAKERGVNQNFAHNLVEIKGDSKEAVFETPQGNKTVKYDMIHVVPPMGPHSVIK 305
Query: 329 TSRLVD-QSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVM 387
S L D +G+VNVDK TLQHVKY NVF++GD SNLPTSKTAAA+ Q ++ NL
Sbjct: 306 NSPLADPATGFVNVDKGTLQHVKYDNVFSLGDTSNLPTSKTAAAITSQAPILVGNLINHK 365
Query: 388 KNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQSKERSLMFQMKKQVMPF 447
L H+Y+GYTSCP+ T YSK ++AEF Y + E+ P DQSKE +KK V P
Sbjct: 366 LGLPLNHKYDGYTSCPITTSYSKIILAEFKYGFEVDESLPFDQSKESYFPMFLKKYVFPT 425
Query: 448 LYWNLMLRGYWNG 460
YW ML+G W G
Sbjct: 426 AYWEGMLKGRWFG 438
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 78/119 (65%), Gaps = 4/119 (3%)
Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQA 618
IVEP++ HYYQP++TL+GGG+ DS + K +P GATWVKD + F PE N V T+
Sbjct: 75 IVEPSEKHYYQPLWTLVGGGIFSRKDSEKDEKDFIPKGATWVKDSVTVFKPEENIVLTKD 134
Query: 619 GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKMRGVSDGFSTVTWEQKHKQYQLVSP 677
G EI Y+Y++V++G+++Y+DRVKG L++ GV+ +S + E+ + + + P
Sbjct: 135 GKEIDYDYLVVSTGLELYWDRVKG----LKENLGKNGVTSNYSYDSCEKTFEFIKSLKP 189
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 464 FRQMFHLGVVGGGAAGCSMAAKFTSRL-GKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSD 522
+ + + +VGGGA G S+A++ + KG + IVEP++ HYYQP++TL+GGG+ D
Sbjct: 41 LKNVTKIVIVGGGAGGLSVASQLEHKFKNKGDIVIVEPSEKHYYQPLWTLVGGGIFSRKD 100
Query: 523 SRRPMKSVLPSGATWVKDKIVSF 545
S + K +P GATWVKD + F
Sbjct: 101 SEKDEKDFIPKGATWVKDSVTVF 123
>sp|O94284|HMT2_SCHPO Sulfide:quinone oxidoreductase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hmt2 PE=3 SV=1
Length = 459
Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/461 (35%), Positives = 251/461 (54%), Gaps = 64/461 (13%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGK---------------GQVSIVEPTDDHYYQ 70
+S+H K+LVVGGG+AG S+A + +K K G++ IV+ HYYQ
Sbjct: 25 ASTHH-KVLVVGGGSAGISVAHQIYNKFSKYRFANDQGKDTSLKPGEIGIVDGAKYHYYQ 83
Query: 71 PMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV-SFDPENNRVRTQAGSEISYEYMI 129
P +TL G G+ ++ +RR + S++P+ + + V S P N++ TQ+G EISY+Y++
Sbjct: 84 PGWTLTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVTQSGQEISYDYLV 143
Query: 130 VASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPD 189
+A+GI + R+KG L EALD P+
Sbjct: 144 MAAGIYTDFGRIKG-------------------------------------LTEALDDPN 166
Query: 190 SGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRD 249
+ V T YS +Y + ++ +SG ++T P+ +KC GAP K + + ++Y R+HK R
Sbjct: 167 TPVVTIYSEKYADAVYPWIEKTKSGNAIFTQPSGVLKCAGAPQKIMWMAEDYWRRHKVRS 226
Query: 250 AAKLTYCTGMGVLFPSPFYAEKI--HDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT 307
+++ TGM LF Y++ + + + R V ++ LVE+ + ++AVFK+ +
Sbjct: 227 NIDVSFYTGMPTLFSVKRYSDALLRQNEQLHRNVKINYKDELVEVKGSERKAVFKNLNDG 286
Query: 308 ERL--PYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT 365
P+ ++H P M +A S L D+SG+V VD++T Q K+ NVFAIGDCS LPT
Sbjct: 287 SLFERPFDLLHAVPSMRSHEFIAKSDLADKSGFVAVDQSTTQSTKFPNVFAIGDCSGLPT 346
Query: 366 SKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLET 425
SKT AA+ Q V+ NL + + + L YNGYTSCPL+TGY K ++AEF Y +P E+
Sbjct: 347 SKTYAAITAQAPVMVHNLWSFVNGKNLTASYNGYTSCPLLTGYGKLILAEFLYKQEPKES 406
Query: 426 FP-----VDQSKERSLMFQMKKQVMPFLYWNLMLR-GYWNG 460
F +DQ+ R + + +KK PF+YWN +R G W G
Sbjct: 407 FGRFSRFLDQTVPRRMFYHLKKDFFPFVYWNFAVRNGKWYG 447
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIV-SFDPENNRVRTQ 617
IV+ HYYQP +TL G G+ ++ +RR + S++P+ + + V S P N++ TQ
Sbjct: 73 IVDGAKYHYYQPGWTLTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVTQ 132
Query: 618 AGSEISYEYMIVASGIQMYYDRVKGGTTSLED 649
+G EISY+Y+++A+GI + R+KG T +L+D
Sbjct: 133 SGQEISYDYLVMAAGIYTDFGRIKGLTEALDD 164
>sp|Q06530|DHSU_ALLVD Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain
OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 /
NBRC 103801 / D) GN=fccB PE=1 SV=3
Length = 431
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 137/347 (39%), Gaps = 62/347 (17%)
Query: 57 QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR 116
+V+++EP D+Y + + GG +KL + + G V D DP+ V+
Sbjct: 59 EVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVK 118
Query: 117 TQAGSEISYEYMIVASGIQMYYDRVKGPSALINA-LGHCDLVRSFVTFPLFFPRRTLDFL 175
T G+E Y+ +VA GI++ YD+++G S A L H
Sbjct: 119 TAGGAEFGYDRCVVAPGIELIYDKIEGYSEEAAAKLPHA--------------------- 157
Query: 176 RRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAV 235
+G Q A+ + K L ++ G V+ PA P +C P +
Sbjct: 158 -WKAGEQTAI---------------LRKQLEDMA--DGGTVVIAPPAAPFRCPPGPYERA 199
Query: 236 LIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRG-----VDVHKG--KA 288
YL+ HK + + + F K + L G G ++ H G A
Sbjct: 200 SQVAYYLKAHKPKSKVIILDSSQT---FSKQSQFSKGWERLYGFGTENAMIEWHPGPDSA 256
Query: 289 LVEIDLANK--EAVFKSEDKTERLPYAIMHVTPPM--GPVPELATSRLVDQSGYVNVDKA 344
+V++D E F E K + ++++ PP G + ++A L + +G+ VD
Sbjct: 257 VVKVDGGEMMVETAFGDEFKAD-----VINLIPPQRAGKIAQIAG--LTNDAGWCPVDIK 309
Query: 345 TLQHVKYSNVFAIGD-CSNLPTSKTAAAVAGQCKVVYDNLSAVMKNR 390
T + + + IGD C P K+ + Q KV + A++K
Sbjct: 310 TFESSIHKGIHVIGDACIANPMPKSGYSANSQGKVAAAAVVALLKGE 356
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQ 617
+++EP D+Y + + GG +KL + + G V D DP+ V+T
Sbjct: 61 TLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTA 120
Query: 618 AGSEISYEYMIVASGIQMYYDRVKG 642
G+E Y+ +VA GI++ YD+++G
Sbjct: 121 GGAEFGYDRCVVAPGIELIYDKIEG 145
>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum
GN=DDB_G0270104 PE=3 SV=2
Length = 451
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/384 (20%), Positives = 146/384 (38%), Gaps = 58/384 (15%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
KL+++G G S S K ++++ P + + P+ T G + P++
Sbjct: 41 KLIILGCGWGSYSFLKNLNSI--KYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVR 98
Query: 92 SVLPSGA-TWVKDKIVSFDPENNRVRTQAGS------EISYEYMIVASGIQMYYDRVKG- 143
+ +++ + S +PENN V ++ E+ Y+ +++ G + +KG
Sbjct: 99 TTRDINEFKYIQASVTSINPENNSVLVKSTFHNEKPFEMKYDKLVIGVGSRNNTFGIKGV 158
Query: 144 --PSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYV 201
+ + L H +R + F R +L P E ++ S V +
Sbjct: 159 EENANFLKELHHAREIRQKII--ECFERASL-----PDVSTEERERLLSFVIVGGGATGI 211
Query: 202 EKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGV 261
E T L F S + FP P+ + K+ G
Sbjct: 212 EFT-SELNDFFSEDLSRLFPFVPV-----------------------NEVKIILLEASGK 247
Query: 262 LFPSPFYAEKIHDILIG---RGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVT 318
+ S F + + LI G+DV ++ E+ K+ V D +R+PY ++ +
Sbjct: 248 IL-STFDQKLVKKALINFRNSGIDVRTHSSVKEVL---KDYVIL--DNGDRIPYGLLVWS 301
Query: 319 PPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNL------PTSKTAAAV 372
+G P + S S + L+ YSNVF+ GDC+N+ PT++ A+
Sbjct: 302 TGIGQHPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCANVENKNYPPTAQVASQS 361
Query: 373 AGQCKVVYDNLSAVMKNRALPHEY 396
A ++NL + N P +
Sbjct: 362 AVYLAKEFNNLEKLNPNPPKPFAF 385
>sp|Q9AL95|NROR_CLOAB NADH-rubredoxin oxidoreductase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=nroR PE=1 SV=1
Length = 379
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 23/128 (17%)
Query: 30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--YYQPMFTLIGGGMKKLSD-- 85
S K+L++G G AG S A + LGK + ++ + YY+P I K + D
Sbjct: 3 STKILILGAGPAGFSAA---KAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDIL 59
Query: 86 -------SRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYY 138
+ +K + AT S DP N V ++G +I YE +I+ASG
Sbjct: 60 IKKNDWYEKNNIKVITSEFAT-------SIDPNNKLVTLKSGEKIKYEKLIIASG--SIA 110
Query: 139 DRVKGPSA 146
+++K P A
Sbjct: 111 NKIKVPHA 118
>sp|O07220|Y1812_MYCTU NADH dehydrogenase-like protein Rv1812c/MT1860 OS=Mycobacterium
tuberculosis GN=Rv1812c PE=2 SV=1
Length = 400
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 83 LSDSRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
LS R P+ VL P+G V ++ + D + RV T G+ SY+ +++ASG
Sbjct: 56 LSACRIPLGDVLGPAGVAHVTAEVTAIDADGRRVTTSTGASYSYDRLVLASG 107
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 582 LSDSRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
LS R P+ VL P+G V ++ + D + RV T G+ SY+ +++ASG
Sbjct: 56 LSACRIPLGDVLGPAGVAHVTAEVTAIDADGRRVTTSTGASYSYDRLVLASG 107
>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2
SV=1
Length = 373
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 21/117 (17%)
Query: 30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP 89
S ++LVVGGGAAG MAA+ ++ ++ ++ H + ++ L R+
Sbjct: 141 SQRILVVGGGAAGVEMAAEIKTEYPGKEIILI-----HSKTAL-----ADVELLPSVRQV 190
Query: 90 MKSV-LPSGATWVKDKIVSFDPENNR---------VRTQAGSEISYEYMIVASGIQM 136
+K + L G + + VS D EN R VRT+ G+E+ + +++ +GI++
Sbjct: 191 VKEILLRKGVRLLLSEKVS-DIENLRPNQFQKDMVVRTEKGTEVVVDMVVLCTGIKI 246
>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum
GN=aifB PE=3 SV=1
Length = 387
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDS 86
+S ++L++GGG GC +A + SK V++VE ++ G ++ + +
Sbjct: 2 TSEKKRVLIIGGGYGGCEVAKQLDSKFN---VTVVERKQTFFHSV------GSVRAVVEP 52
Query: 87 RRPMKSVLP-----SGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
K +P ++ ++ P + + G E++++Y+++A+G
Sbjct: 53 ELVKKIYIPYDKLLKNGKFIFGTVIEISP--TLAKLEDGQELTFDYLVIATG 102
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 330 SRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTA 369
S ++++SG + V+ + Q Y+NVFAIGDC++ KTA
Sbjct: 264 SNVINESGQLKVN-LSCQVQGYNNVFAIGDCTDFDEFKTA 302
>sp|P52923|AIF1_YEAST Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AIF1 PE=1 SV=1
Length = 378
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 270 EKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP-VPELA 328
+ + D L G+ ++ +D + K +F E ++ + +++ + P VP +
Sbjct: 193 KNVTDYLSKNGITLYLNTVGASLDTSPKR-IFLGEGSSKYIDADLIYRGVGISPNVPVNS 251
Query: 329 TSRLVDQSGYVNVDKA-TLQHVKYSNVFAIGDCSNL 363
S L D+ G++ V+K ++ V+ NVFAIGD +N
Sbjct: 252 ISDLCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTNF 287
>sp|A2BZ61|MNMG_PROM5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain MIT 9515) GN=mnmG
PE=3 SV=1
Length = 654
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
SS+ S ++V+GGG AGC AA T+KLG D +QP +GG K
Sbjct: 6 SSNESFDVIVIGGGHAGCE-AAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAK 60
>sp|Q9BRQ8|AIFM2_HUMAN Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=1 SV=1
Length = 373
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 330 SRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKN 389
SRL SG + V++ LQ +SNV+AIGDC+++ T K A + N+ +K
Sbjct: 258 SRLAS-SGALRVNE-HLQVEGHSNVYAIGDCADVRTPKMAYLAGLHANIAVANIVNSVKQ 315
Query: 390 RAL 392
R L
Sbjct: 316 RPL 318
>sp|A2BTQ6|MNMG_PROMS tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain AS9601) GN=mnmG PE=3
SV=1
Length = 655
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 25 SSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
+S++ S ++V+GGG AGC AA T+KLG D +QP +GG K
Sbjct: 5 NSTNESFDVIVIGGGHAGCE-AAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAK 60
>sp|Q55694|MNMG_SYNY3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mnmG
PE=3 SV=1
Length = 635
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 461 PGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 518
P F+ F + VVG G AGC AA T+RLG + + D +QP +GG K
Sbjct: 6 PVEFQDQFDVIVVGAGHAGCE-AALATARLGCRTLLLTLNLDRIAWQPCNPAVGGPAK 62
>sp|A3PFG3|MNMG_PROM0 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain MIT 9301) GN=mnmG
PE=3 SV=1
Length = 660
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
S++ S ++V+GGG AGC AA T+KLG D +QP +GG K
Sbjct: 6 STNESFDVIVIGGGHAGCE-AAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAK 60
>sp|A2C5E1|MNMG_PROM1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain NATL1A) GN=mnmG PE=3
SV=1
Length = 656
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
SS+ S ++VVGGG AGC AA +++LG D +QP +GG K
Sbjct: 6 SSNESFDVIVVGGGHAGCE-AALTSARLGLNTALFTLNLDRIAWQPCNPAVGGPAK 60
>sp|Q46IB4|MNMG_PROMT tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain NATL2A) GN=mnmG PE=3
SV=1
Length = 656
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
SS+ S ++VVGGG AGC AA +++LG D +QP +GG K
Sbjct: 6 SSNESFDVIVVGGGHAGCE-AALTSARLGLNTALFTLNLDRIAWQPCNPAVGGPAK 60
>sp|P55586|Y4OA_RHISN Uncharacterized protein y4oA OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02280 PE=4 SV=1
Length = 593
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 9 LKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
++ Y L S S P++S+ S K+++VG GA G S AA ++ G GQ++I++
Sbjct: 313 VRGYRLSSDMLSRLPVASALKSKKVVLVGCGAIG-SFAAVELARSGVGQLTIID 365
>sp|A1JS25|HUTI_YERE8 Imidazolonepropionase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=hutI PE=3 SV=1
Length = 406
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 592 VLPSGATWVKD-KIVSFDPENNRVRTQAGSEISYEYMIVASG-IQMYYDRVKGGTTSLED 649
++P GA V D KIV P N R A E+ Y ++ G I + V GG S E
Sbjct: 26 LIPQGAMAVTDGKIVWIGPYNELPRLSASREVIYSSGLITPGLIDCHTHLVFGGDRSAEF 85
Query: 650 RGKMRGVS 657
++ GVS
Sbjct: 86 EQRLNGVS 93
>sp|Q7TU19|MNMG_PROMP tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=mnmG PE=3 SV=1
Length = 654
Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
S + S ++V+GGG AGC AA T+KLG D +QP +GG K
Sbjct: 6 SPNESFDIIVIGGGHAGCE-AAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAK 60
>sp|Q7V9J7|MNMG_PROMA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=mnmG PE=3 SV=1
Length = 667
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 22 SPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
S S++ ++VVGGG AGC AA T+KLG D +QP +GG K
Sbjct: 2 SNYSNAKEKFDVIVVGGGHAGCE-AAIATAKLGLSTALFTLNLDRIAWQPCNPAVGGPAK 60
>sp|A8G7I0|MNMG_PROM2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain MIT 9215) GN=mnmG
PE=3 SV=1
Length = 655
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
+++ S ++V+GGG AGC AA T+KLG D +QP +GG K
Sbjct: 6 ATNESFDIIVIGGGHAGCE-AAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAK 60
>sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana
GN=NDB3 PE=2 SV=1
Length = 580
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/137 (17%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 12 YNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQP 71
Y+ + S+S + + + + K++++G G AG S + +V ++ P + + P
Sbjct: 37 YSEANPSYSNNGVETKTRKRKVVLLGTGWAGASFLKTLNN--SSYEVQVISPRNYFAFTP 94
Query: 72 MFTLIGGGMKKLSDSRRPMKSVLPSG---ATWVKDKIVSFDPENNRV--RTQAGS----- 121
+ + G + P++++ ++++ + DP + +V R++ G
Sbjct: 95 LLPSVTCGTVEARSVVEPIRNIARKQNVEMSFLEAECFKIDPGSKKVYCRSKQGVNSKGK 154
Query: 122 ---EISYEYMIVASGIQ 135
++ Y+Y+++A+G Q
Sbjct: 155 KEFDVDYDYLVIATGAQ 171
>sp|O34324|DLDH3_BACSU Dihydrolipoyl dehydrogenase OS=Bacillus subtilis (strain 168)
GN=acoL PE=3 SV=1
Length = 458
Score = 33.1 bits (74), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 20 STSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
S LS S L++VGGG GC A F ++LG QV+I+E D
Sbjct: 160 SKDALSLSEIPSSLVIVGGGVIGCEYAGLF-ARLGS-QVTIIETAD 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,964,458
Number of Sequences: 539616
Number of extensions: 12019067
Number of successful extensions: 26877
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 26777
Number of HSP's gapped (non-prelim): 99
length of query: 706
length of database: 191,569,459
effective HSP length: 125
effective length of query: 581
effective length of database: 124,117,459
effective search space: 72112243679
effective search space used: 72112243679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)