RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8791
(706 letters)
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 123 bits (310), Expect = 3e-30
Identities = 78/408 (19%), Positives = 133/408 (32%), Gaps = 84/408 (20%)
Query: 34 LVVGGGAAGCSMAAKFTSKLGKGQVSIV--EPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
++VGGGAAG S A L +++++ EP +Y P+ +GGG+ L D R P
Sbjct: 2 VIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP- 60
Query: 92 SVLPSGATWVK----DKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSAL 147
+ AT + ++ S DPEN V G EI Y+Y+++A+G +
Sbjct: 61 --RFNRATGIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGAR------------ 105
Query: 148 INALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRN 207
P +++ + +
Sbjct: 106 ----------------------------------------PRPPPISDWEGVVTLRLRED 125
Query: 208 LQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPF 267
+ + G L E K K+ G L
Sbjct: 126 AEALKGG-----AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEV 180
Query: 268 YAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKT--ERLPYAIMHVTPPMGPVP 325
AE++ ++L GV++ G +V ++ V + E + ++ + P P
Sbjct: 181 -AEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV 239
Query: 326 ELATS---RLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA---GQCKVV 379
LA L G V VD+ K +V+A GD + +P ++T V
Sbjct: 240 VLANDALPGLALAGGAVLVDERGGTS-KDPDVYAAGDVAEIPAAETGKGGRIALWAIAVA 298
Query: 380 YDNLSAVMKNRALPHE-------YNGYTSCPLVTGYSKCVMAEFDYTL 420
++A AL + C TG ++ D L
Sbjct: 299 AGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVL 346
Score = 49.5 bits (118), Expect = 3e-06
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVK----DKIVSFDPENNRV 614
EP +Y P+ +GGG+ L D R P + AT + ++ S DPEN V
Sbjct: 30 GREPKYSYYRCPLSLYVGGGIASLEDLRYPP---RFNRATGIDVRTGTEVTSIDPENKVV 86
Query: 615 RTQAGSEISYEYMIVASGIQ 634
G EI Y+Y+++A+G +
Sbjct: 87 LLDDG-EIEYDYLVLATGAR 105
Score = 46.4 bits (110), Expect = 4e-05
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIV--EPTDDHYYQPMFTLIGGGMKKLSDSRRP 526
+VGGGAAG S A L +++++ EP +Y P+ +GGG+ L D R P
Sbjct: 3 IVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYP 59
Score = 33.3 bits (76), Expect = 0.43
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
++VVG G G A K GK +V+++E D
Sbjct: 137 KDVVVVGAGPIGLEAAEAAA-KRGK-KVTLIEAAD 169
Score = 29.1 bits (65), Expect = 8.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
VVG G G A R GK +V+++E D
Sbjct: 141 VVGAGPIGLEAAEAAAKR-GK-KVTLIEAAD 169
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 69.6 bits (171), Expect = 1e-12
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
+++++GGG G S A + KL ++++V+ D H + P+ + G S+ P++
Sbjct: 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLR 64
Query: 92 SVL--PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKG 143
++L +V+ ++ D + +V EISY+Y++VA G + Y + G
Sbjct: 65 ALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPG 118
Score = 54.6 bits (132), Expect = 1e-07
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (10%)
Query: 265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIM----HVTPP 320
P ++ L GV+V G + E+ + V +D E +P + V
Sbjct: 208 PPKLSKYAERALEKLGVEVLLGTPVTEVT---PDGV-TLKDGEEEIPADTVVWAAGVRAS 263
Query: 321 MGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA----GQC 376
P+ + + D+ G + V+ TLQ + ++FA GDC+ + + A Q
Sbjct: 264 --PLLKDLSGLETDRRGRLVVNP-TLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQG 320
Query: 377 KVVYDNLSAVMKNRAL-PHEYNGYTSC 402
+ N+ A +K + L P +Y +
Sbjct: 321 EYAAKNIKARLKGKPLKPFKYKDKGTL 347
Score = 50.7 bits (122), Expect = 2e-06
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 560 VEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL--PSGATWVKDKIVSFDPENNRVRTQ 617
V+ D H + P+ + G S+ P++++L +V+ ++ D + +V
Sbjct: 34 VDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLA 93
Query: 618 AGSEISYEYMIVASGIQMYYDRVKG------GTTSLEDRGKMR 654
EISY+Y++VA G + Y + G G +LED ++R
Sbjct: 94 DLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLR 136
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 69.2 bits (170), Expect = 2e-12
Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 74/374 (19%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQ-VSIVEPTDDHYYQPMFTLIGGGMKKLSDSR---R 88
L+++GGG + ++ K G V+++ P+ Y M + G L + R R
Sbjct: 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLR 61
Query: 89 PMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALI 148
+ +GA +V + DP+ +V +SY+ + + G V+G + L
Sbjct: 62 RL--ARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLA 119
Query: 149 NALGHCDLVRSFVTFPLFFPRRTLD-FLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRN 207
P + ++ FL R L E+ D P
Sbjct: 120 ------------------VPVKPIENFLARWEALLESADAPP------------------ 143
Query: 208 LQHFQSGPVLYTFPATPIKCGGAPMKAV-LIGDEYLRKH-KKRD-AAKLTYCTGMGVLFP 264
+ G V + LR+ KR ++T G +L
Sbjct: 144 -------------GTKRLAVVGGGAAGVEIALA--LRRRLPKRGLRGQVTLIAGASLLPG 188
Query: 265 -SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGP 323
+ +L RG++VH+G + A+ ++ +T AI+ T P
Sbjct: 189 FPAKVRRLVLRLLARRGIEVHEGAPVTRG---PDGALILADGRTLP-ADAILWATGARAP 244
Query: 324 VPELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAA----AVAGQCKV 378
P LA S L +D+ G++ VD TLQ + + +VFA GDC+ + + AV Q +
Sbjct: 245 -PWLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVR-QAPI 301
Query: 379 VYDNLSAVMKNRAL 392
+ NL A ++ + L
Sbjct: 302 LAANLRASLRGQPL 315
Score = 39.2 bits (92), Expect = 0.006
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 558 SIVEPTDDHYYQPMFTLIGGGMKKLSDSR---RPMKSVLPSGATWVKDKIVSFDPENNRV 614
+++ P+ Y M + G L + R R + +GA +V + DP+ +V
Sbjct: 29 TLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRL--ARQAGARFVIAEATGIDPDRRKV 86
Query: 615 RTQAGSEISY 624
+SY
Sbjct: 87 LLANRPPLSY 96
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 48.1 bits (115), Expect = 4e-06
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 37/140 (26%)
Query: 34 LVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH------------YYQPMFTLIGGGMK 81
LVVG GAAG + A LG V IV+ +QP F GM
Sbjct: 1 LVVGAGAAGMAFADHL-LDLGDAPVIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFGMP 59
Query: 82 KL--------------------SDSRRPMKSVLPSGATWVK--DKIVSFDPENNR--VRT 117
L ++ ++ + ++ ++ + + + R VR
Sbjct: 60 DLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRFVVRL 119
Query: 118 QAGSEISYEYMIVASGIQMY 137
G + +Y++ A+G
Sbjct: 120 TDGETVRADYVVDATGAFSV 139
Score = 40.4 bits (95), Expect = 0.001
Identities = 35/181 (19%), Positives = 52/181 (28%), Gaps = 59/181 (32%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH------------YYQPMFTLIGGGMKK 519
VVG GAAG + A LG V IV+ +QP F GM
Sbjct: 2 VVGAGAAGMAFADHL-LDLGDAPVIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFGMPD 60
Query: 520 LSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILILHSIVEPTDD---HYYQPMFTLIG 576
L+ +S D+S + + Y + +
Sbjct: 61 LN--------------------ALSIDTSPKWDGKAEL----ASGAEIAAYLEDL----- 91
Query: 577 GGMKKLSDSRRPMKSVLPSGA-TWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQM 635
++ LP T V V D VR G + +Y++ A+G
Sbjct: 92 --ARRY---------GLPIRLSTRVTA--VERDGGRFVVRLTDGETVRADYVVDATGAFS 138
Query: 636 Y 636
Sbjct: 139 V 139
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 41.9 bits (99), Expect = 0.001
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIV----EPTDDHYYQPMFTLIGGGMKKLSDSR 87
KL+++G G AG + + I EP +Y + + + + G K D
Sbjct: 5 KLVIIGNGMAGHRTIEELL-ESAPDLYDITVFGEEP-RPNYNRILLSSVLAGEKTAED-- 60
Query: 88 RPMKSVLPSGATW---------VKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
+ + W +K++ D N V T AG +SY+ +I+A+G
Sbjct: 61 -----ISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATG 110
Score = 36.1 bits (84), Expect = 0.077
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 602 DKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
+K++ D N V T AG +SY+ +I+A+G
Sbjct: 80 EKVIQIDRANKVVTTDAGRTVSYDKLIIATG 110
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ----PMFTLIGG--GMKKLSD 85
++++GGG AG + AA ++LG +V+++E Y P L+ G++
Sbjct: 1 DVVIIGGGPAGLA-AAIRLARLG-LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIG 58
Query: 86 SRRPMKSVLPSGATW-VKDKIVSFDPENNRVR---TQAGSEISYEYMIVASG 133
P + G + ++V D V + G EI+Y+ +I+A+G
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110
Score = 34.6 bits (80), Expect = 0.14
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
+++VVGGG G +AA KLGK +V++VE D
Sbjct: 144 RVVVVGGGYIGLELAAALA-KLGK-EVTVVERRD 175
Score = 33.9 bits (78), Expect = 0.25
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 454 LRGYWNGPGVF---RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
LRG + + + VVGGG G +AA +LGK +V++VE D
Sbjct: 126 LRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALA-KLGK-EVTVVERRD 175
Score = 29.3 bits (66), Expect = 7.1
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 333 VDQSGYVNVDKATLQHVKYSNVFAIGDC 360
+D+ GY+ VD+ L+ ++A GD
Sbjct: 253 LDERGYIVVDE-YLR-TSVPGIYAAGDV 278
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 37.2 bits (87), Expect = 0.002
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
+++VVGGG G A+ KLG +V++VE D
Sbjct: 1 RVVVVGGGYIGLEFASALA-KLGS-KVTVVERRD 32
Score = 35.3 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
+ VVGGG G A+ +LG +V++VE D
Sbjct: 1 RVVVVGGGYIGLEFASALA-KLGS-KVTVVERRD 32
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 38.2 bits (89), Expect = 0.014
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 280 GVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP---ELATSRLVDQS 336
GVD+ A+ E+ +KE V K E +P ++ + +GP P +L +
Sbjct: 242 GVDIRTKTAVKEV--LDKEVVLKD---GEVIPTGLVVWSTGVGPGPLTKQLKVDK--TSR 294
Query: 337 GYVNVDKATLQHVKYSNVFAIGDCSNLPTSK--TAAAVAGQ 375
G ++VD L+ NVFA+GDC+ T A VA Q
Sbjct: 295 GRISVDDH-LRVKPIPNVFALGDCAANEERPLPTLAQVASQ 334
Score = 38.2 bits (89), Expect = 0.015
Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGG---MKKLSDSRR 88
++V+G G AG K ++++ P + + P+ G + + + R
Sbjct: 12 NVVVLGTGWAGAYFVRNLDPKKYN--ITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVR 69
Query: 89 PMKSVLPSGATWVKDKIVSFDPENNRVRTQAGS----------EISYEYMIVASGIQMYY 138
P + LP+ +++ + D E RV+ S + Y+ ++VA G +
Sbjct: 70 PALAKLPN--RYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT 127
Query: 139 DRVKG 143
+ G
Sbjct: 128 FNIPG 132
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 36.4 bits (85), Expect = 0.049
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 25/148 (16%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSEDKTERLPYAIMHVTPPMGPVPE 326
++++ L GV + + ++ + + + A++ G P
Sbjct: 217 SKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI---GRKP- 272
Query: 327 LATSRL--------VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKV 378
T L +D G++ VD ++AIGD P A + ++
Sbjct: 273 -NTDGLGLENAGVELDDRGFIKVDD--QMTTNVPGIYAIGDVIGGP--MLAHVAMAEGRI 327
Query: 379 VYDNLSAVMKNRALPHEYNGYTSCPLVT 406
+N++ Y P V
Sbjct: 328 AAENIA------GGKRTPIDYRLIPSVV 349
Score = 32.2 bits (74), Expect = 0.92
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
L +VGGG G A+ F + LG +V++VE D
Sbjct: 175 SLVIVGGGYIGLEFASVF-AALGS-KVTVVERGD 206
Score = 31.4 bits (72), Expect = 1.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
L++VGGG G A+ F + LG +V++VE D
Sbjct: 175 SLVIVGGGYIGLEFASVF-AALGS-KVTVVERGD 206
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 36.3 bits (85), Expect = 0.056
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
HL ++GGG G A F R G +V+++E
Sbjct: 173 HLVIIGGGYIGLEFAQMF-RRFG-SEVTVIE 201
Score = 30.6 bits (70), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
Q + V+G G AG +AA+ + LG +V+++E
Sbjct: 4 QRYDAIVIGAGQAGPPLAARA-AGLG-MKVALIE 35
Score = 30.2 bits (69), Expect = 4.4
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
L+++GGG G A F + G +V+++E
Sbjct: 174 LVIIGGGYIGLEFAQMF-RRFG-SEVTVIE 201
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 35.9 bits (84), Expect = 0.063
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNL 383
+D+ G VD+ T V ++A GD + P AA G ++ +N
Sbjct: 282 LDERGRPVVDEHTQTSV--PGIYAAGDVNGKPPLLHEAADEG--RIAAENA 328
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 35.6 bits (82), Expect = 0.088
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 16 SSSFSTSPLSSSS----HSCKLLVVGGGAAGCSMAAKFTSK 52
+SSFS+S SSSS + +VVGGG AGC +AA +
Sbjct: 37 ASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQN 77
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 34.5 bits (80), Expect = 0.16
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 285 KGKALVE-IDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDK 343
G VE + + N + E + + + AI H P + L +D++GY+ D+
Sbjct: 203 VGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHE-PNTELLKGLLE---LDENGYIVTDE 258
Query: 344 ATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYD 381
V VFA GD + + A C
Sbjct: 259 GMRTSVP--GVFAAGDVRDKGYRQAVTAAGDGCIAALS 294
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the
B protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the
pyridine nucleotide portion of NAD. This model
identifies proteins that cluster as L-aspartate oxidase
(a flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other
NadB but is just one gene away from NadA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 34.8 bits (80), Expect = 0.16
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEP-----TDDHYYQ 70
HSC ++V+G GAAG S A +G+V ++ + Y Q
Sbjct: 1 HSCDVVVIGSGAAGLSAALALA---DQGRVIVLSKAPVTEGNSFYAQ 44
Score = 31.3 bits (71), Expect = 2.2
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEP-----TDDHYYQ 507
+ V+G GAAG S A +G+V ++ + Y Q
Sbjct: 3 CDVVVIGSGAAGLSAALALA---DQGRVIVLSKAPVTEGNSFYAQ 44
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic
proteinases produced by the plasmodium parasite. The
family contains a group of aspartic proteinases
homologous to plasmepsin 5. Plasmepsins are a class of
at least 10 enzymes produced by the plasmodium parasite.
Through their haemoglobin-degrading activity, they are
an important cause of symptoms in malaria sufferers.
This family of enzymes is a potential target for
anti-malarial drugs. Plasmepsins are aspartic acid
proteases, which means their active site contains two
aspartic acid residues. These two aspartic acid residue
act respectively as proton donor and proton acceptor,
catalyzing the hydrolysis of peptide bond in proteins.
Aspartic proteinases are composed of two structurally
similar beta barrel lobes, each lobe contributing an
aspartic acid residue to form a catalytic dyad that acts
to cleave the substrate peptide bond. The catalytic Asp
residues are contained in an Asp-Thr-Gly-Ser/thr motif
in both N- and C-terminal lobes of the enzyme. There
are four types of plasmepsins, closely related but
varying in the specificity of cleavage site. The name
plasmepsin may come from plasmodium (the organism) and
pepsin (a common aspartic acid protease with similar
molecular structure). This family of aspartate proteases
is classified by MEROPS as the peptidase family A1
(pepsin A, clan AA).
Length = 326
Score = 34.3 bits (79), Expect = 0.22
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 505 YYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATW------VKDKIVSFDSSYTFTILILHS 558
YY + L G S + + + ++ SG+T + +KI +F + T
Sbjct: 210 YYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFFPTITIIFENNLK 269
Query: 559 IV-EPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRV 614
I +P+ Y + F GG S S +P +L GA++ K+K + FD +NNR+
Sbjct: 270 IDWKPSSYLYKKESFWCKGGE---KSVSNKP---IL--GASFFKNKQIIFDLDNNRI 318
>gnl|CDD|191699 pfam07203, DUF1412, Protein of unknown function (DUF1412). This
family consists of several Caenorhabditis elegans
proteins of around 70-75 residues in length. The
function of this family is unknown.
Length = 53
Score = 30.6 bits (69), Expect = 0.24
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 18/60 (30%)
Query: 457 YWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGG 516
YWN GV M + GG + LG QV H Y PMF+ + G
Sbjct: 12 YWNSNGVVNNMVSDNMAGG-----------PTSLGWAQVP-------HVYSPMFSPVFGK 53
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 33.8 bits (77), Expect = 0.35
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 334 DQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAG 374
D SG + V+ A +++A GDCS+LP AA AG
Sbjct: 298 DTSGAIVVNPAMETSA--PDIYAAGDCSDLPQFVYVAAAAG 336
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 33.1 bits (76), Expect = 0.55
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAA 47
+ H ++V+GGG AG AA
Sbjct: 2 MTIHEFDVVVIGGGGAGL-RAA 22
>gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase.
Length = 491
Score = 32.7 bits (75), Expect = 0.65
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 20 STSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE--PT 64
++ SS+S + VVG G AG A K +V I+E PT
Sbjct: 16 FSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62
Score = 32.0 bits (73), Expect = 1.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE--PT 501
H+ VVG G AG A K +V I+E PT
Sbjct: 28 HVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 32.2 bits (74), Expect = 0.98
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 472 VVGGGAAGCS--MAAKFTSRLGKGQVSIVEPTD 502
VVGGG AG + +AA RLG +V +VE
Sbjct: 4 VVGGGPAGVAAAIAAA---RLGA-KVLLVERRG 32
Score = 31.8 bits (73), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 33 LLVVGGGAAGCS--MAAKFTSKLGKGQVSIVEPTD 65
++VVGGG AG + +AA +LG +V +VE
Sbjct: 2 VVVVGGGPAGVAAAIAAA---RLGA-KVLLVERRG 32
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 32.0 bits (73), Expect = 1.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 20 STSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
S +S S LL+VGGG GC A+ + S+LG +V+IVE
Sbjct: 160 SKHAMSLPSIPSSLLIVGGGVIGCEFASIY-SRLGT-KVTIVEMAP 203
Score = 30.1 bits (68), Expect = 4.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERL 310
A + + L GV + G AL ++ K+A+F+ E + +
Sbjct: 214 AHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEV 255
Score = 29.7 bits (67), Expect = 5.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 470 LGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
L +VGGG GC A+ + SRLG +V+IVE
Sbjct: 173 LLIVGGGVIGCEFASIY-SRLGT-KVTIVEMAP 203
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 31.5 bits (72), Expect = 1.6
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIV 61
K+++VGGG AG MAA ++ KG + +
Sbjct: 1 KIVIVGGGTAG-WMAAAALARALKGGLDVT 29
Score = 30.0 bits (68), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 470 LGVVGGGAAGCSMAAKFTSRLGKGQVSIV 498
+ +VGGG AG MAA +R KG + +
Sbjct: 2 IVIVGGGTAG-WMAAAALARALKGGLDVT 29
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 31.4 bits (72), Expect = 1.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQ--VSIVEPTD-DHYYQPMF 73
+++VGGG AG ++A S+L G V+++E + P F
Sbjct: 6 VIIVGGGMAGATLALAL-SRLSHGGLPVALIEAFAPESDAHPGF 48
Score = 31.4 bits (72), Expect = 2.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQ--VSIVEPTD-DHYYQPMF 510
+VGGG AG ++A SRL G V+++E + P F
Sbjct: 8 IVGGGMAGATLALAL-SRLSHGGLPVALIEAFAPESDAHPGF 48
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 31.3 bits (71), Expect = 1.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAG 374
V+ G + +D+ V +++A GDC++ P AA AG
Sbjct: 379 VNAQGAIVIDQGMRTSV--PHIYAAGDCTDQPQFVYVAAAAG 418
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 31.1 bits (71), Expect = 2.3
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFT 74
L++VG G AG +A + +V +++ P F
Sbjct: 2 LVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPG----PPFP 39
Score = 30.3 bits (69), Expect = 3.1
Identities = 30/169 (17%), Positives = 49/169 (28%), Gaps = 41/169 (24%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL 531
+VG G AG +A + +V +++ SD + +
Sbjct: 4 IVGAGLAGLLLALRLRQARPGLRVLLIDAGPG--------PPFPNNHTWSDEFEDLGPLA 55
Query: 532 PS-GATWVKDKIVSFDSSYTFTILILHSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 590
P +W V F LIG G ++ S +
Sbjct: 56 PCVEHSW-PGYEVRFPD---------GRR-------------KLIGRGYGRV--SSDRLH 90
Query: 591 SVL-----PSGATWVKDKIVSFDPE--NNRVRTQAGSEISYEYMIVASG 632
L +G + K+ S D E + V + G I +I A G
Sbjct: 91 EELLRRCAENGVIRLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARG 139
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 30.7 bits (70), Expect = 2.4
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
++V+G G AG + AA ++ G +V++VE
Sbjct: 2 VVVIGSGLAGLA-AALEAAEAGL-KVAVVE 29
Score = 29.2 bits (66), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
V+G G AG + AA + G +V++VE
Sbjct: 4 VIGSGLAGLA-AALEAAEAGL-KVAVVE 29
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 30.3 bits (69), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
L V+G G G + + + RLG +V+I+E
Sbjct: 185 KLAVIGAGVIGLELGSVW-RRLG-AEVTILE 213
>gnl|CDD|233280 TIGR01128, holA, DNA polymerase III, delta subunit. DNA polymerase
III delta (holA) and delta prime (holB) subunits are
distinct proteins encoded by separate genes. The delta
prime subunit (holB) exhibits sequence homology to the
tau and gamma subunits (dnaX), but the delta subunit
(holA) does not demonstrate this same homology with
dnaX. The delta, delta prime, gamma, chi and psi
subunits form the gamma complex subassembly of DNA
polymerase III holoenzyme, which couples ATP to assemble
the ring-shaped beta subunit around DNA forming a DNA
sliding clamp [DNA metabolism, DNA replication,
recombination, and repair].
Length = 302
Score = 29.9 bits (68), Expect = 3.9
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 155 DLVRSFVTFPLFFPRRTLDFLRRPSGLQEALD 186
L+ T PLF RR ++ LR P G A
Sbjct: 33 QLLEEAQTLPLFSERRLVE-LRNPEGKPGAKG 63
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 30.3 bits (69), Expect = 4.1
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
L+++GGG G A+ F + LG +V+++E
Sbjct: 172 SLVIIGGGVIGVEFASIF-ASLGS-KVTVIE 200
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 30.1 bits (68), Expect = 4.5
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHY 68
L+V+G G AG ++AAK S GK +V++VE + Y
Sbjct: 6 LIVIGFGKAGKTLAAKLAS-AGK-KVALVEESKAMY 39
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 29.9 bits (68), Expect = 5.6
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD-DHYYQPMFT 511
+VGGG G ++A +R G +V+++E T P F
Sbjct: 4 IVGGGPVGLALALAL-ARSGGLKVALIEATPLPAPADPGFD 43
Score = 29.5 bits (67), Expect = 6.4
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD-DHYYQPMFT 74
+++VGGG G ++A ++ G +V+++E T P F
Sbjct: 2 IVIVGGGPVGLALALAL-ARSGGLKVALIEATPLPAPADPGFD 43
>gnl|CDD|202625 pfam03418, Peptidase_A25, Germination protease.
Length = 354
Score = 29.7 bits (66), Expect = 5.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 81 KKLSDSRRPMKSVLPSGATWVKDKIVSFD 109
+++ + +P KS+LPSG T+ + K ++ D
Sbjct: 248 REMKEQGKPSKSLLPSGMTFGEKKKLTED 276
Score = 29.7 bits (66), Expect = 5.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 518 KKLSDSRRPMKSVLPSGATWVKDKIVSFD 546
+++ + +P KS+LPSG T+ + K ++ D
Sbjct: 248 REMKEQGKPSKSLLPSGMTFGEKKKLTED 276
Score = 29.7 bits (66), Expect = 5.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 580 KKLSDSRRPMKSVLPSGATWVKDKIVSFD 608
+++ + +P KS+LPSG T+ + K ++ D
Sbjct: 248 REMKEQGKPSKSLLPSGMTFGEKKKLTED 276
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 29.7 bits (67), Expect = 5.8
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 13 NLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPM 72
LL+ + S +++VG G +G AAK S+ G + I+E TD
Sbjct: 9 VLLAVHLFAVAAMDAKPSPSVIIVGAGMSGI-SAAKTLSEAGIEDILILEATDR------ 61
Query: 73 FTLIGGGMKKLSDSRRPMKSVLPSGATWV 101
IGG M+K + + ++ GA WV
Sbjct: 62 ---IGGRMRKANFAGVSVE----LGANWV 83
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase.
Length = 573
Score = 29.8 bits (67), Expect = 6.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 103 DKIVSFDPENNRVRTQAGSEIS 124
DK++ D E RV QAG+ +
Sbjct: 149 DKVLEVDKEKKRVTVQAGARVQ 170
Score = 29.8 bits (67), Expect = 6.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 602 DKIVSFDPENNRVRTQAGSEIS 623
DK++ D E RV QAG+ +
Sbjct: 149 DKVLEVDKEKKRVTVQAGARVQ 170
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 29.6 bits (67), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 226 KCGGAPMKAVLIGDEYLRKHKKR 248
K GGAP+ AV++G+ +R
Sbjct: 196 KGGGAPVGAVVVGNRDFIARARR 218
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed
to be uniform in function.
Length = 487
Score = 29.8 bits (67), Expect = 6.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 34 LVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
LVVGGG+AGC +AA+ + V+++E
Sbjct: 4 LVVGGGSAGCVVAARLSEDPSC-TVTVLE 31
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 29.5 bits (67), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 26 SSSHSCKLLVVGGGAAGCSMA 46
S H C +L++G GAAG S+A
Sbjct: 4 SPEHQCDVLIIGSGAAGLSLA 24
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 29.7 bits (67), Expect = 6.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRL-GKGQVSIVEPTDDHYYQPMFTLIGGGM 517
MF + ++GGG +G MAA G +SI EP + G G+
Sbjct: 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN---------FGQGI 43
>gnl|CDD|181515 PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit;
Reviewed.
Length = 249
Score = 29.2 bits (66), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 419 TLKPLETFPV--DQSKERSLMFQMKKQV 444
L+P+ TFPV D +RS MF K+V
Sbjct: 95 RLEPMSTFPVVRDLQVDRSRMFDNLKRV 122
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 29.4 bits (66), Expect = 7.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 25 SSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
S +H+ ++VVG GA G S A + G +V +VE
Sbjct: 3 PSMTHTYDVVVVGSGAGGLSAAV--AAAYGGAKVLVVEKAS 41
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 29.3 bits (66), Expect = 7.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 22 SPLSSSSH---SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
+P +++ C +LV+G GAAG S AA + G +V +VE
Sbjct: 1 TPSAAAYPPDLECDVLVIGSGAAGLS-AAVTAAWHGL-KVIVVE 42
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 29.5 bits (67), Expect = 7.8
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 484 AKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKK 519
A T RL G+V P D YY P FT + G +K
Sbjct: 552 ANSTLRLTYGKVKGYSPRDGVYYPP-FTTLEGIFEK 586
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production
and conversion].
Length = 459
Score = 29.5 bits (66), Expect = 8.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 103 DKIVSFDPENNRVRTQAG 120
++I+ DPE+ QAG
Sbjct: 85 NRILEIDPEDGTATVQAG 102
Score = 29.5 bits (66), Expect = 8.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 602 DKIVSFDPENNRVRTQAG 619
++I+ DPE+ QAG
Sbjct: 85 NRILEIDPEDGTATVQAG 102
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 29.3 bits (66), Expect = 8.0
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 27 SSHSCKLLVVGGGAAGCSMAA 47
+LV+GGG AG MAA
Sbjct: 6 QEVETDILVIGGGTAG-PMAA 25
>gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function. The function
of the plant proteins constituting this family is
unknown.
Length = 387
Score = 29.1 bits (66), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 481 SMAAKFTSRLGKGQVSIVEPTDDHYYQPMF 510
AKF +RL +G +V DD Y +F
Sbjct: 319 EEVAKFFNRLCRG---VVFDVDDSYLSGVF 345
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 29.1 bits (66), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
++++GGG AG MAA +K G+ +V +++
Sbjct: 4 FDVIIIGGGPAGL-MAAISAAKAGR-RVLLID 33
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 29.1 bits (66), Expect = 9.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
++GGGAAG MAA +R G V ++E
Sbjct: 2 IIGGGAAGL-MAAITAAREGL-SVLLLEKNK 30
>gnl|CDD|235367 PRK05222, PRK05222,
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase; Provisional.
Length = 758
Score = 29.3 bits (67), Expect = 9.8
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 676 SPEIRAKAYDLTKRK---------MKKE-AQWIRFQEKL 704
+ EIR K + +++E A+ IR QE+L
Sbjct: 439 TTEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQEEL 477
>gnl|CDD|222296 pfam13660, DUF4147, Domain of unknown function (DUF4147). This
domain is frequently found at the N-terminus of
proteins carrying the glycerate kinase-like domain
MOFRL, pfam05161.
Length = 227
Score = 28.6 bits (65), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLG 54
+++VVG G A +MAA LG
Sbjct: 36 RIVVVGAGKAAAAMAAAAEEALG 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,942,778
Number of extensions: 3543448
Number of successful extensions: 3232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3215
Number of HSP's successfully gapped: 100
Length of query: 706
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 602
Effective length of database: 6,324,786
Effective search space: 3807521172
Effective search space used: 3807521172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)