RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8791
(706 letters)
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 362 bits (932), Expect = e-119
Identities = 78/439 (17%), Positives = 151/439 (34%), Gaps = 54/439 (12%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
K++VVGGG G + A +V+++EP D+Y + + GG +KL +
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63
Query: 92 SVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINAL 151
+ G V D DP+ V+T G+E Y+ +VA GI++ YD+++G
Sbjct: 64 GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEG-------- 115
Query: 152 GHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQHF 211
E + + + L+
Sbjct: 116 -----------------------------YSEEAAAK--LPHAWKAGEQTAILRKQLEDM 144
Query: 212 QSGP-VLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAE 270
G V+ PA P +C P + YL+ HK K+ +++
Sbjct: 145 ADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMS--KVIILDSSQTFSKQSQFSK 202
Query: 271 KIHDI----LIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPE 326
+ ++ H G + + E + ++ + ++++ PP
Sbjct: 203 GWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAF-GDEFKADVINLIPPQRAGKI 261
Query: 327 LATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSN-LPTSKTAAAVAGQCKVVYDNLSA 385
+ L + +G+ VD T + + + IGD S P K+ + Q KV +
Sbjct: 262 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVV 321
Query: 386 VMKNRA-LPHEYNGYTSCPLVTGYSKCVMAEFDY--TLKPLETFPVDQ--SKERSLMFQM 440
++K Y L Y V A + +E+ P + + + +
Sbjct: 322 LLKGEEPGTPSYLNTCYSILAPAYGISVAAIYRPNADGSAIESVPDSGGVTPVDAPDWVL 381
Query: 441 KKQVMPFLYW-NLMLRGYW 458
+++V W N ++ +
Sbjct: 382 EREVQYAYSWYNNIVHDTF 400
Score = 129 bits (327), Expect = 1e-32
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQA 618
++EP D+Y + + GG +KL + + G V D DP+ V+T
Sbjct: 32 LIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAG 91
Query: 619 GSEISYEYMIVASGIQMYYDRVKGGTTSLEDRG 651
G+E Y+ +VA GI++ YD+++G + +
Sbjct: 92 GAEFGYDRCVVAPGIELIYDKIEGYSEEAAAKL 124
Score = 107 bits (269), Expect = 3e-25
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL 531
VVGGG G + A +V+++EP D+Y + + GG +KL + +
Sbjct: 7 VVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLR 66
Query: 532 PSGATWVKDKIVSFD 546
G V D D
Sbjct: 67 AHGIQVVHDSATGID 81
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 359 bits (922), Expect = e-117
Identities = 72/461 (15%), Positives = 159/461 (34%), Gaps = 77/461 (16%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
++V+GGG G + A + + +++++ + P F + G +K D P+
Sbjct: 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLA 63
Query: 92 SVLPS-GATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALINA 150
+LP ++ +K S DP+ N V TQ+G +I Y+Y+++A+G ++ +
Sbjct: 64 PLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGA---------- 113
Query: 151 LGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQH 210
G +E ++ + ++ +T + LQ
Sbjct: 114 ----------------------------EGQEE-------NSTSICTAEHALETQKKLQE 138
Query: 211 FQSGPVLYTFPATP-IKCGGAPMKAVLIGDEYLRKHKKRDAAKLTYCTGMGVL-----FP 264
+ P A P + C G + L+ L+K R +T+ T L
Sbjct: 139 LYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGG 198
Query: 265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED-KTERLPYAIMHVTPPMGP 323
+ D+ R +D A+ I+ + +++ + T +P P
Sbjct: 199 IGASKRLVEDLFAERNIDWIANVAVKAIE--PDKVIYEDLNGNTHEVPAKFTMFMPSFQG 256
Query: 324 VPELATS--RLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP----------TSKTAAA 371
+A++ ++ + + + + Q+ Y N+F +G + +P KT
Sbjct: 257 PEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMM 316
Query: 372 VAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLETFPVDQS 431
+ V N+ ++N + C G + P E
Sbjct: 317 IEQMAMAVAHNIVNDIRNNPDKYAPRLSAICIADFGEDAGFFFAD-PVIPPRERVITKMG 375
Query: 432 K---------ERSLMFQMKKQVMPFLYWNLMLRGYWNGPGV 463
K E+ +++++ + + +L + +
Sbjct: 376 KWAHYFKTAFEKYFLWKVRNGNIAPSFEEKVLEIFLKVHPI 416
Score = 115 bits (289), Expect = 1e-27
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQ 617
++ + P F + G +K D P+ +LP ++ +K S DP+ N V TQ
Sbjct: 32 LISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQ 91
Query: 618 AGSEISYEYMIVASGIQMYYDR--VKGGTTSL 647
+G +I Y+Y+++A+G ++ + + +TS+
Sbjct: 92 SGKKIEYDYLVIATGPKLVFGAEGQEENSTSI 123
Score = 98.6 bits (246), Expect = 4e-22
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRP 526
H+ V+GGG G + A + + +++++ + P F + G +K D P
Sbjct: 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVP 61
Query: 527 MKSVLPS-GATWVKDKIVSFD 546
+ +LP ++ +K S D
Sbjct: 62 LAPLLPKFNIEFINEKAESID 82
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 354 bits (909), Expect = e-116
Identities = 77/456 (16%), Positives = 149/456 (32%), Gaps = 77/456 (16%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM 90
K+LV+GG + A +G V ++ + Y++P + G++ + + + +
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDL 62
Query: 91 KSVLPS-GATWVKDKIVSFDPENNRVRTQ----AGSEISYEYMIVASGIQMYYDRVKGPS 145
LP G + + + D +++ V + +E Y+Y+IV G + + VKG
Sbjct: 63 SEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG-- 120
Query: 146 ALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTL 205
+ + P++ K
Sbjct: 121 -----------------------------------WDK-------YGYSVCEPEFATKLR 138
Query: 206 RNLQHFQSGPVLYT------------------FPATPIKCGGAPMKAVLIGDEYLRKHKK 247
L+ FQ G + P C G + L+ Y +K
Sbjct: 139 EKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGM 198
Query: 248 RDAAKLTYCTGMGVLFP-SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDK 306
D +T + L SP + + I G+ + + EI E V +
Sbjct: 199 LDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIR--EHEIVDEK--- 253
Query: 307 TERLPYAIMHVTPPMGPVPELATSR--LVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP 364
+P I + PP P L S LVD G++ D + +KY NV+A+GD +++
Sbjct: 254 GNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDL-NMVSIKYDNVYAVGDANSMT 312
Query: 365 TSKTAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVTGYSKCVMAEFDYTLKPLE 424
K ++ +L+ + +Y C Y ++ D T
Sbjct: 313 VPKLGYLAVMTGRIAAQHLANRLGVPTKVDKYYPTIVCVADNPYEGYAVSVKDDTWYGGT 372
Query: 425 TFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNG 460
D + L ++ + + ++ L +
Sbjct: 373 VSIADPAAVNHLKKELFTKYYMWTKGDMALEKFLAS 408
Score = 107 bits (270), Expect = 3e-25
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPS-GATWVKDKIVSFDPENNRVRTQ 617
++ + Y++P + G++ + + + + LP G + + + D +++ V
Sbjct: 32 VINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYT 91
Query: 618 ----AGSEISYEYMIVASGIQMYYDRVKG 642
+ +E Y+Y+IV G + + VKG
Sbjct: 92 KPDGSMAEEEYDYVIVGIGAHLATELVKG 120
Score = 90.2 bits (224), Expect = 2e-19
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRR 525
M + V+GG + A +G V ++ + Y++P + G++ + + +
Sbjct: 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKV 60
Query: 526 PMKSVLPS-GATWVKDKIVSFD 546
+ LP G + + + D
Sbjct: 61 DLSEALPEKGIQFQEGTVEKID 82
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 321 bits (825), Expect = e-103
Identities = 72/464 (15%), Positives = 141/464 (30%), Gaps = 73/464 (15%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM 90
++++G G G A + LG G +V+++ D + P +G G K+ D P+
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65
Query: 91 KSVL-PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALIN 149
+ + G ++ D E + G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 66 RHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPG------ 119
Query: 150 ALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVSTNYSPQYVEKTLRNLQ 209
D + V + + + E+ Q
Sbjct: 120 -----------------------------------SDPHEGPVQSICTVDHAERAFAEYQ 144
Query: 210 HFQSGP-VLYTFPATPIKCGGAPMKAVLIGDEYLRKHKKRD-AAKLTYCTGMGVL----- 262
P + C G + +I L+K RD T+ T +
Sbjct: 145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGI 204
Query: 263 FPSPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED----KTERLPYAIMHVT 318
+ L G++ + + +++ E K LP +
Sbjct: 205 QGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMI 264
Query: 319 PPMGPVPELA-TSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPT----------SK 367
P VP +A L + G+V VD+ + KY+N+FA G +P K
Sbjct: 265 PAFKGVPAVAGVEGLCNPGGFVLVDE-HQRSKKYANIFAAGIAIAIPPVETTPVPTGAPK 323
Query: 368 TAAAVAGQCKVVYDNLSAVMKNRALPHEYNGYTSCPLVT-GYSKCVMAEFDYTLKPLETF 426
T + N+ A ++ R + + G
Sbjct: 324 TGYMIESMVSAAVHNIKADLEGRKGEQTMGTWNAVAFADMGDRGAAFIALPQLKPRKVDV 383
Query: 427 PVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWNGPGVFRQMFHL 470
+ K + M G + P + +F +
Sbjct: 384 FA-----YGRWVHLAKVAFEKYFIRKMKMG-VSEPFYEKVLFKM 421
Score = 115 bits (291), Expect = 7e-28
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 559 IVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL-PSGATWVKDKIVSFDPENNRVRTQ 617
++ D + P +G G K+ D P++ + G ++ D E +
Sbjct: 35 LISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLA 94
Query: 618 AGSEISYEYMIVASGIQMYYDRVKG 642
G+ + Y+Y+++A+G ++ ++ V G
Sbjct: 95 DGNTVHYDYLMIATGPKLAFENVPG 119
Score = 93.3 bits (232), Expect = 3e-20
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSV 530
++G G G A + LG G +V+++ D + P +G G K+ D P++
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY 68
Query: 531 L-PSGATWVKDKIVSFD 546
+ G ++ D
Sbjct: 69 VERKGIHFIAQSAEQID 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 6e-13
Identities = 91/486 (18%), Positives = 151/486 (31%), Gaps = 160/486 (32%)
Query: 9 LKSYNLLSSSFSTSPLSSSSHSCKLL-VVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD-- 65
+K+Y + + + P S+S L VG G A + A F G GQ + + +
Sbjct: 123 IKNY-ITARIMAKRPFDKKSNS-ALFRAVGEGNA--QLVAIF----G-GQGNTDDYFEEL 173
Query: 66 -DHY--YQPM----FTLIGGGMKKLSDSRRPMKSVLPSG---ATWVKDKI---------- 105
D Y Y + + +L + + V G W+++
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 106 --VSFDPENNRVRTQAGSEISYEYMIVA--SGIQM--YYDRVKG--------PSALINAL 151
+S P Q Y++ A G +KG +A+ A
Sbjct: 234 IPISC-PLI--GVIQLAH-----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 152 GHC-----DLVRSFVTFPLF---------FPRRTLDFLRRPSGLQEALDQPDSGVST--- 194
VR +T LF +P +L PS L+++L+ + GV +
Sbjct: 286 TDSWESFFVSVRKAITV-LFFIGVRCYEAYPNTSL----PPSILEDSLEN-NEGVPSPML 339
Query: 195 ---NYSPQYVEKTLRNL-QHFQSGPVLYTFPATPIK---------CGGAPMKAVLIG-DE 240
N + + V+ + H +G + I G P L G +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVE------ISLVNGAKNLVVSGPP--QSLYGLNL 391
Query: 241 YLRKHK---KRDAAKLTYC-----TGMGVLFP--SPFYAEKIHDILIGRGVDVHKGKALV 290
LRK K D +++ + L P SPF H L+ D L+
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PVASPF-----HSHLLVPASD------LI 439
Query: 291 EIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPV------------PELATSRLVDQ--S 336
DL F ++D + I PV + R+VD
Sbjct: 440 NKDLVKNNVSFNAKD----I--QI--------PVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 337 GYVNVDKATLQHVKYSNV--FAIGDCSNLPTSKTAAAVAGQ-CKVVYDNLSAVMKNRALP 393
V + T K +++ F G S L T G +V+ + N
Sbjct: 486 LPVKWETTT--QFKATHILDFGPGGASGL-GVLTHRNKDGTGVRVIV--AGTLDINPD-- 538
Query: 394 HEYNGY 399
+Y G+
Sbjct: 539 DDY-GF 543
Score = 41.6 bits (97), Expect = 0.001
Identities = 74/480 (15%), Positives = 136/480 (28%), Gaps = 136/480 (28%)
Query: 273 HDILIGRGVDVHKGKALV-------EIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP 325
+ L G D+H AL + L + + K+ + P
Sbjct: 93 NCYL--EGNDIH---ALAAKLLQENDTTLVKTKELIKNY-------ITARIMAKR--PFD 138
Query: 326 ELATSRLVDQSGYVNVDKATLQHVKYSNVF----AIGDC----SNL---------PTSKT 368
+ + S L V A L + +F D +L K
Sbjct: 139 KKSNSALFRA---VGEGNAQL----VA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 369 AAAV-------AGQCKVVYD---NLSAVMKN--RALPHEYNGYT--SCPLVTGYSKCVMA 414
+A + V+ N+ ++N +Y SCPL+ +A
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ---LA 247
Query: 415 EFDYTLKPLETFPVD-QSKERSLMFQMKKQVMPFLY-----WNLMLRGYWNGPGVFRQMF 468
+ T K L P + +S + + V W + +F
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV---SVRKAITVLF 304
Query: 469 HLGVVGGGAAG-CSMAAKFTS---RLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSR 524
+GV A S+ +G P+ PM ++ +++ D
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGV-----PS------PMLSISNLTQEQVQDYV 353
Query: 525 RPMKSVLPSGATWVKDKI-VS-FDSSYTFTI-----------LILHSI-VEPTDDHYYQP 570
S LP+G ++ +S + + + L L D P
Sbjct: 354 NKTNSHLPAG-----KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 571 MFTLIGGGMKKLSDSRR------P-----MKSVLPSGATWVKDKIVSFDPENNRV---RT 616
F+ +KL S R P + + VSF+ ++ ++ T
Sbjct: 409 -FS-----ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 617 QAGSEI-SYEYMIVASGIQM------YYDR-VKGGTTSLEDRGKMRGVSDGFSTVTWEQK 668
GS++ I + ++ + T + D G G + G +T K
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--PGGASGLGVLTHRNK 520
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 2e-08
Identities = 90/610 (14%), Positives = 161/610 (26%), Gaps = 224/610 (36%)
Query: 81 KKLSDSRRPMKSVLPSGATWVKDKIVSFDPENNRVR------TQAGSEISYEYMIVASGI 134
K + D KS+L D I+ + E+ ++ V +
Sbjct: 36 KDVQDM---PKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVL 87
Query: 135 QMYYD--------RVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRP---SGLQE 183
++ Y + PS + R + +F + R L++
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKY----NVSRLQPYLKLRQ 142
Query: 184 AL--DQPDSGVSTNYSPQYVEKTLRNLQHFQSGPVLYTFPATPIKCGGAPMKAVLIGDEY 241
AL +P V + G G K + +
Sbjct: 143 ALLELRPAKNV-----------LI----DGVLG------------SG----KTWVAL-DV 170
Query: 242 LRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEI--DLANK-E 298
+K V F KI + + + + ++E+ L + +
Sbjct: 171 CLSYK--------------VQCKMDF---KIFWLNLKN---CNSPETVLEMLQKLLYQID 210
Query: 299 AVFKSE-DKTERLPYAIMHVTPPMGPVPELATSRLVDQSGYVNVDKATLQHVKYSNVFAI 357
+ S D + + I + L + L+ Y N +
Sbjct: 211 PNWTSRSDHSSNIKLRI-----------HSIQAEL----------RRLLKSKPYENCLLV 249
Query: 358 GDCSNLPTSKTAAAVAGQCKV--------VYDNLSA-VMKNRALPHEYNGYTSCPLVTGY 408
N+ +K A CK+ V D LSA + +L H T + +
Sbjct: 250 LL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 409 SKCV-MAEFDYTLKP--LETFPVDQSKERSLMFQMKKQVMPFLYWNLMLRGYWN------ 459
K + D L L T P S + + W+ W
Sbjct: 308 LKYLDCRPQD--LPREVLTTNPRRLS-----IIAESIRDGLAT-WD-----NWKHVNCDK 354
Query: 460 ------------GPGVFRQMFH-LGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPT----- 501
P +R+MF L V F I
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV-------------FPP-----SAHIPTILLSLIW 396
Query: 502 -DDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKDKIVSFDSSYTFTILI----- 555
D M ++ + KL S++ K+ +S S Y + +
Sbjct: 397 FDVIKSDVM--VV---VNKLHK-----YSLV---EKQPKESTISIPSIY-LELKVKLENE 442
Query: 556 --LH-SIVE---------------PTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPS-- 595
LH SIV+ P D Y+ ++ IG +K + R ++
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNIEHPER--MTLFRMVF 497
Query: 596 -GATWVKDKI 604
+++ KI
Sbjct: 498 LDFRFLEQKI 507
Score = 37.5 bits (86), Expect = 0.017
Identities = 32/286 (11%), Positives = 78/286 (27%), Gaps = 97/286 (33%)
Query: 338 YVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVAGQCKVVYDNLSAVMKNRAL----- 392
+++ + Q+ +Y ++ L + A CK V D +++ +
Sbjct: 6 HMDFETGEHQY-QYKDI--------LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 393 -PHEYNG-YTSCPLVTGYSKCVMAEF-------DYT--LKPLETFPVDQSKERSLMFQMK 441
+G + + ++ +F +Y + P++T S M+ +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIEQ 115
Query: 442 KQVMPFLYWNLMLRGYWNGPGVFRQMF-------------------HLGVVGGGAAGC-- 480
+ + +N VF + V+ G G
Sbjct: 116 RDRL------------YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 481 -SMAA------KFTSRLGKGQV------------SIVEPTDDHYYQPMFTLIGGGMKKLS 521
+A K ++ ++ +++E YQ I S
Sbjct: 164 TWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQ-----IDPNWTSRS 217
Query: 522 DSRRPMKSVLPSGATWVKDKIVSF--DSSYTFTILILHSIVEPTDD 565
D + ++ ++ Y +L+L +
Sbjct: 218 DHSSN----IKLRIHSIQAELRRLLKSKPYENCLLVL-------LN 252
Score = 36.4 bits (83), Expect = 0.045
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 49/163 (30%)
Query: 59 SIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPS---GATWVKDKIVSFDPENNRV 115
++ P D Y+ ++ IG +K + R ++ +++ KI N
Sbjct: 463 DLIPPYLDQYF---YSHIGHHLKNIEHPER--MTLFRMVFLDFRFLEQKIRHDSTAWN-- 515
Query: 116 RTQAGSEIS-------YEYMIVASGIQMYYDRVKGPSALINALGHCDLVRSFVTFPLFFP 168
+GS ++ Y+ I + Y+R L+NA+ F P
Sbjct: 516 --ASGSILNTLQQLKFYKPYICDN--DPKYER------LVNAILD------------FLP 553
Query: 169 RRTLDFLRRPSG--LQEALDQPDSGVSTNYSPQYVEKTLRNLQ 209
+ + + L+ AL D + E+ + +Q
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAI--------FEEAHKQVQ 588
Score = 36.0 bits (82), Expect = 0.047
Identities = 59/352 (16%), Positives = 109/352 (30%), Gaps = 73/352 (20%)
Query: 29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD---DHYYQPMFTLIGGGMKKLSD 85
SCK+L+ F S +S+ + + + + D
Sbjct: 264 LSCKILLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQD 317
Query: 86 SRRPMKSVLP---SG-ATWVKDKIVSFD--PENNRVRTQAGSEISYEYMIVASGIQMYYD 139
R + + P S A ++D + ++D N + E S + A +M+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 140 ------RVKGPSALINALGHCDLVRSFVTFPLFFPRRTLDFLRRPSGLQEALDQPDSGVS 193
P+ L++ + D+++S ++ L + S +++ QP
Sbjct: 378 LSVFPPSAHIPTILLSLI-WFDVIKSD-------VMVVVNKLHKYSLVEK---QPKESTI 426
Query: 194 TNYSPQYVEKTLRNLQHFQSGPVL-------YTFPATPIKCGGAPMKAVLIGDEYLRKH- 245
+ S L ++ L Y P T + L D+Y H
Sbjct: 427 SIPSIY-----LELKVKLENEYALHRSIVDHYNIPKT--FDSDDLIPPYL--DQYFYSHI 477
Query: 246 ----KKRDAAKLTYCTGMGVLFPS-----PFYAEKI-HDILIGRGVDVHKGKALVEIDLA 295
K + + LF F +KI HD + L
Sbjct: 478 GHHLKNIEHPERM------TLFRMVFLDFRFLEQKIRHD---STAWNASGSILNTLQQLK 528
Query: 296 N-KEAVFKSEDKTERLPYAIMHVTPPMGPVPELATSRLVD--QSGYVNVDKA 344
K + ++ K ERL AI+ P + L S+ D + + D+A
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIALMAEDEA 578
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 40.7 bits (96), Expect = 0.001
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 23/114 (20%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIV--EPTDDHYYQPMFT-LIGGGMKKLSDSRR 88
K+L++G G AG S A K ++++ E YY+P +I +
Sbjct: 11 KILILGAGPAGFSAAKAALGK--CDDITMINSEK-YLPYYRPRLNEIIAK--------NK 59
Query: 89 PMKSVLPSGATWVKD---------KIVSFDPENNRVRTQAGSEISYEYMIVASG 133
+ +L W + S DP N V ++G +I YE +I+ASG
Sbjct: 60 SIDDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASG 113
Score = 33.0 bits (76), Expect = 0.34
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 602 DKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
+ S DP N V ++G +I YE +I+ASG
Sbjct: 83 EFATSIDPNNKLVTLKSGEKIKYEKLIIASG 113
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 38.9 bits (91), Expect = 0.007
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 18/108 (16%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPEL- 327
AEK+ D + GV K EI ++ + +
Sbjct: 329 AEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVI 388
Query: 328 -ATSRL--------------VDQSGYVNVDKATLQHVKYSNVFAIGDC 360
A R +D++G V + SNV+AIGD
Sbjct: 389 FAVGREPQLSKVLCETVGVKLDKNGRVVCTD--DEQTTVSNVYAIGDI 434
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 38.3 bits (90), Expect = 0.007
Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIV--EPTDDHYYQPMFTLIGGGMKKLSDSRRP 89
L+++G G AG ++A ++ G+ + ++ + Y +PM + S ++
Sbjct: 6 PLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRS-YSKPMLS------TGFSKNKDA 58
Query: 90 MKSVLPSGATWVKD---------KIVSFDPENNRVRTQAGSEISYEYMIVASG 133
+ + ++ DP + R+ E+ Y +++A G
Sbjct: 59 DGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEE-EVRYRDLVLAWG 110
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 38.6 bits (90), Expect = 0.007
Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 21 TSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIV--EP--------------- 63
P + L++GGG A + A ++ +V IV +P
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWF 61
Query: 64 TDDHYYQPMFTLIGGGMKKLSDSRRPMKSVLPSGATWVKD----------KIVSFDPENN 113
+DD K+ S +P + + + K+V D +N
Sbjct: 62 SDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDN 121
Query: 114 RVRTQAGSEISYEYMIVASG 133
V+ GS+I+YE ++A+G
Sbjct: 122 MVKLNDGSQITYEKCLIATG 141
Score = 32.4 bits (74), Expect = 0.55
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 22/97 (22%)
Query: 235 VLIGDE-------------YLRKHKKRDAAKLTYCTGMG-----VLFPSPFYAEKIHDIL 276
+++ ++ L + G P FY
Sbjct: 40 LIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPH 99
Query: 277 IG-RGVDVHKGKALVEIDLANKEAVFKSEDKTERLPY 312
I GV V GK +V++D+ + ++ Y
Sbjct: 100 IENGGVAVLTGKKVVQLDVRDNMVKLNDG---SQITY 133
Score = 31.2 bits (71), Expect = 1.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 602 DKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
K+V D +N V+ GS+I+YE ++A+G
Sbjct: 111 KKVVQLDVRDNMVKLNDGSQITYEKCLIATG 141
Score = 31.2 bits (71), Expect = 1.4
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 48/126 (38%)
Query: 32 KLLVVGGG------AAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSD 85
+ ++GGG A A+ LG +V + P
Sbjct: 182 SITIIGGGFLGSELACALGRKAR---ALGT-EVIQLFPEK-------------------- 217
Query: 86 SRRPMKSVLPSG-ATWVKDK-------------IVSFDPENNR--VRTQAGSEISYEYMI 129
M +LP + W +K + S + + ++ + G ++ ++++
Sbjct: 218 --GNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIV 275
Query: 130 VASGIQ 135
A G++
Sbjct: 276 AAVGLE 281
Score = 30.9 bits (70), Expect = 1.7
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 21/110 (19%)
Query: 265 SPFYAEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLP-----YAIMHVTP 319
+ + + + GV V + + +++ + + K +D + + A+
Sbjct: 225 PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRK-VETDHIVAAV----- 278
Query: 320 PMGPVP--ELATS---RLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP 364
G P ELA + + G V+ A LQ SN++ GD +
Sbjct: 279 --GLEPNVELAKTGGLEIDSDFGGFRVN-AELQAR--SNIWVAGDAACFY 323
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 37.0 bits (85), Expect = 0.020
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 8 PLKSYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH 67
P N + +T+ S L+VG G AG A+ + G+ +V IV+ H
Sbjct: 7 PSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSV-LAERLASSGQ-RVLIVD-RRPH 63
Query: 68 YYQPMFTLIGGGMK 81
IGG
Sbjct: 64 --------IGGNAY 69
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 36.7 bits (86), Expect = 0.023
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP--E 326
++ L + V H + ++ I+ V ++ ++ I + P
Sbjct: 192 VAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSGIFAL----NLHPQLA 247
Query: 327 LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
++ + + VD NVFAIGDC N P ++T
Sbjct: 248 YLDKKIQRNLDQTIAVDAY--LQTSVPNVFAIGDCISVMNEPVAETF 292
Score = 30.9 bits (71), Expect = 1.6
Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 25/118 (21%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--------YYQPMFTLIGGGMKKL 83
K++++G AG S A K + ++S+++ Y + +L
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY------FNHTINEL 57
Query: 84 SD--SRRP--MKSVLPSGAT-WVKDKIVSFDPENNRVR---TQAGSEISYEYMIVASG 133
+ ++ + ++V+ D EN + + SY+ +I+A+G
Sbjct: 58 HEARYITEEELRR---QKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATG 112
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 36.3 bits (85), Expect = 0.028
Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPY-AIMHVTPPMGPVPEL 327
+ + + + +G++ H A+ ++ + ++D T + +++ G P
Sbjct: 210 SATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAV---GRAPNT 266
Query: 328 ATSRL------VDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
L V +G V D Q+ V+A+GD +
Sbjct: 267 RDLGLEAAGIEVQSNGMVPTDA--YQNTNVPGVYALGDITG 305
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 36.4 bits (85), Expect = 0.033
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP--E 326
A +H+ + V++ + ++ KS + I+ + G P
Sbjct: 231 AAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKS-GSVIQTDMLILAI----GVQPESS 285
Query: 327 LATSRLVD--QSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
LA + G + V++ +++AIGD + T
Sbjct: 286 LAKGAGLALGVRGTIKVNEK--FQTSDPHIYAIGDAIEVKDFVTETET 331
Score = 29.5 bits (67), Expect = 4.4
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 26/120 (21%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--------YYQPMFTLIGGGMKKL 83
K++VVGG A G S+AA+ + ++ +VE + YY IGG + +
Sbjct: 38 KIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYY------IGGVITER 91
Query: 84 SD--SRRP--MKSVLPSGAT-WVKDKIVSFDPENNRVR-----TQAGSEISYEYMIVASG 133
+ M V ++V + E + T +Y+ +I++ G
Sbjct: 92 QKLLVQTVERMSKRF--NLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPG 149
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 35.6 bits (83), Expect = 0.048
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLP--YAIMHVTPPMGPVP- 325
+ + GV++ G + + + E + K+ D E + AI+ + G P
Sbjct: 194 TDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKE-IKSDIAILCI----GFRPN 248
Query: 326 -ELATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
EL ++ + +G + D+ H ++FA GD + PT+ A
Sbjct: 249 TELLKGKVAMLDNGAIITDEY--MHSSNRDIFAAGDSAAVHYNPTNSNA 295
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 35.6 bits (83), Expect = 0.049
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 25/120 (20%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIV--EPTDDHYYQPMFT-LIGGGMKK 82
H K+++VG G G +A + + +V+++ EP +Y +PM + I G
Sbjct: 4 HHHHGSKVVIVGNGPGGFELAKQLSQT---YEVTVIDKEP-VPYYSKPMLSHYIAG---- 55
Query: 83 LSDSRRPMKSVLPSGATWVKD---------KIVSFDPENNRVRTQAGSEISYEYMIVASG 133
P + P W + + D V T+ G E+ Y+ +++A+G
Sbjct: 56 ----FIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKG-EVPYDTLVLATG 110
Score = 29.1 bits (66), Expect = 4.8
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 602 DKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
++ D V T+ G E+ Y+ +++A+G
Sbjct: 81 EEAKLIDRGRKVVITEKG-EVPYDTLVLATG 110
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 35.6 bits (83), Expect = 0.061
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP--E 326
+ + + G+ + G+ + E+ K ++ + I+ V G P
Sbjct: 239 TDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAV----GFRPNTT 294
Query: 327 LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
L ++ + ++G V+K Q V+AIGDC+ + T T
Sbjct: 295 LGNGKIDLFRNGAFLVNKR--QETSIPGVYAIGDCATIYDNATRDTN 339
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 35.2 bits (82), Expect = 0.075
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 20/105 (19%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID-LANKEAVFKSEDKTE----RLPYAIMHVTPPMGP 323
+H + +G+ + + + A+ V + E ++ A+ G
Sbjct: 214 RRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLAL-------GR 266
Query: 324 VPELATSRL------VDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
+P L ++ G + VD ++A+GD ++
Sbjct: 267 MPNTNGLGLEAAGVRTNELGAIIVDA--FSRTSTPGIYALGDVTD 309
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 34.8 bits (81), Expect = 0.089
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID-LANKEAVFKSEDKTE----RLPYAIMHVTPPMGP 323
+++ + L G++V + ++ A+ E E + AI G
Sbjct: 234 RKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI-------GR 286
Query: 324 VPELATSRL------VDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
VP T +L V ++G + VD N++AIGD ++
Sbjct: 287 VPRSQTLQLEKAGVEVAKNGAIKVDA--YSKTNVDNIYAIGDVTD 329
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 34.8 bits (81), Expect = 0.093
Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP--E 326
+ + + + + + G+ + + + ++ ++ V G P
Sbjct: 194 TDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV----GVRPNTA 249
Query: 327 LATSRL-VDQSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
L + +G + D+ +VFA+GD + P
Sbjct: 250 WLKGTLELHPNGLIKTDEY--MRTSEPDVFAVGDATLIKYNPADTEV 294
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 34.8 bits (81), Expect = 0.10
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID-LANKEAVFKSEDKTERLPYAIMHVTPPMGPVPEL 327
+E + +++ G +H + + + ED ++ G P
Sbjct: 211 SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI---GREPAN 267
Query: 328 ATSRL------VDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
L ++ GY+ VDK Q+ ++A+GD +
Sbjct: 268 DNINLEAAGVKTNEKGYIVVDK--YQNTNIEGIYAVGDNTG 306
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 34.4 bits (80), Expect = 0.11
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTE----RLPYAIMHVTPPMGPV 324
+ ++D ++ +G+ + + ++ + R+ A G V
Sbjct: 235 RQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLAT-------GRV 287
Query: 325 PELATSRL------VDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
P L V++ G V VD+ S+++A+GD +
Sbjct: 288 PNTTGLGLERAGVKVNEFGAVVVDE--KMTTNVSHIWAVGDVTG 329
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 34.4 bits (80), Expect = 0.12
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 16/110 (14%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLP--YAIMHVTPPMGPVP- 325
++ + L V VH G+ +V ++ N + DK L I+ G P
Sbjct: 205 SQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRT-LDADLVILAA----GVSPN 259
Query: 326 -ELATSRLVD--QSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
+LA ++ G + VD ++FA GDC NL T K
Sbjct: 260 TQLARDAGLELDPRGAIIVDTR--MRTSDPDIFAGGDCVTIPNLVTGKPG 307
Score = 29.8 bits (68), Expect = 3.3
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
+VGGG G MA G ++VE D
Sbjct: 164 IVGGGFIGLEMAVSLADMWGI-DTTVVELAD 193
Score = 29.4 bits (67), Expect = 4.9
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 35 VVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL 94
+VGGG G MA G ++VE D Q M + ++ V
Sbjct: 164 IVGGGFIGLEMAVSLADMWGI-DTTVVELAD----QIMPGFTSKSLSQMLRHDLEKNDV- 217
Query: 95 PSGATWVKDKIVSFDPENNRVR--TQAGSEISYEYMIVASGI 134
+K+V + EN +V + + +I+A+G+
Sbjct: 218 ---VVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV 256
Score = 29.0 bits (66), Expect = 5.4
Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 28/124 (22%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--------YYQPMFTLIGGGMKKL 83
++V+G A G A +F + V++++ YY + G + +
Sbjct: 5 HVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYY------VSGEVSNI 58
Query: 84 SDSRRPMKSVLPSGATWVKDK---------IVSFDPENNRVR-----TQAGSEISYEYMI 129
+ +V+ + +K + D + V T + Y+ ++
Sbjct: 59 ESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLV 118
Query: 130 VASG 133
+A G
Sbjct: 119 LALG 122
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 34.4 bits (80), Expect = 0.13
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 28/113 (24%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID-LANKEAVFKSEDKTERLP------------YAIM 315
+ + L GV+V K + E+ + V RLP +AI
Sbjct: 231 STNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI- 289
Query: 316 HVTPPMGPVPELATSRL------VDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
G VP L D G++ VD+ Q+ ++A+GD
Sbjct: 290 ------GRVPNTKDLSLNKLGIQTDDKGHIIVDE--FQNTNVKGIYAVGDVCG 334
Score = 30.2 bits (69), Expect = 2.6
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 16 SSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
P + + S LV+GGG+ G + +A+ ++LG + ++VE
Sbjct: 6 PQPQGPPPAAGAVASYDYLVIGGGSGGLA-SARRAAELGA-RAAVVE 50
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 34.4 bits (80), Expect = 0.13
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 29/112 (25%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM---------KK 82
L+VVGGG G + + KLG QVS+VE + I +
Sbjct: 173 HLVVVGGGYIGLELGIAY-RKLG-AQVSVVEARER---------ILPTYDSELTAPVAES 221
Query: 83 LSDSRRPMKSVLPSGATWVKDKI-VSFDPENNRVRTQAGSEISYEYMIVASG 133
L + + L ++ ++ D + + + ++VA G
Sbjct: 222 L--KKLGIALHLGHSVEGYENGCLLANDGKG------GQLRLEADRVLVAVG 265
Score = 31.3 bits (72), Expect = 1.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD 503
HL VVGGG G + + +LG QVS+VE +
Sbjct: 173 HLVVVGGGYIGLELGIAY-RKLG-AQVSVVEARER 205
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 34.0 bits (79), Expect = 0.15
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
L V+G +A F +RLG +V+++
Sbjct: 178 RLAVIGSSVVALELAQAF-ARLG-SKVTVLA 206
Score = 33.3 bits (77), Expect = 0.29
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 20 STSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
ST L+S + +L V+G +A F ++LG +V+++
Sbjct: 166 STEALASDTIPERLAVIGSSVVALELAQAF-ARLG-SKVTVLA 206
Score = 32.9 bits (76), Expect = 0.42
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVPELA 328
E + G++V + ++ + E V + R ++ G P
Sbjct: 219 GEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVAT----GRTPNTR 274
Query: 329 TSRL------VDQSGYVNVDK--ATLQHVKYSNVFAIGDCSNLP 364
+ L V+ G + +D+ T N++A GDC++ P
Sbjct: 275 SLALDAAGVTVNAQGAIVIDQGMRT----SNPNIYAAGDCTDQP 314
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 34.3 bits (77), Expect = 0.17
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDDHYYQPMFTLIG 514
+ + ++ +VGGG AG A+ L + ++++E I
Sbjct: 3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIP 53
Score = 33.5 bits (75), Expect = 0.22
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDDHYYQPMFTLIG 77
+++VGGG AG A+ L + ++++E I
Sbjct: 7 NIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIP 53
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 34.1 bits (79), Expect = 0.18
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 20/105 (19%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID-LANKEAVFKSEDKTE----RLPYAIMHVTPPMGP 323
E++ L G+++ + ++ + E + AI G
Sbjct: 238 REEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAI-------GR 290
Query: 324 VPELATSRL------VDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
+P +L + G V VD+ N++AIGD ++
Sbjct: 291 IPRTNDLQLGNVGVKLTPKGGVQVDE--FSRTNVPNIYAIGDITD 333
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 33.6 bits (78), Expect = 0.19
Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 13/108 (12%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP--E 326
AE I+ +++ + + + +++ T + ++ V G P +
Sbjct: 230 AEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSV----GVKPNTD 285
Query: 327 LATSRLVD--QSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
+ G + V+ +V+A GDC+ ++
Sbjct: 286 FLEGTNIRTNHKGAIEVNAY--MQTNVQDVYAAGDCATHYHVIKEIHD 331
Score = 28.6 bits (65), Expect = 8.3
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 26/120 (21%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH--------YYQPMFTLIGGGMKKL 83
+++GG AAG S A + V +E + + Y I G +
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYV------ISGAIAST 91
Query: 84 SD--SRRP--MKSVLPSGAT-WVKDKIVSFDPENNRVR-----TQAGSEISYEYMIVASG 133
+R + G V+ ++ D E V T+ E SY+ +++A+G
Sbjct: 92 EKLIARNVKTFRDKY--GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG 149
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 33.6 bits (78), Expect = 0.21
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP--E 326
+ I D L R + + + I+ E FKS K E I V G P +
Sbjct: 192 NQPILDELDKREIPYRLNEEINAIN--GNEITFKS-GKVEHYDMIIEGV----GTHPNSK 244
Query: 327 LATSRLVD--QSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
S + + G++ V+ N++AIGD + A
Sbjct: 245 FIESSNIKLDRKGFIPVNDK--FETNVPNIYAIGDIATSHYRHVDLPA 290
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 33.7 bits (76), Expect = 0.22
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 22 SPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
++ S +LV+G G G AAK +++ IV+
Sbjct: 2 IAMTHPDISVDVLVIGAGPTGLG-AAKRLNQIDGPSWMIVD 41
Score = 28.7 bits (63), Expect = 7.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
+ V+G G G AAK +++ IV+
Sbjct: 11 VDVLVIGAGPTGLG-AAKRLNQIDGPSWMIVD 41
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 33.5 bits (75), Expect = 0.24
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTDD 66
+++VGGG AG A+ + V++VE +
Sbjct: 4 SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV 39
Score = 31.6 bits (70), Expect = 1.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTDD 503
+ + +VGGG AG A+ + V++VE +
Sbjct: 2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV 39
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 33.4 bits (76), Expect = 0.27
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSI--VEPTDDHY 68
HS LL+VGGG C AA + + D
Sbjct: 21 HSVDLLMVGGGMGNC-GAAFEAVRWADKYAPEAKILLVDKAS 61
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 33.3 bits (77), Expect = 0.28
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 20/115 (17%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
+ V G G G + S+LG V + + + + + +R +
Sbjct: 176 SVAVFGPGVIGLELGQAL-SRLG-VIVKVFGRSGS---------VANLQDE--EMKRYAE 222
Query: 92 SVLPS-GATWVKDKIVSFDPENNRVRTQAGS------EISYEYMIVASGIQMYYD 139
K +++S + + V S++Y++ A+G + D
Sbjct: 223 KTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD 277
Score = 32.6 bits (75), Expect = 0.48
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 333 VDQSGYVNVDKATLQHVKYSNVFAIGDCSNLP 364
+D+ D+ TLQ ++F GD +N
Sbjct: 288 LDKKNSPLFDELTLQ-TSVDHIFVAGDANNTL 318
Score = 30.2 bits (69), Expect = 2.3
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
+ V G G G + SRLG V + + +
Sbjct: 176 SVAVFGPGVIGLELGQAL-SRLG-VIVKVFGRSGS---------VANLQ 213
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 33.3 bits (77), Expect = 0.28
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 52/136 (38%)
Query: 24 LSSSSHSCKLLVVGGGAAGCSMAAK-----FTSKLGKGQVSIV--EPTDDHY-YQPMFTL 75
+S + ++V+G G A S A+ + G +++V E Y
Sbjct: 1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQ-----GLITVVGDEA---ERPYD----- 47
Query: 76 IGGGMKKLSDSRRPM--KSVLPSGATWVKD----------------KIVSFDPENNRVRT 117
RP K + + K SFDP+ + V
Sbjct: 48 ------------RPPLSKDFM-AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVAL 94
Query: 118 QAGSEISYEYMIVASG 133
G + Y +++A+G
Sbjct: 95 SDGRTLPYGTLVLATG 110
Score = 28.7 bits (65), Expect = 6.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 604 IVSFDPENNRVRTQAGSEISYEYMIVASG 632
SFDP+ + V G + Y +++A+G
Sbjct: 82 AQSFDPQAHTVALSDGRTLPYGTLVLATG 110
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 33.2 bits (74), Expect = 0.29
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 449 YWNLMLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTD 502
+ + G + ++ + +VGGG AG A+ L +++++ D
Sbjct: 7 HHHHSSGLVPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61
Score = 32.4 bits (72), Expect = 0.58
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTD 65
K+L+VGGG AG A+ L +++++ D
Sbjct: 27 KILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 33.3 bits (77), Expect = 0.32
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 23/113 (20%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM-----KKLSDS 86
L+VVG G G ++LG V++V D + L +S
Sbjct: 184 HLIVVGSGVTGAEFVD-AYTELG-VPVTVVASQDH---------VLPYEDADAALVLEES 232
Query: 87 --RRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASGIQMY 137
R ++ + A V V G + + ++ G
Sbjct: 233 FAERGVRLFKNARAASVTRT-----GAGVLVTMTDGRTVEGSHALMTIGSVPN 280
Score = 31.0 bits (71), Expect = 1.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
HL VVG G G + LG V++V
Sbjct: 184 HLIVVGSGVTGAEFVD-AYTELG-VPVTVVA 212
Score = 29.5 bits (67), Expect = 4.7
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSED-KTERLPYAIMHVTPPMGPVPEL 327
A + + RGV + K + + D +T +A+M + G VP
Sbjct: 226 ALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTI----GSVPNT 281
Query: 328 ATSRL------VDQSGYVNVDK--ATLQHVKYSNVFAIGDCSNLP 364
+ L + + Y+ VD+ T + ++A GDC+ L
Sbjct: 282 SGLGLERVGIQLGRGNYLTVDRVSRT----LATGIYAAGDCTGLL 322
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 32.8 bits (74), Expect = 0.40
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
L VVG G G ++A + ++L K +V ++E H IGG
Sbjct: 9 DLFVVGSGFFGLTIAERVATQLDK-RVLVLE-RRPH--------IGGNA 47
Score = 29.7 bits (66), Expect = 3.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
VVG G G ++A + ++L K +V ++E H IGG
Sbjct: 12 VVGSGFFGLTIAERVATQLDK-RVLVLE-RRPH--------IGGNA 47
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 32.5 bits (75), Expect = 0.41
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 41/126 (32%)
Query: 30 SCKLLVVGGGAAGCSMAA-----KFTSKLGKGQVSIV--EPTDDHY-YQ--PMFTLIGGG 79
+ + ++G G G + A F G++S++ EP H Y
Sbjct: 2 ATHVAIIGNGVGGFTTAQALRAEGFE-----GRISLIGDEP---HLPYDRPS-------- 45
Query: 80 MKKLS----DSRRPMKSVLPSGATWVKDKI--------VSFDPENNRVRTQAGSEISYEY 127
LS D +L + + +I + D + + G+ +S +
Sbjct: 46 ---LSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADA 102
Query: 128 MIVASG 133
+++A+G
Sbjct: 103 IVIATG 108
Score = 29.8 bits (68), Expect = 3.3
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 34/91 (37%)
Query: 235 VLIGDE-------------YLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGV 281
LIGDE L +R +L + +Y E +
Sbjct: 31 SLIGDEPHLPYDRPSLSKAVLDGSLERPP----------ILAEADWYGE--------ARI 72
Query: 282 DVHKGKALVEIDLANKEAVFKSEDKTERLPY 312
D+ G + +D+ + L
Sbjct: 73 DMLTGPEVTALDVQTRTISLDDG---TTLSA 100
Score = 29.1 bits (66), Expect = 5.7
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 605 VSFDPENNRVRTQAGSEISYEYMIVASG 632
+ D + + G+ +S + +++A+G
Sbjct: 81 TALDVQTRTISLDDGTTLSADAIVIATG 108
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 32.6 bits (75), Expect = 0.47
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID-LANKEAVFKSEDKTERLP-----YAIMHVTPPMG 322
+ + + +++ +VEI +++K D Y + G
Sbjct: 220 INVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV-------G 272
Query: 323 PVPE-----LATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAA 371
P+ L + + Y+ VD+ Q +N++A+GDC + SK
Sbjct: 273 RSPDTENLKLEKLNVETNNNYIVVDE--NQRTSVNNIYAVGDCCMVKKSKEIED 324
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 32.6 bits (75), Expect = 0.52
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 32/126 (25%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAK-----FTSKLGKGQVSIV--EPTDDHY-YQ-PMFTLI 76
+ +++VG G G A F G+V ++ EP Y+ P +
Sbjct: 5 VQAERADVVIVGAGHGGAQAAIALRQNGFE-----GRVLVIGREP---EIPYERPPLS-- 54
Query: 77 GGGMKK-LSDSRRPMKSVLPSGATWVKDKI--------VSFDPENNRVRTQAGSEISYEY 127
K+ L+ + + + W + VS DP + V+ GS I Y
Sbjct: 55 ----KEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGK 110
Query: 128 MIVASG 133
+I A+G
Sbjct: 111 LIWATG 116
Score = 29.1 bits (66), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 602 DKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
++VS DP + V+ GS I Y +I A+G
Sbjct: 86 AEVVSLDPAAHTVKLGDGSAIEYGKLIWATG 116
Score = 29.1 bits (66), Expect = 5.5
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 41/121 (33%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
+V+GGG G AA T K G V+++E R +
Sbjct: 154 NAVVIGGGYIGLEAAAVLT-KFGV-NVTLLEALP----------------------RVLA 189
Query: 92 SVLPSG-ATWVKD-------------KIVSFDPENNR---VRTQAGSEISYEYMIVASGI 134
V + + + + + + + VR Q GS I + +IV GI
Sbjct: 190 RVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGI 249
Query: 135 Q 135
Sbjct: 250 V 250
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 32.6 bits (74), Expect = 0.52
Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 16/131 (12%)
Query: 31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPM 90
+ ++GGG AG + A + V+++E + + +GG +
Sbjct: 109 VDVAIIGGGPAG--IGAALELQQY-LTVALIE--ERGW-------LGG---DMWLKGIKQ 153
Query: 91 KSVLPSGATWVKDKIVSFDPENN-RVRTQAGSEISYEYMIVASGIQMYYDRVKGPSALIN 149
+ V++ + + + T A + ++ ++
Sbjct: 154 EGFNKDSRKVVEELVGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVL 213
Query: 150 ALGHCDLVRSF 160
A G D F
Sbjct: 214 ATGAIDSTMLF 224
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 32.5 bits (74), Expect = 0.55
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 11 SYNLLSSSFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
S++ S P S +VVG G G + AA + G V +V+
Sbjct: 4 SHHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLA-AAYYLKVWSGGSVLVVD 54
Score = 30.1 bits (68), Expect = 2.7
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
VVG G G + AA + G V +V+
Sbjct: 28 VVGAGVVGLA-AAYYLKVWSGGSVLVVD 54
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 32.1 bits (73), Expect = 0.69
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
+ + S LL+VG G G S A ++ G V++++
Sbjct: 2 AVTKSSSLLIVGAGTWGTS-TALHLARRGYTNVTVLD 37
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 31.8 bits (73), Expect = 0.72
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 33 LLVVGGGAAGCSMAAK-----FTSKLGKGQVSIV--EPTDDHY-YQ--PM--FTLIGGGM 80
+L+ G G AG +A + G+++++ E H YQ P+ L
Sbjct: 4 VLIAGAGHAGFQVAVSLRQAKYP-----GRIALINDEK---HLPYQRPPLSKAYLKS--- 52
Query: 81 KKLSDSR---RPMKSVLPSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
+ RP K + D++VS D E ++ +G+ I Y ++++A+G
Sbjct: 53 -GGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATG 107
Score = 31.4 bits (72), Expect = 1.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 596 GATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 632
+ D++VS D E ++ +G+ I Y ++++A+G
Sbjct: 71 AIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATG 107
Score = 30.2 bits (69), Expect = 2.7
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 41/121 (33%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
++V+G G G AA G +V +VE R M
Sbjct: 144 HVVVIGAGFIGLEFAATAR-AKGL-EVDVVELAP----------------------RVMA 179
Query: 92 SVL-PSGATWVKD-------------KIVSFDPENNR---VRTQAGSEISYEYMIVASGI 134
V+ P +++ D + E +R V G+ + + ++V G+
Sbjct: 180 RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239
Query: 135 Q 135
Sbjct: 240 I 240
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A
{Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB:
1qay_A* 1qax_A* 1r7i_A 1t02_A*
Length = 428
Score = 31.9 bits (72), Expect = 0.74
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSD 85
++S+ KL GG ++ L QV IV D + + +L++
Sbjct: 89 AASYMAKLARANGGF-----TTSSSAPLMHAQVQIVGIQDPLNARLSLLRRKDEIIELAN 143
Query: 86 SRRPMKSVLPSGATWVKDKIVSFDPENNRV 115
+ + + L G ++ + P +
Sbjct: 144 RKDQLLNSLGGGCRDIEVHTFADTPRGPML 173
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 31.7 bits (73), Expect = 0.78
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
+L+VVGGG G + + +LG +V ++E D I M SR +
Sbjct: 169 RLIVVGGGVIGLELGVVW-HRLG-AEVIVLEYMDR---------ILPTMDL-EVSRAAER 216
Query: 92 SVLPSGAT-WVKDKIVSFDPENNRVR--TQAGSEISYEYMIVASGIQMY 137
G T ++ + PE R + G + + ++VA G + Y
Sbjct: 217 VFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPY 265
Score = 31.7 bits (73), Expect = 0.79
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
L VVGGG G + + RLG +V ++E D I M
Sbjct: 169 RLIVVGGGVIGLELGVVW-HRLG-AEVIVLEYMDR---------ILPTM 206
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 31.7 bits (73), Expect = 0.83
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID--LANKEAVFKSEDKTERLP-----YAIMHVTPPM 321
I D + G++VHK +V+++ + + D + I
Sbjct: 229 QNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTI------- 281
Query: 322 GPVPEL-----ATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
G L ++ + D+ Q+ N++++GD
Sbjct: 282 GRKSHLGMGSENVGIKLNSHDQIIADE--YQNTNVPNIYSLGDVVG 325
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 31.8 bits (73), Expect = 0.90
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 29/112 (25%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEA------VFKSEDKTERLP-------YAIM 315
A KI + + G+ + ++++ V +S + E + AI
Sbjct: 253 ANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAI- 311
Query: 316 HVTPPMGPVP-------ELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDC 360
G E ++ +++G + V + ++AIGD
Sbjct: 312 ------GRDACTRKIGLETVGVKINEKTGKIPVTD--EEQTNVPYIYAIGDI 355
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 31.6 bits (71), Expect = 0.97
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 81
++VG G G A KL K +V ++E +H IGG
Sbjct: 3 DYIIVGSGLFGAV-CANELKKLNK-KVLVIE-KRNH--------IGGNAY 41
Score = 29.3 bits (65), Expect = 4.5
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMK 518
M+ +VG G G A +L K +V ++E +H IGG
Sbjct: 1 MYDYIIVGSGLFGAV-CANELKKLNK-KVLVIE-KRNH--------IGGNAY 41
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 31.4 bits (72), Expect = 0.99
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 24/107 (22%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID----------LANKEAVFKSEDKTERLPYAIMHVT 318
AE + + RG+ + + ++ N E +SED + + +AI
Sbjct: 230 AELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAI---- 285
Query: 319 PPMGPVPE-----LATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDC 360
G L + + Q + VD + +N++A+GD
Sbjct: 286 ---GRKGLVDDLNLPNAGVTVQKDKIPVDS--QEATNVANIYAVGDI 327
Score = 29.0 bits (66), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 33 LLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG 78
L+V+GGG+AG + AK G +V+ ++ +GG
Sbjct: 12 LIVIGGGSAGLA-CAKEAVLNGA-RVACLDFVKPTPTLGTKWGVGG 55
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 31.4 bits (70), Expect = 1.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
K++++G G G AA ++LG + E
Sbjct: 11 KIVIIGAGPTGLG-AAVRLTELGYKNWHLYE 40
Score = 30.2 bits (67), Expect = 2.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 466 QMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
+ ++G G G AA + LG + E
Sbjct: 8 LTPKIVIIGAGPTGLG-AAVRLTELGYKNWHLYE 40
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 31.4 bits (72), Expect = 1.0
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 26/111 (23%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEID----------LANKEAVFKSEDKTERLPYAIMHVT 318
+ + + + G KG I + + + + + +AI
Sbjct: 228 SSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAI---- 283
Query: 319 PPMGPVP-------ELATSRLVDQSGYVNVDKATLQHVKYSNVFAIGDCSN 362
G VP E A ++ + VD + +++AIGD +
Sbjct: 284 ---GRVPETRTLNLEKAGISTNPKNQKIIVDA--QEATSVPHIYAIGDVAE 329
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 31.4 bits (72), Expect = 1.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
+ VVGGG G + + + +RLG +V++VE D I GGM
Sbjct: 200 SMIVVGGGVIGLELGSVW-ARLG-AKVTVVEFLDT---------ILGGM 237
Score = 29.0 bits (66), Expect = 5.7
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
++VVGGG G + + + ++LG +V++VE D I GGM
Sbjct: 200 SMIVVGGGVIGLELGSVW-ARLG-AKVTVVEFLDT---------ILGGM 237
Score = 28.7 bits (65), Expect = 7.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 333 VDQSGYVNVDK--ATLQHVKYSNVFAIGDC 360
+D G V +D+ T + V+AIGD
Sbjct: 314 LDSRGRVEIDRHFQT----SIAGVYAIGDV 339
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 31.3 bits (72), Expect = 1.0
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 27 SSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
+ ++++G GAAG M A K G+ +V +++
Sbjct: 24 VAEKQDVVIIGAGAAGM-MCAIEAGKRGR-RVLVID 57
Score = 28.6 bits (65), Expect = 8.1
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 468 FHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
+ ++G GAAG M A + G+ +V +++
Sbjct: 28 QDVVIIGAGAAGM-MCAIEAGKRGR-RVLVID 57
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 31.4 bits (72), Expect = 1.0
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 42/129 (32%)
Query: 28 SHSCKLLVVGGGAAGCSMAAK-----FTSKLGKGQVSIV--EPTDDHY-YQ--PMFTLIG 77
+ + +++VG G AG +A + G + +V + P
Sbjct: 2 NANDNVVIVGTGLAGVEVAFGLRASGWE-----GNIRLVGDAT---VIPHHLPP------ 47
Query: 78 GGMKKLS-----DSRRPMKSVLPSGATWVKDKI--------VSFDPENNRVRTQAGSEIS 124
LS L + + I + + + +V G +
Sbjct: 48 -----LSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALD 102
Query: 125 YEYMIVASG 133
Y+ +++A+G
Sbjct: 103 YDRLVLATG 111
Score = 29.5 bits (67), Expect = 4.7
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 26/80 (32%)
Query: 233 KAVLIGDEYLRKHKKRDAAKLTYCTGMGVLFPSPFYAEKIHDILIGRGVDVHKGKALVEI 292
KA L G A L L YA + + + G + I
Sbjct: 50 KAYLAGKA--------TAESLY-------LRTPDAYAA--------QNIQLLGGTQVTAI 86
Query: 293 DLANKEAVFKSEDKTERLPY 312
+ ++ + L Y
Sbjct: 87 NRDRQQVILSDG---RALDY 103
Score = 29.1 bits (66), Expect = 5.4
Identities = 5/30 (16%), Positives = 17/30 (56%)
Query: 603 KIVSFDPENNRVRTQAGSEISYEYMIVASG 632
++ + + + +V G + Y+ +++A+G
Sbjct: 82 QVTAINRDRQQVILSDGRALDYDRLVLATG 111
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
transfer, transferase; 1.53A {Streptomyces wedmorensis}
PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Length = 286
Score = 31.1 bits (70), Expect = 1.1
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 8/97 (8%)
Query: 24 LSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKL 83
L+ + +L+ GGGA G S + F + +KL
Sbjct: 59 LAETYRGRMVLISGGGAFGHGAIRDHDSTHAFSLA--------GLTEATFEVKKRWAEKL 110
Query: 84 SDSRRPMKSVLPSGATWVKDKIVSFDPENNRVRTQAG 120
+ + +++ I E R G
Sbjct: 111 RGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHG 147
Score = 29.2 bits (65), Expect = 4.3
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 8/83 (9%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMKSVL 531
+ GGGA G S + F + +KL +
Sbjct: 70 ISGGGAFGHGAIRDHDSTHAFSLA--------GLTEATFEVKKRWAEKLRGIGVDAFPLQ 121
Query: 532 PSGATWVKDKIVSFDSSYTFTIL 554
+ +++ I S +L
Sbjct: 122 LAAMCTLRNGIPQLRSEVLRDVL 144
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 31.3 bits (70), Expect = 1.1
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 25 SSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLS 84
+ S K++++G G AG AA + G ++E D +GG +L
Sbjct: 3 TVSPAKKKVIIIGAGIAGLK-AASTLHQNGIQDCLVLEARDR---------VGG---RLQ 49
Query: 85 DSRRPMKSVLPSGATWV 101
GA+W
Sbjct: 50 TVTGYQGRKYDIGASWH 66
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway,
envelope stress, transduction; HET: MSE; 1.45A
{Escherichia coli str} PDB: 3qzc_A
Length = 145
Score = 30.0 bits (67), Expect = 1.3
Identities = 7/36 (19%), Positives = 23/36 (63%)
Query: 666 EQKHKQYQLVSPEIRAKAYDLTKRKMKKEAQWIRFQ 701
+ +++ Y+L++PE +A + +++M++ ++Q
Sbjct: 110 KVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQ 145
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 31.0 bits (71), Expect = 1.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDD 503
+ ++G G G +A+ F +G Q I+E D
Sbjct: 174 DMVIIGAGYIGLEIASIF-RLMG-VQTHIIEMLDR 206
Score = 29.4 bits (67), Expect = 4.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD 66
++++G G G +A+ F +G Q I+E D
Sbjct: 174 DMVIIGAGYIGLEIASIF-RLMG-VQTHIIEMLDR 206
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 30.9 bits (71), Expect = 1.4
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
L V+GGG G + + + G +V+I+E + I G
Sbjct: 172 SLVVIGGGYIGIELGTAY-ANFG-TKVTILEGAGE---------ILSGF 209
Score = 29.4 bits (67), Expect = 4.0
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 32/115 (27%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
L+V+GGG G + + + G +V+I+E + I G +K +K
Sbjct: 172 SLVVIGGGYIGIELGTAY-ANFG-TKVTILEGAGE---------ILSGFEK--QMAAIIK 218
Query: 92 SVLP------------SGATWVKDKI-VSFDPENNRVRTQAGSEISYEYMIVASG 133
L GA +D + V+++ I +Y++V G
Sbjct: 219 KRLKKKGVEVVTNALAKGAEEREDGVTVTYEANG------ETKTIDADYVLVTVG 267
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 30.9 bits (71), Expect = 1.4
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 30/115 (26%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM---------KK 82
+LLV+GGGA G + + +LG +V+++E + I +
Sbjct: 171 RLLVIGGGAVGLELGQVY-RRLG-AEVTLIEYMPE---------ILPQGDPETAALLRRA 219
Query: 83 LSDSRRPMKSVLPSGATWVKDK----IVSFDPENNRVRTQAGSEISYEYMIVASG 133
L + ++ + A + K V +P G E+ + ++VA G
Sbjct: 220 L--EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEG----GEGEEVVVDKVLVAVG 268
Score = 30.9 bits (71), Expect = 1.5
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
L V+GGGA G + + RLG +V+++E + I
Sbjct: 171 RLLVIGGGAVGLELGQVY-RRLG-AEVTLIEYMPE---------ILPQG 208
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 30.9 bits (71), Expect = 1.4
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
+ V+G G G + + + RLG V+ VE + G G+
Sbjct: 180 KMVVIGAGVIGVELGSVW-QRLG-ADVTAVEFLG--------HVGGVGI 218
Score = 29.0 bits (66), Expect = 6.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 333 VDQSGYVNVDK--ATLQHVKYSNVFAIGDC 360
+D G + V+ T K N++AIGD
Sbjct: 296 LDPRGRIPVNTRFQT----KIPNIYAIGDV 321
Score = 28.6 bits (65), Expect = 7.4
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
K++V+G G G + + + +LG V+ VE + G G+
Sbjct: 180 KMVVIGAGVIGVELGSVW-QRLG-ADVTAVEFLG--------HVGGVGI 218
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 31.1 bits (70), Expect = 1.5
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 18 SFSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
+ + VVGGG +G + A G ++E +
Sbjct: 4 HHHHHHHMPRTTGMNVAVVGGGISGLA-VAHHLRSRGT-DAVLLESSA 49
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 30.9 bits (70), Expect = 1.6
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 29 HSCKLLVVGGGAAGC--SMAAKFTSKLGKGQVSIVE 62
+L++GGG +GC + A + +KLG +V++VE
Sbjct: 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 30.9 bits (71), Expect = 1.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 28 SHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
S + +++G GAAG A +KLGK V++ +
Sbjct: 2 SQYSENIIIGAGAAGL-FCAAQLAKLGK-SVTVFD 34
Score = 28.6 bits (65), Expect = 7.5
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
++G GAAG A ++LGK V++ +
Sbjct: 9 IIGAGAAGL-FCAAQLAKLGK-SVTVFD 34
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 30.7 bits (70), Expect = 1.7
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
+ VVGG F + G + ++
Sbjct: 216 TVVVVGGSKTAVEYGCFF-NATG-RRTVMLV 244
Score = 28.8 bits (65), Expect = 7.8
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
++VVGG F + G + ++
Sbjct: 216 TVVVVGGSKTAVEYGCFF-NATG-RRTVMLV 244
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 31.0 bits (71), Expect = 1.7
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
L ++GGG G M + S LG ++ +VE D + G
Sbjct: 187 KLLIIGGGIIGLEMGTVY-STLG-SRLDVVEMMDG---------LMQGA 224
Score = 30.2 bits (69), Expect = 2.5
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 31/115 (26%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
KLL++GGG G M + S LG ++ +VE D + G + D + +
Sbjct: 187 KLLIIGGGIIGLEMGTVY-STLG-SRLDVVEMMDG---------LMQGADR--DLVKVWQ 233
Query: 92 SVLP------------SGATWVKDKI-VSFDPENNRVRTQAGSEISYEYMIVASG 133
+D + V+F+ N Y+ ++VA+G
Sbjct: 234 KQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEP-----QRYDAVLVAAG 283
Score = 28.7 bits (65), Expect = 8.6
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 333 VDQSGYVNVDKATLQHVKYSNVFAIGDC 360
V G++ VDK +++AIGD
Sbjct: 300 VTDRGFIEVDKQ--MRTNVPHIYAIGDI 325
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 30.7 bits (69), Expect = 1.7
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 17 SSFSTSPLSSSSHSCKLLVVGGGAAGCSMAA 47
S P S K+ ++GGG AG
Sbjct: 10 HSSGLVPRGSHMTRSKVAIIGGGPAGSVAGL 40
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 30.6 bits (70), Expect = 1.7
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
L V+G G G M + + R+G +V++VE + I M
Sbjct: 179 KLVVIGAGYIGLEMGSVW-GRIG-SEVTVVEFASE---------IVPTM 216
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 30.7 bits (70), Expect = 1.9
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 472 VVGGGAAGCSMAAKFTSRLGK-GQVSIVE 499
V+G G AG S L G+V ++E
Sbjct: 14 VIGAGIAGASTGY----WLSAHGRVVVLE 38
Score = 30.7 bits (70), Expect = 1.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 34 LVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
LV+G G AG S + S G+ V ++E
Sbjct: 13 LVIGAGIAGASTGY-WLSAHGR--VVVLE 38
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 30.6 bits (70), Expect = 1.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 472 VVGGGAAGCSMAAKFTSRL---GKGQVSIVE--PTDDHYYQPMFTLIGGGMKKLSDSR 524
VVGGG+AG ++AA RL V++VE P D L +L +S
Sbjct: 18 VVGGGSAGAAVAA----RLSEDPAVSVALVEAGPDDRG---VPEVLQLDRWMELLESG 68
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 30.7 bits (70), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 25 SSSSHSCKLLVVGGGAAGCSMA 46
+ HSC +L++G GAAG S+A
Sbjct: 3 TLPEHSCDVLIIGSGAAGLSLA 24
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 30.6 bits (70), Expect = 2.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
L ++GGG G M + + SRLG +V++VE IG M
Sbjct: 185 RLTIIGGGIIGLEMGSVY-SRLG-SKVTVVEFQPQ---------IGASM 222
Score = 29.4 bits (67), Expect = 4.2
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 333 VDQSGYVNVDK--ATLQHVKYSNVFAIGDC 360
VD+ G + +D + K+ ++ +GD
Sbjct: 301 VDKRGRLVIDDQFNS----KFPHIKVVGDV 326
Score = 28.3 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
+L ++GGG G M + + S+LG +V++VE IG M
Sbjct: 185 RLTIIGGGIIGLEMGSVY-SRLG-SKVTVVEFQPQ---------IGASM 222
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 30.6 bits (70), Expect = 2.0
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
+ + G GA G G V+IVE
Sbjct: 173 SIIIAGAGAIGMEFGY-VLKNYG-VDVTIVE 201
Score = 29.0 bits (66), Expect = 5.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
+++ G GA G G V+IVE
Sbjct: 173 SIIIAGAGAIGMEFGY-VLKNYG-VDVTIVE 201
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 30.4 bits (69), Expect = 2.2
Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 20/134 (14%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPT---DDHYYQPMFTLIGGGMKKLSDSRR 88
++ ++GGG +G + A+ ++ ++ EP DD + +F K + R
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGRE 224
Query: 89 PMKSVL---------------PSGATWVKDKIVSFDPENNRVRTQAGSEISYEYMIVASG 133
P G F P ++ G+E +++ +I +G
Sbjct: 225 PDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSP--TGMQWADGTERAFDAVIWCTG 282
Query: 134 IQMYYDRVKGPSAL 147
+ +KG +
Sbjct: 283 FRPALSHLKGLDLV 296
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.2 bits (69), Expect = 2.2
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANK--EAVFKSEDKTERLPYAIMHVTPPMGPVPE 326
++ I D L + + V ++ + + V + + A + P +
Sbjct: 183 SQTIMDELSNKNIPVITE-SIRTLQGEGGYLKKV-EFHSGLR-IERAGGFIVPTFFRPNQ 239
Query: 327 LATSRLV--DQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSKTAAAVA 373
+G +D K N++ G+ + S A +
Sbjct: 240 FIEQLGCELQSNGTFVIDDFGRTSEK--NIYLAGETTTQGPSSLIIAAS 286
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 30.5 bits (70), Expect = 2.3
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
+ V+GGG G + + + +RLG +V++VE +
Sbjct: 176 TMVVIGGGVIGLELGSVW-ARLG-AEVTVVEFAPR---------CAPTL 213
Score = 29.8 bits (68), Expect = 3.2
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 28/114 (24%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM--------KKL 83
++V+GGG G + + + ++LG +V++VE +
Sbjct: 176 TMVVIGGGVIGLELGSVW-ARLG-AEVTVVEFAPR---------CAPTLDEDVTNALVGA 224
Query: 84 SDSRRPMKSVLPSGATWVKDK----IVSFDPENNRVRTQAGSEISYEYMIVASG 133
MK + + + + + +N + T ++ E ++V+ G
Sbjct: 225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRET-----VTCEALLVSVG 273
Score = 29.0 bits (66), Expect = 6.3
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 333 VDQSGYVNVDK--ATLQHVKYSNVFAIGDC 360
++ G+V + T +V+AIGD
Sbjct: 290 KNERGFVKIGDHFET----SIPDVYAIGDV 315
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 30.2 bits (69), Expect = 2.4
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 25 SSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDD 66
+ ++H+ +V+G G G K +LG + D
Sbjct: 3 AQTTHTVDAVVIGAGFGGIYAVHKLHHELGL-TTVGFDKADG 43
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 30.2 bits (69), Expect = 2.5
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTLIGGGM 517
LGV+G G G + + + +RLG +V+++E D +
Sbjct: 182 KLGVIGAGVIGLELGSVW-ARLG-AEVTVLEAMDK---------FLPAV 219
Score = 29.8 bits (68), Expect = 3.9
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 32/115 (27%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGMKKLSDSRRPMK 91
KL V+G G G + + + ++LG +V+++E D + + + +
Sbjct: 182 KLGVIGAGVIGLELGSVW-ARLG-AEVTVLEAMDK---------FLPAVDE--QVAKEAQ 228
Query: 92 SVLP------------SGATWVKDKI-VSFDPENNRVRTQAGSEISYEYMIVASG 133
+L +G ++ V F +++ +IVA G
Sbjct: 229 KILTKQGLKILLGARVTGTEVKNKQVTVKFVDAE------GEKSQAFDKLIVAVG 277
Score = 29.4 bits (67), Expect = 5.1
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 333 VDQSGYVNVDK--ATLQHVKYSNVFAIGDC 360
+D+ G++ VD AT V+AIGD
Sbjct: 294 LDERGFIYVDDYCAT----SVPGVYAIGDV 319
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 30.0 bits (67), Expect = 2.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGGGM 80
K+L+VG G +G + ++ G QV I++ DH IGG
Sbjct: 5 KILIVGAGFSGAV-IGRQLAEKGH-QVHIID-QRDH--------IGGNS 42
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 30.2 bits (68), Expect = 2.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 26 SSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
S S ++ ++G G AG + A + + G +I+E TD
Sbjct: 2 SISKDSRIAIIGAGPAGLA-AGMYLEQAGFHDYTILERTD 40
Score = 29.1 bits (65), Expect = 5.9
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVEPTD 502
++G G AG + A + + G +I+E TD
Sbjct: 11 IIGAGPAGLA-AGMYLEQAGFHDYTILERTD 40
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.8 bits (68), Expect = 3.1
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 25 SSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
S++ ++V+GGG +G MAA ++ G V +++
Sbjct: 21 QSNAMHYDVIVIGGGPSGL-MAAIGAAEEGA-NVLLLD 56
Score = 29.0 bits (66), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 472 VVGGGAAGCSMAAKFTSRLGKGQVSIVE 499
V+GGG +G MAA + G V +++
Sbjct: 31 VIGGGPSGL-MAAIGAAEEGA-NVLLLD 56
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 29.8 bits (66), Expect = 3.4
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 19 FSTSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG 78
+ + + K++++G G +G + AA+ G V+++E D +GG
Sbjct: 96 YKRIKPLPTKKTGKVIIIGSGVSGLA-AARQLQSFGM-DVTLLEARDR---------VGG 144
Query: 79 GMKKLSDSRRPMKSVLPSGATWV 101
+ GA V
Sbjct: 145 RVATFRKGNYVAD----LGAMVV 163
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 30.0 bits (68), Expect = 3.7
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 29 HSCKLLVVGGGAAGCSMAAKFTSKLGKGQ----VSIVEPTDDH 67
L +VG G AG AA ++ +S V P H
Sbjct: 4 FQADLAIVGAGGAGL-RAAIAAAQANPNAKIALISKVYPMRSH 45
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.8 bits (68), Expect = 3.8
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 269 AEKIHDILIGRGVDVHKGKALVEIDLANKEAVFKSEDKTERLPYAIMHVTPPMGPVP--E 326
+ + + L + V++ + ++I+ + ++ + I+ G P E
Sbjct: 193 TDILEEKLK-KHVNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILAT----GIKPNIE 247
Query: 327 LATSRLVD--QSGYVNVDKATLQHVKYSNVFAIGDCS---NLPTSKTA 369
LA V ++G + ++ NV+A GD + ++ T +
Sbjct: 248 LAKQLGVRIGETGAIWTNEK--MQTSVENVYAAGDVAETRHVITGRRV 293
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 29.7 bits (66), Expect = 3.8
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 20 STSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
++ S + ++ V+G G +G + AA G V++ E
Sbjct: 3 PSAGEDKHSSAKRVAVIGAGVSGLA-AAYKLKIHGL-NVTVFEAEG 46
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 29.5 bits (66), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 31 CKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVE 62
+LVVG G AG AA+ S+ G +V +++
Sbjct: 129 TDVLVVGAGPAGL-AAAREASRSGA-RVMLLD 158
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 29.3 bits (64), Expect = 4.4
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 467 MFHLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVE 499
M + +VG G G AA + +++ +
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWD 34
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 29.4 bits (65), Expect = 4.7
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQ 70
+ K+ V GGG +++ S+ G +V ++ D +
Sbjct: 2 TVKVCVCGGGNGAHTLSGLAASRDGV-EVRVLTLFADEAER 41
Score = 29.0 bits (64), Expect = 5.9
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 471 GVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQ 507
V GGG +++ SR G +V ++ D +
Sbjct: 6 CVCGGGNGAHTLSGLAASRDGV-EVRVLTLFADEAER 41
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 29.4 bits (67), Expect = 5.0
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 472 VVGGGAAGCSMAAKFTSRL---GKGQVSIVE--PTDDHYYQPMFTLIGGGMKKLSDSR 524
+VGGG+AG +AA RL +V ++E L
Sbjct: 22 IVGGGSAGSLLAA----RLSEDPDSRVLLIEAGEEPTD----PDIWNPAAWPALQGRS 71
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO;
HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB:
4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A*
Length = 481
Score = 29.3 bits (65), Expect = 5.5
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 103 DKIVSFDPENNRVRTQAG 120
+ I S D + V AG
Sbjct: 98 NTIHSIDADTKLVDIDAG 115
Score = 29.3 bits (65), Expect = 5.5
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 602 DKIVSFDPENNRVRTQAG 619
+ I S D + V AG
Sbjct: 98 NTIHSIDADTKLVDIDAG 115
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 29.1 bits (66), Expect = 5.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 472 VVGGGAAGCSMAAKFTSRL---GKGQVSIVE--PTDDHY 505
VVG G AG +A +RL V ++E +D++
Sbjct: 7 VVGAGNAGNVVA----ARLTEDPDVSVLVLEAGVSDENV 41
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.2 bits (64), Expect = 5.7
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 453 MLRGYWNGPGVFRQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDHYYQPMFTL 512
+ NG + +VG G AG +A +R G V+I+E +
Sbjct: 30 LDVLIDNGLNPPGPPKRILIVGAGIAGL-VAGDLLTRAGH-DVTILEANANR-------- 79
Query: 513 IGG 515
+GG
Sbjct: 80 VGG 82
Score = 28.8 bits (63), Expect = 6.2
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 24 LSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDHYYQPMFTLIGG 78
L+ ++L+VG G AG +A ++ G V+I+E + +GG
Sbjct: 38 LNPPGPPKRILIVGAGIAGL-VAGDLLTRAGH-DVTILEANANR--------VGG 82
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 28.9 bits (63), Expect = 6.1
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTDDH 67
++++VGGG AG + A + ++ +
Sbjct: 9 EIIIVGGGTAGW-ITAGLLAAEHNVDKGVLAHSPKL 43
Score = 28.9 bits (63), Expect = 7.0
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 465 RQMFHLGVVGGGAAGCSMAAKFTSRLGKGQVSIVEPTDDH----YYQPMFTLIGGGMKKL 520
+ + + +VGGG AG + A + ++ + P IG G
Sbjct: 5 KPITEIIIVGGGTAGW-ITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTW 63
Query: 521 SDSRRPMKSVLPSGATWVKDKIVSFDSSYTF 551
R + + +++ SF F
Sbjct: 64 PSMRSTLSKIGIDENDFIRQCDASFKQGSRF 94
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 29.1 bits (66), Expect = 6.5
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 13/56 (23%)
Query: 472 VVGGGAAGCSMAAKFTSRL---GKGQVSIVE--PTDDHYY---QPMFTLIGGGMKK 519
+VG G G A RL GK +V ++E G+ K
Sbjct: 12 IVGAGPGGIIAAD----RLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.9 bits (65), Expect = 6.9
Identities = 4/17 (23%), Positives = 12/17 (70%)
Query: 30 SCKLLVVGGGAAGCSMA 46
+ +++++G G G ++A
Sbjct: 4 TPRIVIIGAGIVGTNLA 20
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 28.8 bits (64), Expect = 7.0
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 32 KLLVVGGGAAGCSMAAKFTSKLGKG-QVSIVEPTD 65
+L++VGGG G + AA + + ++++E +
Sbjct: 6 RLVIVGGGITGLA-AAYYAERAFPDLNITLLEAGE 39
Score = 28.4 bits (63), Expect = 8.7
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 469 HLGVVGGGAAGCSMAAKFTSRLGKG-QVSIVEPTD 502
L +VGGG G + AA + R ++++E +
Sbjct: 6 RLVIVGGGITGLA-AAYYAERAFPDLNITLLEAGE 39
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 28.7 bits (64), Expect = 7.1
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 30 SCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIV 61
+CK+LV+G G GC + K + G Q+ ++
Sbjct: 40 TCKVLVIGAGGLGCEL-LKNLALSGFRQIHVI 70
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 28.6 bits (65), Expect = 7.3
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 596 GATWVKDKIVSFDPENN--RVRTQAGSEISYEYMIVASGIQMYYDRVKGGTTSLEDRGKM 653
+ D + + + V+T+ E + +I+ G++ V G E
Sbjct: 84 EVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPG-----EQEFAG 138
Query: 654 RGVS-----DGF 660
RG+S D
Sbjct: 139 RGISYCSVADAP 150
Score = 28.6 bits (65), Expect = 7.7
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 334 DQSGYVNVDKATLQHVKYSNVFAIGDCSNLPTSK----TAA---AVAGQ 375
D +GY+ VD+ V VFA GDC++ TA AVA
Sbjct: 264 DTNGYIKVDEWMRTSVP--GVFAAGDCTSAWLGFRQVITAVAQGAVAAT 310
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 28.7 bits (64), Expect = 7.5
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 21 TSPLSSSSHSCKLLVVGGGAAGCSMAAKFTSKLGKGQVSIVEPTD 65
+ L ++S+ +++VG G AG AA + G QV+++E ++
Sbjct: 24 RNGLKATSNPKHVVIVGAGMAG-LSAAYVLAGAGH-QVTVLEASE 66
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 28.9 bits (64), Expect = 7.6
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 9 LKSYNLLSSSFSTSPLSSSSHSC------KLLVVGGGAAGCSMAAKFTS 51
L S + + L + S + ++GGGA +
Sbjct: 638 LTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNV 686
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 28.7 bits (65), Expect = 7.7
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Query: 472 VVGGGAAGCSMAAKFTSRL 490
+VGGG +GC +AA L
Sbjct: 31 IVGGGTSGCPLAA----TL 45
Score = 28.3 bits (64), Expect = 9.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 35 VVGGGAAGCSMAA 47
+VGGG +GC +AA
Sbjct: 31 IVGGGTSGCPLAA 43
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 28.3 bits (64), Expect = 9.0
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 14/41 (34%)
Query: 218 YTFPATPIKCG--------------GAPMKAVLIGDEYLRK 244
P + G GA + + GD+ L K
Sbjct: 79 LKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSK 119
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 28.2 bits (63), Expect = 9.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 28 SHSCKLLVVGGGAAGCSMA 46
+ S ++VVGGG G + A
Sbjct: 2 TESYDVVVVGGGPVGLATA 20
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 28.3 bits (64), Expect = 9.8
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 14/38 (36%)
Query: 221 PATPIKCG--------------GAPMKAVLIGDEYLRK 244
P P+ G + IGD L K
Sbjct: 85 PEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTK 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,880,820
Number of extensions: 671883
Number of successful extensions: 1876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1805
Number of HSP's successfully gapped: 219
Length of query: 706
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 606
Effective length of database: 3,909,693
Effective search space: 2369273958
Effective search space used: 2369273958
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)