BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8793
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 33/198 (16%)
Query: 148 GEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNK 207
GEKP+ C C K F ++ H R H GEKP
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKP---------------------------- 49
Query: 208 PTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ C +C K +S LT+H + G +P C C K F+ +++ H+++ +
Sbjct: 50 -----YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 268 IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+ C +C K F + L HQ H +PY+CP+C ++ +L H HTG KPY C
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 328 EICNKVLTHRSSLISHYR 345
C K + R +L H R
Sbjct: 165 PECGKSFSRRDALNVHQR 182
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%)
Query: 207 KPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNN 266
+P + C +C K +S + L +H + G +P C C K F+ + H+++
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 267 EIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYV 326
+ +KC +C K F L HQ H +PY CP+C ++ L AH HTG KPY
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 327 CEICNKVLTHRSSLISHYR 345
C C K + +L +H R
Sbjct: 136 CPECGKSFSREDNLHTHQR 154
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 33/182 (18%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H + HTGEKP+ C C K F + H R H GEKP C C ++F + +R H
Sbjct: 40 HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGKSFSQRANLRAHQ 97
Query: 202 RTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQ 261
RT G +P +C C K F+ + + H++
Sbjct: 98 RT-------------------------------HTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 262 SIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTG 321
+ + +KC +C K F L+ HQ H +PY+CP+C ++ +L+ H HTG
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 322 AK 323
K
Sbjct: 187 KK 188
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVR 52
H G K Y+C +C K+F+Q+ NL+ H R HTGEKP+ C C + F+ + +R
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVR 52
H G K Y+C +C K+F+ K +L H R HTGEKP+ C C + F+ + +R
Sbjct: 44 HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR 94
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
+ H + HTGEKP+ C C K F + H R H GEKP C C ++F +
Sbjct: 94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHT 151
Query: 200 HVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQ 239
H RT KP + C +C K +S +L H + G++
Sbjct: 152 HQRTHTGEKP----YKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G K Y+C +C K+F+++ NL H R HTGEKP+ C C + F+
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFS 172
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G K Y C +C K+F+Q +L+ H R HTGEKP+ C C + F+
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS 144
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNT 57
G K Y C +C K+F++ +L EH R HTGEKP+ C C + F+ + R T
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
H G K Y+C +C K+F+++ L H R HTG+K
Sbjct: 156 HTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 141 LHLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMR 198
+H++RHTGEKPH C E C K + E+ K HLR H GEKP C E C++ F +
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 199 KHVRTCHN--KPTVNRFPCDKCEKVYSCASSLTKHMKARLG 237
KH H+ KP V + P C K Y+ SSL KH+K G
Sbjct: 117 KHQNRTHSNEKPYVCKLP--GCTKRYTDPSSLRKHVKTVHG 155
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 140 KLHLKRHTGEKPHTCE--LCSKGFLSAESYKCHLRR-HKGEKPVTCTFENCTETFVESWA 196
K HL+ HTGEKP+ CE CSK F +A H R H EKP C CT+ + + +
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSS 145
Query: 197 MRKHVRTCHN 206
+RKHV+T H
Sbjct: 146 LRKHVKTVHG 155
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 36/123 (29%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLT 229
H+RRH GEKP CTFE C K YS +L
Sbjct: 58 HMRRHTGEKPHKCTFEGC-------------------------------RKSYSRLENLK 86
Query: 230 KHMKARLGRQPVSC--DICHKEFTHPSSVLYHKQSIHNNE---IFKCTKCDKVFQHIQLL 284
H+++ G +P C + C K F++ S H+ H+NE + K C K + L
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 285 NRH 287
+H
Sbjct: 147 RKH 149
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 244 DICHKEFTHPSSVLYHKQSIHNNEIFK--------CTKCDKVFQHIQLLNRHQLVHMDTR 295
D C +EF +++H S H + K C++ + F+ +L H H +
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 296 PYQC--PQCPMAYKTNISLSAHLMKHTGAKPYVC--EICNKVLTHRSSLISH 343
P++C C +Y +L HL HTG KPY+C E C+K ++ S H
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTC--NICSRKFTTYSQVRRSSNT 57
H G K ++C+ C K++++ NLK H R HTGEKP+ C CS+ F+ S + N
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 58 SARN 61
+ N
Sbjct: 122 THSN 125
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 60/176 (34%), Gaps = 36/176 (20%)
Query: 180 VTCTFENCTETFVESWAMRKHVRTCHNKPTVNRF-----PCDKCEKVYSCASSLTKHMKA 234
C ++ C++ F + H+ + H F C + + + L HM+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 235 RLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDT 294
G +P C C K + ++ L H H
Sbjct: 62 HTGEKPHKCTF--------------------------EGCRKSYSRLENLKTHLRSHTGE 95
Query: 295 RPYQCPQ--CPMAYKTNISLSAHLMK-HTGAKPYVCEI--CNKVLTHRSSLISHYR 345
+PY C C A+ + H + H+ KPYVC++ C K T SSL H +
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 2 HQGIKQYQCSQ--CPKAF-NQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRRSSN 56
H G K Y C C KAF N K R H+ EKP+ C + C++++T S +R+
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 57 T 57
T
Sbjct: 152 T 152
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
F C C K F+ L+ H L+H DTRPY C C + + H HTG KP+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 329 ICNKVLTHRSSLISHYR 345
+C K + S+LI+H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQV 51
H + Y C C K F+QK ++K+H IHTGEKP C +C + F+ S +
Sbjct: 24 HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 241 VSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCP 300
C IC K F S++ H + + C C K F + +H +H +P++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 301 QCPMAYKTNISLSAHLMKHTG 321
C A+ + +L H KHTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKG 176
K H HTGEKPH C++C K F + + H R+H G
Sbjct: 46 KKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+ C C K+F + L H IH+ +P+ C C ++F S +++
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKK 47
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
HL H+ +P+ C+ C K F K H H GEKP C + C + F +S + H
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHS 77
Query: 202 R 202
R
Sbjct: 78 R 78
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 33/106 (31%)
Query: 154 CELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRF 213
C++C K F + + HL H +P +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRP---------------------------------Y 30
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYH 259
PC C K + S + KH G +P C +C K F+ S+++ H
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTG 32
H G K ++C C KAF+Q NL H R HTG
Sbjct: 52 HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+KC +C K F L +HQ H +PY+CP+C ++ + L H HTG KPY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 329 ICNKVLTHRSSLISHYR 345
C K + L H R
Sbjct: 65 ECGKSFSRSDHLSRHQR 81
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 239 QPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQ 298
+P C C K F+ S++ H+++ + +KC +C K F L +HQ H +PY+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 299 CPQCPMAYKTNISLSAHLMKHTGAK 323
CP+C ++ + LS H H K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCT 272
+ C +C K +S +S+L KH + G +P C C K F+ S + H+++ + +KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 273 KCDKVFQHIQLLNRHQLVHMDTR 295
+C K F L+RHQ H + +
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNT 57
H G K Y+C +C K+F+Q +L++H R HTGEKP+ C C + F+ + R T
Sbjct: 27 HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNT 57
K Y+C +C K+F+Q NL++H R HTGEKP+ C C + F+ S +++ T
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H + HTGEKP+ C C K F + + H R H GEKP C C ++F S + +H
Sbjct: 23 HQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP--ECGKSFSRSDHLSRHQ 80
Query: 202 RTCHNK 207
RT NK
Sbjct: 81 RTHQNK 86
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CHNK 207
EKP+ C C K F + + + H R H GEKP C C ++F +S ++KH RT K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQRTHTGEK 59
Query: 208 PTVNRFPCDKCEKVYSCASSLTKHMKA 234
P + C +C K +S + L++H +
Sbjct: 60 P----YKCPECGKSFSRSDHLSRHQRT 82
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+PY+CP+C ++ + +L H HTG KPY C C K + S L H R
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H + HTGEKP+ C C K F ++ H R H+ +K
Sbjct: 51 HQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
H G K Y+C +C K+F++ +L H R H +K
Sbjct: 55 HTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 271 CTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTG--AKPYVCE 328
C C K+F+ + LNRH+L H +PY CP C + +K +S H+ H G KPY+C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 329 ICNKVLTHRSSLISHYR 345
C K + L H +
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 142 HLKRH----TGEKPHTCELCSKGFLSAESYKCHLRRHKGE--KPVTCTFENCTETFVESW 195
HL RH +GEKP++C +C F + H+R H G KP C ++C + F
Sbjct: 22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPD 79
Query: 196 AMRKHVRTCHNKPT 209
+ H++ H+ P+
Sbjct: 80 HLNGHIKQVHSGPS 93
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHN 206
+G CE+C K F H H GEKP +C C F M HVR+ H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRS-HD 59
Query: 207 KPTVNRFPCDKCEKVYSCASSLTKHMK 233
+ C C K +S L H+K
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFK---C 271
C+ C K++ L +H + G +P SC +C F + YH +S H+ + K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYIC 68
Query: 272 TKCDKVFQHIQLLNRH 287
C K F LN H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGE--KPFTCNICSRKFT 46
H G K Y C C F +K + H R H G KP+ C C + F+
Sbjct: 30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
G C C K F +L H H+GEKP++C +C +F
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF 45
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 246 CHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC--PQCP 303
C K F S++ H + H + C +C K F L RHQLVH +P+QC C
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 304 MAYKTNISLSAHLMKHTGAKPYVC--EICNKVLTHRSSLISH 343
+ + +L H+ HTG +PYVC + CNK ++L SH
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
HL H G + H C C K F+ + K H H GEKP CTFE C + F + +R HV
Sbjct: 26 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84
Query: 202 RT-CHNKPTVNRFPCDKCEKVYSCASSLTKHM 232
R ++P V P D C K ++ +++L H+
Sbjct: 85 RIHTGDRPYV--CPFDGCNKKFAQSTNLKSHI 114
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 140 KLHLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAM 197
K H HTGEKP C E C K F + + H+R H G++P C F+ C + F +S +
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110
Query: 198 RKHVRT 203
+ H+ T
Sbjct: 111 KSHILT 116
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 32/148 (21%)
Query: 178 KPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLG 237
+ + C + CT+ F ++ AMRKH+ T + P V+ C +C K + +S L +H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT--HGPRVH--VCAECGKAFVESSKLKRHQLVHTG 59
Query: 238 RQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPY 297
+P C C K F L H +H RPY
Sbjct: 60 EKPFQCTF--------------------------EGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 298 QCP--QCPMAYKTNISLSAHLMKHTGAK 323
CP C + + +L +H++ H AK
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTC--NICSRKFTTYSQVRRSSNT 57
H G K +QC+ C K F+ NL+ H RIHTG++P+ C + C++KF + ++ T
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 58 SAR 60
A+
Sbjct: 117 HAK 119
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVR 52
G + + C++C KAF + LK H +HTGEKPF C C ++F+ +R
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47
H G K +QC C + F+Q+ +L H R HTGEKPF C+IC RKF T
Sbjct: 29 HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFAT 74
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L+ H +H +P+QC C + SL+AH+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQV 51
C + F+QK NL H RIHTG+KPF C IC R F+ + +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL 50
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F + + H+R KP F C C + +S +SL H++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP----FQCRICMRNFSQQASLNAHIRTH 57
Query: 236 LGRQPVSCDICHKEF 250
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKF 72
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S ++L H++ G++P C IC + F+ +S+ H ++ + F C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F + RH +H+
Sbjct: 68 CGRKFATLHTRTRHTKIHL 86
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F S H+R H GEKP C C F H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI--CGRKFATL-----HT 77
Query: 202 RTCHNK 207
RT H K
Sbjct: 78 RTRHTK 83
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + +L H+ HTG KP+ C IC + + ++SL +H R
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F + H+R H G+KP C C F + ++ H+RT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + T+H K L
Sbjct: 60 EKP----FACDICGRKFATLHTRTRHTKIHL 86
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H++ HTGEKP C++C + F + + H + H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 265 NNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
++++ C +C K F H +RH +H+ RPY C C +K L H+ HTG KP
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 325 YVCEICNKVLTHRSSLISH 343
Y C IC K R S H
Sbjct: 66 YECNICAKRFMWRDSFHRH 84
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
H G++ Y C C K F K +L H +IHTG KP+ CNIC+++F
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
G K Y C QC K+F K H +H G +P+ C +C +KF
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF 47
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCT 272
+PC +C K ++ S +HM LG +P C +C K+F ++ H + + ++C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 273 KCDKVFQHIQLLNRH 287
C K F +RH
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H+ H G +P+ C +C K F H++ H G KP C C + F+ + +HV
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHV 85
Query: 202 RTC 204
+C
Sbjct: 86 TSC 88
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%)
Query: 246 CHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMA 305
C K FTH S H + C C K F+ L H +H +PY+C C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 306 YKTNISLSAHL 316
+ S H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 297 YQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
Y C QC ++ H+ H G +PY C +C K + L+ H +
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47
H G K +QC C + F+Q L +H R HTGEKPF C+IC RKF T
Sbjct: 29 HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFAT 74
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L+ H +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQV 51
C + F+QK NL H RIHTG+KPF C IC R F+ ++ +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGL 50
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F + + H+R KP F C C + +S + L +H++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP----FQCRICMRNFSQHTGLNQHIRTH 57
Query: 236 LGRQPVSCDICHKEF 250
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKF 72
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S ++L H++ G++P C IC + F+ + + H ++ + F C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F + +RH +H+
Sbjct: 68 CGRKFATLHTRDRHTKIHL 86
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F + H+R H G+KP C C F + + +H+RT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 60 EKP----FACDICGRKFATLHTRDRHTKIHL 86
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F H+R H GEKP C C F +H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI--CGRKFATLHTRDRHT 82
Query: 202 R 202
+
Sbjct: 83 K 83
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + +L H+ HTG KP+ C IC + + + L H R
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 136 YLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
+ G H++ HTGEKP C++C + F + + H + H +K
Sbjct: 47 HTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 157 CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCD 216
C+K + + H R+H GEKP C F++C F S +++H R V F C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR---RHTGVKPFQCK 70
Query: 217 KCEKVYSCASSLTKHMKARLGRQPVSCDI--CHKEFTHPSSVLYH 259
C++ +S + L H + G +P SC C K+F ++ H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 140 KLHLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAM 197
++H ++HTGEKP+ C+ C + F ++ K H RRH G KP C + C F S +
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHL 82
Query: 198 RKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKH 231
+ H RT KP R+P C+K ++ + L +H
Sbjct: 83 KTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRH 115
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 44/129 (34%), Gaps = 28/129 (21%)
Query: 218 CEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKV 277
C K Y S L H + G +P CD C++
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDF--------------------------KDCERR 47
Query: 278 FQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEI--CNKVLT 335
F L RHQ H +P+QC C + + L H HTG KP+ C C K
Sbjct: 48 FSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Query: 336 HRSSLISHY 344
L+ H+
Sbjct: 108 RSDELVRHH 116
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRRSSN 56
H G+K +QC C + F++ +LK H R HTGEKPF+C C +KF ++ R N
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNT 57
H G K YQC C + F++ LK H R HTG KPF C C RKF+ ++ + T
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICN 331
C+K + + L H H +PYQC C + + L H +HTG KP+ C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 332 KVLTHRSSLISHYR 345
+ + L +H R
Sbjct: 74 RKFSRSDHLKTHTR 87
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
C K + + +L+ H R HTGEKP+ C+ C R+F+ Q++R
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKR 56
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARN 61
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R + R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F S + +H+R KP F C C + +S + LT H++
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 236 LGRQPVSCDICHKEFT 251
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKFA 73
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F ++ H+R H GEKP C C F S ++H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHT 82
Query: 202 R 202
+
Sbjct: 83 K 83
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S ++ LT+H++ G++P C IC + F+ + H ++ + F C
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F RH +H+
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ Y C C + F++ +L H RIHTG+KPF C IC R F+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFS 45
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + L+ H+ HTG KP+ C IC + + L +H R
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F + H+R H G+KP C C F S + H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 60 EKP----FACDICGRKFARSDERKRHTKIHL 86
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H++ HTGEKP C++C + F ++ K H + H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 240 PVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
P C++C K F+ + H + + +KC CD LN+H +H D RP++C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 300 PQCPMAYKTNISLSAHLMKHTG 321
CP A + + L+ HL HTG
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 270 KCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEI 329
KC C K F L H H +PY+C C A + SL+ HL H+ +P+ C+I
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 330 CNKVLTHRSSLISHYR 345
C + S L H R
Sbjct: 70 CPYASRNSSQLTVHLR 85
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQV 51
H G+K Y+C C A +L +H RIH+ E+PF C IC SQ+
Sbjct: 31 HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 151 PHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTV 210
PH CE+C K F + K H+R H G KP C + C +S ++ KH+R ++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDE--- 62
Query: 211 NRFPCDKCEKVYSCASSLTKHMKARLG 237
F C C +S LT H+++ G
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
++C C K F++K LK H R HTG KP+ C C S + +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNK 54
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
P++C C + L H+ HTG KPY C+ C+ SSL H R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
K H++ HTG KP+ C+ C + S HLR H E+P C C S +
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQLTV 82
Query: 200 HVRT 203
H+R+
Sbjct: 83 HLRS 86
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGE 177
HL+ H+ E+P C++C ++ HLR H G+
Sbjct: 55 HLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARN 61
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R + R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F S + +H+R KP F C C + +S + LT H++
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 236 LGRQPVSCDICHKEFT 251
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKFA 73
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F ++ H+R H GEKP C C F S ++H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHT 82
Query: 202 R 202
+
Sbjct: 83 K 83
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S ++ LT+H++ G++P C IC + F+ + H ++ + F C
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F RH +H+
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ Y C C + F++ L H RIHTG+KPF C IC R F+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFS 45
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + L+ H+ HTG KP+ C IC + + L +H R
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F + H+R H G+KP C C F S + H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 60 EKP----FACDICGRKFARSDERKRHTKIHL 86
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H++ HTGEKP C++C + F ++ K H + H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSAR 60
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R + R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F S + +H+R KP F C C + +S + LT H++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 236 LGRQPVSCDICHKEFT 251
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKFA 73
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F ++ H+R H GEKP C C F S ++H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHT 82
Query: 202 R 202
+
Sbjct: 83 K 83
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S + LT+H++ G++P C IC + F+ + H ++ + F C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F RH +H+
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ Y C C + F++ L H RIHTG+KPF C IC R F+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 45
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + L+ H+ HTG KP+ C IC + + L +H R
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F ++ H+R H G+KP C C F S + H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 60 EKP----FACDICGRKFARSDERKRHTKIHL 86
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H++ HTGEKP C++C + F ++ K H + H
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARN 61
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R + R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F S + +H+R KP F C C + +S + LT H++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 236 LGRQPVSCDICHKEFT 251
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKFA 73
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F ++ H+R H GEKP C C F S ++H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHT 82
Query: 202 R 202
+
Sbjct: 83 K 83
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S + LT+H++ G++P C IC + F+ + H ++ + F C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F RH +H+
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ Y C C + F++ L H RIHTG+KPF C IC R F+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 45
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + L+ H+ HTG KP+ C IC + + L +H R
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F ++ H+R H G+KP C C F S + H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 60 EKP----FACDICGRKFARSDERKRHTKIHL 86
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H++ HTGEKP C++C + F ++ K H + H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F +S + +H+R KP F C C + +S + LT H++
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 236 LGRQPVSCDICHKEFT 251
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKFA 73
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S +S+LT+H++ G++P C IC + F+ + H ++ + F C
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F RH +H+
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F ++ H+R H GEKP C C F S ++H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHT 82
Query: 202 R 202
+
Sbjct: 83 K 83
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ Y C C + F+ NL H RIHTG+KPF C IC R F+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFS 45
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + +L+ H+ HTG KP+ C IC + + L +H R
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F + + H+R H G+KP C C F S + H+RT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 60 EKP----FACDICGRKFARSDERKRHTKIHL 86
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H++ HTGEKP C++C + F ++ K H + H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARN 61
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R + R
Sbjct: 28 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F S + +H+R KP F C C + +S + LT H++
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 56
Query: 236 LGRQPVSCDICHKEFT 251
G +P +CDIC ++F
Sbjct: 57 TGEKPFACDICGRKFA 72
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F ++ H+R H GEKP C C F S ++H
Sbjct: 24 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHT 81
Query: 202 R 202
+
Sbjct: 82 K 82
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S + LT+H++ G++P C IC + F+ + H ++ + F C
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F RH +H+
Sbjct: 67 CGRKFARSDERKRHTKIHL 85
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ Y C C + F++ L H RIHTG+KPF C IC R F+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 44
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + L+ H+ HTG KP+ C IC + + L +H R
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F ++ H+R H G+KP C C F S + H+RT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 58
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 59 EKP----FACDICGRKFARSDERKRHTKIHL 85
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H++ HTGEKP C++C + F ++ K H + H
Sbjct: 52 HIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARN 61
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R + R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKAR 235
E+P C E+C F +S ++ +H+R KP F C C + +S + LT H++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 236 LGRQPVSCDICHKEFT 251
G +P +CDIC ++F
Sbjct: 58 TGEKPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
C + F+Q G+L H RIHTG+KPF C IC R F+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS 45
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK 273
P + C++ +S + SLT+H++ G++P C IC + F+ + H ++ + F C
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 274 CDKVFQHIQLLNRHQLVHM 292
C + F RH +H+
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG+KP C +C + F ++ H+R H GEKP C C F S ++H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHT 82
Query: 202 R 202
+
Sbjct: 83 K 83
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + SL+ H+ HTG KP+ C IC + + L +H R
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 149 EKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CH 205
E+P+ C E C + F + S H+R H G+KP C C F S + H+RT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
KP F CD C + ++ + +H K L
Sbjct: 60 EKP----FACDICGRKFARSDERKRHTKIHL 86
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H++ HTGEKP C++C + F ++ K H + H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 142 HLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
H++ HTGEKP C C K F +E+ K H R H GEKP C FE C F S +K
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 200 HV 201
H+
Sbjct: 141 HM 142
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
H G K + C C K F + NLK H R HTGEKPF C C R+F S ++
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSL 228
H+R H GEKP C F C + F S ++ H RT KP F + C++ ++ +S
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF--EGCDRRFANSSDR 138
Query: 229 TKHM 232
KHM
Sbjct: 139 KKHM 142
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 233 KARLGRQPVSCD----ICHKEFTHPSS--VLYHKQSIHNNEIFKCTKCDKVFQHIQLLNR 286
+A+L R SCD H+ TH + V +Q+ H +C + K F+ L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 287 HQLVHMDTRPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEI--CNKVLTHRSSLIS 342
H VH +P+ CP C + + +L H HTG KP+ CE C++ + S
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 343 H 343
H
Sbjct: 141 H 141
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQ---------CPQCPMAYKTNISLSAHLMKHTGAKP 324
CD+ F + L H + P Q CP+ ++K L H+ HTG KP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 325 YVCEI--CNKVLTHRSSLISHYR 345
+ C C K+ +L H R
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKR 113
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
+C + K+F K L H R+HTGEKPF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPC 93
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 140 KLHLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEK 178
K+H + HTGEKP CE C + F ++ K H+ H +K
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 181 TCTFENC---TETFVESWAMRKHVRT-CHNKPTVNRFPCD--KCEKVYSCASSLTKHMKA 234
C +E C ++F + + H+R KP FPC C K+++ + +L H +
Sbjct: 59 VCYWEECPREGKSFKAKYKLVNHIRVHTGEKP----FPCPFPGCGKIFARSENLKIHKRT 114
Query: 235 RLGRQPVSCDI--CHKEFTHPSSVLYH 259
G +P C+ C + F + S H
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKH 141
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 142 HLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
HL +HTGEKP C E C KGF S H H GEK TC + C F M+K
Sbjct: 33 HLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKK 92
Query: 200 HVRTCHN-KPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSC--DICHKEFTHPSSV 256
H HN K V + C K + + L H + + P C + C K F+ PS +
Sbjct: 93 HFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRL 152
Query: 257 LYHKQ 261
H++
Sbjct: 153 KRHEK 157
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 59/173 (34%), Gaps = 39/173 (22%)
Query: 157 CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCD 216
C + + HL +H GEKP C E
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEG------------------------------ 49
Query: 217 KCEKVYSCASSLTKHMKARLGRQPVSCDI--CHKEFTHPSSVLYHKQSIHNNEI--FKC- 271
CEK ++ LT+H G + +CD C FT +++ H HN +I + C
Sbjct: 50 -CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCH 108
Query: 272 -TKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAYKTNISLSAHLMKHTG 321
C K F+ L HQ H PY+CP C + L H H G
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 301 QCPMAYKTNISLSAHLMKHTGAKPYVC--EICNKVLTHRSSLISH 343
C AY N L AHL KHTG KP+ C E C K T L H
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 6 KQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTC--NICSRKFTTYSQVRRSSNT 57
K+Y CS C A+N+ L+ H HTGEKPF C C + FT+ + R S T
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRRSSN 56
H G K + C + C K F +L H HTGEK FTC+ C +FTT + +++ N
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 11 SQCPKAFNQKGNLKEHFRIHTGEKPFTC--NICSRKFTTYSQVRRSSNTSA 59
C KAF + LK H HT + P+ C C ++F+ S+++R A
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 152 HTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPT 209
HTC+ C K + + K HLR H GEKP C ++ C F S + +H R K T
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHT 62
Query: 210 VNR-FPCDKCEKVYSCASSLTKHMK 233
+R F C KC++ +S + L HMK
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAYKTNISLSAHLMKHTGAKPYVCEICN 331
C K + L H H +PY C C + + L+ H KHTG +P+ C+ C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 332 KVLTHRSSLISH 343
+ + L H
Sbjct: 74 RAFSRSDHLALH 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G K Y C C F + L H+R HTG +PF C C R F+
Sbjct: 31 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 77
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 26/102 (25%)
Query: 218 CEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKV 277
C K Y+ +S L H++ G +P CD C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDW--------------------------DGCGWK 47
Query: 278 FQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
F L RH H RP+QC +C A+ + L+ H+ +H
Sbjct: 48 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 140 KLHLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVES 194
K HL+ HTGEKP+ C+ C F ++ H R+H G +P C + C F S
Sbjct: 25 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRS 79
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 SQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
+ C K + + +LK H R HTGEKP+ C+ C KF ++ R
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTR 56
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H ++HTG +P C+ C + F ++ H++RH
Sbjct: 57 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 152 HTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPT 209
HTC+ C K + + K HLR H GEKP C ++ C F S + +H R K T
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHT 61
Query: 210 VNR-FPCDKCEKVYSCASSLTKHMK 233
+R F C KC++ +S + L HMK
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAYKTNISLSAHLMKHTGAKPYVCEICN 331
C K + L H H +PY C C + + L+ H KHTG +P+ C+ C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 332 KVLTHRSSLISH 343
+ + L H
Sbjct: 73 RAFSRSDHLALH 84
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G K Y C C F + L H+R HTG +PF C C R F+
Sbjct: 30 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 26/102 (25%)
Query: 218 CEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKV 277
C K Y+ +S L H++ G +P CD C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDW--------------------------DGCGWK 46
Query: 278 FQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
F L RH H RP+QC +C A+ + L+ H+ +H
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 140 KLHLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVES 194
K HL+ HTGEKP+ C+ C F ++ H R+H G +P C + C F S
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRS 78
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 SQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
+ C K + + +LK H R HTGEKP+ C+ C KF ++ R
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTR 55
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H ++HTG +P C+ C + F ++ H++RH
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 49
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPT 209
KP C +C + F ++ H+R H GEKP C C F S ++H H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQHILPI 59
Query: 210 VNRFPCDKCEKVYS 223
+ DK E++ S
Sbjct: 60 LE----DKVEELLS 69
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332
+P+QC C + + L+ H+ HTG KP+ C+IC +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 39
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIH 264
F C C + +S + LT H++ G +P +CDIC ++F H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFV 192
H++ HTGEKP C++C + F ++ K RH+ + + E+ E +
Sbjct: 22 HIRTHTGEKPFACDICGRKFARSDERK----RHRDIQHILPILEDKVEELL 68
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
G V C CHK+F + H + + F+C KC K + + L H+ + R
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 297 YQ---CPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
Q C C ++ + L H++ HTG PY C C++ + L SH
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKH-VRTCH 205
+G C C K FLS K H R+H GEKP C C + + + +H R C
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCM 60
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHN 265
N+ + F C C++ + L HM + G P C C ++F + H +H+
Sbjct: 61 NR-SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 266 N 266
Sbjct: 120 G 120
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSI---HNNEIFKC 271
C C K + L H + G +P C C K + ++L H+ + ++F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 272 TKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK-HTG 321
+ C + F+ L H + H PY+C C + L +H++K H+G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
+ CS C + F ++ L+ H HTGE P+ C+ CS++F
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSR 43
G +C C K F K LK H R HTGEKPF C C +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGK 43
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFR---IHTGEKPFTCNICSRKFTTYSQVR 52
H G K ++C +C K + +K NL EH ++ E+ FTC++C F ++R
Sbjct: 30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR 83
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHL 171
+LH+ HTGE P+ C CS+ F+ + + H+
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHF-RIHTG 32
H G Y+CS C + F QK +L+ H ++H+G
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 293 DTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ R Y+C +C ++ + LS H HTG KPY C+ C K RS LI H+R
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQV 51
++Y+C +C K+F+ +L +H R HTGEKP+ C+ C + F S +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+KC +C K F H L++H+ H +PY+C +C A+ L H HTG+ P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 212 RFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYH 259
R+ CD+C K +S +S L+KH + G +P CD C K F S ++ H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
H G K Y+C +C KAF Q+ +L H R+HTG P
Sbjct: 41 HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 238 RQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
R+ CD C K F+H S + H+++ + +KC +C K F L H VH + P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVT 181
H + HTGEKP+ C+ C K F+ H R H G P +
Sbjct: 37 HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 154 CELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVE 193
C+ C K F + H R H GEKP C + C + F++
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQ 58
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 185 ENCTETFVESWAMRKHVRT-CHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVS 242
+ C ++F S + KH RT KP + CD+C K + S L H + G P S
Sbjct: 22 DECGKSFSHSSDLSKHRRTHTGEKP----YKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVR 52
K Y+C +C +F KGNL H +HTGEKP+ CNIC +F + ++
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+PY+C +C +++ +L++H HTG KPY C IC ++L +H R
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
H G K Y+C+ C FN+ NLK H RIH+GEKP
Sbjct: 40 HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 266 NEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
++ +KC +C F++ L H+ VH +PY+C C + +L H H+G KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
HTGEKP+ C +C F + K H R H GEKP
Sbjct: 40 HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ CD+C+ + +L H G +P C+IC +F P+++ H + IH+ E
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGE 71
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 239 QPVSCDICHKEFTHPSSVLYHKQSIHNNE-IFKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+P CD C F + ++ HK ++H E ++C C F L H +H +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVR 202
+KP+ C+ C F + H H GEKP C C F ++ H R
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTR 66
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 142 HLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
HL +HTGEKP C E C KGF S H H GEK TC + C F M+K
Sbjct: 24 HLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKK 83
Query: 200 HVRTCHN 206
H HN
Sbjct: 84 HFNRFHN 90
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 178 KPVTCTFENCTETFVESWAMRKHV-RTCHNKPTVNRFPC--DKCEKVYSCASSLTKHMKA 234
K C+F +C + ++W ++ H+ + KP FPC + CEK ++ LT+H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKP----FPCKEEGCEKGFTSLHHLTRHSLT 57
Query: 235 RLGRQPVSCDI--CHKEFTHPSSVLYHKQSIHN 265
G + +CD C FT +++ H HN
Sbjct: 58 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 300 PQCPMAYKTNISLSAHLMKHTGAKPYVC--EICNKVLTHRSSLISH 343
C AY N L AHL KHTG KP+ C E C K T L H
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 6 KQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTC--NICSRKFTTYSQVRRSSNT 57
K+Y CS C A+N+ L+ H HTGEKPF C C + FT+ + R S T
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 57
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRRSSN 56
H G K + C + C K F +L H HTGEK FTC+ C +FTT + +++ N
Sbjct: 28 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 86
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 157 CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCD 216
C + + HL +H GEKP C E C + F + +H T F CD
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT---HTGEKNFTCD 67
Query: 217 K--CEKVYSCASSLTKHM 232
C+ ++ +++ KH
Sbjct: 68 SDGCDLRFTTKANMKKHF 85
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAYKTNISLSAHLMKHTGAKPYVCEI-- 329
C + L H H +P+ C + C + + L+ H + HTG K + C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 330 CNKVLTHRSSLISHY 344
C+ T ++++ H+
Sbjct: 71 CDLRFTTKANMKKHF 85
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 152 HTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPT 209
H C+ C+K + + K HLR H GEKP CT+E C F S + +H R
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR---KHTG 72
Query: 210 VNRFPCDKCEKVYSCASSLTKHMK 233
F C C + +S + L HMK
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMK 96
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQC--PQCPMAYKTNISLSAHLMKHTGAKPYVCEICN 331
C KV+ L H H +PY+C C + + L+ H KHTGAKP+ C +CN
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 332 KVLTHRSSLISHYR 345
+ + L H +
Sbjct: 83 RSFSRSDHLALHMK 96
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G K Y+C+ C F + L H+R HTG KPF C +C+R F+
Sbjct: 40 HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 140 KLHLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAM 197
K HL+ HTGEKP+ C E C F ++ H R+H G KP C C +F S +
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHL 91
Query: 198 RKHVR 202
H++
Sbjct: 92 ALHMK 96
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 243 CDI--CHKEFTHPSSVLYHKQSIHNNEIFKCT--KCDKVFQHIQLLNRHQLVHMDTRPYQ 298
CD C K +T S + H ++ + +KCT CD F L RH H +P+Q
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 299 CPQCPMAYKTNISLSAHLMKH 319
C C ++ + L+ H+ +H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 300 PQCPMAYKTNISLSAHLMKHTGAKPYVC--EICNKVLTHRSSLISHYR 345
P C Y + L AHL HTG KPY C E C+ L HYR
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
C K + + +LK H R HTGEKP+ C C +F ++ R
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 218 CEKVYSCASSLTKHMKARLGRQPVSC--DICHKEFTHPSSVLYHKQSIHNNEIFKCTKCD 275
C KVY+ +S L H++ G +P C + C F + H + + F+C C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 276 KVF---QHIQL-LNRHQ 288
+ F H+ L + RHQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHK 175
H ++HTG KP C +C++ F ++ H++RH+
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 209 TVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI 268
T F C C + ++ + +L H + +P +CDICHK F + H+ +
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDT 294
FKC +C K F + L H+ +HM T
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
F C C + F L H+ H D RPY C C A++ L H H+ KP+ C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 329 ICNKVLTHRSSLISH 343
C K +L H
Sbjct: 78 ECGKGFCQSRTLAVH 92
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 243 CDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQC 302
C C + FT ++L H+++ + + C C K F+ L H+ +H +P++C +C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 303 PMAYKTNISLSAHLMKH 319
+ + +L+ H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
H + Y C C KAF ++ +L++H IH+ EKPF C C + F
Sbjct: 40 HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVR 52
K++ C C + F + NL H R HT E+P+TC+IC + F +R
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 141 LHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKH 200
+H + HT E+P+TC++C K F + + H H EKP C + C + F +S + H
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVH 92
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+ + C C + + +L H HT +PY C+IC+K + L H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKP 208
+K C+ C + F + + H R H E+P TC + C + F +R H R H+K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDH-RYIHSKE 71
Query: 209 TVNRFPCDKCEKVYSCASSLTKH 231
F C +C K + + +L H
Sbjct: 72 --KPFKCQECGKGFCQSRTLAVH 92
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ C C +AF ++ +LK H+R HT EKP+ C +C+R FT
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 297 YQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+ C C A+ L H HT KPY C +CN+ T R LI H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI 268
F C+ C + ++ L +H ++ +P C +C++ FT ++ H Q IH+ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 153 TCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHN 206
CE+C++ F E K H R H EKP C C F + +H + H+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHS 55
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK-HTG 321
F C C + F + L RH H + +PY C C A+ L H K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 140 KLHLKRHTGEKPHTCELCSKGF 161
K H + HT EKP+ C LC++ F
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAF 40
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 243 CDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRH-QLVH 291
C++C + F + H +S N + + C C++ F LL RH Q +H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C +C KAF QK NL +H RIHTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C A+ +L+ H HTG KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F + H R H GEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQV 51
K Y C +C KAF++ L +H R+HTGEKP+ C C + F+ S +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+PY C +C A+ + L H HTG KPY C C K + S LI+H R
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHT 320
+ C +C K F +L +HQ VH +PY+C +C A+ N L H HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 238 RQPVSCDICHKEFTHPSSVLYHKQSIHNNE-IFKCTKCDKVFQHIQLLNRHQLVH 291
+P C C K F+ SS+L Q +H E +KC +C K F L HQ +H
Sbjct: 12 EKPYGCVECGKAFSR-SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNN 266
+ C +C K +S +S L +H + G +P C C K F+ S ++ H Q IH +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTS 67
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKP 208
EKP+ C C K F + H R H GEKP C C + F ++ + H R + P
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTSGP 69
Query: 209 T 209
+
Sbjct: 70 S 70
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHT 31
H G K Y+C +C KAF+Q L H RIHT
Sbjct: 37 HTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H + HTGEKP+ C C K F H R H
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 5 IKQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
++ Y C C + F++ L H RIHTG+KPF C IC R F+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 295 RPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
RPY CP C + + L+ H+ HTG KP+ C IC + + L +H R
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQS 262
P + C++ +S + LT+H++ G++P C IC + F+ + H ++
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 150 KPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
+P+ C E C + F ++ H+R H G+KP C C F S + H+RT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT 71
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H++ HTG+KP C +C + F ++ H+R H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHT 320
CD+ F L RH +H +P+QC C + + L+ H+ HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHT 31
H G K +QC C + F++ +L H R HT
Sbjct: 44 HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C QC KAF+QKG+L H R+HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C QC A+ SL H+ HTG+ P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C+ C K F S H+R H G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY C+ C K + + SLI H R
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIR 32
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 298 QCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+C C +++N L+ HL HTG KPY CE C ++SL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNIC 41
G +CS C K F L H R HTGEKP+ C C
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 270 KCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
+C+ C K F+ LN H H +PY+C C A SL HL +H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 141 LHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
+HL+ HTGEKP+ CE C S + HL RH
Sbjct: 22 IHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 148 GEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
G C C K F S HLR H GEKP C F C + ++R H+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHL 52
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIH 264
C C K + L H++ G +P C+ C +S+ YH + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 3 QGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
G+K Y CS+C KAF K L H R HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
+G KP+ C C K F S H+R H GEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 293 DTRPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY C +C A+++ L H+ HTG KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPY C C K +S LI H R
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMR 31
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K YQC++C KAF+Q L H R+HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
++C +C K F L RHQ VH +P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PYQC +C A+ L+ H HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++CS+C KAFN K NL H R HTGEKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P++C +C A+ T +L H HTG KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP C C K F + + H R H GEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
G K YQC +C K+F+Q+G+L H R+HTG P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PYQC +C ++ SL+ H HTG+ P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVT 181
+GEKP+ C+ C K F S H R H G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPY C+ C K + R SL H R
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER 31
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C K F Q +L H+RIHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C + N L+ H HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY C C KV T S L +H+R
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWR 33
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F H R H GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ Y+CS+C KAF +K L H RIHTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C KAF+Q L H RIHTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C K F L RHQ +H +P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F H R H GEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C A+ L+ H HTG KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
G + Y+C +C K+F QKG+L H RIHTG P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
R Y+C +C +++ SL+ H HTG+ P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ Y+CS+C KAF QK L H RIH GEKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
E+ + C C K F+ + H R H+GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 157 CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
C K + + K H R H GEKP +C+++ C F S + +H RT
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 5 IKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
I+ + CS C K + + +LK H R HTGEKPF+C+ C R+F ++ R
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 300 PQCPMAYKTNISLSAHLMKHTGAKPYVCEI--CNKVLTHRSSLISHYR 345
P C Y + L AH HTG KP+ C C + L H R
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C KAF + NL H +IHTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C A+ +L H HTG KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY C C K T RS+L +H +
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQK 33
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F + H + H GEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C +C KAF+Q +L +H R+HTGEKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C A+ L H HTG KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C+ C K F H R H GEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C +C KAF L+EH RIHTGEKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ CE C K F+ + H R H GEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY CE C K H S L H R
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQR 33
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY C +C A+ + L H HTG KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+ C +C K F H L HQ +H +P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
F C C K ++ L+RH+ H+ RP CP+C ++ ++ HL H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
F C+ C K Y AS L++H +A LG +P SC C K F S V H + +H N+
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQNK 58
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKP 208
E+P C C K + A H R H G +P +C C + F + + +H++ NKP
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKVHQNKP 59
Query: 209 T 209
Sbjct: 60 A 60
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
RP+ C C Y+ LS H H G +P C C K +S + H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+ + C+ C K + L H R H G +P +C C + F S+V R
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNR 50
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 239 QPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMD 293
+P C+ C K + S + H+++ C +C K F+ +NRH VH +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C +C KAF Q +L H RIHTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P++C +C A++ NI L++HL HTG KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP C+ C K F HLR H GEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C++C KAF +K L H +IHTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
F+CT+C K F L+ HQ +H +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C++C K+F QK +L H RIHTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F+ H R H GEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C C KAF QK +L +H + HTGEKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C++CSK F H + H GEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C C A+ L+ H HTG KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K ++C+ C K+F KGNL H RIHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C +C K++NQ+ +L +H R+HTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P++C +C +Y + L+ H HTG KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+CS+C KAF++ +L EH RIHTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC++C K F LN H+ +H RP
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
K Y+C++C KAFN K NL H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTG 321
+PY+C +C A+ T +L H HTG
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y CS+C KAF+ K L H R H+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F S H+R H GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY C +C A+ + L H+ H+G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K+Y+C++C K F++ L +H +IHTGEKP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF L++HQ +H +P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 212 RFPCDKCEKVYSCASSLTKHMKARLGRQP 240
R+ C++C KV+S S L++H K G +P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 297 YQCPQCPMAYKTNISLSAHLMKHTGAKP 324
Y+C +C + N LS H HTG KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K +QC +C + F K +L +H RIHTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ Y C+ C KAF + NL +H +IHTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
+PY+C +C K T RS+LI H +
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQK 33
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
E+P+ C +C K F + H + H GEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C++C K F Q +L H RIHTGEKP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 267 EIFKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
++FKC +C K F L HQ +H +P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQP 240
F C++C+K ++ +SSLT H + G +P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C++C K F+QK L H R HTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F H R H GEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY C +C + LSAH HTG KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C +C K +N K NL H ++HTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ CE C KG+ S + H + H GE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C Y + +L H HTG +P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K +QC +C K F Q +L H R+HTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P+QC +C + N L +H HTG KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP CE C K F H R H GEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 144 KRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTF--ENCTETFVESWAMRKHV 201
+ HTGEKP+ C C K F + H +R+ V F C +TF M +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 202 RTCHNKPTV 210
C V
Sbjct: 68 DNCAGPDGV 76
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHF-RIHTGE---KPFTCNICSRKFTTYSQVRRSSNT 57
H G K Y CS C K F QK L HF R H F C+ C + FT + + R ++
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 58 SA 59
A
Sbjct: 70 CA 71
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 172 RRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTV-NRFPCDKCEKVYSCASSLTK 230
R H GEKP C+ +C +TF + + H + H+ V F C KC K ++ +++ +
Sbjct: 8 RTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 231 HMKARLGRQPV 241
H G V
Sbjct: 66 HADNCAGPDGV 76
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 290 VHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAK----PYVCEICNKVLTHRSSLISH 343
H +PY C C ++ L H ++ +VC C K T R+++ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
HTG KPY C C+K + L H++
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFK 36
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 21 GNLKEHFRIHTGEKPFTCNICSRKF 45
G+ R HTGEKP+ C+ C + F
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTF 25
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+C +C K F GNLK H RIH+GEK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C KAF NL H IHTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C A++ + +L+ H + HTG KP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C K F+ L HQ++H +P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+K Y C++C KAF+ +L H IHTGEKP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY C +C A+ SL+ H + HTG KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C+QC KAF+ + +L H IHTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C QC A+ SL+ H HTG KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+CS C K+F +K L H RIHTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F+ H R H GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C K F Q +L H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF L RH+ +H +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C + N L+ H HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C C KAF+ +L +H R+H+GEKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C++C K F S H R H GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY C++C K +H +SL H R
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQR 33
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 238 RQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+P CD+C K F+H +S+ H Q +H+ E
Sbjct: 10 EKPYECDVCRKAFSHHASLTQH-QRVHSGE 38
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C C A+ + SL+ H H+G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C K F Q +L H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF L RH+ +H +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C + N L+ H HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+CS C K+F +K L H +IHTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C +C K F H + H GEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C++C K+F+ L H RIHTGEKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP C C K F + H R H GEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P++C +C ++ + L+ H HTG KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
Y+C C K F+Q +L+ H R+HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EK + C++C K F + + H R H GEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
FKC +C K F H L++HQL+H P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
++C++C K F+ +L +H IH GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C K F Q +L H R+HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF L RH+ VH +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C + N L+ H HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C K F Q +L H RIHTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C + N L+ H HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF L HQ +H +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C C KAF L H RIHTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 149 EKPHTCELCSKGF-LSAESYKCHLRRHKGEKP 179
EKP+ C+ C K F LSAE + H R H GEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVR-HQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C C K+F Q+ L H IHTGEKP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
F+C CDK F+ LN H+++H +P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P++C C +++ +L++H M HTG KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
T EKP C+ C K F + H H GEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISH 343
T KP+ C+ C+K RS+L SH
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH 31
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+CS C KAF+ + +L H RIH+G+KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C +C K F +S H R H G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY C +C K +HR SL H R
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQR 33
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
++C+ C K F H Q L+ HQ +H +P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C C A+ SLS H H+G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+PY+CPQC A +L+ HL KHTG K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+C QC A K NL H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 271 CTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHL 316
C +C + +L +H H D RPY C C ++KT +L+ H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSA 59
+Y C +C + LK+H R HT +P+ C C+ F T + + + A
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 297 YQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
Y C +C + K L H+ HT +PY C CN + +L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K + C C KAF+ L +H RIHTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P+ C C A+ +I L+ H HTG KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ ++CS C K F Q N +H RIHTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
E+ H C C K FL A ++ H R H GEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C K F Q +L H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF L RH+ +H +P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF+H L+RHQ +H +P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C K F L H RIHTGEKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C ++ N LS H HTG KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
G Y+CS+C KAFN+K L H R H GE
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G PY C C K + LISH R
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQR 31
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+C +C K F Q G+L +H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 172 RRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKH 231
R H GEKP C C F +S M+ H+ H + V +F C C+ V + S L H
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTE-NVAKFHCPHCDTVIARKSDLGVH 64
Query: 232 MK 233
++
Sbjct: 65 LR 66
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI--FKCTKCDKVFQHIQLLNRH 287
G +P C ICH FT ++ H H + F C CD V L H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 GNLKEHFRIHTGEKPFTCNICSRKFT 46
G+ R H+GEKP+ C IC +FT
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFT 26
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+K Y CSQC K F+ K L H R HTG KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 294 TRPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY C QC + L H HTG KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
RPY+C +C A+KT SL H HTG KP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ Y+C +C KAF K +L H R HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
++P+ C C K F + S CH R H GEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ ++C++C K+F Q +L +H RIHTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
E+PH C C K F+ + H R H GEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C +C K F Q L H R+HTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP CE C K F H R H GEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+P++C +C + N L +H HTG KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
FKC +C K F L+ HQ VH +P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H H+ EK + C C K F AE H H GE+ C C ++F+ M H+
Sbjct: 41 HFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL--ACGKSFINYQFMSSHI 98
Query: 202 RTCHNK 207
++ H++
Sbjct: 99 KSVHSQ 104
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 187 CTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDIC 246
C ++V ++R+H ++PC CEKV+ A TKH G + C C
Sbjct: 28 CKRSYVCLTSLRRHFNI---HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 247 HKEFTHPSSVLYHKQSIHNNE 267
K F + + H +S+H+ +
Sbjct: 85 GKSFINYQFMSSHIKSVHSQD 105
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTR 295
GR C +C + + +S+ H +IH+ E + C C+KVF + +H++ H R
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRH-FNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 296 PYQCPQCPMAYKTNISLSAHL 316
YQC C ++ +S+H+
Sbjct: 78 RYQCLACGKSFINYQFMSSHI 98
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+ C C + + + L RH +H + Y C C + + H + HTG + Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 329 ICNKVLTHRSSLISH 343
C K + + SH
Sbjct: 83 ACGKSFINYQFMSSH 97
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIH--NNEIFK 270
+ C C++ Y C +SL +H + C C K F P + K IH ++
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF--PLAEYRTKHEIHHTGERRYQ 80
Query: 271 CTKCDKVFQHIQLLNRH 287
C C K F + Q ++ H
Sbjct: 81 CLACGKSFINYQFMSSH 97
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 3 QGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
G Y C C +++ +L+ HF IH+ EK + C C + F
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTY 48
H K+Y C C K F +H HTGE+ + C C + F Y
Sbjct: 45 HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY 91
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+C C K +N++ NL H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
EKP+ CE C KG+ + H R H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+K Y C C + F G L+ H RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+C +C KAF + NL H IHTGEK
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+PY+C +C A++T +L+ H + HTG K
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ CS+C K F K NL H +IHTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
F C++C KVF H L HQ +H RP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 324 PYVCEICNKVLTHRSSLISHYR 345
P++C C KV TH+++LI H +
Sbjct: 12 PFICSECGKVFTHKTNLIIHQK 33
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ Y+CSQC K+F+ K L H R+HT EKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
G K Y C++C K F+ K L H RIHTGEK
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
+GEKP+ C C K F S H R H GEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPY C C K + +S LI H R
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQR 31
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
G K Y C++C KAF K L H RIHTGE
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPYVC C K +S LI H R
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHER 31
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C +C K F+++ L H ++HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP C C KGF + H + H GEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C C K+F +L H RIHTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C++C K F S H R H GEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 239 QPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+P CD+CHK F + SS+ H Q IH E
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVH-QRIHTGE 38
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C C +++ SL+ H HTG KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
G K C++C K F Q L +H RIH+GEKP
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 271 CTKCDKVFQHIQLLNRHQLVHMDTRP 296
C +C K F+ L++HQ +H +P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
+G+KP C C K F + H R H GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 274 CDKVFQHIQLLNRHQ-LVHMDTRPYQCPQ--CPMAYKTNISLSAHLMKHTGAKPYVCEI 329
C ++F + Q LN H+ H+ + + CP+ C ++ L H+ H+ + Y+CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 6 KQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNI 40
K + C + C K+FN K +LKEH ++H+ + + C
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
G K Y C +C KAF Q L H R+HTGE
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGE 177
+GEKP+ C+ C K F + H R H GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPYVC+ C K T S L H R
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRR 31
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 3 QGIKQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
G K Y C++C KAF +K + H RIHTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPYVC C K +S I+H R
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHER 31
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGE 177
+GEKP+ C C K F+ + H R H GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
Y+C +C KAF++K L H R H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C++C KAF + NL +H +IHT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY+C C K T RS+LI H +
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQK 33
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFR-IHTGEKP 35
K Y+C +C KAF Q +L H+R HTGEKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K YQCS+C K+F+ L +H+ HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PYQC +C ++ + L+ H + HT KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C +C K F + +L H IHTGEKP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
+KC +C KVF+ L RHQL+H +P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C ++ N L+ H + HTG KP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP CE C KGF + H R H GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C +C KAF + +H R+HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C A+ N S + H HTG +P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
G K Y+C+ C KAF K L H R HTGE
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPY C C K +S LI H R
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQR 31
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 9 QCSQCPKAFNQKGNLKEHFRIHTGEK 34
QC C KAF Q +L H R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEK 178
KP C +C K F A S H+R+H GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+P QC C A+ SL AH+ +HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KP C +C K T SSLI+H R
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVR 23
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
K+++C C K FNQ GNLK H +IH +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 271 CTKCDKVFQHIQLLNRHQLVHMDTRPY 297
C C K+F+ + LNRH+L H +PY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C++C KAF + +L H H+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C A++ SL+ H H+G KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C C K F + S H H GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 152 HTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVN 211
H C +C + F S + + HLR + C + C TF S + +H+ CH P+ N
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKY--CPATFYSSPGLTRHINKCH--PSEN 84
Query: 212 R 212
R
Sbjct: 85 R 85
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 243 CDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRH 287
C +C + F + H + +H ++F C C F L RH
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
G K Y C++C KAF K L H +HTG KP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 31 TGEKPFTCNICSRKFTTYSQV 51
+GEKP++CN C + FT SQ+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQL 26
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISH 343
+G KPY C C K T +S LI H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K +QC C + F++ +LK H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C +C K+F++ L +H R+H+GEKP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
+K Y C++C KAF K L H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ CE+C F ++ K HLR H G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C C F LK H RIHTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
G K ++CS+C K F+ L H RIHTGE P
Sbjct: 7 GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y C +C K+F L +H R+H+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ C+ C K F A H R H GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+CS C KAF +K L H + HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+C +C K + ++ +L H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+PY+C +C YK + L H HTG K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C +C K F + +L H +HTGEKP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKP+ CE C KGF+ H H GEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C +C + L H M HTG KP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISH 343
+G KPYVC C K T +S LI H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVH 29
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTG 32
G K Y CS C KAF K L H IHTG
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTG 32
++ Y CS C K F+ K ++ H+R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+CS C K+F K L+ H + HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C C KAF +L +H +H+GE+P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
G K ++C+ C KAF+ K L H RIHTGE
Sbjct: 7 GEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C +C F+Q +L+ H +H GEKP
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
K Y+CS+C KAF + L H R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C +C K+F+ L H RIHTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
EKPH C C K F H R H GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
K Y C+ C KAF +L +H R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGE 177
EKP++C +C K F+ + HLR H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K Y+C C F Q +L+ H IHTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
+PY+C C + L AH++ HTG+ P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 209 TVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHN 265
+++F C C +S + SL +H+ R C +C KEFT S L H HN
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 297 YQCPQCPMAYKTNISLSAHL--MKHTGAKPYVCEICNKVLTHRSSLISH 343
+ CP C M + +++SL H+ +HT VC +C K T S + H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTK----VCPVCKKEFTSTDSALDH 119
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 3 QGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47
+ I Q+ C C F+ +LK+H R E C +C ++FT+
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFTS 112
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
EK HTC+ C K F + + H R H GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+ ++C++C K F ++ +L H R+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+ C C +AF ++ +LK H+R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRP 296
FKC C K F LNRH +VH +P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
K ++C C K+F + L H +HT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K + C C K F K +L+ H RIHT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+ C C +AF ++ LK H+R HT EK
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFR-IHTGEKPFTCNI 40
K Y C C K F++ +L H + +HT E+P C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 270 KCTKCDKVFQHIQLLNRHQLVHMD 293
+C +C K+F+H LL HQ +H
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAG 37
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+ C C +AF ++ LK H+R HT EK
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTC--NICSRKFTTYSQVRRSSNTSA 59
C KAF + LK H HT + P+ C C ++F+ S+++R A
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 181 TCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLG--- 237
C FENC + F + ++ H + H + P + C+K +S S L +H K G
Sbjct: 3 VCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 238 RQPVSCDICHKEFT 251
++ SC K +T
Sbjct: 62 KKDDSCSFVGKTWT 75
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 213 FPCDKCEKVYSCASSLTKHMK 233
F C+KCEK +SC+ LT+H +
Sbjct: 13 FKCNKCEKTFSCSKYLTQHER 33
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTC--NICSRKFTTYSQVRRSSNTSA 59
C KAF + LK H HT + P+ C C ++F+ S+++R A
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 181 TCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLG--- 237
C FENC + F + ++ H + H + P + C+K +S S L +H K G
Sbjct: 3 VCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 238 RQPVSCDICHKEFT 251
++ SC K +T
Sbjct: 62 KKDDSCSFVGKTWT 75
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVH 291
FKC+KCD+VF L +H+ H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
K + C C K F KG LK H +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKG 176
+GEKP++C +C F + H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGA 322
+PY CP C + +K +S H+ H G+
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTG 32
K Y+C++C KAF K L H R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 20 KGNLKEHFRIHTGEKPFTCNICS 42
K L+ H RIH ++PF CN CS
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCS 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.132 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,908,303
Number of Sequences: 62578
Number of extensions: 317083
Number of successful extensions: 2478
Number of sequences better than 100.0: 200
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 1389
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)