Query psy8793
Match_columns 345
No_of_seqs 135 out of 2146
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 19:26:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074|consensus 100.0 3.3E-32 7.1E-37 241.7 7.1 113 149-263 603-732 (958)
2 KOG2462|consensus 100.0 1.1E-30 2.4E-35 205.2 5.3 132 211-344 129-263 (279)
3 KOG1074|consensus 100.0 1.6E-29 3.5E-34 224.7 3.2 79 213-291 606-691 (958)
4 KOG2462|consensus 99.9 6.3E-28 1.4E-32 189.7 6.3 130 186-317 135-264 (279)
5 KOG3608|consensus 99.9 9.3E-27 2E-31 187.8 7.9 188 152-345 178-373 (467)
6 KOG3623|consensus 99.9 2.7E-25 5.8E-30 194.9 6.4 108 152-261 211-330 (1007)
7 KOG3608|consensus 99.9 6E-25 1.3E-29 177.4 7.8 189 151-345 134-342 (467)
8 KOG3623|consensus 99.9 4.8E-23 1E-27 180.9 3.3 76 269-344 895-970 (1007)
9 KOG3576|consensus 99.7 1.2E-18 2.5E-23 130.5 0.0 110 212-321 117-237 (267)
10 KOG3576|consensus 99.6 3.4E-16 7.3E-21 117.4 2.3 107 238-344 115-232 (267)
11 PLN03086 PRLI-interacting fact 99.3 1.7E-12 3.6E-17 115.9 6.9 141 180-344 408-560 (567)
12 PLN03086 PRLI-interacting fact 99.3 1.5E-11 3.2E-16 109.9 9.0 145 152-318 408-562 (567)
13 PHA00733 hypothetical protein 99.2 1.3E-11 2.9E-16 89.8 4.6 83 238-322 38-125 (128)
14 PHA00733 hypothetical protein 99.2 5.6E-12 1.2E-16 91.8 2.3 91 253-345 25-120 (128)
15 PHA02768 hypothetical protein; 99.2 1.3E-11 2.8E-16 73.3 2.2 44 296-341 5-48 (55)
16 PHA02768 hypothetical protein; 99.0 1.9E-10 4.1E-15 68.4 2.2 43 268-312 5-47 (55)
17 KOG3993|consensus 98.9 3.1E-10 6.7E-15 95.2 -0.4 77 268-344 356-478 (500)
18 PF13465 zf-H2C2_2: Zinc-finge 98.9 1.1E-09 2.3E-14 55.7 1.7 25 311-335 1-25 (26)
19 KOG3993|consensus 98.9 3.4E-10 7.3E-15 95.0 -0.5 59 7-65 267-325 (500)
20 PF13465 zf-H2C2_2: Zinc-finge 98.8 4.1E-09 8.8E-14 53.6 1.7 25 283-307 1-25 (26)
21 PHA00616 hypothetical protein 98.7 5.5E-09 1.2E-13 59.0 1.5 33 296-328 1-33 (44)
22 PHA00616 hypothetical protein 98.6 2.2E-08 4.7E-13 56.6 1.5 38 268-305 1-38 (44)
23 PHA00732 hypothetical protein 98.5 8.9E-08 1.9E-12 63.0 3.0 48 268-321 1-49 (79)
24 PHA00732 hypothetical protein 98.5 8.9E-08 1.9E-12 63.0 2.9 43 296-344 1-44 (79)
25 PF05605 zf-Di19: Drought indu 98.2 2E-06 4.3E-11 52.6 4.3 50 268-320 2-53 (54)
26 PF05605 zf-Di19: Drought indu 98.2 5.2E-07 1.1E-11 55.2 1.6 51 7-60 2-54 (54)
27 PF00096 zf-C2H2: Zinc finger, 98.1 2.8E-06 6E-11 41.9 2.5 23 269-291 1-23 (23)
28 COG5189 SFP1 Putative transcri 98.0 3.3E-06 7.1E-11 68.8 2.2 55 4-58 346-421 (423)
29 PF00096 zf-C2H2: Zinc finger, 97.9 4E-06 8.6E-11 41.3 1.1 23 297-319 1-23 (23)
30 PF13894 zf-C2H2_4: C2H2-type 97.8 2.3E-05 5E-10 38.9 2.8 23 269-291 1-23 (24)
31 PF12756 zf-C2H2_2: C2H2 type 97.8 4.1E-06 8.8E-11 59.1 -0.1 73 242-319 1-73 (100)
32 PF13912 zf-C2H2_6: C2H2-type 97.7 2.7E-05 5.9E-10 40.0 2.0 25 268-292 1-25 (27)
33 PF12756 zf-C2H2_2: C2H2 type 97.7 3.8E-05 8.3E-10 54.0 3.0 73 214-291 1-73 (100)
34 PF13894 zf-C2H2_4: C2H2-type 97.6 3.5E-05 7.7E-10 38.2 1.4 24 297-320 1-24 (24)
35 COG5189 SFP1 Putative transcri 97.6 3.6E-05 7.8E-10 62.9 1.8 70 265-344 346-418 (423)
36 PF13912 zf-C2H2_6: C2H2-type 97.5 5.2E-05 1.1E-09 38.9 1.4 26 296-321 1-26 (27)
37 KOG2785|consensus 97.3 0.00075 1.6E-08 57.1 6.9 75 150-234 165-242 (390)
38 smart00355 ZnF_C2H2 zinc finge 97.1 0.0005 1.1E-08 34.6 2.4 21 270-290 2-22 (26)
39 KOG2231|consensus 97.0 0.0021 4.6E-08 59.3 7.4 117 152-292 100-236 (669)
40 smart00355 ZnF_C2H2 zinc finge 97.0 0.00066 1.4E-08 34.1 2.5 24 297-320 1-24 (26)
41 PF12874 zf-met: Zinc-finger o 96.9 0.00021 4.6E-09 35.8 -0.1 22 8-29 1-22 (25)
42 PF13909 zf-H2C2_5: C2H2-type 96.9 0.001 2.2E-08 32.9 2.3 22 269-291 1-22 (24)
43 PRK04860 hypothetical protein; 96.9 0.00046 9.9E-09 52.4 1.5 37 268-308 119-155 (160)
44 PF13909 zf-H2C2_5: C2H2-type 96.9 0.0005 1.1E-08 34.0 1.2 24 297-321 1-24 (24)
45 PF12874 zf-met: Zinc-finger o 96.9 0.00086 1.9E-08 33.5 2.0 22 269-290 1-22 (25)
46 PF12171 zf-C2H2_jaz: Zinc-fin 96.8 0.00076 1.6E-08 34.4 1.6 22 36-57 2-23 (27)
47 COG5048 FOG: Zn-finger [Genera 96.8 0.0021 4.7E-08 58.4 5.6 118 212-329 289-451 (467)
48 PF09237 GAGA: GAGA factor; I 96.8 0.0018 4E-08 37.6 3.1 30 266-295 22-51 (54)
49 PRK04860 hypothetical protein; 96.7 0.00083 1.8E-08 51.0 1.9 40 295-338 118-157 (160)
50 PF09237 GAGA: GAGA factor; I 96.6 0.001 2.3E-08 38.6 1.4 37 24-60 12-49 (54)
51 PF12171 zf-C2H2_jaz: Zinc-fin 96.6 0.00098 2.1E-08 34.0 1.0 21 325-345 2-22 (27)
52 KOG2482|consensus 96.5 0.021 4.6E-07 47.7 8.6 154 150-317 143-355 (423)
53 KOG2785|consensus 96.5 0.017 3.7E-07 49.3 8.0 168 151-318 3-242 (390)
54 KOG1146|consensus 96.1 0.0013 2.7E-08 64.5 -0.2 55 4-58 462-541 (1406)
55 COG5236 Uncharacterized conser 96.0 0.017 3.7E-07 48.3 5.5 129 152-290 152-303 (493)
56 KOG2231|consensus 95.9 0.015 3.3E-07 54.0 5.6 112 213-332 116-246 (669)
57 KOG2482|consensus 95.9 0.02 4.3E-07 47.9 5.6 124 162-290 180-356 (423)
58 COG5236 Uncharacterized conser 95.6 0.012 2.7E-07 49.1 3.3 134 179-321 151-306 (493)
59 KOG1146|consensus 95.4 0.0047 1E-07 60.7 0.4 127 211-340 464-634 (1406)
60 PF13913 zf-C2HC_2: zinc-finge 94.9 0.025 5.4E-07 28.1 2.0 19 270-289 4-22 (25)
61 cd00350 rubredoxin_like Rubred 94.8 0.019 4.2E-07 30.8 1.6 26 7-44 1-26 (33)
62 smart00451 ZnF_U1 U1-like zinc 94.7 0.016 3.5E-07 31.5 1.1 22 7-28 3-24 (35)
63 KOG4173|consensus 94.5 0.017 3.8E-07 44.5 1.1 79 211-292 78-171 (253)
64 COG5048 FOG: Zn-finger [Genera 94.4 0.045 9.7E-07 49.7 3.9 56 6-61 288-349 (467)
65 PF12013 DUF3505: Protein of u 94.2 0.11 2.3E-06 37.1 4.6 25 297-321 81-109 (109)
66 PF13913 zf-C2HC_2: zinc-finge 94.1 0.047 1E-06 27.1 1.9 21 297-318 3-23 (25)
67 smart00451 ZnF_U1 U1-like zinc 94.0 0.046 9.9E-07 29.7 2.0 22 268-289 3-24 (35)
68 cd00350 rubredoxin_like Rubred 93.7 0.05 1.1E-06 29.1 1.7 11 269-279 2-12 (33)
69 KOG4173|consensus 93.7 0.024 5.2E-07 43.8 0.6 78 240-320 79-170 (253)
70 TIGR00622 ssl1 transcription f 92.9 0.17 3.8E-06 35.6 3.8 19 212-230 15-33 (112)
71 PF12013 DUF3505: Protein of u 92.0 0.28 6E-06 34.9 4.1 82 211-293 10-109 (109)
72 KOG2893|consensus 91.9 0.045 9.8E-07 43.4 -0.1 45 271-319 13-58 (341)
73 PF09986 DUF2225: Uncharacteri 91.0 0.072 1.6E-06 43.0 0.3 44 5-48 3-61 (214)
74 cd00729 rubredoxin_SM Rubredox 90.8 0.16 3.4E-06 27.4 1.3 26 7-44 2-27 (34)
75 COG4049 Uncharacterized protei 90.0 0.085 1.8E-06 31.3 -0.1 28 33-60 15-42 (65)
76 KOG2186|consensus 89.9 0.14 3E-06 41.2 0.9 47 8-57 4-50 (276)
77 PF10571 UPF0547: Uncharacteri 89.7 0.18 3.8E-06 25.3 0.9 9 298-306 16-24 (26)
78 TIGR00622 ssl1 transcription f 89.7 0.6 1.3E-05 32.9 3.8 103 152-291 2-104 (112)
79 KOG2893|consensus 89.5 0.12 2.6E-06 41.0 0.3 49 9-61 12-60 (341)
80 COG4049 Uncharacterized protei 88.6 0.19 4E-06 29.9 0.6 23 266-288 15-37 (65)
81 TIGR00373 conserved hypothetic 88.3 0.7 1.5E-05 35.3 3.7 40 258-306 99-138 (158)
82 PRK06266 transcription initiat 86.5 0.85 1.8E-05 35.6 3.4 39 260-307 109-147 (178)
83 PF09538 FYDLN_acid: Protein o 86.2 0.68 1.5E-05 32.7 2.4 30 8-48 10-39 (108)
84 TIGR02098 MJ0042_CXXC MJ0042 f 84.9 0.62 1.3E-05 25.7 1.4 9 325-333 26-34 (38)
85 PF13719 zinc_ribbon_5: zinc-r 84.6 0.74 1.6E-05 25.3 1.6 8 271-278 5-12 (37)
86 smart00659 RPOLCX RNA polymera 84.5 0.71 1.5E-05 26.6 1.5 11 269-279 3-13 (44)
87 PF09986 DUF2225: Uncharacteri 84.0 0.2 4.3E-06 40.5 -1.2 22 267-288 4-25 (214)
88 KOG2186|consensus 83.8 0.69 1.5E-05 37.4 1.7 44 241-287 4-47 (276)
89 smart00531 TFIIE Transcription 83.6 1.4 3.1E-05 33.2 3.3 15 266-280 97-111 (147)
90 KOG2807|consensus 83.5 2.6 5.7E-05 35.6 5.0 25 295-319 344-368 (378)
91 smart00734 ZnF_Rad18 Rad18-lik 83.4 0.89 1.9E-05 22.8 1.4 21 8-29 2-22 (26)
92 COG1592 Rubrerythrin [Energy p 82.8 0.98 2.1E-05 34.5 2.1 25 266-303 132-156 (166)
93 PRK00398 rpoP DNA-directed RNA 82.5 0.55 1.2E-05 27.3 0.6 31 6-46 2-32 (46)
94 PRK00464 nrdR transcriptional 82.0 0.48 1E-05 35.9 0.2 45 8-55 1-48 (154)
95 PF03604 DNA_RNApol_7kD: DNA d 81.8 0.53 1.1E-05 24.9 0.3 11 269-279 1-11 (32)
96 PF13717 zinc_ribbon_4: zinc-r 81.3 1.2 2.6E-05 24.3 1.6 9 270-278 4-12 (36)
97 smart00834 CxxC_CXXC_SSSS Puta 81.0 0.58 1.3E-05 26.3 0.3 31 7-44 5-35 (41)
98 PF13878 zf-C2H2_3: zinc-finge 80.5 1.2 2.7E-05 25.1 1.5 25 7-31 13-39 (41)
99 TIGR02605 CxxC_CxxC_SSSS putat 80.5 0.63 1.4E-05 27.9 0.3 29 8-43 6-34 (52)
100 TIGR00373 conserved hypothetic 80.4 1.7 3.6E-05 33.3 2.7 35 291-334 104-138 (158)
101 PHA00626 hypothetical protein 80.2 0.54 1.2E-05 28.1 -0.0 12 296-307 23-34 (59)
102 COG1592 Rubrerythrin [Energy p 79.3 1.1 2.4E-05 34.2 1.4 24 296-332 134-157 (166)
103 PF09538 FYDLN_acid: Protein o 79.0 0.92 2E-05 32.0 0.8 29 270-309 11-39 (108)
104 COG2888 Predicted Zn-ribbon RN 78.2 1.7 3.6E-05 26.5 1.6 10 323-332 49-58 (61)
105 COG1997 RPL43A Ribosomal prote 77.7 1 2.2E-05 29.9 0.7 32 295-336 34-65 (89)
106 KOG0717|consensus 77.5 1.6 3.5E-05 38.8 2.0 22 152-173 461-482 (508)
107 COG1996 RPC10 DNA-directed RNA 77.4 0.96 2.1E-05 26.6 0.5 31 4-44 3-33 (49)
108 PRK14890 putative Zn-ribbon RN 76.8 1.8 4E-05 26.4 1.5 10 323-332 47-56 (59)
109 PF09723 Zn-ribbon_8: Zinc rib 76.8 0.82 1.8E-05 26.0 0.1 29 8-43 6-34 (42)
110 PF02176 zf-TRAF: TRAF-type zi 76.6 1.5 3.2E-05 27.1 1.2 40 6-46 8-53 (60)
111 PF14353 CpXC: CpXC protein 75.8 0.42 9E-06 35.2 -1.7 52 8-59 2-62 (128)
112 PRK06266 transcription initiat 75.7 2.2 4.7E-05 33.4 2.1 35 292-335 113-147 (178)
113 cd00730 rubredoxin Rubredoxin; 74.7 1.7 3.7E-05 25.8 1.1 38 7-44 1-43 (50)
114 COG1198 PriA Primosomal protei 74.7 1.8 3.9E-05 41.7 1.7 12 322-333 473-484 (730)
115 smart00531 TFIIE Transcription 74.5 2.6 5.6E-05 31.9 2.2 39 292-334 95-133 (147)
116 PRK09678 DNA-binding transcrip 74.1 1.1 2.4E-05 28.9 0.2 43 8-52 2-46 (72)
117 PF09845 DUF2072: Zn-ribbon co 73.7 1.5 3.3E-05 31.8 0.8 15 268-282 1-15 (131)
118 PF06524 NOA36: NOA36 protein; 73.2 2.9 6.2E-05 34.1 2.3 72 263-340 137-225 (314)
119 PRK04023 DNA polymerase II lar 73.1 4.1 9E-05 40.2 3.7 9 213-221 627-635 (1121)
120 PF02176 zf-TRAF: TRAF-type zi 72.6 1.4 3.1E-05 27.2 0.4 20 282-301 24-43 (60)
121 PF00301 Rubredoxin: Rubredoxi 72.4 2 4.3E-05 25.1 0.9 38 7-44 1-43 (47)
122 PF02892 zf-BED: BED zinc fing 72.4 4.2 9E-05 23.3 2.3 24 265-288 13-40 (45)
123 PF15269 zf-C2H2_7: Zinc-finge 71.2 2.6 5.7E-05 23.8 1.2 22 297-318 21-42 (54)
124 PF08274 PhnA_Zn_Ribbon: PhnA 71.1 1.8 4E-05 22.5 0.5 25 298-333 4-28 (30)
125 COG5151 SSL1 RNA polymerase II 71.0 4.9 0.00011 33.7 3.2 11 211-221 307-317 (421)
126 PF05443 ROS_MUCR: ROS/MUCR tr 70.3 4.2 9.1E-05 29.9 2.4 26 266-294 70-95 (132)
127 TIGR02300 FYDLN_acid conserved 69.9 4.3 9.4E-05 29.3 2.3 33 8-51 10-42 (129)
128 KOG2071|consensus 67.3 5 0.00011 37.1 2.8 26 266-291 416-441 (579)
129 smart00614 ZnF_BED BED zinc fi 67.3 4.1 8.9E-05 24.1 1.6 21 269-289 19-44 (50)
130 TIGR02300 FYDLN_acid conserved 66.5 3.2 6.9E-05 29.9 1.1 30 269-309 10-39 (129)
131 PF01363 FYVE: FYVE zinc finge 66.5 3.5 7.5E-05 26.3 1.2 34 1-46 3-36 (69)
132 PF04959 ARS2: Arsenite-resist 64.0 1.5 3.3E-05 35.2 -1.0 29 34-62 76-104 (214)
133 KOG2071|consensus 63.7 5.5 0.00012 36.8 2.3 32 33-64 416-447 (579)
134 PF07975 C1_4: TFIIH C1-like d 62.4 2.5 5.5E-05 25.1 0.0 26 266-291 19-44 (51)
135 PF13240 zinc_ribbon_2: zinc-r 60.1 6.8 0.00015 18.9 1.3 10 10-19 2-11 (23)
136 PF12760 Zn_Tnp_IS1595: Transp 59.7 8.5 0.00018 22.3 1.9 11 322-332 35-45 (46)
137 PF04780 DUF629: Protein of un 59.7 3.8 8.2E-05 37.1 0.6 43 36-78 58-100 (466)
138 PF04959 ARS2: Arsenite-resist 59.4 9.6 0.00021 30.7 2.8 26 265-290 74-99 (214)
139 KOG2593|consensus 59.4 7.5 0.00016 34.5 2.3 11 240-250 128-138 (436)
140 COG3364 Zn-ribbon containing p 59.4 5.8 0.00013 27.2 1.3 13 268-280 2-14 (112)
141 KOG4124|consensus 58.9 4 8.7E-05 34.8 0.6 53 5-57 347-420 (442)
142 TIGR00595 priA primosomal prot 58.4 5.7 0.00012 37.0 1.6 8 242-249 215-222 (505)
143 PRK00432 30S ribosomal protein 57.9 4.9 0.00011 23.9 0.7 11 324-334 37-47 (50)
144 KOG4167|consensus 57.1 3.3 7.1E-05 39.1 -0.2 26 268-293 792-817 (907)
145 COG3357 Predicted transcriptio 56.5 5.2 0.00011 26.8 0.7 13 240-252 58-70 (97)
146 PF07754 DUF1610: Domain of un 56.1 5.5 0.00012 19.5 0.6 10 6-15 15-24 (24)
147 PRK04023 DNA polymerase II lar 55.5 11 0.00024 37.4 3.0 10 324-333 663-672 (1121)
148 smart00064 FYVE Protein presen 54.7 14 0.0003 23.4 2.5 35 1-47 4-38 (68)
149 PF05443 ROS_MUCR: ROS/MUCR tr 54.6 5.5 0.00012 29.3 0.7 26 296-324 72-97 (132)
150 PF13451 zf-trcl: Probable zin 54.5 9 0.0002 22.6 1.4 15 267-281 3-17 (49)
151 COG5188 PRP9 Splicing factor 3 54.2 17 0.00037 31.3 3.5 71 271-344 241-395 (470)
152 PRK14873 primosome assembly pr 54.0 7.6 0.00017 37.4 1.7 9 324-332 422-430 (665)
153 COG4530 Uncharacterized protei 53.8 5.4 0.00012 27.7 0.5 12 295-306 25-36 (129)
154 KOG2593|consensus 53.7 14 0.0003 32.9 3.0 13 268-280 128-140 (436)
155 COG4888 Uncharacterized Zn rib 53.2 4 8.7E-05 27.9 -0.2 39 5-47 20-58 (104)
156 COG1327 Predicted transcriptio 52.4 6.2 0.00014 29.4 0.6 44 9-52 2-45 (156)
157 COG4957 Predicted transcriptio 51.7 8.4 0.00018 28.0 1.2 25 267-294 75-99 (148)
158 PRK03824 hypA hydrogenase nick 51.6 6.5 0.00014 29.1 0.7 40 5-44 68-116 (135)
159 PF05129 Elf1: Transcription e 49.7 2.2 4.8E-05 28.4 -1.9 40 5-48 20-59 (81)
160 COG1675 TFA1 Transcription ini 49.0 25 0.00055 27.3 3.5 42 256-306 101-142 (176)
161 TIGR01206 lysW lysine biosynth 48.9 8.8 0.00019 23.2 0.8 32 7-46 2-33 (54)
162 PF14446 Prok-RING_1: Prokaryo 48.4 14 0.0003 22.3 1.6 27 8-46 6-32 (54)
163 PF09963 DUF2197: Uncharacteri 48.3 8.2 0.00018 23.4 0.6 37 8-45 3-41 (56)
164 TIGR00244 transcriptional regu 48.3 8 0.00017 28.8 0.7 44 9-52 2-45 (147)
165 PF12773 DZR: Double zinc ribb 47.9 16 0.00035 21.4 1.9 7 298-304 31-37 (50)
166 PF05191 ADK_lid: Adenylate ki 47.8 6.5 0.00014 21.5 0.1 31 8-46 2-32 (36)
167 PTZ00255 60S ribosomal protein 47.5 10 0.00022 25.7 1.0 32 6-47 35-66 (90)
168 KOG4167|consensus 47.2 2.8 6.1E-05 39.5 -2.2 29 32-60 789-817 (907)
169 COG1998 RPS31 Ribosomal protei 47.0 9.9 0.00021 22.3 0.8 9 325-333 38-46 (51)
170 KOG1280|consensus 46.3 17 0.00037 31.2 2.4 39 5-43 77-117 (381)
171 PRK03564 formate dehydrogenase 46.1 9.2 0.0002 32.8 0.8 74 241-335 188-263 (309)
172 TIGR00280 L37a ribosomal prote 45.9 9.2 0.0002 25.9 0.6 32 6-47 34-65 (91)
173 PF08790 zf-LYAR: LYAR-type C2 45.8 8.8 0.00019 19.6 0.4 18 325-343 1-18 (28)
174 PRK05580 primosome assembly pr 45.5 12 0.00025 36.5 1.5 8 242-249 383-390 (679)
175 COG1655 Uncharacterized protei 45.3 5.8 0.00013 31.8 -0.4 41 5-45 17-72 (267)
176 KOG3408|consensus 45.2 11 0.00025 26.8 1.0 24 295-318 56-79 (129)
177 PF01780 Ribosomal_L37ae: Ribo 45.1 3.2 6.9E-05 28.0 -1.6 10 269-278 54-63 (90)
178 PF13453 zf-TFIIB: Transcripti 44.6 10 0.00022 21.3 0.6 36 9-52 1-36 (41)
179 KOG1940|consensus 44.6 15 0.00033 30.8 1.9 49 8-57 197-256 (276)
180 KOG1280|consensus 44.3 29 0.00062 30.0 3.3 41 149-189 77-117 (381)
181 PF08271 TF_Zn_Ribbon: TFIIB z 43.9 8.4 0.00018 21.9 0.2 30 8-46 1-30 (43)
182 KOG3214|consensus 43.8 6.8 0.00015 26.7 -0.2 41 5-49 21-61 (109)
183 COG4896 Uncharacterized protei 43.0 16 0.00035 22.4 1.3 40 241-280 3-43 (68)
184 COG4957 Predicted transcriptio 42.5 16 0.00035 26.6 1.5 25 297-324 77-101 (148)
185 PF14311 DUF4379: Domain of un 42.2 16 0.00034 22.1 1.2 11 8-18 29-39 (55)
186 PF03811 Zn_Tnp_IS1: InsA N-te 42.0 4.2 9.1E-05 22.2 -1.2 7 324-330 29-35 (36)
187 PF13824 zf-Mss51: Zinc-finger 41.9 26 0.00056 21.3 2.0 14 32-45 11-24 (55)
188 PF10013 DUF2256: Uncharacteri 41.3 9.7 0.00021 21.5 0.2 12 326-337 10-21 (42)
189 PF07282 OrfB_Zn_ribbon: Putat 41.0 19 0.00041 22.9 1.5 28 9-46 30-57 (69)
190 PRK12380 hydrogenase nickel in 41.0 14 0.00031 26.4 1.0 26 6-43 69-94 (113)
191 KOG4377|consensus 40.9 19 0.0004 31.8 1.8 64 269-335 272-358 (480)
192 smart00440 ZnF_C2C2 C2C2 Zinc 40.0 7.3 0.00016 21.8 -0.5 11 36-46 29-39 (40)
193 PF08209 Sgf11: Sgf11 (transcr 40.0 18 0.00039 19.3 1.0 24 7-31 4-27 (33)
194 PF11789 zf-Nse: Zinc-finger o 39.9 29 0.00063 21.2 2.1 31 267-301 23-53 (57)
195 COG3091 SprT Zn-dependent meta 39.5 11 0.00024 28.2 0.3 11 268-279 117-127 (156)
196 PF01155 HypA: Hydrogenase exp 39.4 15 0.00032 26.3 0.9 26 268-305 70-95 (113)
197 COG3677 Transposase and inacti 38.7 14 0.00031 27.1 0.7 36 8-48 31-66 (129)
198 PF13821 DUF4187: Domain of un 38.6 22 0.00047 21.6 1.4 21 35-55 27-47 (55)
199 TIGR00100 hypA hydrogenase nic 38.4 16 0.00035 26.2 1.0 26 7-44 70-95 (115)
200 PRK03976 rpl37ae 50S ribosomal 38.4 13 0.00029 25.1 0.5 32 6-47 35-66 (90)
201 PF01096 TFIIS_C: Transcriptio 37.9 2.4 5.2E-05 23.6 -2.6 10 36-45 29-38 (39)
202 TIGR01562 FdhE formate dehydro 37.7 18 0.0004 31.0 1.4 28 264-305 206-233 (305)
203 COG1571 Predicted DNA-binding 37.4 22 0.00047 31.9 1.7 29 270-309 352-380 (421)
204 PF04810 zf-Sec23_Sec24: Sec23 37.3 6.7 0.00015 22.0 -0.9 32 296-333 2-33 (40)
205 KOG4377|consensus 37.2 19 0.00042 31.7 1.4 24 269-292 402-427 (480)
206 TIGR00686 phnA alkylphosphonat 37.2 21 0.00045 25.0 1.3 14 266-279 17-30 (109)
207 PF15135 UPF0515: Uncharacteri 36.6 39 0.00084 27.7 2.9 73 225-310 92-169 (278)
208 cd00065 FYVE FYVE domain; Zinc 36.5 20 0.00043 21.6 1.0 27 270-308 4-30 (57)
209 PF01927 Mut7-C: Mut7-C RNAse 36.4 18 0.00038 27.3 0.9 20 323-342 123-142 (147)
210 PRK14714 DNA polymerase II lar 36.0 35 0.00076 35.1 3.1 10 296-305 692-701 (1337)
211 KOG2907|consensus 35.9 19 0.00041 25.4 0.9 12 325-336 103-114 (116)
212 smart00154 ZnF_AN1 AN1-like Zi 35.9 19 0.0004 20.1 0.7 14 7-20 12-25 (39)
213 KOG3408|consensus 35.8 29 0.00063 24.8 1.8 26 265-290 54-79 (129)
214 smart00504 Ubox Modified RING 35.7 93 0.002 19.0 4.1 28 274-307 19-46 (63)
215 KOG4124|consensus 35.3 16 0.00034 31.4 0.6 22 322-343 396-417 (442)
216 PF12907 zf-met2: Zinc-binding 35.2 23 0.00049 19.9 1.0 8 270-277 3-10 (40)
217 COG1198 PriA Primosomal protei 35.1 18 0.00039 35.1 1.0 37 8-44 445-484 (730)
218 COG2331 Uncharacterized protei 35.0 14 0.0003 23.9 0.2 31 269-306 13-43 (82)
219 PF07649 C1_3: C1-like domain; 34.3 21 0.00045 18.3 0.7 11 35-45 15-25 (30)
220 PRK10220 hypothetical protein; 33.5 32 0.00068 24.2 1.7 13 267-279 19-31 (111)
221 PF05495 zf-CHY: CHY zinc fing 33.3 3.1 6.8E-05 26.9 -3.0 11 240-250 41-51 (71)
222 PF10276 zf-CHCC: Zinc-finger 32.9 21 0.00046 20.0 0.7 12 150-161 28-39 (40)
223 PF05290 Baculo_IE-1: Baculovi 32.8 19 0.00042 26.3 0.6 58 264-339 76-136 (140)
224 KOG3940|consensus 32.3 24 0.00053 29.8 1.2 20 152-172 131-150 (351)
225 PRK00564 hypA hydrogenase nick 32.3 25 0.00055 25.3 1.2 27 6-44 70-97 (117)
226 PRK14559 putative protein seri 32.0 29 0.00063 33.3 1.8 8 243-250 18-25 (645)
227 PRK00420 hypothetical protein; 31.9 37 0.0008 24.2 1.9 28 8-46 24-51 (112)
228 KOG0717|consensus 31.8 29 0.00064 31.3 1.7 23 268-290 292-314 (508)
229 COG1773 Rubredoxin [Energy pro 31.7 18 0.00038 22.0 0.2 12 7-18 3-14 (55)
230 PF08882 Acetone_carb_G: Aceto 31.6 13 0.00029 26.1 -0.3 24 6-30 23-47 (112)
231 PRK14892 putative transcriptio 31.4 24 0.00053 24.5 0.9 36 5-47 19-54 (99)
232 KOG2272|consensus 31.1 16 0.00035 29.7 0.0 19 178-198 98-116 (332)
233 PF14369 zf-RING_3: zinc-finge 30.0 31 0.00066 18.7 1.0 31 7-46 2-32 (35)
234 PF01286 XPA_N: XPA protein N- 29.4 14 0.00031 19.8 -0.4 10 299-308 6-15 (34)
235 COG1571 Predicted DNA-binding 28.9 39 0.00086 30.3 2.0 29 9-48 352-380 (421)
236 PRK03681 hypA hydrogenase nick 28.9 40 0.00087 24.1 1.7 12 268-279 70-81 (114)
237 KOG1994|consensus 28.8 18 0.00038 29.1 -0.2 24 33-56 237-260 (268)
238 TIGR00595 priA primosomal prot 28.6 46 0.001 31.1 2.5 9 214-222 215-223 (505)
239 PF10263 SprT-like: SprT-like 28.5 14 0.00031 28.0 -0.7 11 268-278 123-133 (157)
240 PF09332 Mcm10: Mcm10 replicat 28.4 7.1 0.00015 33.9 -2.5 46 6-51 251-301 (344)
241 KOG2807|consensus 28.1 92 0.002 26.8 3.8 33 150-198 275-307 (378)
242 KOG3507|consensus 28.1 12 0.00026 22.7 -0.9 13 296-308 37-49 (62)
243 KOG1842|consensus 27.0 37 0.00081 30.4 1.5 22 269-290 16-37 (505)
244 PF04780 DUF629: Protein of un 26.9 52 0.0011 30.1 2.4 26 268-293 57-83 (466)
245 PTZ00448 hypothetical protein; 26.7 37 0.00081 29.7 1.4 22 36-57 315-336 (373)
246 PF01428 zf-AN1: AN1-like Zinc 26.7 20 0.00043 20.4 -0.1 15 323-337 12-26 (43)
247 PF13248 zf-ribbon_3: zinc-rib 26.5 30 0.00064 17.1 0.5 6 271-276 5-10 (26)
248 PF07800 DUF1644: Protein of u 26.2 79 0.0017 24.0 2.8 56 150-207 79-134 (162)
249 PRK14873 primosome assembly pr 25.9 47 0.001 32.2 2.1 26 264-305 406-431 (665)
250 KOG2636|consensus 25.6 41 0.00089 30.2 1.5 22 7-28 401-423 (497)
251 PF07535 zf-DBF: DBF zinc fing 25.6 54 0.0012 19.4 1.5 20 6-28 4-23 (49)
252 TIGR00310 ZPR1_znf ZPR1 zinc f 25.5 21 0.00046 28.3 -0.2 42 9-51 2-46 (192)
253 PF11672 DUF3268: Protein of u 25.4 34 0.00075 23.9 0.8 7 325-331 32-38 (102)
254 PF07191 zinc-ribbons_6: zinc- 25.0 13 0.00029 23.7 -1.1 13 267-279 16-28 (70)
255 COG1645 Uncharacterized Zn-fin 24.8 40 0.00087 24.7 1.1 27 8-46 29-55 (131)
256 PRK05978 hypothetical protein; 24.8 28 0.0006 26.3 0.3 8 299-306 55-62 (148)
257 COG1656 Uncharacterized conser 24.0 56 0.0012 25.0 1.8 14 325-338 131-144 (165)
258 KOG3002|consensus 24.0 49 0.0011 28.4 1.6 74 239-317 79-160 (299)
259 COG1326 Uncharacterized archae 23.9 68 0.0015 25.3 2.2 34 269-306 7-40 (201)
260 PRK14714 DNA polymerase II lar 23.5 63 0.0014 33.5 2.4 22 269-306 668-689 (1337)
261 PF02318 FYVE_2: FYVE-type zin 23.3 53 0.0012 23.6 1.5 9 324-332 94-102 (118)
262 PF11931 DUF3449: Domain of un 23.1 28 0.0006 27.6 0.0 19 325-343 102-121 (196)
263 PF03833 PolC_DP2: DNA polymer 23.1 28 0.0006 34.1 0.0 8 326-333 694-701 (900)
264 KOG2636|consensus 22.9 40 0.00087 30.2 0.9 29 289-317 394-423 (497)
265 PF04423 Rad50_zn_hook: Rad50 22.6 32 0.00069 20.6 0.2 12 298-309 22-33 (54)
266 smart00586 ZnF_DBF Zinc finger 22.6 40 0.00086 19.9 0.6 20 6-28 4-23 (49)
267 KOG0978|consensus 22.5 37 0.00081 32.6 0.7 44 297-340 644-694 (698)
268 cd00924 Cyt_c_Oxidase_Vb Cytoc 22.3 45 0.00097 23.1 0.9 15 265-279 76-90 (97)
269 PLN02294 cytochrome c oxidase 22.1 44 0.00095 25.7 0.9 16 264-279 137-152 (174)
270 PF06220 zf-U1: U1 zinc finger 21.9 84 0.0018 17.3 1.8 22 296-317 3-26 (38)
271 PF04606 Ogr_Delta: Ogr/Delta- 21.8 14 0.0003 21.5 -1.4 38 153-192 1-38 (47)
272 COG4306 Uncharacterized protei 21.8 48 0.001 23.8 1.0 41 8-48 40-81 (160)
273 KOG4118|consensus 21.4 48 0.001 20.7 0.8 21 8-28 39-59 (74)
274 COG5151 SSL1 RNA polymerase II 21.2 53 0.0011 27.9 1.3 22 240-261 388-409 (421)
275 KOG0782|consensus 21.2 28 0.00061 32.2 -0.3 50 283-338 240-290 (1004)
276 PF14787 zf-CCHC_5: GAG-polypr 21.0 42 0.0009 18.3 0.4 11 327-337 5-15 (36)
277 PF14255 Cys_rich_CPXG: Cystei 20.7 46 0.00099 20.0 0.6 11 298-308 2-12 (52)
278 KOG3014|consensus 20.3 50 0.0011 27.2 0.9 26 7-32 37-64 (257)
279 PF02591 DUF164: Putative zinc 20.2 88 0.0019 18.9 1.8 10 266-275 44-53 (56)
280 PF14205 Cys_rich_KTR: Cystein 20.1 40 0.00087 20.3 0.3 8 296-303 28-35 (55)
No 1
>KOG1074|consensus
Probab=99.97 E-value=3.3e-32 Score=241.67 Aligned_cols=113 Identities=27% Similarity=0.620 Sum_probs=96.9
Q ss_pred CCcccccccccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCCCCC-CccccC---CCcccccC
Q psy8793 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTV-NRFPCD---KCEKVYSC 224 (345)
Q Consensus 149 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~-~~~~C~---~C~~~f~~ 224 (345)
..|..|-+|-++..-+..|+.|++.|.+++||+|. .|++.|+++.+|+.|+-.|-..+.. ..+.|+ +|.+.|.+
T Consensus 603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCK--iCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn 680 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCK--ICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTN 680 (958)
T ss_pred CCccceeeeeecccchhhhhhhhhcccCcCccccc--cccchhccccchhhcccccccCccccccccCCchhhhcccccc
Confidence 34689999999999999999999999999999998 6999999999999999998776544 458899 99999999
Q ss_pred hhhHHHHHHHhcCCC-------------CccCccccccCCChhHHHHHhhhh
Q psy8793 225 ASSLTKHMKARLGRQ-------------PVSCDICHKEFTHPSSVLYHKQSI 263 (345)
Q Consensus 225 ~~~l~~H~~~~~~~~-------------~~~C~~C~~~f~~~~~l~~H~~~~ 263 (345)
.-.+..|+++|.+.. .-.|+.|.+.|.....+..++..+
T Consensus 681 ~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~ 732 (958)
T KOG1074|consen 681 AVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQ 732 (958)
T ss_pred cccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhcc
Confidence 999999999987321 135888999887777777776655
No 2
>KOG2462|consensus
Probab=99.96 E-value=1.1e-30 Score=205.16 Aligned_cols=132 Identities=29% Similarity=0.599 Sum_probs=116.3
Q ss_pred CccccCCCcccccChhhHHHHHHHhcC---CCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHH
Q psy8793 211 NRFPCDKCEKVYSCASSLTKHMKARLG---RQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRH 287 (345)
Q Consensus 211 ~~~~C~~C~~~f~~~~~l~~H~~~~~~---~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H 287 (345)
..|+|+.|++.+++...|-.|...|.. .+.+.|..|+++|.+...|.+|+++|. -++.|++|||.|...=.|+-|
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGH 206 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGH 206 (279)
T ss_pred CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcc
Confidence 458899999999988888888888864 456889999999999999999998887 568899999999888889999
Q ss_pred HHHhCCCCCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhccccchhhhcc
Q psy8793 288 QLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHY 344 (345)
Q Consensus 288 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 344 (345)
+|+|+|+|||.|+.|++.|++.++|+.||++|.+.++|.|..|+|+|...+-|.+|.
T Consensus 207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ 263 (279)
T KOG2462|consen 207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS 263 (279)
T ss_pred cccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999998885
No 3
>KOG1074|consensus
Probab=99.95 E-value=1.6e-29 Score=224.65 Aligned_cols=79 Identities=30% Similarity=0.623 Sum_probs=73.0
Q ss_pred cccCCCcccccChhhHHHHHHHhcCCCCccCccccccCCChhHHHHHhhhhcCC----ceeecC---cCccccCChHHHH
Q psy8793 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNN----EIFKCT---KCDKVFQHIQLLN 285 (345)
Q Consensus 213 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~----~~~~C~---~C~~~f~~~~~l~ 285 (345)
..|=+|.++++-...|+.|.++|.|++||+|.+|++.|.++.+|+.|+.+|... -+|.|+ +|-+.|...-.|.
T Consensus 606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lp 685 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLP 685 (958)
T ss_pred cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccccc
Confidence 789999999999999999999999999999999999999999999999988764 457899 8999999999999
Q ss_pred HHHHHh
Q psy8793 286 RHQLVH 291 (345)
Q Consensus 286 ~H~~~h 291 (345)
.|+++|
T Consensus 686 QhIriH 691 (958)
T KOG1074|consen 686 QHIRIH 691 (958)
T ss_pred ceEEee
Confidence 999988
No 4
>KOG2462|consensus
Probab=99.94 E-value=6.3e-28 Score=189.68 Aligned_cols=130 Identities=27% Similarity=0.572 Sum_probs=113.1
Q ss_pred ccCccccchHhHHHHhhhhcCCCCCCccccCCCcccccChhhHHHHHHHhcCCCCccCccccccCCChhHHHHHhhhhcC
Q psy8793 186 NCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHN 265 (345)
Q Consensus 186 ~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ 265 (345)
.|++.+.+...|.+|.+.|-.....+-+.|..|++++.+-..|..|+++|. -+++|.+||+.|..++.|+-|++.|+|
T Consensus 135 eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTG 212 (279)
T KOG2462|consen 135 ECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTG 212 (279)
T ss_pred ccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccC
Confidence 455555555555555555544444466999999999999999999999994 579999999999999999999999999
Q ss_pred CceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHHHHHhh
Q psy8793 266 NEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLM 317 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 317 (345)
++||.|+.|++.|.+.++|+.||++|.+.|+|+|+.|+++|+..+-|.+|.-
T Consensus 213 EKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 213 EKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred CCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999964
No 5
>KOG3608|consensus
Probab=99.94 E-value=9.3e-27 Score=187.80 Aligned_cols=188 Identities=27% Similarity=0.541 Sum_probs=163.9
Q ss_pred ccccc--cccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCCCCCCccccCCCcccccChhhHH
Q psy8793 152 HTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLT 229 (345)
Q Consensus 152 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~ 229 (345)
+.|.+ |...+.+++.|++|++.|.+++-..|+ .|+..|.+...|-.|++....-. ..+|.|..|-+.|.+...|.
T Consensus 178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp--~Cg~~F~~~tkl~DH~rRqt~l~-~n~fqC~~C~KrFaTeklL~ 254 (467)
T KOG3608|consen 178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACP--HCGELFRTKTKLFDHLRRQTELN-TNSFQCAQCFKRFATEKLLK 254 (467)
T ss_pred eeccchhhhhhhccHHHHHHHHHhcCCCeEEecc--hHHHHhccccHHHHHHHhhhhhc-CCchHHHHHHHHHhHHHHHH
Confidence 56776 999999999999999999999999997 79999999999999977653322 25799999999999999999
Q ss_pred HHHHHhcCCCCccCccccccCCChhHHHHHhh-hhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCC--Ccccc
Q psy8793 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQ-SIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAY 306 (345)
Q Consensus 230 ~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f 306 (345)
.|+..|.. .|+|+.|+.+...++.|..|++ +|..++||+|..|++.|...++|++|..+|. +..|+|.. |.++|
T Consensus 255 ~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~ 331 (467)
T KOG3608|consen 255 SHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSV 331 (467)
T ss_pred HHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHH
Confidence 99999954 5999999999999999999987 5667899999999999999999999999888 66799966 99999
Q ss_pred CChHHHHHHhhhhc-CCC--ccccccchhhccccchhhhccC
Q psy8793 307 KTNISLSAHLMKHT-GAK--PYVCEICNKVLTHRSSLISHYR 345 (345)
Q Consensus 307 ~~~~~l~~H~~~h~-~~~--~~~C~~C~~~f~~~~~l~~H~r 345 (345)
.+...|++|++.++ |.. +|.|-.|++.|++..+|-.|++
T Consensus 332 r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~ 373 (467)
T KOG3608|consen 332 RTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM 373 (467)
T ss_pred HHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHH
Confidence 99999999988544 554 4999999999999999998874
No 6
>KOG3623|consensus
Probab=99.91 E-value=2.7e-25 Score=194.92 Aligned_cols=108 Identities=26% Similarity=0.597 Sum_probs=96.1
Q ss_pred ccccccccccCCHHHHHHHHhhhcC--CCCccccccccCccccchHhHHHHhhhhcCCC----------CCCccccCCCc
Q psy8793 152 HTCELCSKGFLSAESYKCHLRRHKG--EKPVTCTFENCTETFVESWAMRKHVRTCHNKP----------TVNRFPCDKCE 219 (345)
Q Consensus 152 ~~C~~C~~~f~~~~~l~~H~~~~~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~----------~~~~~~C~~C~ 219 (345)
..|++|++.+.....|++|++.-+. +..|.|. .|.++|.++..|.+|+..|...+ ..+.|+|..|+
T Consensus 211 ltcpycdrgykrltslkeHikyrhekne~nfsC~--lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECg 288 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCM--LCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECG 288 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcch--hhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccc
Confidence 6899999999999999999986443 4568887 69999999999999999986432 24679999999
Q ss_pred ccccChhhHHHHHHHhcCCCCccCccccccCCChhHHHHHhh
Q psy8793 220 KVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQ 261 (345)
Q Consensus 220 ~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~ 261 (345)
+.|+-+..|+.|+|+|.|++||.|+-|.+.|.....+..|+.
T Consensus 289 KAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 289 KAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred hhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence 999999999999999999999999999999999999888865
No 7
>KOG3608|consensus
Probab=99.91 E-value=6e-25 Score=177.42 Aligned_cols=189 Identities=23% Similarity=0.541 Sum_probs=171.7
Q ss_pred cccccc--cccccCCHHHHHHHHhhhcC------------C-CCccccccccCccccchHhHHHHhhhhcCCCCCCcccc
Q psy8793 151 PHTCEL--CSKGFLSAESYKCHLRRHKG------------E-KPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPC 215 (345)
Q Consensus 151 ~~~C~~--C~~~f~~~~~l~~H~~~~~~------------~-~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C 215 (345)
.+.|.+ |+..|.+..+|..|+..|.- + .-+.|.|-.|...+.++..|+.|++.|.++ +...|
T Consensus 134 ~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~e---KvvAC 210 (467)
T KOG3608|consen 134 NFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNE---KVVAC 210 (467)
T ss_pred hhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCC---eEEec
Confidence 377765 99999999999999876632 1 236899999999999999999999999998 67899
Q ss_pred CCCcccccChhhHHHHHHHhc--CCCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHH-hC
Q psy8793 216 DKCEKVYSCASSLTKHMKARL--GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLV-HM 292 (345)
Q Consensus 216 ~~C~~~f~~~~~l~~H~~~~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~ 292 (345)
+.||..|++...|.+|++... ..++|.|..|.+.|.+...|.+|+..|-.- |+|+.|+.+....++|..||+. |.
T Consensus 211 p~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~--ykCplCdmtc~~~ssL~~H~r~rHs 288 (467)
T KOG3608|consen 211 PHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC--YKCPLCDMTCSSASSLTTHIRYRHS 288 (467)
T ss_pred chHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc--ccccccccCCCChHHHHHHHHhhhc
Confidence 999999999999999988654 467899999999999999999999988765 9999999999999999999996 99
Q ss_pred CCCCcCCCCCccccCChHHHHHHhhhhcCCCcccccc--chhhccccchhhhccC
Q psy8793 293 DTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEI--CNKVLTHRSSLISHYR 345 (345)
Q Consensus 293 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~r 345 (345)
..+||+|..|++.|.+.+.|.+|+..|. +..|.|.. |.++|.+...|++|++
T Consensus 289 ~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~ 342 (467)
T KOG3608|consen 289 KDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFL 342 (467)
T ss_pred cCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 67899977 9999999999999985
No 8
>KOG3623|consensus
Probab=99.87 E-value=4.8e-23 Score=180.89 Aligned_cols=76 Identities=39% Similarity=0.800 Sum_probs=74.4
Q ss_pred eecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhccccchhhhcc
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHY 344 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 344 (345)
|-|+.|+|.|...+.|.+|.=.|+|.+||+|.+|.+.|..+-.|..|++.|.|+|||.|..|+|.|+.....-.||
T Consensus 895 yaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM 970 (1007)
T KOG3623|consen 895 YACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM 970 (1007)
T ss_pred chHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888887
No 9
>KOG3576|consensus
Probab=99.71 E-value=1.2e-18 Score=130.51 Aligned_cols=110 Identities=23% Similarity=0.445 Sum_probs=61.6
Q ss_pred ccccCCCcccccChhhHHHHHHHhcCCCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHHh
Q psy8793 212 RFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 212 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
.|.|.+|++.|....-|.+|++-|...+.+-|..|++.|...-.|.+|++.|++-+||+|..|+++|...-.|.+|++.-
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kv 196 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKV 196 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHH
Confidence 35566666666655555666665555555555555555555555555555555555555555555555555555555432
Q ss_pred CC-----------CCCcCCCCCccccCChHHHHHHhhhhcC
Q psy8793 292 MD-----------TRPYQCPQCPMAYKTNISLSAHLMKHTG 321 (345)
Q Consensus 292 ~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 321 (345)
+| .+-|.|++||.+-.....+..|++.|+.
T Consensus 197 hgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 197 HGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred cCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 22 2335555555555555555555555544
No 10
>KOG3576|consensus
Probab=99.59 E-value=3.4e-16 Score=117.43 Aligned_cols=107 Identities=32% Similarity=0.566 Sum_probs=75.2
Q ss_pred CCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHHHHHhh
Q psy8793 238 RQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLM 317 (345)
Q Consensus 238 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 317 (345)
...|.|.+|++.|....-|.+|++-|.+-+.|-|..||+.|.+.-+|++|+++|+|.+||+|..|++.|+..-.|..|.+
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK 194 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence 44567777777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred hhcC-----------CCccccccchhhccccchhhhcc
Q psy8793 318 KHTG-----------AKPYVCEICNKVLTHRSSLISHY 344 (345)
Q Consensus 318 ~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~ 344 (345)
.-+| ++.|.|+.||++-.....+..|+
T Consensus 195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~ 232 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHL 232 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHH
Confidence 4333 34577777777766666555554
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.34 E-value=1.7e-12 Score=115.88 Aligned_cols=141 Identities=22% Similarity=0.474 Sum_probs=102.0
Q ss_pred ccccccccCccccchHhHHHHhhhhcCCCCCCccccCC--CcccccChhhHHHHHHHhcCCCCccCccccccCCChhHHH
Q psy8793 180 VTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDK--CEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVL 257 (345)
Q Consensus 180 ~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~ 257 (345)
..|. +|.+..... .|..|.....- ....|+. |+..|. ...+..| +.|+.|++.|. ...|.
T Consensus 408 V~C~--NC~~~i~l~-~l~lHe~~C~r----~~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~Le 469 (567)
T PLN03086 408 VECR--NCKHYIPSR-SIALHEAYCSR----HNVVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEME 469 (567)
T ss_pred EECC--CCCCccchh-HHHHHHhhCCC----cceeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHH
Confidence 4555 566655543 34455544322 2246774 888884 3233333 58999999885 67889
Q ss_pred HHhhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccC----------ChHHHHHHhhhhcCCCcccc
Q psy8793 258 YHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYK----------TNISLSAHLMKHTGAKPYVC 327 (345)
Q Consensus 258 ~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~~C 327 (345)
.|+..+| .++.|+ |++.+ ....|..|+.+|...+++.|+.|++.|. ..+.|..|+..+ |.+++.|
T Consensus 470 kH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C 544 (567)
T PLN03086 470 KHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPC 544 (567)
T ss_pred HHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEc
Confidence 9999886 789999 99755 6688999999999999999999999885 245899998886 8899999
Q ss_pred ccchhhccccchhhhcc
Q psy8793 328 EICNKVLTHRSSLISHY 344 (345)
Q Consensus 328 ~~C~~~f~~~~~l~~H~ 344 (345)
..|++.+..+ +|..|+
T Consensus 545 ~~Cgk~Vrlr-dm~~H~ 560 (567)
T PLN03086 545 DSCGRSVMLK-EMDIHQ 560 (567)
T ss_pred cccCCeeeeh-hHHHHH
Confidence 9999886554 566664
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.28 E-value=1.5e-11 Score=109.94 Aligned_cols=145 Identities=20% Similarity=0.450 Sum_probs=114.2
Q ss_pred ccccccccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCCCCCCccccCCCcccccChhhHHHH
Q psy8793 152 HTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKH 231 (345)
Q Consensus 152 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H 231 (345)
..|+.|....... .|..|..... -....|+-..|+..|. +..+..| +.|+.|++.|. ...|..|
T Consensus 408 V~C~NC~~~i~l~-~l~lHe~~C~-r~~V~Cp~~~Cg~v~~-r~el~~H------------~~C~~Cgk~f~-~s~LekH 471 (567)
T PLN03086 408 VECRNCKHYIPSR-SIALHEAYCS-RHNVVCPHDGCGIVLR-VEEAKNH------------VHCEKCGQAFQ-QGEMEKH 471 (567)
T ss_pred EECCCCCCccchh-HHHHHHhhCC-CcceeCCcccccceee-ccccccC------------ccCCCCCCccc-hHHHHHH
Confidence 4799999886544 5678885433 3446676335999884 3333333 68999999996 6789999
Q ss_pred HHHhcCCCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccC----------ChHHHHHHHHHhCCCCCcCCCC
Q psy8793 232 MKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQ----------HIQLLNRHQLVHMDTRPYQCPQ 301 (345)
Q Consensus 232 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~~C~~ 301 (345)
+.+++ .++.|+ |+..+ .+..|..|+..+.+.+++.|++|++.|. ..+.|..|.... +.+++.|..
T Consensus 472 ~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~ 546 (567)
T PLN03086 472 MKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS 546 (567)
T ss_pred HHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc
Confidence 99985 789999 99755 6789999999999999999999999995 245899998885 889999999
Q ss_pred CccccCChHHHHHHhhh
Q psy8793 302 CPMAYKTNISLSAHLMK 318 (345)
Q Consensus 302 C~~~f~~~~~l~~H~~~ 318 (345)
||+.+. ...|..|+..
T Consensus 547 Cgk~Vr-lrdm~~H~~~ 562 (567)
T PLN03086 547 CGRSVM-LKEMDIHQIA 562 (567)
T ss_pred cCCeee-ehhHHHHHHH
Confidence 998885 4778888664
No 13
>PHA00733 hypothetical protein
Probab=99.22 E-value=1.3e-11 Score=89.84 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=59.4
Q ss_pred CCCccCccccccCCChhHHHHH--h---hhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHH
Q psy8793 238 RQPVSCDICHKEFTHPSSVLYH--K---QSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISL 312 (345)
Q Consensus 238 ~~~~~C~~C~~~f~~~~~l~~H--~---~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 312 (345)
.+++.|.+|...|.++..|..+ + ..+++.+||.|+.|++.|.+.+.|..|++.| ..+|.|+.|++.|.....|
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL 115 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST 115 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence 3456666666666555555444 1 2334577888888888888888888888876 3568888888888888888
Q ss_pred HHHhhhhcCC
Q psy8793 313 SAHLMKHTGA 322 (345)
Q Consensus 313 ~~H~~~h~~~ 322 (345)
..|+...++.
T Consensus 116 ~~H~~~~h~~ 125 (128)
T PHA00733 116 LDHVCKKHNI 125 (128)
T ss_pred HHHHHHhcCc
Confidence 8888876653
No 14
>PHA00733 hypothetical protein
Probab=99.21 E-value=5.6e-12 Score=91.79 Aligned_cols=91 Identities=20% Similarity=0.382 Sum_probs=73.8
Q ss_pred hhHHHHHhhhhcCCceeecCcCccccCChHHHHHH--HH---HhCCCCCcCCCCCccccCChHHHHHHhhhhcCCCcccc
Q psy8793 253 PSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRH--QL---VHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327 (345)
Q Consensus 253 ~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C 327 (345)
...|..+-..-...+++.|.+|...|.....|..| +. .+++.+||.|+.|++.|...+.|..|++.| ..+|.|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C 102 (128)
T PHA00733 25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVC 102 (128)
T ss_pred HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccC
Confidence 44455544444456789999999999888777766 22 245588999999999999999999999977 357999
Q ss_pred ccchhhccccchhhhccC
Q psy8793 328 EICNKVLTHRSSLISHYR 345 (345)
Q Consensus 328 ~~C~~~f~~~~~l~~H~r 345 (345)
..|+++|.....|.+|++
T Consensus 103 ~~CgK~F~~~~sL~~H~~ 120 (128)
T PHA00733 103 PVCGKEFRNTDSTLDHVC 120 (128)
T ss_pred CCCCCccCCHHHHHHHHH
Confidence 999999999999999974
No 15
>PHA02768 hypothetical protein; Provisional
Probab=99.17 E-value=1.3e-11 Score=73.32 Aligned_cols=44 Identities=27% Similarity=0.539 Sum_probs=37.2
Q ss_pred CcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhccccchhh
Q psy8793 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLI 341 (345)
Q Consensus 296 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 341 (345)
.|.|+.||+.|+..++|..|+++|+ ++|+|..|+++|.+.+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 5788888888888888888888888 6888888888888887775
No 16
>PHA02768 hypothetical protein; Provisional
Probab=99.00 E-value=1.9e-10 Score=68.41 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=38.8
Q ss_pred eeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHH
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISL 312 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 312 (345)
-|+|+.||+.|...+.|..|+++|+ ++|+|..|++.|...+.|
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 3899999999999999999999998 689999999999987766
No 17
>KOG3993|consensus
Probab=98.87 E-value=3.1e-10 Score=95.17 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=52.9
Q ss_pred eeecCcCccccCChHHHHHHHHHhCCC----------------------------------------------CCcCCCC
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLVHMDT----------------------------------------------RPYQCPQ 301 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~h~~~----------------------------------------------~~~~C~~ 301 (345)
.|.|..|++.|...+-|+.|+.+|... ....|++
T Consensus 356 i~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~ 435 (500)
T KOG3993|consen 356 IFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPY 435 (500)
T ss_pred eeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCC
Confidence 588999999999999999997776320 1145677
Q ss_pred CccccCChHHHHHHhhhhcCCCccccccchhhccccchhhhcc
Q psy8793 302 CPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHY 344 (345)
Q Consensus 302 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 344 (345)
|+..++.+..--.+.+.=..+..|.|.+|.-+|.....|.+|+
T Consensus 436 ~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhi 478 (500)
T KOG3993|consen 436 DGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHI 478 (500)
T ss_pred CCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHh
Confidence 7766665554333333333345588888888888888888775
No 18
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.87 E-value=1.1e-09 Score=55.73 Aligned_cols=25 Identities=44% Similarity=0.949 Sum_probs=15.9
Q ss_pred HHHHHhhhhcCCCccccccchhhcc
Q psy8793 311 SLSAHLMKHTGAKPYVCEICNKVLT 335 (345)
Q Consensus 311 ~l~~H~~~h~~~~~~~C~~C~~~f~ 335 (345)
+|.+|+++|+|++||.|+.|+++|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 3566666666666666666666664
No 19
>KOG3993|consensus
Probab=98.86 E-value=3.4e-10 Score=94.97 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=48.4
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchhhhcccccccccccccc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARNVLKL 65 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~ 65 (345)
-|-|.+|...|.+...|.+|.-.--...-|+|+.|+|.|+--.+|..|.+=|.+.....
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa 325 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAA 325 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhh
Confidence 48999999999999999999543222234999999999999999999999887664443
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.76 E-value=4.1e-09 Score=53.58 Aligned_cols=25 Identities=36% Similarity=0.879 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCCcCCCCCccccC
Q psy8793 283 LLNRHQLVHMDTRPYQCPQCPMAYK 307 (345)
Q Consensus 283 ~l~~H~~~h~~~~~~~C~~C~~~f~ 307 (345)
+|.+|+++|++++||.|++|+++|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 4777888888888888888888875
No 21
>PHA00616 hypothetical protein
Probab=98.71 E-value=5.5e-09 Score=59.00 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred CcCCCCCccccCChHHHHHHhhhhcCCCccccc
Q psy8793 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328 (345)
Q Consensus 296 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 328 (345)
||+|+.||+.|..++.|..|++.|+|++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 456666666666666666666666666666653
No 22
>PHA00616 hypothetical protein
Probab=98.58 E-value=2.2e-08 Score=56.61 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=32.3
Q ss_pred eeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccc
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMA 305 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 305 (345)
||+|+.||+.|...++|.+|++.|++++++.|++=-..
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~ 38 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIY 38 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEE
Confidence 58999999999999999999999999999888754433
No 23
>PHA00732 hypothetical protein
Probab=98.50 E-value=8.9e-08 Score=63.04 Aligned_cols=48 Identities=27% Similarity=0.588 Sum_probs=35.9
Q ss_pred eeecCcCccccCChHHHHHHHHH-hCCCCCcCCCCCccccCChHHHHHHhhhhcC
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLV-HMDTRPYQCPQCPMAYKTNISLSAHLMKHTG 321 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 321 (345)
||.|+.|++.|.+.+.|..|++. |.+ +.|+.|++.|. .|..|+..+.+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---ChhhhhcccCC
Confidence 47788888888888888888874 543 57888888886 47778766554
No 24
>PHA00732 hypothetical protein
Probab=98.50 E-value=8.9e-08 Score=63.04 Aligned_cols=43 Identities=33% Similarity=0.678 Sum_probs=37.2
Q ss_pred CcCCCCCccccCChHHHHHHhhh-hcCCCccccccchhhccccchhhhcc
Q psy8793 296 PYQCPQCPMAYKTNISLSAHLMK-HTGAKPYVCEICNKVLTHRSSLISHY 344 (345)
Q Consensus 296 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~ 344 (345)
||.|..|++.|...+.|+.|++. |. ++.|+.|+++|. .|..|+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~ 44 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHF 44 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhh
Confidence 68999999999999999999985 65 368999999998 477775
No 25
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.24 E-value=2e-06 Score=52.61 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=33.5
Q ss_pred eeecCcCccccCChHHHHHHHHH-hCCC-CCcCCCCCccccCChHHHHHHhhhhc
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLV-HMDT-RPYQCPQCPMAYKTNISLSAHLMKHT 320 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~ 320 (345)
.|.||+|++ ..+...|..|+.. |..+ +.+.||+|...+. .+|..|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 377888888 4456778888665 4443 4577888887654 47777877554
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.23 E-value=5.2e-07 Score=55.17 Aligned_cols=51 Identities=33% Similarity=0.587 Sum_probs=40.7
Q ss_pred CccCCCCCCCCCCCchhHHHHh-hhcCC-CCccCCcCCccccchhhhccccccccc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFR-IHTGE-KPFTCNICSRKFTTYSQVRRSSNTSAR 60 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~ 60 (345)
.|+|++|++ ..+...|..|+. .|..+ +.+.||+|...+. .+|..||...|+
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 589999999 566789999965 56654 4699999998755 499999987663
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=98.11 E-value=2.8e-06 Score=41.89 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=15.2
Q ss_pred eecCcCccccCChHHHHHHHHHh
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
|.|+.|++.|.+.+.|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 56666666666666666666653
No 28
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.99 E-value=3.3e-06 Score=68.78 Aligned_cols=55 Identities=25% Similarity=0.684 Sum_probs=47.2
Q ss_pred CCCCccCCC--CCCCCCCCchhHHHHh-hhc------------------CCCCccCCcCCccccchhhhccccccc
Q psy8793 4 GIKQYQCSQ--CPKAFNQKGNLKEHFR-IHT------------------GEKPFTCNICSRKFTTYSQVRRSSNTS 58 (345)
Q Consensus 4 ~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~~ 58 (345)
++|||+|++ |++.|+++..|+.|+. -|. +++||.|++|+|+|.+...|+.|....
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~Hs 421 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHS 421 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccccc
Confidence 569999987 9999999999999965 451 348899999999999999999998653
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.93 E-value=4e-06 Score=41.31 Aligned_cols=23 Identities=30% Similarity=0.898 Sum_probs=16.9
Q ss_pred cCCCCCccccCChHHHHHHhhhh
Q psy8793 297 YQCPQCPMAYKTNISLSAHLMKH 319 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~~H~~~h 319 (345)
|.|+.|++.|.+...|.+|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 56777777777777777777654
No 30
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.81 E-value=2.3e-05 Score=38.90 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=14.1
Q ss_pred eecCcCccccCChHHHHHHHHHh
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
|.|++|++.|.+...|..|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 56667777777777777776654
No 31
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.81 E-value=4.1e-06 Score=59.08 Aligned_cols=73 Identities=19% Similarity=0.417 Sum_probs=20.4
Q ss_pred cCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHHHHHhhhh
Q psy8793 242 SCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319 (345)
Q Consensus 242 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 319 (345)
.|..|+..|.+...|..|+...|+-..- ....+.....+..+++.-. ...+.|..|++.|.+...|..|++.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccc----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 3777888888888888888766653211 1112223344444443321 12588999999999999999998854
No 32
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.69 E-value=2.7e-05 Score=39.96 Aligned_cols=25 Identities=32% Similarity=0.747 Sum_probs=15.4
Q ss_pred eeecCcCccccCChHHHHHHHHHhC
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLVHM 292 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~h~ 292 (345)
+|+|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 3566666666666666666665553
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.65 E-value=3.8e-05 Score=54.02 Aligned_cols=73 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred ccCCCcccccChhhHHHHHHHhcCCCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHHh
Q psy8793 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 214 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
.|..|+..|.+...|..|+...++-..- ....+.....+..++... -...+.|..|++.|.+...|..||+.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccc----cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 4788888888888888888776653211 111122333344443322 223689999999999999999999864
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.59 E-value=3.5e-05 Score=38.21 Aligned_cols=24 Identities=29% Similarity=0.827 Sum_probs=17.9
Q ss_pred cCCCCCccccCChHHHHHHhhhhc
Q psy8793 297 YQCPQCPMAYKTNISLSAHLMKHT 320 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~~H~~~h~ 320 (345)
|.|++|++.|.+...|..|+..|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 578888888888888888887664
No 35
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.55 E-value=3.6e-05 Score=62.92 Aligned_cols=70 Identities=26% Similarity=0.496 Sum_probs=41.9
Q ss_pred CCceeecCc--CccccCChHHHHHHHHH-hCCCCCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhccccchhh
Q psy8793 265 NNEIFKCTK--CDKVFQHIQLLNRHQLV-HMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLI 341 (345)
Q Consensus 265 ~~~~~~C~~--C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 341 (345)
+++||+|++ |+|.|++..-|+-|+.- |-..+...=+.=. .|.-.-...|||+|++|+|.|.....|+
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~----------~~~~F~~~~KPYrCevC~KRYKNlNGLK 415 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPE----------KMNIFSAKDKPYRCEVCDKRYKNLNGLK 415 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCcc----------ccccccccCCceeccccchhhccCccce
Confidence 468999988 99999999999999764 4332221111000 1111122346677777777776666666
Q ss_pred hcc
Q psy8793 342 SHY 344 (345)
Q Consensus 342 ~H~ 344 (345)
-|.
T Consensus 416 YHr 418 (423)
T COG5189 416 YHR 418 (423)
T ss_pred ecc
Confidence 664
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.50 E-value=5.2e-05 Score=38.90 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=21.9
Q ss_pred CcCCCCCccccCChHHHHHHhhhhcC
Q psy8793 296 PYQCPQCPMAYKTNISLSAHLMKHTG 321 (345)
Q Consensus 296 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 321 (345)
||.|..|++.|.+...|..|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 57899999999999999999887753
No 37
>KOG2785|consensus
Probab=97.33 E-value=0.00075 Score=57.13 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=49.7
Q ss_pred CcccccccccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCCCCCCccccCCCc---ccccChh
Q psy8793 150 KPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCE---KVYSCAS 226 (345)
Q Consensus 150 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~---~~f~~~~ 226 (345)
-|-.|-.|+..+.+...-..||..+|+-..- .=.+ ......|..=+...-+ ..+.|..|+ +.|.+..
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIP-----dreY-L~D~~GLl~YLgeKV~----~~~~CL~CN~~~~~f~sle 234 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIP-----DREY-LTDEKGLLKYLGEKVG----IGFICLFCNELGRPFSSLE 234 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCC-----chHh-hhchhHHHHHHHHHhc----cCceEEEeccccCcccccH
Confidence 3578999999999999999999998875210 0011 1222222222222222 348888888 9999999
Q ss_pred hHHHHHHH
Q psy8793 227 SLTKHMKA 234 (345)
Q Consensus 227 ~l~~H~~~ 234 (345)
..+.||..
T Consensus 235 avr~HM~~ 242 (390)
T KOG2785|consen 235 AVRAHMRD 242 (390)
T ss_pred HHHHHHhh
Confidence 99999875
No 38
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.10 E-value=0.0005 Score=34.57 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=9.8
Q ss_pred ecCcCccccCChHHHHHHHHH
Q psy8793 270 KCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 270 ~C~~C~~~f~~~~~l~~H~~~ 290 (345)
.|+.|++.|.+.+.|..|++.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCcchhCCHHHHHHHHHH
Confidence 344444444444444444443
No 39
>KOG2231|consensus
Probab=97.04 E-value=0.0021 Score=59.33 Aligned_cols=117 Identities=21% Similarity=0.471 Sum_probs=65.6
Q ss_pred ccccccccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCCCCCCccccCCCcc---ccc-----
Q psy8793 152 HTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEK---VYS----- 223 (345)
Q Consensus 152 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~---~f~----- 223 (345)
+.|.+|+..|.... ..-.|. .| ..|.+...|+.|+..-|.. +.|..|-. .|.
T Consensus 100 ~~C~~C~~~~~~~~------------~~~~~~--~c-~~~~s~~~Lk~H~~~~H~~-----~~c~lC~~~~kif~~e~k~ 159 (669)
T KOG2231|consen 100 HSCHICDRRFRALY------------NKKECL--HC-TEFKSVENLKNHMRDQHKL-----HLCSLCLQNLKIFINERKL 159 (669)
T ss_pred hhcCccccchhhhc------------ccCCCc--cc-cchhHHHHHHHHHHHhhhh-----hccccccccceeeeeeeeh
Confidence 67888888763211 011232 45 5666666677776554443 44444422 121
Q ss_pred -ChhhHHHHHHHhcC-CCC----ccCccccccCCChhHHHHHhhhhcCCceeecCcC------ccccCChHHHHHHHHHh
Q psy8793 224 -CASSLTKHMKARLG-RQP----VSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKC------DKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 224 -~~~~l~~H~~~~~~-~~~----~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C------~~~f~~~~~l~~H~~~h 291 (345)
+...|..|++.-.. +.. --|..|...|.....|..|++..| |.|.+| +.-|.+.+.|..|.+.+
T Consensus 160 Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~ 235 (669)
T KOG2231|consen 160 YTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKG 235 (669)
T ss_pred ehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhc
Confidence 23456666654322 221 236677777777777777777666 555555 34566777777777765
Q ss_pred C
Q psy8793 292 M 292 (345)
Q Consensus 292 ~ 292 (345)
+
T Consensus 236 H 236 (669)
T KOG2231|consen 236 H 236 (669)
T ss_pred C
Confidence 4
No 40
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.03 E-value=0.00066 Score=34.12 Aligned_cols=24 Identities=33% Similarity=0.865 Sum_probs=20.7
Q ss_pred cCCCCCccccCChHHHHHHhhhhc
Q psy8793 297 YQCPQCPMAYKTNISLSAHLMKHT 320 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~~H~~~h~ 320 (345)
|.|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 579999999999999999988664
No 41
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.91 E-value=0.00021 Score=35.80 Aligned_cols=22 Identities=32% Similarity=0.883 Sum_probs=13.5
Q ss_pred ccCCCCCCCCCCCchhHHHHhh
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRI 29 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~ 29 (345)
|.|.+|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666654
No 42
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.89 E-value=0.001 Score=32.90 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=10.2
Q ss_pred eecCcCccccCChHHHHHHHHHh
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
|+|+.|+.... .+.|..|++.|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 44555555554 55555555543
No 43
>PRK04860 hypothetical protein; Provisional
Probab=96.89 E-value=0.00046 Score=52.38 Aligned_cols=37 Identities=24% Similarity=0.597 Sum_probs=21.1
Q ss_pred eeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCC
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKT 308 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 308 (345)
+|.|. |+. ....+.+|.++|+++++|.|..|+..|..
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~ 155 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF 155 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence 46665 654 44455566666666666666666655543
No 44
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.89 E-value=0.0005 Score=34.01 Aligned_cols=24 Identities=33% Similarity=0.825 Sum_probs=18.3
Q ss_pred cCCCCCccccCChHHHHHHhhhhcC
Q psy8793 297 YQCPQCPMAYKTNISLSAHLMKHTG 321 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~~H~~~h~~ 321 (345)
|+|+.|++..+ ...|.+|++.|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 67999998888 8899999887653
No 45
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.87 E-value=0.00086 Score=33.52 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=13.4
Q ss_pred eecCcCccccCChHHHHHHHHH
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~ 290 (345)
|.|..|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666554
No 46
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.82 E-value=0.00076 Score=34.44 Aligned_cols=22 Identities=23% Similarity=0.730 Sum_probs=19.1
Q ss_pred ccCCcCCccccchhhhcccccc
Q psy8793 36 FTCNICSRKFTTYSQVRRSSNT 57 (345)
Q Consensus 36 ~~C~~C~~~f~~~~~l~~H~~~ 57 (345)
|.|.+|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7888999999999999888876
No 47
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.81 E-value=0.0021 Score=58.43 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=78.2
Q ss_pred ccccCCCcccccChhhHHHHHH--HhcCC--CCccCc--cccccCCChhHHHHHhhhhcCCceeecCc--CccccCChH-
Q psy8793 212 RFPCDKCEKVYSCASSLTKHMK--ARLGR--QPVSCD--ICHKEFTHPSSVLYHKQSIHNNEIFKCTK--CDKVFQHIQ- 282 (345)
Q Consensus 212 ~~~C~~C~~~f~~~~~l~~H~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~- 282 (345)
++.|..|...|.....+..|.+ .|.++ .++.|+ .|++.|.....+..|...+.+..++.+.. +...+....
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence 5788888888888888888888 78888 888888 78888888888888888888766655533 333332222
Q ss_pred ----------------------------------HHHHHHHHhCCCC--CcCCCCCccccCChHHHHHHhhhhcCCCccc
Q psy8793 283 ----------------------------------LLNRHQLVHMDTR--PYQCPQCPMAYKTNISLSAHLMKHTGAKPYV 326 (345)
Q Consensus 283 ----------------------------------~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~ 326 (345)
.+..|...|.... .+.+..|...|.....+..|++.|....++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (467)
T COG5048 369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLL 448 (467)
T ss_pred CCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCcee
Confidence 2222222222212 3556777777777777777777776665555
Q ss_pred ccc
Q psy8793 327 CEI 329 (345)
Q Consensus 327 C~~ 329 (345)
|..
T Consensus 449 ~~~ 451 (467)
T COG5048 449 CSI 451 (467)
T ss_pred ecc
Confidence 533
No 48
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.80 E-value=0.0018 Score=37.59 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=15.1
Q ss_pred CceeecCcCccccCChHHHHHHHHHhCCCC
Q psy8793 266 NEIFKCTKCDKVFQHIQLLNRHQLVHMDTR 295 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 295 (345)
+.|..|++|+..+.+..+|.+|+...++.+
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence 445666666666666666666665555444
No 49
>PRK04860 hypothetical protein; Provisional
Probab=96.73 E-value=0.00083 Score=51.01 Aligned_cols=40 Identities=25% Similarity=0.640 Sum_probs=32.8
Q ss_pred CCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhccccc
Q psy8793 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRS 338 (345)
Q Consensus 295 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 338 (345)
-+|.|. |+. ....+..|.++|+++++|.|..|+..|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 368898 887 6678889999999999999999998877544
No 50
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.63 E-value=0.001 Score=38.58 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=19.6
Q ss_pred HHHHhhh-cCCCCccCCcCCccccchhhhccccccccc
Q psy8793 24 KEHFRIH-TGEKPFTCNICSRKFTTYSQVRRSSNTSAR 60 (345)
Q Consensus 24 ~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ 60 (345)
..+.+.+ ..+.|-.|++|+..+....+|++|+...|.
T Consensus 12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence 3444333 345677888888888888888888876654
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.59 E-value=0.00098 Score=34.03 Aligned_cols=21 Identities=24% Similarity=0.771 Sum_probs=13.7
Q ss_pred cccccchhhccccchhhhccC
Q psy8793 325 YVCEICNKVLTHRSSLISHYR 345 (345)
Q Consensus 325 ~~C~~C~~~f~~~~~l~~H~r 345 (345)
|.|..|++.|.+...|..||+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 556666666666666666664
No 52
>KOG2482|consensus
Probab=96.51 E-value=0.021 Score=47.75 Aligned_cols=154 Identities=18% Similarity=0.329 Sum_probs=92.7
Q ss_pred Cccccccccccc-CCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCCCCCCccccCCCcccccChhhH
Q psy8793 150 KPHTCELCSKGF-LSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSL 228 (345)
Q Consensus 150 ~~~~C~~C~~~f-~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l 228 (345)
...+|-.|+..+ ..++.+..|+-.-|+-.- +-......-..|..|++..-. .+.|-.|.+.|.....|
T Consensus 143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lni------GlpDniVyvnelLehLkekL~-----r~~CLyCekifrdkntL 211 (423)
T KOG2482|consen 143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNI------GLPDNIVYVNELLEHLKEKLE-----RLRCLYCEKIFRDKNTL 211 (423)
T ss_pred eeeEEEEecchhcccHHHHHHHHHHHhhhcc------CCCcceeeHHHHHHHHHHHHh-----hheeeeeccccCCcHHH
Confidence 346788887663 566677777765444321 233445555677777766433 38999999999999999
Q ss_pred HHHHHHh--cCCCC--------ccCcc--ccccCCChhHHHHHh--hhh---------------cCCce--eecCcCccc
Q psy8793 229 TKHMKAR--LGRQP--------VSCDI--CHKEFTHPSSVLYHK--QSI---------------HNNEI--FKCTKCDKV 277 (345)
Q Consensus 229 ~~H~~~~--~~~~~--------~~C~~--C~~~f~~~~~l~~H~--~~~---------------~~~~~--~~C~~C~~~ 277 (345)
..||+.. ..-.| |.=.. -+++ ......+. ... .+..+ ..|-+|...
T Consensus 212 keHMrkK~HrrinPknreYDkfyiINY~ev~ks---~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~ 288 (423)
T KOG2482|consen 212 KEHMRKKRHRRINPKNREYDKFYIINYLEVGKS---WTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNF 288 (423)
T ss_pred HHHHHhccCcccCCCccccceEEEEeHhhcCCc---cchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccc
Confidence 9999853 22111 11000 0000 00001111 000 01112 589999999
Q ss_pred cCChHHHHHHHHHhCC---------------------------CCCcCCCCCccccCChHHHHHHhh
Q psy8793 278 FQHIQLLNRHQLVHMD---------------------------TRPYQCPQCPMAYKTNISLSAHLM 317 (345)
Q Consensus 278 f~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~ 317 (345)
..+...|..||+.-+. .+.-.|..|.-.|-....|+.||.
T Consensus 289 ~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 289 YENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV 355 (423)
T ss_pred hhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence 9999999999986321 123467788888888888888876
No 53
>KOG2785|consensus
Probab=96.47 E-value=0.017 Score=49.26 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=99.0
Q ss_pred cccccccccccCCHHHHHHHHhhh-cC--CCCccccc-cccCccccchHhHHHHhhhhcCCCCCCccccCCCcccccChh
Q psy8793 151 PHTCELCSKGFLSAESYKCHLRRH-KG--EKPVTCTF-ENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCAS 226 (345)
Q Consensus 151 ~~~C~~C~~~f~~~~~l~~H~~~~-~~--~~~~~C~~-~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~ 226 (345)
.|.|.-|...|.+...-+.|+++- |. .+.-.-+. +.--..|..+.....-......+....++.|..|.+.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 489999999999999999999752 11 11000000 122234444332222222222233346789999999999999
Q ss_pred hHHHHHHHhcC----CC-------------Ccc-------------CccccccCCChhHHHHHhh------------hhc
Q psy8793 227 SLTKHMKARLG----RQ-------------PVS-------------CDICHKEFTHPSSVLYHKQ------------SIH 264 (345)
Q Consensus 227 ~l~~H~~~~~~----~~-------------~~~-------------C~~C~~~f~~~~~l~~H~~------------~~~ 264 (345)
....|+..-.. .+ .+. +..+............+.. ...
T Consensus 83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~ 162 (390)
T KOG2785|consen 83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED 162 (390)
T ss_pred hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence 98888864211 00 111 1111111111011111100 001
Q ss_pred CCceeecCcCccccCChHHHHHHHHHhCCC-----------------------CCcCCCCCc---cccCChHHHHHHhhh
Q psy8793 265 NNEIFKCTKCDKVFQHIQLLNRHQLVHMDT-----------------------RPYQCPQCP---MAYKTNISLSAHLMK 318 (345)
Q Consensus 265 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~ 318 (345)
...|-.|-+|++.+.+-..-..||..++|- ..|.|..|+ +.|.+....+.||..
T Consensus 163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 123567999999999999999999987763 238899999 899999999999874
No 54
>KOG1146|consensus
Probab=96.15 E-value=0.0013 Score=64.50 Aligned_cols=55 Identities=24% Similarity=0.477 Sum_probs=47.5
Q ss_pred CCCCccCCCCCCCCCCCchhHHHHhh-hc------------------------CCCCccCCcCCccccchhhhccccccc
Q psy8793 4 GIKQYQCSQCPKAFNQKGNLKEHFRI-HT------------------------GEKPFTCNICSRKFTTYSQVRRSSNTS 58 (345)
Q Consensus 4 ~~~~~~C~~C~~~f~~~~~l~~H~~~-h~------------------------~~~~~~C~~C~~~f~~~~~l~~H~~~~ 58 (345)
-.+.|+|+.|++.|+....|..||++ |. ..++|.|..|...+...++|..||+..
T Consensus 462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~ 541 (1406)
T KOG1146|consen 462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSD 541 (1406)
T ss_pred ccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHH
Confidence 34789999999999999999999987 21 235699999999999999999999874
No 55
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.98 E-value=0.017 Score=48.35 Aligned_cols=129 Identities=22% Similarity=0.336 Sum_probs=85.1
Q ss_pred ccccc--cccccCCHHHHHHHHhhhcCCCCcccccc-------ccCccccchHhHHHHhhhhcCCCCC-CccccCCCccc
Q psy8793 152 HTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFE-------NCTETFVESWAMRKHVRTCHNKPTV-NRFPCDKCEKV 221 (345)
Q Consensus 152 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~~-------~C~~~f~~~~~l~~H~~~~~~~~~~-~~~~C~~C~~~ 221 (345)
|.||. |.........|..|.+..++. +.|... .|.-..-++..|..|...-..+... +--.|..|...
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~ 229 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY 229 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence 77875 777777788999999887654 444410 1222333556677776654443222 22359999999
Q ss_pred ccChhhHHHHHHHhcCCCCccCcccccc-------CCChhHHHHHhhhhcCCceeecCc--Cc----cccCChHHHHHHH
Q psy8793 222 YSCASSLTKHMKARLGRQPVSCDICHKE-------FTHPSSVLYHKQSIHNNEIFKCTK--CD----KVFQHIQLLNRHQ 288 (345)
Q Consensus 222 f~~~~~l~~H~~~~~~~~~~~C~~C~~~-------f~~~~~l~~H~~~~~~~~~~~C~~--C~----~~f~~~~~l~~H~ 288 (345)
|=+-..|..|++..+.. |-+|+.+ |.+...|.+|.+..| |.|.+ |. ..|.....|..|+
T Consensus 230 FYdDDEL~~HcR~~HE~----ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~ 301 (493)
T COG5236 230 FYDDDELRRHCRLRHEA----CHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHL 301 (493)
T ss_pred ecChHHHHHHHHhhhhh----hhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHH
Confidence 99889999999887553 6666643 677778888877655 66644 32 3578888888887
Q ss_pred HH
Q psy8793 289 LV 290 (345)
Q Consensus 289 ~~ 290 (345)
.-
T Consensus 302 ~~ 303 (493)
T COG5236 302 TR 303 (493)
T ss_pred HH
Confidence 53
No 56
>KOG2231|consensus
Probab=95.94 E-value=0.015 Score=53.95 Aligned_cols=112 Identities=21% Similarity=0.377 Sum_probs=77.6
Q ss_pred cccCCCcccccChhhHHHHHHHhcCCCCccCccccc---------cCCChhHHHHHhhhhcC-Cce----eecCcCcccc
Q psy8793 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHK---------EFTHPSSVLYHKQSIHN-NEI----FKCTKCDKVF 278 (345)
Q Consensus 213 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~---------~f~~~~~l~~H~~~~~~-~~~----~~C~~C~~~f 278 (345)
..|..| -.|.+...|+.|+...|.- +.|.+|-. ..-++..|..|+..--. ++. -.|..|...|
T Consensus 116 ~~~~~c-~~~~s~~~Lk~H~~~~H~~--~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~f 192 (669)
T KOG2231|consen 116 KECLHC-TEFKSVENLKNHMRDQHKL--HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERF 192 (669)
T ss_pred CCCccc-cchhHHHHHHHHHHHhhhh--hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhh
Confidence 568888 7888889999999665443 45555442 22356678888764433 221 4799999999
Q ss_pred CChHHHHHHHHHhCCCCCcCC---CCCccccCChHHHHHHhhhhcCCCccccc--cchh
Q psy8793 279 QHIQLLNRHQLVHMDTRPYQC---PQCPMAYKTNISLSAHLMKHTGAKPYVCE--ICNK 332 (345)
Q Consensus 279 ~~~~~l~~H~~~h~~~~~~~C---~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~ 332 (345)
.....|.+|++.++.... -| +.++..|.....|..|.+.+| |.|+ .|--
T Consensus 193 ld~~el~rH~~~~h~~ch-fC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~ 246 (669)
T KOG2231|consen 193 LDDDELYRHLRFDHEFCH-FCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRT 246 (669)
T ss_pred ccHHHHHHhhccceehee-ecCcccccchhcccchHHHHHhhhcC----cccccccccc
Confidence 999999999987664321 12 344678888999999988776 5665 5543
No 57
>KOG2482|consensus
Probab=95.92 E-value=0.02 Score=47.92 Aligned_cols=124 Identities=17% Similarity=0.359 Sum_probs=78.3
Q ss_pred CCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCC--CCCC-c----cccCCCcccccChhhHHHHHH-
Q psy8793 162 LSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNK--PTVN-R----FPCDKCEKVYSCASSLTKHMK- 233 (345)
Q Consensus 162 ~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~--~~~~-~----~~C~~C~~~f~~~~~l~~H~~- 233 (345)
.....|..|++..... ++|-+ |.+.|+.+..|+.||+...-. .+.+ . |.-+ -...-+++.....+..
T Consensus 180 VyvnelLehLkekL~r--~~CLy--CekifrdkntLkeHMrkK~HrrinPknreYDkfyiIN-Y~ev~ks~t~~~~e~dr 254 (423)
T KOG2482|consen 180 VYVNELLEHLKEKLER--LRCLY--CEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIIN-YLEVGKSWTIVHSEDDR 254 (423)
T ss_pred eeHHHHHHHHHHHHhh--heeee--eccccCCcHHHHHHHHhccCcccCCCccccceEEEEe-HhhcCCccchhhhhhhh
Confidence 3456678888765533 67775 999999999999999874321 1111 1 1111 0111112222222221
Q ss_pred -Hh--c-------------CCC--CccCccccccCCChhHHHHHhhhhcCC---------------------------ce
Q psy8793 234 -AR--L-------------GRQ--PVSCDICHKEFTHPSSVLYHKQSIHNN---------------------------EI 268 (345)
Q Consensus 234 -~~--~-------------~~~--~~~C~~C~~~f~~~~~l~~H~~~~~~~---------------------------~~ 268 (345)
+- . +.. ...|-.|.....+...|..|+...|.- ..
T Consensus 255 et~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~ 334 (423)
T KOG2482|consen 255 ETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKK 334 (423)
T ss_pred hhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhc
Confidence 10 0 111 257999999999999999999887741 12
Q ss_pred eecCcCccccCChHHHHHHHHH
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~ 290 (345)
-.|-.|.-+|..+..|..||..
T Consensus 335 ~~c~~cd~~F~~e~~l~~hm~e 356 (423)
T KOG2482|consen 335 SRCAECDLSFWKEPGLLIHMVE 356 (423)
T ss_pred cccccccccccCcchhhhhccc
Confidence 4688899999999999999875
No 58
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.57 E-value=0.012 Score=49.12 Aligned_cols=134 Identities=20% Similarity=0.353 Sum_probs=85.5
Q ss_pred CccccccccCccccchHhHHHHhhhhcCCCCCCccccCCCc---ccccCh------hhHHHHHHHhcCCCCc----cCcc
Q psy8793 179 PVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCE---KVYSCA------SSLTKHMKARLGRQPV----SCDI 245 (345)
Q Consensus 179 ~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~---~~f~~~------~~l~~H~~~~~~~~~~----~C~~ 245 (345)
.|.|+...|.........|+.|.+..|+. +.|..|- +.|... ..|..|...-..+..| .|..
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~-----~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F 225 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF-----VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF 225 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc-----EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhh
Confidence 37788778888888888889998887776 7787774 345433 3455554433222223 4888
Q ss_pred ccccCCChhHHHHHhhhhcCCceeecCcCcc-------ccCChHHHHHHHHHhCCCCCc-CCCCCc-cccCChHHHHHHh
Q psy8793 246 CHKEFTHPSSVLYHKQSIHNNEIFKCTKCDK-------VFQHIQLLNRHQLVHMDTRPY-QCPQCP-MAYKTNISLSAHL 316 (345)
Q Consensus 246 C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~-------~f~~~~~l~~H~~~h~~~~~~-~C~~C~-~~f~~~~~l~~H~ 316 (345)
|..-|-+...|..|++..|. .|-+|++ -|.+..+|..|.+.-+-.-.+ -|.+-. ..|.+...|+.|+
T Consensus 226 C~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~el~~h~ 301 (493)
T COG5236 226 CKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHL 301 (493)
T ss_pred ccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEEeccHHHHHHHH
Confidence 88888888888888876663 3444443 377888888887643222111 132222 5678888888887
Q ss_pred hhhcC
Q psy8793 317 MKHTG 321 (345)
Q Consensus 317 ~~h~~ 321 (345)
...++
T Consensus 302 ~~~h~ 306 (493)
T COG5236 302 TRFHK 306 (493)
T ss_pred HHHhh
Confidence 65544
No 59
>KOG1146|consensus
Probab=95.40 E-value=0.0047 Score=60.74 Aligned_cols=127 Identities=17% Similarity=0.287 Sum_probs=66.9
Q ss_pred CccccCCCcccccChhhHHHHHHHhcCCCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHH
Q psy8793 211 NRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 211 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 290 (345)
+.++|++|+..|+....|..|++..+.+..- .+|.. +.+...+.+-....-+.++|.|..|..++....+|..|++.
T Consensus 464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~-gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCKA-GQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccccCCccchhhhhHHHhhhcccccccccch--hHhHh-ccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence 4466666666666666666666653322110 11111 11111111111112235678888888888888888888774
Q ss_pred --hCCC-----------------------------------------CCcCCCCCccccCChHHHHHHhh-hhcCCCccc
Q psy8793 291 --HMDT-----------------------------------------RPYQCPQCPMAYKTNISLSAHLM-KHTGAKPYV 326 (345)
Q Consensus 291 --h~~~-----------------------------------------~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~ 326 (345)
|..+ -.+.|..|++-.+-..+|+-|+. .++...|--
T Consensus 541 ~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~ 620 (1406)
T KOG1146|consen 541 DLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSL 620 (1406)
T ss_pred HhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHH
Confidence 3110 12566666666666666666655 344444455
Q ss_pred cccchhhccccchh
Q psy8793 327 CEICNKVLTHRSSL 340 (345)
Q Consensus 327 C~~C~~~f~~~~~l 340 (345)
|-.|+-.+.....+
T Consensus 621 ~Lq~~it~~l~~~~ 634 (1406)
T KOG1146|consen 621 VLQQNITSSLASLL 634 (1406)
T ss_pred Hhhhcchhhccccc
Confidence 55555555444443
No 60
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.95 E-value=0.025 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=12.0
Q ss_pred ecCcCccccCChHHHHHHHH
Q psy8793 270 KCTKCDKVFQHIQLLNRHQL 289 (345)
Q Consensus 270 ~C~~C~~~f~~~~~l~~H~~ 289 (345)
.|+.||..| ..+.|..|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 566677766 4555666654
No 61
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=94.83 E-value=0.019 Score=30.77 Aligned_cols=26 Identities=23% Similarity=0.860 Sum_probs=21.0
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRK 44 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 44 (345)
.|.|.+||..|.... .++.||+|+..
T Consensus 1 ~~~C~~CGy~y~~~~------------~~~~CP~Cg~~ 26 (33)
T cd00350 1 KYVCPVCGYIYDGEE------------APWVCPVCGAP 26 (33)
T ss_pred CEECCCCCCEECCCc------------CCCcCcCCCCc
Confidence 378999999987543 68999999863
No 62
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=94.72 E-value=0.016 Score=31.53 Aligned_cols=22 Identities=18% Similarity=0.631 Sum_probs=14.9
Q ss_pred CccCCCCCCCCCCCchhHHHHh
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFR 28 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~ 28 (345)
+|.|.+|++.|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 5667777777776666666664
No 63
>KOG4173|consensus
Probab=94.46 E-value=0.017 Score=44.52 Aligned_cols=79 Identities=22% Similarity=0.556 Sum_probs=55.8
Q ss_pred CccccCC--CcccccChhhHHHHHHHhcCCCCccCccccccCCChhHHHHHhhhhcC----------CceeecCc--Ccc
Q psy8793 211 NRFPCDK--CEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHN----------NEIFKCTK--CDK 276 (345)
Q Consensus 211 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~----------~~~~~C~~--C~~ 276 (345)
..+.|+. |-..|.+...+..|....++. .|+.|.+.|.+...|..|+...|+ ...|+|-. |+.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~ 154 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE 154 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence 4466654 556777777777777766664 588888888888888888765553 44588844 888
Q ss_pred ccCChHHHHHHHH-HhC
Q psy8793 277 VFQHIQLLNRHQL-VHM 292 (345)
Q Consensus 277 ~f~~~~~l~~H~~-~h~ 292 (345)
.|.+..+-..|+- +|.
T Consensus 155 KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 155 KFKTSRDRKDHMIRMHK 171 (253)
T ss_pred hhhhhhhhhhHHHHhcc
Confidence 8888888888864 564
No 64
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.39 E-value=0.045 Score=49.74 Aligned_cols=56 Identities=29% Similarity=0.624 Sum_probs=51.8
Q ss_pred CCccCCCCCCCCCCCchhHHHHh--hhcCC--CCccCC--cCCccccchhhhcccccccccc
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFR--IHTGE--KPFTCN--ICSRKFTTYSQVRRSSNTSARN 61 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~ 61 (345)
.++.|..|...|.....|..|.. .|..+ +++.|+ .|++.|.+...+..|...+...
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI 349 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC
Confidence 47899999999999999999999 79999 999999 8999999999999999887755
No 65
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=94.18 E-value=0.11 Score=37.10 Aligned_cols=25 Identities=28% Similarity=0.756 Sum_probs=16.8
Q ss_pred cCC----CCCccccCChHHHHHHhhhhcC
Q psy8793 297 YQC----PQCPMAYKTNISLSAHLMKHTG 321 (345)
Q Consensus 297 ~~C----~~C~~~f~~~~~l~~H~~~h~~ 321 (345)
|.| +.|++.+.+...+++|++.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 667 7777777777777777665553
No 66
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.13 E-value=0.047 Score=27.11 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=16.2
Q ss_pred cCCCCCccccCChHHHHHHhhh
Q psy8793 297 YQCPQCPMAYKTNISLSAHLMK 318 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~~H~~~ 318 (345)
..|+.||+.| ....|..|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4688999998 66778888754
No 67
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=94.01 E-value=0.046 Score=29.68 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=14.9
Q ss_pred eeecCcCccccCChHHHHHHHH
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQL 289 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~ 289 (345)
+|.|..|+..|.+...+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 3667777777776777777764
No 68
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=93.74 E-value=0.05 Score=29.15 Aligned_cols=11 Identities=18% Similarity=0.966 Sum_probs=5.9
Q ss_pred eecCcCccccC
Q psy8793 269 FKCTKCDKVFQ 279 (345)
Q Consensus 269 ~~C~~C~~~f~ 279 (345)
|+|..||..+.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 45555555543
No 69
>KOG4173|consensus
Probab=93.71 E-value=0.024 Score=43.79 Aligned_cols=78 Identities=27% Similarity=0.599 Sum_probs=54.6
Q ss_pred CccCcc--ccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHH-h---------CCCCCcCC--CCCccc
Q psy8793 240 PVSCDI--CHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLV-H---------MDTRPYQC--PQCPMA 305 (345)
Q Consensus 240 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C--~~C~~~ 305 (345)
.+.|++ |...|.+...+..|....|+. -|.+|.+.|.+.-.|-.|+.. | .|..-|+| ..|+..
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K 155 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK 155 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence 456765 667777777777777666655 688888888888888888764 4 34445777 667777
Q ss_pred cCChHHHHHHhhhhc
Q psy8793 306 YKTNISLSAHLMKHT 320 (345)
Q Consensus 306 f~~~~~l~~H~~~h~ 320 (345)
|.+...-..|+-.-+
T Consensus 156 FkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 156 FKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhHHHHhc
Confidence 777777777776443
No 70
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.92 E-value=0.17 Score=35.56 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=11.6
Q ss_pred ccccCCCcccccChhhHHH
Q psy8793 212 RFPCDKCEKVYSCASSLTK 230 (345)
Q Consensus 212 ~~~C~~C~~~f~~~~~l~~ 230 (345)
|..|+.|+....+...|.+
T Consensus 15 P~~CpiCgLtLVss~HLAR 33 (112)
T TIGR00622 15 PVECPICGLTLILSTHLAR 33 (112)
T ss_pred CCcCCcCCCEEeccchHHH
Confidence 4566777766666655544
No 71
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=91.98 E-value=0.28 Score=34.91 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=46.0
Q ss_pred CccccCCCcccccChhhHHHHHHHhcCCC-CccCccccccCCChhHHHH---HhhhhcC----------Cceeec----C
Q psy8793 211 NRFPCDKCEKVYSCASSLTKHMKARLGRQ-PVSCDICHKEFTHPSSVLY---HKQSIHN----------NEIFKC----T 272 (345)
Q Consensus 211 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~-~~~C~~C~~~f~~~~~l~~---H~~~~~~----------~~~~~C----~ 272 (345)
+-.+|..|+..... ..+..|++..+... ...-..=...+.....|.. .+..-.. -.-|.| +
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~ 88 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP 88 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence 45789999998875 78999998544321 1100000000000000000 0000000 012899 9
Q ss_pred cCccccCChHHHHHHHHHhCC
Q psy8793 273 KCDKVFQHIQLLNRHQLVHMD 293 (345)
Q Consensus 273 ~C~~~f~~~~~l~~H~~~h~~ 293 (345)
.|++.+.+...+..|++.++|
T Consensus 89 ~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 89 HCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCCcEeccHHHHHHHHHHhcC
Confidence 999999999999999998764
No 72
>KOG2893|consensus
Probab=91.90 E-value=0.045 Score=43.36 Aligned_cols=45 Identities=27% Similarity=0.585 Sum_probs=33.5
Q ss_pred cCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHHHHH-hhhh
Q psy8793 271 CTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAH-LMKH 319 (345)
Q Consensus 271 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h 319 (345)
|.+|+..|.++..|..|++. +-|+|-+|.+..-+...|..| +++|
T Consensus 13 cwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred eeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhh
Confidence 78888888888888888664 337888888777676777766 4444
No 73
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.04 E-value=0.072 Score=43.02 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=29.8
Q ss_pred CCCccCCCCCCCCCCCchhHHHHhh---hc-------CCCC-----ccCCcCCccccch
Q psy8793 5 IKQYQCSQCPKAFNQKGNLKEHFRI---HT-------GEKP-----FTCNICSRKFTTY 48 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~---h~-------~~~~-----~~C~~C~~~f~~~ 48 (345)
++.++||+|+..|.+..-.....+. .. +..| ..||.||+.|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4678999999999986555545432 11 1122 4699999988653
No 74
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=90.78 E-value=0.16 Score=27.42 Aligned_cols=26 Identities=27% Similarity=0.664 Sum_probs=20.3
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRK 44 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 44 (345)
.|.|.+||..+... ..|..|++|+..
T Consensus 2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGE------------EAPEKCPICGAP 27 (34)
T ss_pred eEECCCCCCEeECC------------cCCCcCcCCCCc
Confidence 58999999988653 256899999863
No 75
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=90.00 E-value=0.085 Score=31.28 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=14.2
Q ss_pred CCCccCCcCCccccchhhhccccccccc
Q psy8793 33 EKPFTCNICSRKFTTYSQVRRSSNTSAR 60 (345)
Q Consensus 33 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~ 60 (345)
+.-+.||-|+..|....+..+|.+..|.
T Consensus 15 E~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 15 EEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred ceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 3444555555555555555555544443
No 76
>KOG2186|consensus
Probab=89.94 E-value=0.14 Score=41.25 Aligned_cols=47 Identities=15% Similarity=0.513 Sum_probs=39.2
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchhhhcccccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNT 57 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 57 (345)
|.|.+||.+..- ..+..|+..-++. -|.|..|++.|.. .+...|..-
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn~-~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRNA-YFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccCC-eeEEeeccccccc-chhhhhhhh
Confidence 899999999974 6888899988874 5999999999987 667777654
No 77
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=89.73 E-value=0.18 Score=25.28 Aligned_cols=9 Identities=33% Similarity=1.191 Sum_probs=4.5
Q ss_pred CCCCCcccc
Q psy8793 298 QCPQCPMAY 306 (345)
Q Consensus 298 ~C~~C~~~f 306 (345)
.|+.||..|
T Consensus 16 ~Cp~CG~~F 24 (26)
T PF10571_consen 16 FCPHCGYDF 24 (26)
T ss_pred cCCCCCCCC
Confidence 355555544
No 78
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.69 E-value=0.6 Score=32.92 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=51.5
Q ss_pred ccccccccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCCCCCCccccCCCcccccChhhHHHH
Q psy8793 152 HTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKH 231 (345)
Q Consensus 152 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H 231 (345)
|.|+.|+... -+.|..|+ .|+-+..+...|.+- -||-.+. .+|. ....
T Consensus 2 Y~CPrC~skv--------------C~LP~~Cp--iCgLtLVss~HLARS--yHHLfPl-~~f~---------ev~~---- 49 (112)
T TIGR00622 2 YFCPQCRAKV--------------CELPVECP--ICGLTLILSTHLARS--YHHLFPL-KAFQ---------EIPL---- 49 (112)
T ss_pred ccCCCCCCCc--------------cCCCCcCC--cCCCEEeccchHHHh--hhccCCC-cccc---------cccc----
Confidence 6777777654 45677776 688887777666643 2222211 1111 0000
Q ss_pred HHHhcCCCCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHHh
Q psy8793 232 MKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 232 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
-.......|-.|...|....... .........|+|+.|...|--.-++-.|..+|
T Consensus 50 ---~~~~~~~~C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 50 ---EEYNGSRFCFGCQGPFPKPPVSP--FDELKDSHRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred ---cccCCCCcccCcCCCCCCccccc--ccccccccceeCCCCCCccccccchhhhhhcc
Confidence 00111123666666665432100 00012334577777777776666666665554
No 79
>KOG2893|consensus
Probab=89.51 E-value=0.12 Score=41.04 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=39.7
Q ss_pred cCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchhhhcccccccccc
Q psy8793 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARN 61 (345)
Q Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~ 61 (345)
.|=.|+..|....-|.+|++.- -|+|-+|.++..+--.|..|....|..
T Consensus 12 wcwycnrefddekiliqhqkak----hfkchichkkl~sgpglsihcmqvhke 60 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIHCMQVHKE 60 (341)
T ss_pred eeeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceeehhhhhhh
Confidence 5889999999999999997743 399999999888877888777655543
No 80
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=88.59 E-value=0.19 Score=29.87 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=11.4
Q ss_pred CceeecCcCccccCChHHHHHHH
Q psy8793 266 NEIFKCTKCDKVFQHIQLLNRHQ 288 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~l~~H~ 288 (345)
+.-+.||.|+..|....++.+|+
T Consensus 15 E~~lrCPRC~~~FR~~K~Y~RHV 37 (65)
T COG4049 15 EEFLRCPRCGMVFRRRKDYIRHV 37 (65)
T ss_pred ceeeeCCchhHHHHHhHHHHHHh
Confidence 33445555555555555555554
No 81
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=88.26 E-value=0.7 Score=35.34 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=26.3
Q ss_pred HHhhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCcccc
Q psy8793 258 YHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAY 306 (345)
Q Consensus 258 ~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 306 (345)
.-+....+..-|.|+.|+..|+...++. ..|.||.||...
T Consensus 99 ~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 99 EKLEFETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML 138 (158)
T ss_pred HHHhhccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence 3334444566688888888887777664 257888888553
No 82
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=86.51 E-value=0.85 Score=35.63 Aligned_cols=39 Identities=26% Similarity=0.588 Sum_probs=26.3
Q ss_pred hhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccC
Q psy8793 260 KQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYK 307 (345)
Q Consensus 260 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 307 (345)
+....+..-|.|+.|+..|+...++. ..|.|+.||....
T Consensus 109 l~~e~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 109 LEEEENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE 147 (178)
T ss_pred hhhccCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence 33344556688888888887776653 3688888886544
No 83
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=86.16 E-value=0.68 Score=32.66 Aligned_cols=30 Identities=23% Similarity=0.671 Sum_probs=24.2
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccch
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTY 48 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 48 (345)
..|+.||..|-.. +..|..||.||..|.-.
T Consensus 10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence 4899999999652 23689999999999765
No 84
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=84.91 E-value=0.62 Score=25.75 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=3.6
Q ss_pred cccccchhh
Q psy8793 325 YVCEICNKV 333 (345)
Q Consensus 325 ~~C~~C~~~ 333 (345)
..|+.|+..
T Consensus 26 v~C~~C~~~ 34 (38)
T TIGR02098 26 VRCGKCGHV 34 (38)
T ss_pred EECCCCCCE
Confidence 334444433
No 85
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=84.62 E-value=0.74 Score=25.34 Aligned_cols=8 Identities=38% Similarity=1.244 Sum_probs=3.4
Q ss_pred cCcCcccc
Q psy8793 271 CTKCDKVF 278 (345)
Q Consensus 271 C~~C~~~f 278 (345)
|+.|+..|
T Consensus 5 CP~C~~~f 12 (37)
T PF13719_consen 5 CPNCQTRF 12 (37)
T ss_pred CCCCCceE
Confidence 44444444
No 86
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=84.48 E-value=0.71 Score=26.56 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=5.9
Q ss_pred eecCcCccccC
Q psy8793 269 FKCTKCDKVFQ 279 (345)
Q Consensus 269 ~~C~~C~~~f~ 279 (345)
|.|..||..|.
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 55555555553
No 87
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.96 E-value=0.2 Score=40.52 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=12.3
Q ss_pred ceeecCcCccccCChHHHHHHH
Q psy8793 267 EIFKCTKCDKVFQHIQLLNRHQ 288 (345)
Q Consensus 267 ~~~~C~~C~~~f~~~~~l~~H~ 288 (345)
+.+.||+|+..|.+...+....
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~ 25 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKI 25 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCc
Confidence 3456666666666555444443
No 88
>KOG2186|consensus
Probab=83.78 E-value=0.69 Score=37.38 Aligned_cols=44 Identities=25% Similarity=0.621 Sum_probs=19.9
Q ss_pred ccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHH
Q psy8793 241 VSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRH 287 (345)
Q Consensus 241 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H 287 (345)
|.|..|+.... +..+..|+...++ .-|-|-.|++.|.. ..+..|
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH 47 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNH 47 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhh
Confidence 44555554433 2334445544444 34455555555544 334444
No 89
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=83.57 E-value=1.4 Score=33.21 Aligned_cols=15 Identities=27% Similarity=0.879 Sum_probs=8.0
Q ss_pred CceeecCcCccccCC
Q psy8793 266 NEIFKCTKCDKVFQH 280 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~ 280 (345)
..-|.|+.|+..|..
T Consensus 97 ~~~Y~Cp~C~~~y~~ 111 (147)
T smart00531 97 NAYYKCPNCQSKYTF 111 (147)
T ss_pred CcEEECcCCCCEeeH
Confidence 344555555555543
No 90
>KOG2807|consensus
Probab=83.51 E-value=2.6 Score=35.57 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=14.6
Q ss_pred CCcCCCCCccccCChHHHHHHhhhh
Q psy8793 295 RPYQCPQCPMAYKTNISLSAHLMKH 319 (345)
Q Consensus 295 ~~~~C~~C~~~f~~~~~l~~H~~~h 319 (345)
..|+|+.|...|=.--+..-|...|
T Consensus 344 ~~y~C~~Ck~~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 344 GRYRCESCKNVFCLDCDVFIHESLH 368 (378)
T ss_pred CcEEchhccceeeccchHHHHhhhh
Confidence 3466777766666555555554444
No 91
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=83.40 E-value=0.89 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=14.9
Q ss_pred ccCCCCCCCCCCCchhHHHHhh
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRI 29 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~ 29 (345)
..|++|++.+ ....+..|+..
T Consensus 2 v~CPiC~~~v-~~~~in~HLD~ 22 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLDS 22 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHHH
Confidence 3688888888 45677777763
No 92
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=82.79 E-value=0.98 Score=34.52 Aligned_cols=25 Identities=24% Similarity=0.717 Sum_probs=17.1
Q ss_pred CceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCc
Q psy8793 266 NEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCP 303 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 303 (345)
++.|.|++||..+ -|+.|-+||.||
T Consensus 132 ~~~~vC~vCGy~~-------------~ge~P~~CPiCg 156 (166)
T COG1592 132 GKVWVCPVCGYTH-------------EGEAPEVCPICG 156 (166)
T ss_pred CCEEEcCCCCCcc-------------cCCCCCcCCCCC
Confidence 3367888887655 346677788887
No 93
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=82.48 E-value=0.55 Score=27.32 Aligned_cols=31 Identities=16% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
..|+|+.|+..|.-... ...+.|+.||..+.
T Consensus 2 ~~y~C~~CG~~~~~~~~----------~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 2 AEYKCARCGREVELDEY----------GTGVRCPYCGYRIL 32 (46)
T ss_pred CEEECCCCCCEEEECCC----------CCceECCCCCCeEE
Confidence 36899999999864211 11589999997653
No 94
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=82.03 E-value=0.48 Score=35.85 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=27.6
Q ss_pred ccCCCCCCCCCCC---chhHHHHhhhcCCCCccCCcCCccccchhhhcccc
Q psy8793 8 YQCSQCPKAFNQK---GNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSS 55 (345)
Q Consensus 8 ~~C~~C~~~f~~~---~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 55 (345)
++||.|+-.+... ..+.. .... .+.++|+.||++|++...+..=+
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~--~~~~-~~~~~c~~c~~~f~~~e~~~~~~ 48 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAED--GNAI-RRRRECLACGKRFTTFERVELVP 48 (154)
T ss_pred CcCCCCCCCCCEeEeccccCC--CCce-eeeeeccccCCcceEeEeccCcc
Confidence 4799999876321 11111 0011 12389999999999877765544
No 95
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=81.77 E-value=0.53 Score=24.92 Aligned_cols=11 Identities=18% Similarity=0.779 Sum_probs=5.8
Q ss_pred eecCcCccccC
Q psy8793 269 FKCTKCDKVFQ 279 (345)
Q Consensus 269 ~~C~~C~~~f~ 279 (345)
|.|..|+..+.
T Consensus 1 Y~C~~Cg~~~~ 11 (32)
T PF03604_consen 1 YICGECGAEVE 11 (32)
T ss_dssp EBESSSSSSE-
T ss_pred CCCCcCCCeeE
Confidence 45666665554
No 96
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=81.30 E-value=1.2 Score=24.32 Aligned_cols=9 Identities=22% Similarity=1.032 Sum_probs=3.9
Q ss_pred ecCcCcccc
Q psy8793 270 KCTKCDKVF 278 (345)
Q Consensus 270 ~C~~C~~~f 278 (345)
.|+.|+..|
T Consensus 4 ~Cp~C~~~y 12 (36)
T PF13717_consen 4 TCPNCQAKY 12 (36)
T ss_pred ECCCCCCEE
Confidence 344444444
No 97
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=81.00 E-value=0.58 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.657 Sum_probs=21.1
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRK 44 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 44 (345)
.|+|..|+..|.-..... ....-.|+.||..
T Consensus 5 ~y~C~~Cg~~fe~~~~~~-------~~~~~~CP~Cg~~ 35 (41)
T smart00834 5 EYRCEDCGHTFEVLQKIS-------DDPLATCPECGGD 35 (41)
T ss_pred EEEcCCCCCEEEEEEecC-------CCCCCCCCCCCCc
Confidence 388999999987432221 1345789999874
No 98
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=80.53 E-value=1.2 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=19.0
Q ss_pred CccCCCCCCCCC--CCchhHHHHhhhc
Q psy8793 7 QYQCSQCPKAFN--QKGNLKEHFRIHT 31 (345)
Q Consensus 7 ~~~C~~C~~~f~--~~~~l~~H~~~h~ 31 (345)
.-+|+.|++.|. ...+-..|.+-|.
T Consensus 13 ~~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 13 ATTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CcCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 468999999998 4566777777664
No 99
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=80.46 E-value=0.63 Score=27.89 Aligned_cols=29 Identities=24% Similarity=0.661 Sum_probs=20.0
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSR 43 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 43 (345)
|+|..|+..|.-...+ .. ...-.|+.||.
T Consensus 6 y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~ 34 (52)
T TIGR02605 6 YRCTACGHRFEVLQKM------SD-DPLATCPECGG 34 (52)
T ss_pred EEeCCCCCEeEEEEec------CC-CCCCCCCCCCC
Confidence 8999999999743211 11 34577999986
No 100
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=80.39 E-value=1.7 Score=33.31 Aligned_cols=35 Identities=17% Similarity=0.505 Sum_probs=28.5
Q ss_pred hCCCCCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhc
Q psy8793 291 HMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVL 334 (345)
Q Consensus 291 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 334 (345)
..+..-|.|+.|+..|+..-.+. ..|.|+.||...
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML 138 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence 34566799999999999888874 369999999863
No 101
>PHA00626 hypothetical protein
Probab=80.23 E-value=0.54 Score=28.11 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=6.9
Q ss_pred CcCCCCCccccC
Q psy8793 296 PYQCPQCPMAYK 307 (345)
Q Consensus 296 ~~~C~~C~~~f~ 307 (345)
.|.|+.||+.|+
T Consensus 23 rYkCkdCGY~ft 34 (59)
T PHA00626 23 DYVCCDCGYNDS 34 (59)
T ss_pred ceEcCCCCCeec
Confidence 455666665554
No 102
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=79.26 E-value=1.1 Score=34.24 Aligned_cols=24 Identities=38% Similarity=0.935 Sum_probs=20.1
Q ss_pred CcCCCCCccccCChHHHHHHhhhhcCCCccccccchh
Q psy8793 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNK 332 (345)
Q Consensus 296 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 332 (345)
.|.|++||..+ -|+.|-+||+||-
T Consensus 134 ~~vC~vCGy~~-------------~ge~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTH-------------EGEAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence 69999999775 3578899999993
No 103
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.99 E-value=0.92 Score=32.02 Aligned_cols=29 Identities=24% Similarity=0.834 Sum_probs=15.3
Q ss_pred ecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCCh
Q psy8793 270 KCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTN 309 (345)
Q Consensus 270 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 309 (345)
.|+.||..|-. .+..|..||.||..|...
T Consensus 11 ~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence 56666665532 123455566666655443
No 104
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=78.20 E-value=1.7 Score=26.49 Aligned_cols=10 Identities=40% Similarity=1.055 Sum_probs=5.9
Q ss_pred Cccccccchh
Q psy8793 323 KPYVCEICNK 332 (345)
Q Consensus 323 ~~~~C~~C~~ 332 (345)
.+|.|+.||.
T Consensus 49 ~~Y~Cp~CGF 58 (61)
T COG2888 49 NPYRCPKCGF 58 (61)
T ss_pred CceECCCcCc
Confidence 4566666654
No 105
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=77.67 E-value=1 Score=29.89 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=16.3
Q ss_pred CCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhccc
Q psy8793 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTH 336 (345)
Q Consensus 295 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 336 (345)
..|.||.|++.- +.++-+ ..+.|..|++.|.-
T Consensus 34 ~~~~Cp~C~~~~--------VkR~a~--GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRTT--------VKRIAT--GIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCcc--------eeeecc--CeEEcCCCCCeecc
Confidence 345666666541 122223 23666666666653
No 106
>KOG0717|consensus
Probab=77.46 E-value=1.6 Score=38.78 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.0
Q ss_pred ccccccccccCCHHHHHHHHhh
Q psy8793 152 HTCELCSKGFLSAESYKCHLRR 173 (345)
Q Consensus 152 ~~C~~C~~~f~~~~~l~~H~~~ 173 (345)
..|..|+..|.++..|-.|++.
T Consensus 461 ~~C~tCr~~FdSRnkLF~Hlk~ 482 (508)
T KOG0717|consen 461 ISCTTCRESFDSRNKLFAHLKK 482 (508)
T ss_pred HhhhhhhhhccchhHHHHHhhh
Confidence 6788888888888888888863
No 107
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=77.44 E-value=0.96 Score=26.55 Aligned_cols=31 Identities=16% Similarity=0.693 Sum_probs=22.2
Q ss_pred CCCCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcc
Q psy8793 4 GIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRK 44 (345)
Q Consensus 4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 44 (345)
....|+|..|++.|.. -.......|+.||..
T Consensus 3 ~~~~Y~C~~Cg~~~~~----------~~~~~~irCp~Cg~r 33 (49)
T COG1996 3 AMMEYKCARCGREVEL----------DQETRGIRCPYCGSR 33 (49)
T ss_pred ceEEEEhhhcCCeeeh----------hhccCceeCCCCCcE
Confidence 3457999999999931 123456899999864
No 108
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=76.81 E-value=1.8 Score=26.42 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=6.1
Q ss_pred Cccccccchh
Q psy8793 323 KPYVCEICNK 332 (345)
Q Consensus 323 ~~~~C~~C~~ 332 (345)
.+|.|+.||.
T Consensus 47 ~~Y~CP~CGF 56 (59)
T PRK14890 47 NPYTCPKCGF 56 (59)
T ss_pred CceECCCCCC
Confidence 4566666664
No 109
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=76.81 E-value=0.82 Score=26.00 Aligned_cols=29 Identities=28% Similarity=0.824 Sum_probs=20.5
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSR 43 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 43 (345)
|+|..|+..|..... ... ..+-.|+.||.
T Consensus 6 y~C~~Cg~~fe~~~~------~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQS------ISE-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEE------cCC-CCCCcCCCCCC
Confidence 889999999975322 222 45688999987
No 110
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=76.64 E-value=1.5 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.626 Sum_probs=27.8
Q ss_pred CCccCCC--CCCCCCCCchhHHHHhhhcCCCCccCCc----CCcccc
Q psy8793 6 KQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNI----CSRKFT 46 (345)
Q Consensus 6 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~ 46 (345)
.+..|+. |...+. +..|..|+...-..++..|++ |+..+.
T Consensus 8 ~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~ 53 (60)
T PF02176_consen 8 RPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVP 53 (60)
T ss_dssp SEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEE
T ss_pred CEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccc
Confidence 4568888 666565 579999999887788899999 988775
No 111
>PF14353 CpXC: CpXC protein
Probab=75.76 E-value=0.42 Score=35.16 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=32.8
Q ss_pred ccCCCCCCCCCCCchhHHH------Hh--hhc-CCCCccCCcCCccccchhhhcccccccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEH------FR--IHT-GEKPFTCNICSRKFTTYSQVRRSSNTSA 59 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H------~~--~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~~~ 59 (345)
.+|+.|+..|........- ++ .-. .-..|.||.||..|.-...+..|-..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~~ 62 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEKK 62 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCCC
Confidence 4799999999642111111 11 011 1233899999999998888888876643
No 112
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=75.75 E-value=2.2 Score=33.40 Aligned_cols=35 Identities=17% Similarity=0.605 Sum_probs=27.5
Q ss_pred CCCCCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhcc
Q psy8793 292 MDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLT 335 (345)
Q Consensus 292 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 335 (345)
.+..-|.|+.|+..|+..-.+. ..|.|+.||....
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE 147 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence 3455689999999998887763 3699999998643
No 113
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=74.74 E-value=1.7 Score=25.78 Aligned_cols=38 Identities=13% Similarity=0.493 Sum_probs=21.6
Q ss_pred CccCCCCCCCCCCCchhHHH-Hh----hhcCCCCccCCcCCcc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEH-FR----IHTGEKPFTCNICSRK 44 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H-~~----~h~~~~~~~C~~C~~~ 44 (345)
.|.|..|+..|.....-..+ +. .-.-...|.|++|+..
T Consensus 1 ~y~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~~w~CP~C~a~ 43 (50)
T cd00730 1 KYECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCPVCGAG 43 (50)
T ss_pred CcCCCCCCeEECCCCCCcccCcCCCCCHhHCCCCCCCCCCCCc
Confidence 48999999999853221111 10 0011123899999853
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=74.72 E-value=1.8 Score=41.68 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=7.4
Q ss_pred CCccccccchhh
Q psy8793 322 AKPYVCEICNKV 333 (345)
Q Consensus 322 ~~~~~C~~C~~~ 333 (345)
..|..|+.||-.
T Consensus 473 ~~p~~Cp~Cgs~ 484 (730)
T COG1198 473 PIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCC
Confidence 356667777654
No 115
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=74.50 E-value=2.6 Score=31.85 Aligned_cols=39 Identities=23% Similarity=0.536 Sum_probs=26.9
Q ss_pred CCCCCcCCCCCccccCChHHHHHHhhhhcCCCccccccchhhc
Q psy8793 292 MDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVL 334 (345)
Q Consensus 292 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 334 (345)
.+..-|.||.|+..|+....+.. . . ....|.|+.||...
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~-~--d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQL-L--D-MDGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHh-c--C-CCCcEECCCCCCEE
Confidence 34556999999999986555432 1 1 12349999999864
No 116
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=74.07 E-value=1.1 Score=28.87 Aligned_cols=43 Identities=28% Similarity=0.537 Sum_probs=29.3
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCC--cCCccccchhhhc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN--ICSRKFTTYSQVR 52 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~ 52 (345)
+.|+.|+....-+.+-...-. ..++-+.|. .||.+|.....+.
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~--~~~~Y~qC~N~eCg~tF~t~es~s 46 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT--TKERYHQCQNVNCSATFITYESVQ 46 (72)
T ss_pred ccCCCCCCccEEEEChhcChh--hheeeeecCCCCCCCEEEEEEEEE
Confidence 689999998854333333322 455668999 8999998765553
No 117
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=73.66 E-value=1.5 Score=31.76 Aligned_cols=15 Identities=40% Similarity=0.855 Sum_probs=9.6
Q ss_pred eeecCcCccccCChH
Q psy8793 268 IFKCTKCDKVFQHIQ 282 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~ 282 (345)
|++|..||..|.+-+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 456777777776544
No 118
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=73.19 E-value=2.9 Score=34.09 Aligned_cols=72 Identities=25% Similarity=0.563 Sum_probs=36.3
Q ss_pred hcCCceeecCcCccccCChHHHHHHHHHh--CCCCCcCC-----------CCCccccCChHHHHHHhhhh----cCCCcc
Q psy8793 263 IHNNEIFKCTKCDKVFQHIQLLNRHQLVH--MDTRPYQC-----------PQCPMAYKTNISLSAHLMKH----TGAKPY 325 (345)
Q Consensus 263 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C-----------~~C~~~f~~~~~l~~H~~~h----~~~~~~ 325 (345)
.|+++.|+|.+|.. |.-+..--.|+.+- .....|+| ..|.-.|=. -|++.. ...+++
T Consensus 137 ~hGGrif~CsfC~~-flCEDDQFEHQAsCQvLe~E~~KC~SCNrlGq~sCLRCK~cfCd-----dHvrrKg~ky~k~k~~ 210 (314)
T PF06524_consen 137 DHGGRIFKCSFCDN-FLCEDDQFEHQASCQVLESETFKCQSCNRLGQYSCLRCKICFCD-----DHVRRKGFKYEKGKPI 210 (314)
T ss_pred cCCCeEEEeecCCC-eeeccchhhhhhhhhhhhcccccccccccccchhhhheeeeehh-----hhhhhcccccccCCCC
Confidence 46777788888774 33333333344331 22233444 444433332 343321 223678
Q ss_pred ccccchhhccccchh
Q psy8793 326 VCEICNKVLTHRSSL 340 (345)
Q Consensus 326 ~C~~C~~~f~~~~~l 340 (345)
.|+.|++....-.+|
T Consensus 211 PCPKCg~et~eTkdL 225 (314)
T PF06524_consen 211 PCPKCGYETQETKDL 225 (314)
T ss_pred CCCCCCCcccccccc
Confidence 888888865554444
No 119
>PRK04023 DNA polymerase II large subunit; Validated
Probab=73.10 E-value=4.1 Score=40.20 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=4.7
Q ss_pred cccCCCccc
Q psy8793 213 FPCDKCEKV 221 (345)
Q Consensus 213 ~~C~~C~~~ 221 (345)
..|+.||..
T Consensus 627 RfCpsCG~~ 635 (1121)
T PRK04023 627 RKCPSCGKE 635 (1121)
T ss_pred ccCCCCCCc
Confidence 445555554
No 120
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=72.58 E-value=1.4 Score=27.15 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=8.3
Q ss_pred HHHHHHHHHhCCCCCcCCCC
Q psy8793 282 QLLNRHQLVHMDTRPYQCPQ 301 (345)
Q Consensus 282 ~~l~~H~~~h~~~~~~~C~~ 301 (345)
..|..|+...-..++..|++
T Consensus 24 ~~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 24 KELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp CCHHHHHHTTSTTSEEE-SS
T ss_pred HHHHHHHHccCCCCcEECCC
Confidence 34445544333334444444
No 121
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=72.40 E-value=2 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.549 Sum_probs=20.1
Q ss_pred CccCCCCCCCCCCCchhHHH-Hh----hhcCCCCccCCcCCcc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEH-FR----IHTGEKPFTCNICSRK 44 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H-~~----~h~~~~~~~C~~C~~~ 44 (345)
.|+|.+|+..|.....-..+ +. ...-...|.|++|+..
T Consensus 1 ky~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEKGDPENGIPPGTPFEDLPDDWVCPVCGAP 43 (47)
T ss_dssp EEEETTTSBEEETTTBBGGGTB-TT--GGGS-TT-B-TTTSSB
T ss_pred CcCCCCCCEEEcCCcCCcccCcCCCCCHHHCCCCCcCcCCCCc
Confidence 37899999999754332222 11 1111123899999864
No 122
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=72.35 E-value=4.2 Score=23.31 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=12.3
Q ss_pred CCceeecCcCccccCC----hHHHHHHH
Q psy8793 265 NNEIFKCTKCDKVFQH----IQLLNRHQ 288 (345)
Q Consensus 265 ~~~~~~C~~C~~~f~~----~~~l~~H~ 288 (345)
+.....|..|++.+.. .+.|.+|+
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 3445667777776654 25666666
No 123
>PF15269 zf-C2H2_7: Zinc-finger
Probab=71.18 E-value=2.6 Score=23.83 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=17.9
Q ss_pred cCCCCCccccCChHHHHHHhhh
Q psy8793 297 YQCPQCPMAYKTNISLSAHLMK 318 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~~H~~~ 318 (345)
|+|-+|..+...++.|.+||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 6788888888888888888764
No 124
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=71.08 E-value=1.8 Score=22.47 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=10.5
Q ss_pred CCCCCccccCChHHHHHHhhhhcCCCccccccchhh
Q psy8793 298 QCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKV 333 (345)
Q Consensus 298 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 333 (345)
+|+.|+..+.+ .+.-.|.|+.|+..
T Consensus 4 ~Cp~C~se~~y-----------~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTY-----------EDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----E-----------E-SSSEEETTTTEE
T ss_pred CCCCCCCccee-----------ccCCEEeCCccccc
Confidence 47777766655 33455777777643
No 125
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=70.95 E-value=4.9 Score=33.70 Aligned_cols=11 Identities=18% Similarity=0.733 Sum_probs=6.5
Q ss_pred CccccCCCccc
Q psy8793 211 NRFPCDKCEKV 221 (345)
Q Consensus 211 ~~~~C~~C~~~ 221 (345)
..|.|+.|...
T Consensus 307 gGy~CP~Cktk 317 (421)
T COG5151 307 GGYECPVCKTK 317 (421)
T ss_pred CceeCCcccce
Confidence 34677776543
No 126
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=70.28 E-value=4.2 Score=29.89 Aligned_cols=26 Identities=31% Similarity=0.614 Sum_probs=15.3
Q ss_pred CceeecCcCccccCChHHHHHHHHHhCCC
Q psy8793 266 NEIFKCTKCDKVFQHIQLLNRHQLVHMDT 294 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 294 (345)
+.-..|-+||+.|.. |.+|++.|+|-
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~gl 95 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGL 95 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S
T ss_pred cCeeEEccCCcccch---HHHHHHHccCC
Confidence 344678888888876 57888888654
No 127
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=69.88 E-value=4.3 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchhhh
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQV 51 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 51 (345)
..|+.|++.|-.. +..|..|+.||..|.....+
T Consensus 10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~~~~~ 42 (129)
T TIGR02300 10 RICPNTGSKFYDL-----------NRRPAVSPYTGEQFPPEEAL 42 (129)
T ss_pred ccCCCcCcccccc-----------CCCCccCCCcCCccCcchhh
Confidence 4899999999642 33689999999998765443
No 128
>KOG2071|consensus
Probab=67.29 E-value=5 Score=37.09 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=17.9
Q ss_pred CceeecCcCccccCChHHHHHHHHHh
Q psy8793 266 NEIFKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
+.+-+|..||..|........||..|
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhh
Confidence 44567777777777777666666655
No 129
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=67.29 E-value=4.1 Score=24.10 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=11.4
Q ss_pred eecCcCccccCCh-----HHHHHHHH
Q psy8793 269 FKCTKCDKVFQHI-----QLLNRHQL 289 (345)
Q Consensus 269 ~~C~~C~~~f~~~-----~~l~~H~~ 289 (345)
-.|..|++.+... +.|.+|++
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence 4566666666433 35555554
No 130
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=66.55 E-value=3.2 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=17.0
Q ss_pred eecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCCh
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTN 309 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 309 (345)
..|+.||+.|-. .+..|-.|+.||..|...
T Consensus 10 r~Cp~cg~kFYD-----------Lnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYD-----------LNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccc-----------cCCCCccCCCcCCccCcc
Confidence 456666666633 223556666666666444
No 131
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=66.49 E-value=3.5 Score=26.34 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=17.5
Q ss_pred CCcCCCCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 1 WHQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 1 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
|...+..-.|.+|++.|.- -.+.+.|..||..|=
T Consensus 3 W~~d~~~~~C~~C~~~F~~------------~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 3 WVPDSEASNCMICGKKFSL------------FRRRHHCRNCGRVVC 36 (69)
T ss_dssp SSSGGG-SB-TTT--B-BS------------SS-EEE-TTT--EEE
T ss_pred cCCCCCCCcCcCcCCcCCC------------ceeeEccCCCCCEEC
Confidence 5666677799999999942 134578999988774
No 132
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=63.98 E-value=1.5 Score=35.18 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCccCCcCCccccchhhhccccccccccc
Q psy8793 34 KPFTCNICSRKFTTYSQVRRSSNTSARNV 62 (345)
Q Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~ 62 (345)
..|.|++|+|.|.-..-+++|+.+.|.+.
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred CEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence 44999999999999999999999988764
No 133
>KOG2071|consensus
Probab=63.69 E-value=5.5 Score=36.84 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCccCCcCCccccchhhhccccccccccccc
Q psy8793 33 EKPFTCNICSRKFTTYSQVRRSSNTSARNVLK 64 (345)
Q Consensus 33 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~ 64 (345)
..+-.|..||.+|.+......||..|-....+
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~dwh~r 447 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHDDWHRR 447 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhhhhhhh
Confidence 34567888888888877777777666554433
No 134
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=62.41 E-value=2.5 Score=25.14 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=12.0
Q ss_pred CceeecCcCccccCChHHHHHHHHHh
Q psy8793 266 NEIFKCTKCDKVFQHIQLLNRHQLVH 291 (345)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~l~~H~~~h 291 (345)
...|+|+.|+..|--.=++-.|..+|
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~LH 44 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHETLH 44 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTTS-
T ss_pred CCeEECCCCCCccccCcChhhhcccc
Confidence 45678888887776665555554443
No 135
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=60.08 E-value=6.8 Score=18.88 Aligned_cols=10 Identities=20% Similarity=0.830 Sum_probs=6.1
Q ss_pred CCCCCCCCCC
Q psy8793 10 CSQCPKAFNQ 19 (345)
Q Consensus 10 C~~C~~~f~~ 19 (345)
|+.|+.....
T Consensus 2 Cp~CG~~~~~ 11 (23)
T PF13240_consen 2 CPNCGAEIED 11 (23)
T ss_pred CcccCCCCCC
Confidence 6667666543
No 136
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=59.72 E-value=8.5 Score=22.29 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=7.4
Q ss_pred CCccccccchh
Q psy8793 322 AKPYVCEICNK 332 (345)
Q Consensus 322 ~~~~~C~~C~~ 332 (345)
...|.|..|++
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 45577777764
No 137
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=59.70 E-value=3.8 Score=37.07 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=31.3
Q ss_pred ccCCcCCccccchhhhccccccccccccccccCCCCCCCchhH
Q psy8793 36 FTCNICSRKFTTYSQVRRSSNTSARNVLKLSTRKGTSRSISES 78 (345)
Q Consensus 36 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~ 78 (345)
+.|+.|.++|.+...+..|+...|...............+...
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH~~~l~P~lqs~lPqrId~~ 100 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEHPAGLKPKLQSVLPQRIDDD 100 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhhhhhcChhhhhhcCcccCHH
Confidence 6899999999999999999998887755544433333344333
No 138
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=59.42 E-value=9.6 Score=30.72 Aligned_cols=26 Identities=19% Similarity=0.680 Sum_probs=19.6
Q ss_pred CCceeecCcCccccCChHHHHHHHHH
Q psy8793 265 NNEIFKCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 265 ~~~~~~C~~C~~~f~~~~~l~~H~~~ 290 (345)
++..|.|+.|+|.|.-..-+..|+..
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~n 99 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFN 99 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhh
Confidence 45568899999999888888888875
No 139
>KOG2593|consensus
Probab=59.42 E-value=7.5 Score=34.46 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=5.6
Q ss_pred CccCccccccC
Q psy8793 240 PVSCDICHKEF 250 (345)
Q Consensus 240 ~~~C~~C~~~f 250 (345)
.|.|+.|++.|
T Consensus 128 ~Y~Cp~C~kky 138 (436)
T KOG2593|consen 128 GYVCPNCQKKY 138 (436)
T ss_pred cccCCccccch
Confidence 45555555554
No 140
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=59.39 E-value=5.8 Score=27.19 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=7.9
Q ss_pred eeecCcCccccCC
Q psy8793 268 IFKCTKCDKVFQH 280 (345)
Q Consensus 268 ~~~C~~C~~~f~~ 280 (345)
|++|..||..|.+
T Consensus 2 pH~CtrCG~vf~~ 14 (112)
T COG3364 2 PHQCTRCGEVFDD 14 (112)
T ss_pred Cceeccccccccc
Confidence 3566666666655
No 141
>KOG4124|consensus
Probab=58.87 E-value=4 Score=34.83 Aligned_cols=53 Identities=28% Similarity=0.701 Sum_probs=40.2
Q ss_pred CCCccCCC--CCCCCCCCchhHHHH-hhhc------------------CCCCccCCcCCccccchhhhcccccc
Q psy8793 5 IKQYQCSQ--CPKAFNQKGNLKEHF-RIHT------------------GEKPFTCNICSRKFTTYSQVRRSSNT 57 (345)
Q Consensus 5 ~~~~~C~~--C~~~f~~~~~l~~H~-~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~ 57 (345)
.++|+|++ |++.+.....|..|- -.|. ..++|+|++|.+++.....|..|...
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~~ 420 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRTH 420 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceeeh
Confidence 57888864 899999988888884 3443 12669999999999887777766644
No 142
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.35 E-value=5.7 Score=36.95 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=4.9
Q ss_pred cCcccccc
Q psy8793 242 SCDICHKE 249 (345)
Q Consensus 242 ~C~~C~~~ 249 (345)
.|..|+..
T Consensus 215 ~C~~Cg~~ 222 (505)
T TIGR00595 215 LCRSCGYI 222 (505)
T ss_pred EhhhCcCc
Confidence 46666655
No 143
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=57.93 E-value=4.9 Score=23.86 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=7.0
Q ss_pred ccccccchhhc
Q psy8793 324 PYVCEICNKVL 334 (345)
Q Consensus 324 ~~~C~~C~~~f 334 (345)
-+.|+.|++.+
T Consensus 37 r~~C~~Cgyt~ 47 (50)
T PRK00432 37 RWHCGKCGYTE 47 (50)
T ss_pred cEECCCcCCEE
Confidence 46677777654
No 144
>KOG4167|consensus
Probab=57.11 E-value=3.3 Score=39.11 Aligned_cols=26 Identities=42% Similarity=0.751 Sum_probs=23.8
Q ss_pred eeecCcCccccCChHHHHHHHHHhCC
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLVHMD 293 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 293 (345)
.|.|.+|++.|.....+..||+.|..
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 49999999999999999999999953
No 145
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=56.54 E-value=5.2 Score=26.80 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=6.8
Q ss_pred CccCccccccCCC
Q psy8793 240 PVSCDICHKEFTH 252 (345)
Q Consensus 240 ~~~C~~C~~~f~~ 252 (345)
|-.|..||+.|.+
T Consensus 58 Pa~CkkCGfef~~ 70 (97)
T COG3357 58 PARCKKCGFEFRD 70 (97)
T ss_pred ChhhcccCccccc
Confidence 4455555555543
No 146
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=56.11 E-value=5.5 Score=19.49 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=7.0
Q ss_pred CCccCCCCCC
Q psy8793 6 KQYQCSQCPK 15 (345)
Q Consensus 6 ~~~~C~~C~~ 15 (345)
-+|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 3578888874
No 147
>PRK04023 DNA polymerase II large subunit; Validated
Probab=55.52 E-value=11 Score=37.39 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=6.8
Q ss_pred ccccccchhh
Q psy8793 324 PYVCEICNKV 333 (345)
Q Consensus 324 ~~~C~~C~~~ 333 (345)
++.|+.|+..
T Consensus 663 ~y~CPKCG~E 672 (1121)
T PRK04023 663 EDECEKCGRE 672 (1121)
T ss_pred CCcCCCCCCC
Confidence 3668888764
No 148
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=54.63 E-value=5.5 Score=29.27 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=16.8
Q ss_pred CcCCCCCccccCChHHHHHHhhhhcCCCc
Q psy8793 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKP 324 (345)
Q Consensus 296 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 324 (345)
...|-+||+.|.. |.+|+..|+|..|
T Consensus 72 ~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 72 YIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp -EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred eeEEccCCcccch---HHHHHHHccCCCH
Confidence 3689999999965 5899999988765
No 150
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=54.53 E-value=9 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.642 Sum_probs=7.5
Q ss_pred ceeecCcCccccCCh
Q psy8793 267 EIFKCTKCDKVFQHI 281 (345)
Q Consensus 267 ~~~~C~~C~~~f~~~ 281 (345)
+.+.|..||..|.-.
T Consensus 3 k~l~C~dCg~~FvfT 17 (49)
T PF13451_consen 3 KTLTCKDCGAEFVFT 17 (49)
T ss_pred eeEEcccCCCeEEEe
Confidence 345555555555433
No 151
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=54.16 E-value=17 Score=31.25 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=0.0
Q ss_pred cCcCccccCChHHHHHHHHHh-----------------------------------------------------------
Q psy8793 271 CTKCDKVFQHIQLLNRHQLVH----------------------------------------------------------- 291 (345)
Q Consensus 271 C~~C~~~f~~~~~l~~H~~~h----------------------------------------------------------- 291 (345)
|+.|++.|...+.+..|+...
T Consensus 241 C~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER~aei~~l~r~~ 320 (470)
T COG5188 241 CVKCGREFSRSKVFEYHLEGKRHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKAEISLLSRRK 320 (470)
T ss_pred eHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q ss_pred ------------------------CCCCCcCCCCCccccCChHHHHHHhhhhcCCCccccccch-hhccccchhhhcc
Q psy8793 292 ------------------------MDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICN-KVLTHRSSLISHY 344 (345)
Q Consensus 292 ------------------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~ 344 (345)
..-++|.-|+-.-+.-...=| .+.|.=.+.|.|.+|| +.+..+..+.+|.
T Consensus 321 ~~~at~S~e~EGaeq~d~eQ~DE~~~~k~fdmPLG~DG~PmP~WL---~klhgLd~ef~CEICgNyvy~GR~~FdrHF 395 (470)
T COG5188 321 KQPATKSSEKEGAEQVDGEQRDEHVSGKSFDMPLGPDGLPMPRWL---CKLHGLDIEFECEICGNYVYYGRDRFDRHF 395 (470)
T ss_pred hccCCCchhhcccccccccccchhhccCcccCCCCCCCCCCchHH---HHhcCCCcceeeeecccccccchHHHHhhh
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=54.04 E-value=7.6 Score=37.39 Aligned_cols=9 Identities=22% Similarity=0.815 Sum_probs=5.1
Q ss_pred ccccccchh
Q psy8793 324 PYVCEICNK 332 (345)
Q Consensus 324 ~~~C~~C~~ 332 (345)
|+.|+.|+-
T Consensus 422 p~~Cp~Cgs 430 (665)
T PRK14873 422 DWRCPRCGS 430 (665)
T ss_pred CccCCCCcC
Confidence 455666654
No 153
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.82 E-value=5.4 Score=27.72 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=6.6
Q ss_pred CCcCCCCCcccc
Q psy8793 295 RPYQCPQCPMAY 306 (345)
Q Consensus 295 ~~~~C~~C~~~f 306 (345)
.|..||+||+.|
T Consensus 25 dPiVsPytG~s~ 36 (129)
T COG4530 25 DPIVSPYTGKSY 36 (129)
T ss_pred CccccCcccccc
Confidence 455555555555
No 154
>KOG2593|consensus
Probab=53.68 E-value=14 Score=32.89 Aligned_cols=13 Identities=23% Similarity=0.772 Sum_probs=6.2
Q ss_pred eeecCcCccccCC
Q psy8793 268 IFKCTKCDKVFQH 280 (345)
Q Consensus 268 ~~~C~~C~~~f~~ 280 (345)
-|.|+.|.+.|.+
T Consensus 128 ~Y~Cp~C~kkyt~ 140 (436)
T KOG2593|consen 128 GYVCPNCQKKYTS 140 (436)
T ss_pred cccCCccccchhh
Confidence 3455555554443
No 155
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=53.20 E-value=4 Score=27.93 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=24.2
Q ss_pred CCCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccc
Q psy8793 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (345)
++.|.|+.|+..-...-.+ +.-....-..|..||.+|.-
T Consensus 20 ~k~FtCp~Cghe~vs~ctv----kk~~~~g~~~Cg~CGls~e~ 58 (104)
T COG4888 20 PKTFTCPRCGHEKVSSCTV----KKTVNIGTAVCGNCGLSFEC 58 (104)
T ss_pred CceEecCccCCeeeeEEEE----EecCceeEEEcccCcceEEE
Confidence 4668999998776543332 22222333679999988853
No 156
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=52.36 E-value=6.2 Score=29.42 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=25.3
Q ss_pred cCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchhhhc
Q psy8793 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVR 52 (345)
Q Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 52 (345)
+||.|+..-...-+-+.=-.-....+.-.|+.|+..|++.....
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~E 45 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERAE 45 (156)
T ss_pred CCCCCCCCCCeeeecccccccchhhhhhcccccccccchhheee
Confidence 69999877654322111111111123467999999998865443
No 157
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=51.74 E-value=8.4 Score=28.02 Aligned_cols=25 Identities=28% Similarity=0.483 Sum_probs=20.2
Q ss_pred ceeecCcCccccCChHHHHHHHHHhCCC
Q psy8793 267 EIFKCTKCDKVFQHIQLLNRHQLVHMDT 294 (345)
Q Consensus 267 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 294 (345)
.-..|-++|+.|++ |++|+.+|.+-
T Consensus 75 D~IicLEDGkkfKS---LKRHL~t~~gm 99 (148)
T COG4957 75 DYIICLEDGKKFKS---LKRHLTTHYGL 99 (148)
T ss_pred CeEEEeccCcchHH---HHHHHhcccCC
Confidence 34789999999965 99999998763
No 158
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=51.57 E-value=6.5 Score=29.15 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCccCCCCCCCCCCC---chhH------HHHhhhcCCCCccCCcCCcc
Q psy8793 5 IKQYQCSQCPKAFNQK---GNLK------EHFRIHTGEKPFTCNICSRK 44 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~---~~l~------~H~~~h~~~~~~~C~~C~~~ 44 (345)
+..+.|..|+..|... ..|. .|+--......+.||.||..
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~ 116 (135)
T PRK03824 68 EAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSR 116 (135)
T ss_pred ceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCC
Confidence 3568999999888753 1111 12211122344779999854
No 159
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=49.66 E-value=2.2 Score=28.37 Aligned_cols=40 Identities=20% Similarity=0.474 Sum_probs=16.0
Q ss_pred CCCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccch
Q psy8793 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTY 48 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 48 (345)
++.|.|+.|+..=.=.-. |..-.+.....|..|+..|...
T Consensus 20 ~~~F~CPfC~~~~sV~v~----idkk~~~~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 20 PKVFDCPFCNHEKSVSVK----IDKKEGIGILSCRVCGESFQTK 59 (81)
T ss_dssp SS----TTT--SS-EEEE----EETTTTEEEEEESSS--EEEEE
T ss_pred CceEcCCcCCCCCeEEEE----EEccCCEEEEEecCCCCeEEEc
Confidence 466999999844221111 1111233347899999888653
No 160
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=49.03 E-value=25 Score=27.32 Aligned_cols=42 Identities=14% Similarity=0.473 Sum_probs=23.5
Q ss_pred HHHHhhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCcccc
Q psy8793 256 VLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAY 306 (345)
Q Consensus 256 l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 306 (345)
|..-+.......-|.|+.|...|+...+.. ..|.||.||...
T Consensus 101 Lk~~le~~~~~~~y~C~~~~~r~sfdeA~~---------~~F~Cp~Cg~~L 142 (176)
T COG1675 101 LKRKLEKETENNYYVCPNCHVKYSFDEAME---------LGFTCPKCGEDL 142 (176)
T ss_pred HHHHHHhhccCCceeCCCCCCcccHHHHHH---------hCCCCCCCCchh
Confidence 333344445556677777776665544433 127777777543
No 161
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=48.91 E-value=8.8 Score=23.20 Aligned_cols=32 Identities=22% Similarity=0.641 Sum_probs=21.7
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
.|+|+.|+..+.-.... .++ ...|+.||..+.
T Consensus 2 ~~~CP~CG~~iev~~~~-------~Ge-iV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEIELENPE-------LGE-LVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEEecCCCc-------cCC-EEeCCCCCCEEE
Confidence 47999999988532221 122 478999998763
No 162
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=48.38 E-value=14 Score=22.31 Aligned_cols=27 Identities=22% Similarity=0.689 Sum_probs=19.2
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
-+|++|++.|... +..-.|+.|+..+-
T Consensus 6 ~~C~~Cg~~~~~~------------dDiVvCp~CgapyH 32 (54)
T PF14446_consen 6 CKCPVCGKKFKDG------------DDIVVCPECGAPYH 32 (54)
T ss_pred ccChhhCCcccCC------------CCEEECCCCCCccc
Confidence 4788999988643 33467888887653
No 163
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=48.34 E-value=8.2 Score=23.45 Aligned_cols=37 Identities=16% Similarity=0.475 Sum_probs=23.8
Q ss_pred ccCCCCCCCCC-CCchhHHH-HhhhcCCCCccCCcCCccc
Q psy8793 8 YQCSQCPKAFN-QKGNLKEH-FRIHTGEKPFTCNICSRKF 45 (345)
Q Consensus 8 ~~C~~C~~~f~-~~~~l~~H-~~~h~~~~~~~C~~C~~~f 45 (345)
.+|.+|++.+. ....+..= |+. .....|.|..|..+-
T Consensus 3 vkC~lCdk~~~Id~~~~~aKrLrn-rPi~tYmC~eC~~RI 41 (56)
T PF09963_consen 3 VKCILCDKKEEIDEDTPEAKRLRN-RPIHTYMCDECKERI 41 (56)
T ss_pred eEEEecCCEEEeccCCHHHHHhhc-CCCcceeChhHHHHH
Confidence 47999999987 33333332 333 345569999997643
No 164
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=48.28 E-value=8 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=24.4
Q ss_pred cCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchhhhc
Q psy8793 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVR 52 (345)
Q Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 52 (345)
+||.|+..=...-+=+.--.--...+.-.|..|++.|++...+.
T Consensus 2 ~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErve 45 (147)
T TIGR00244 2 HCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERAE 45 (147)
T ss_pred CCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeecc
Confidence 68999876543211111100011123367999999999866554
No 165
>PF12773 DZR: Double zinc ribbon
Probab=47.90 E-value=16 Score=21.38 Aligned_cols=7 Identities=43% Similarity=1.288 Sum_probs=3.1
Q ss_pred CCCCCcc
Q psy8793 298 QCPQCPM 304 (345)
Q Consensus 298 ~C~~C~~ 304 (345)
.|+.|+.
T Consensus 31 ~C~~Cg~ 37 (50)
T PF12773_consen 31 ICPNCGA 37 (50)
T ss_pred CCcCCcC
Confidence 3444443
No 166
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=47.82 E-value=6.5 Score=21.47 Aligned_cols=31 Identities=13% Similarity=0.524 Sum_probs=17.6
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
..|+.|+..|. +..-.....-.|..||-.+.
T Consensus 2 r~C~~Cg~~Yh--------~~~~pP~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 2 RICPKCGRIYH--------IEFNPPKVEGVCDNCGGELV 32 (36)
T ss_dssp EEETTTTEEEE--------TTTB--SSTTBCTTTTEBEB
T ss_pred cCcCCCCCccc--------cccCCCCCCCccCCCCCeeE
Confidence 35778888874 22222334467888876543
No 167
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=47.52 E-value=10 Score=25.71 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=20.6
Q ss_pred CCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccc
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (345)
..|.|++|++.--.+ .....|.|.-|++.|.-
T Consensus 35 a~y~CpfCgk~~vkR----------~a~GIW~C~~C~~~~AG 66 (90)
T PTZ00255 35 AKYFCPFCGKHAVKR----------QAVGIWRCKGCKKTVAG 66 (90)
T ss_pred CCccCCCCCCCceee----------eeeEEEEcCCCCCEEeC
Confidence 468888887543211 12245889999888864
No 168
>KOG4167|consensus
Probab=47.18 E-value=2.8 Score=39.52 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=21.3
Q ss_pred CCCCccCCcCCccccchhhhccccccccc
Q psy8793 32 GEKPFTCNICSRKFTTYSQVRRSSNTSAR 60 (345)
Q Consensus 32 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ 60 (345)
.+..|.|++|++.|..-.++..||++|.-
T Consensus 789 ~~giFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 789 PTGIFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred CCceeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 44567888888888877777778877654
No 169
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=47.04 E-value=9.9 Score=22.27 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=5.5
Q ss_pred cccccchhh
Q psy8793 325 YVCEICNKV 333 (345)
Q Consensus 325 ~~C~~C~~~ 333 (345)
+.|+.|+++
T Consensus 38 ~~CGkCgyT 46 (51)
T COG1998 38 WACGKCGYT 46 (51)
T ss_pred eEeccccce
Confidence 566666664
No 170
>KOG1280|consensus
Probab=46.33 E-value=17 Score=31.22 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=27.8
Q ss_pred CCCccCCCCCCCCCCCchhHHHHh-hhcCCCC-ccCCcCCc
Q psy8793 5 IKQYQCSQCPKAFNQKGNLKEHFR-IHTGEKP-FTCNICSR 43 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~-~~C~~C~~ 43 (345)
+..|+|+.|+..-.+...|..|+. .|....+ ..|++|+-
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~ 117 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAA 117 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccCcceeeecccc
Confidence 456999999999999999999965 5654322 35666643
No 171
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.13 E-value=9.2 Score=32.78 Aligned_cols=74 Identities=19% Similarity=0.392 Sum_probs=35.1
Q ss_pred ccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCChHHHHHH-hhh-
Q psy8793 241 VSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAH-LMK- 318 (345)
Q Consensus 241 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~- 318 (345)
-.|++||..=. .+ + .+.....+.+-..|..|+-.+.. ..-+|+.||.. ..|... +-.
T Consensus 188 ~~CPvCGs~P~-~s-~-v~~~~~~G~RyL~CslC~teW~~--------------~R~~C~~Cg~~----~~l~y~~~~~~ 246 (309)
T PRK03564 188 QFCPVCGSMPV-SS-V-VQIGTTQGLRYLHCNLCESEWHV--------------VRVKCSNCEQS----GKLHYWSLDSE 246 (309)
T ss_pred CCCCCCCCcch-hh-e-eeccCCCCceEEEcCCCCCcccc--------------cCccCCCCCCC----CceeeeeecCC
Confidence 45777774411 11 1 11222344556677777755421 33468888752 122111 111
Q ss_pred hcCCCccccccchhhcc
Q psy8793 319 HTGAKPYVCEICNKVLT 335 (345)
Q Consensus 319 h~~~~~~~C~~C~~~f~ 335 (345)
..+.+-..|..|+--..
T Consensus 247 ~~~~r~e~C~~C~~YlK 263 (309)
T PRK03564 247 QAAVKAESCGDCGTYLK 263 (309)
T ss_pred CcceEeeecccccccce
Confidence 12335577777776443
No 172
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=45.89 E-value=9.2 Score=25.92 Aligned_cols=32 Identities=28% Similarity=0.641 Sum_probs=20.4
Q ss_pred CCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccc
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (345)
..|.|++|++.--.+ .....|.|.-|++.|.-
T Consensus 34 a~y~CpfCgk~~vkR----------~a~GIW~C~~C~~~~AG 65 (91)
T TIGR00280 34 AKYVCPFCGKKTVKR----------GSTGIWTCRKCGAKFAG 65 (91)
T ss_pred cCccCCCCCCCceEE----------EeeEEEEcCCCCCEEeC
Confidence 358888887543211 12345889999888854
No 173
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=45.80 E-value=8.8 Score=19.56 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=9.3
Q ss_pred cccccchhhccccchhhhc
Q psy8793 325 YVCEICNKVLTHRSSLISH 343 (345)
Q Consensus 325 ~~C~~C~~~f~~~~~l~~H 343 (345)
|.|-.|++.| ...+.+.|
T Consensus 1 ~sCiDC~~~F-~~~~y~~H 18 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSH 18 (28)
T ss_dssp EEETTTTEEE-EGGGTTT-
T ss_pred CeeecCCCCc-CcCCcCCC
Confidence 4566666666 34444444
No 174
>PRK05580 primosome assembly protein PriA; Validated
Probab=45.54 E-value=12 Score=36.45 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.4
Q ss_pred cCcccccc
Q psy8793 242 SCDICHKE 249 (345)
Q Consensus 242 ~C~~C~~~ 249 (345)
.|..|+..
T Consensus 383 ~C~~Cg~~ 390 (679)
T PRK05580 383 LCRDCGWV 390 (679)
T ss_pred EhhhCcCc
Confidence 45555554
No 175
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.26 E-value=5.8 Score=31.81 Aligned_cols=41 Identities=27% Similarity=0.593 Sum_probs=25.0
Q ss_pred CCCccCCCCCCCCCCCchhHHHHhhhcCC----------CC-----ccCCcCCccc
Q psy8793 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGE----------KP-----FTCNICSRKF 45 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----------~~-----~~C~~C~~~f 45 (345)
++.+.||+|+-.|....-+..-.++-.++ .| ..||.|.+..
T Consensus 17 kk~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~yAa 72 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICYYAA 72 (267)
T ss_pred hceeccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhhHHH
Confidence 45689999999998653333333322222 11 3699998753
No 176
>KOG3408|consensus
Probab=45.18 E-value=11 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=17.2
Q ss_pred CCcCCCCCccccCChHHHHHHhhh
Q psy8793 295 RPYQCPQCPMAYKTNISLSAHLMK 318 (345)
Q Consensus 295 ~~~~C~~C~~~f~~~~~l~~H~~~ 318 (345)
..|.|-.|.+-|.+...|+.|.++
T Consensus 56 GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 56 GQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred ceeehhhhhhhhcchHHHHHHHhc
Confidence 347777777777777777777663
No 177
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=45.08 E-value=3.2 Score=28.02 Aligned_cols=10 Identities=60% Similarity=1.388 Sum_probs=4.8
Q ss_pred eecCcCcccc
Q psy8793 269 FKCTKCDKVF 278 (345)
Q Consensus 269 ~~C~~C~~~f 278 (345)
|.|..|++.|
T Consensus 54 W~C~~C~~~~ 63 (90)
T PF01780_consen 54 WKCKKCGKKF 63 (90)
T ss_dssp EEETTTTEEE
T ss_pred eecCCCCCEE
Confidence 4444444444
No 178
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=44.61 E-value=10 Score=21.32 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=23.8
Q ss_pred cCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchhhhc
Q psy8793 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVR 52 (345)
Q Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 52 (345)
+||.|+........ .+.....|+.|+-.+.+...|.
T Consensus 1 ~CP~C~~~l~~~~~--------~~~~id~C~~C~G~W~d~~el~ 36 (41)
T PF13453_consen 1 KCPRCGTELEPVRL--------GDVEIDVCPSCGGIWFDAGELE 36 (41)
T ss_pred CcCCCCcccceEEE--------CCEEEEECCCCCeEEccHHHHH
Confidence 58888876543211 2234478999998887777664
No 179
>KOG1940|consensus
Probab=44.60 E-value=15 Score=30.76 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=37.9
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCC-----------ccCCcCCccccchhhhcccccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKP-----------FTCNICSRKFTTYSQVRRSSNT 57 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~~~~l~~H~~~ 57 (345)
|.|++|.+ -.....+.+++..+....| ..|+.|+...+.+.....|+-.
T Consensus 197 y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~y~~~~~~i~cndC~~~~~~k~~~l~~kc~ 256 (276)
T KOG1940|consen 197 YTCPICSK-PGDMSHYFRKLDKELAGSPMPEEYKNKTQDILCNDCGSGTNVKYHILYHKCG 256 (276)
T ss_pred CCCCcccc-hHHHHHHHHHHHHHHhcCCCCchhhchhheeeccCCCCCCccceehhhhhCC
Confidence 99999999 7788888888877765533 4699999888777777777643
No 180
>KOG1280|consensus
Probab=44.27 E-value=29 Score=29.96 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCcccccccccccCCHHHHHHHHhhhcCCCCccccccccCc
Q psy8793 149 EKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTE 189 (345)
Q Consensus 149 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~ 189 (345)
...|.|++|+..=.+...|..|....+.+-...+-++.|+.
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~ 117 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAA 117 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccCcceeeecccc
Confidence 34799999999988899999999988877655554444543
No 181
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=43.86 E-value=8.4 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=18.2
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
|+|+.|+.... .......-+.|+.||....
T Consensus 1 m~Cp~Cg~~~~---------~~D~~~g~~vC~~CG~Vl~ 30 (43)
T PF08271_consen 1 MKCPNCGSKEI---------VFDPERGELVCPNCGLVLE 30 (43)
T ss_dssp ESBTTTSSSEE---------EEETTTTEEEETTT-BBEE
T ss_pred CCCcCCcCCce---------EEcCCCCeEECCCCCCEee
Confidence 57999988651 1112234489999998653
No 182
>KOG3214|consensus
Probab=43.82 E-value=6.8 Score=26.72 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccchh
Q psy8793 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 49 (345)
+..|.|++|+-.=.- .--|..-.......|.+|+.+|.+..
T Consensus 21 dt~FnClfcnHek~v----~~~~Dk~~~iG~~sC~iC~esFqt~i 61 (109)
T KOG3214|consen 21 DTQFNCLFCNHEKSV----SCTLDKKHNIGKASCRICEESFQTTI 61 (109)
T ss_pred heeeccCccccccce----eeeehhhcCcceeeeeehhhhhccch
Confidence 446999999865421 11233334445578999999997643
No 183
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.99 E-value=16 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=23.4
Q ss_pred ccCcccccc-CCChhHHHHHhhhhcCCceeecCcCccccCC
Q psy8793 241 VSCDICHKE-FTHPSSVLYHKQSIHNNEIFKCTKCDKVFQH 280 (345)
Q Consensus 241 ~~C~~C~~~-f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~ 280 (345)
.+|.+|++. +.....+..-+.....-+.|.|+.|......
T Consensus 3 vkCiiCd~v~~iD~rt~~tKrLrN~PIrtymC~eC~~Rva~ 43 (68)
T COG4896 3 VKCIICDRVDEIDNRTFKTKRLRNKPIRTYMCPECEHRVAI 43 (68)
T ss_pred ceEEEecceeeecchhHHHHHhhCCCceeEechhhHhhhch
Confidence 457777743 3344445554555555666888888765543
No 184
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=42.53 E-value=16 Score=26.60 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.4
Q ss_pred cCCCCCccccCChHHHHHHhhhhcCCCc
Q psy8793 297 YQCPQCPMAYKTNISLSAHLMKHTGAKP 324 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 324 (345)
..|.++|+.| .+|++|+.+|.|-.|
T Consensus 77 IicLEDGkkf---KSLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKF---KSLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcch---HHHHHHHhcccCCCH
Confidence 5799999999 579999999988654
No 185
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=42.19 E-value=16 Score=22.08 Aligned_cols=11 Identities=18% Similarity=1.026 Sum_probs=5.0
Q ss_pred ccCCCCCCCCC
Q psy8793 8 YQCSQCPKAFN 18 (345)
Q Consensus 8 ~~C~~C~~~f~ 18 (345)
++|+.|+.+|.
T Consensus 29 W~C~~Cgh~w~ 39 (55)
T PF14311_consen 29 WKCPKCGHEWK 39 (55)
T ss_pred EECCCCCCeeE
Confidence 34444444443
No 186
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=41.98 E-value=4.2 Score=22.21 Aligned_cols=7 Identities=43% Similarity=1.203 Sum_probs=2.9
Q ss_pred ccccccc
Q psy8793 324 PYVCEIC 330 (345)
Q Consensus 324 ~~~C~~C 330 (345)
-|.|..|
T Consensus 29 ryrC~~C 35 (36)
T PF03811_consen 29 RYRCKDC 35 (36)
T ss_pred eEecCcC
Confidence 3444433
No 187
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=41.92 E-value=26 Score=21.26 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.3
Q ss_pred CCCCccCCcCCccc
Q psy8793 32 GEKPFTCNICSRKF 45 (345)
Q Consensus 32 ~~~~~~C~~C~~~f 45 (345)
+...|.|+.||..+
T Consensus 11 ~~v~~~Cp~cGipt 24 (55)
T PF13824_consen 11 AHVNFECPDCGIPT 24 (55)
T ss_pred cccCCcCCCCCCcC
Confidence 34568899998865
No 188
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.33 E-value=9.7 Score=21.49 Aligned_cols=12 Identities=33% Similarity=1.066 Sum_probs=6.5
Q ss_pred ccccchhhcccc
Q psy8793 326 VCEICNKVLTHR 337 (345)
Q Consensus 326 ~C~~C~~~f~~~ 337 (345)
.|.+|+..|+.+
T Consensus 10 ~C~~C~rpf~WR 21 (42)
T PF10013_consen 10 ICPVCGRPFTWR 21 (42)
T ss_pred cCcccCCcchHH
Confidence 455555555543
No 189
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.98 E-value=19 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.622 Sum_probs=18.7
Q ss_pred cCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
.|+.|+..-.. -...+.|.|+.||..+.
T Consensus 30 ~C~~CG~~~~~----------~~~~r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 30 TCPRCGHRNKK----------RRSGRVFTCPNCGFEMD 57 (69)
T ss_pred CccCccccccc----------ccccceEEcCCCCCEEC
Confidence 57777776654 22345688999988753
No 190
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=40.96 E-value=14 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=18.7
Q ss_pred CCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCc
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSR 43 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 43 (345)
-.+.|..|+..|.... ..+.||.||.
T Consensus 69 ~~~~C~~Cg~~~~~~~------------~~~~CP~Cgs 94 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQ------------HDAQCPHCHG 94 (113)
T ss_pred cEEEcccCCCEEecCC------------cCccCcCCCC
Confidence 3578999998886431 3467999984
No 191
>KOG4377|consensus
Probab=40.86 E-value=19 Score=31.78 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=33.8
Q ss_pred eec--CcCccccCChHHHHHHHHHhCCCC------------CcCC--CCCccccCChHHHHHHhhhhcCCC-------cc
Q psy8793 269 FKC--TKCDKVFQHIQLLNRHQLVHMDTR------------PYQC--PQCPMAYKTNISLSAHLMKHTGAK-------PY 325 (345)
Q Consensus 269 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~------------~~~C--~~C~~~f~~~~~l~~H~~~h~~~~-------~~ 325 (345)
|.| +.|+..+.++..+.+|..+|.... .|.| ..|++ .-+....|...|+..+ -|
T Consensus 272 yhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrthf 348 (480)
T KOG4377|consen 272 YHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHF 348 (480)
T ss_pred hcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceeccee
Confidence 556 336666666666666666663211 1445 55665 3344556666554322 26
Q ss_pred ccccchhhcc
Q psy8793 326 VCEICNKVLT 335 (345)
Q Consensus 326 ~C~~C~~~f~ 335 (345)
.|..|+-+++
T Consensus 349 hC~r~gCTdt 358 (480)
T KOG4377|consen 349 HCQRIGCTDT 358 (480)
T ss_pred EEeccCCccc
Confidence 6666664333
No 192
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=39.95 E-value=7.3 Score=21.82 Aligned_cols=11 Identities=18% Similarity=1.017 Sum_probs=9.0
Q ss_pred ccCCcCCcccc
Q psy8793 36 FTCNICSRKFT 46 (345)
Q Consensus 36 ~~C~~C~~~f~ 46 (345)
|.|..|+..+.
T Consensus 29 y~C~~C~~~w~ 39 (40)
T smart00440 29 YVCTKCGHRWR 39 (40)
T ss_pred EEeCCCCCEeC
Confidence 88999998764
No 193
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=39.95 E-value=18 Score=19.32 Aligned_cols=24 Identities=13% Similarity=0.420 Sum_probs=17.4
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHT 31 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~ 31 (345)
.|.|+.|++.... ..+..||..-.
T Consensus 4 ~~~C~nC~R~v~a-~RfA~HLekCm 27 (33)
T PF08209_consen 4 YVECPNCGRPVAA-SRFAPHLEKCM 27 (33)
T ss_dssp EEE-TTTSSEEEG-GGHHHHHHHHT
T ss_pred eEECCCCcCCcch-hhhHHHHHHHH
Confidence 4789999998864 67888887544
No 194
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=39.89 E-value=29 Score=21.23 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=12.5
Q ss_pred ceeecCcCccccCChHHHHHHHHHhCCCCCcCCCC
Q psy8793 267 EIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301 (345)
Q Consensus 267 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~ 301 (345)
.|+....|+-.|.. +.+...+ ......+||.
T Consensus 23 ~PV~s~~C~H~fek-~aI~~~i---~~~~~~~CPv 53 (57)
T PF11789_consen 23 DPVKSKKCGHTFEK-EAILQYI---QRNGSKRCPV 53 (57)
T ss_dssp SEEEESSS--EEEH-HHHHHHC---TTTS-EE-SC
T ss_pred CCcCcCCCCCeecH-HHHHHHH---HhcCCCCCCC
Confidence 34555666666633 3333333 2234455555
No 195
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=39.47 E-value=11 Score=28.18 Aligned_cols=11 Identities=18% Similarity=0.972 Sum_probs=5.7
Q ss_pred eeecCcCccccC
Q psy8793 268 IFKCTKCDKVFQ 279 (345)
Q Consensus 268 ~~~C~~C~~~f~ 279 (345)
+|.|. |+..|.
T Consensus 117 ~Y~C~-C~q~~l 127 (156)
T COG3091 117 PYRCQ-CQQHYL 127 (156)
T ss_pred eEEee-cCCccc
Confidence 45555 555543
No 196
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=39.36 E-value=15 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.790 Sum_probs=14.3
Q ss_pred eeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccc
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMA 305 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 305 (345)
.+.|..||..|.-... .+.||.||..
T Consensus 70 ~~~C~~Cg~~~~~~~~------------~~~CP~Cgs~ 95 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEF------------DFSCPRCGSP 95 (113)
T ss_dssp EEEETTTS-EEECHHC------------CHH-SSSSSS
T ss_pred cEECCCCCCEEecCCC------------CCCCcCCcCC
Confidence 3677888877754331 1447777744
No 197
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=38.67 E-value=14 Score=27.10 Aligned_cols=36 Identities=22% Similarity=0.567 Sum_probs=22.6
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccch
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTY 48 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 48 (345)
-.|+.|+..... .+..... +...|.|+.|++.|+..
T Consensus 31 ~~cP~C~s~~~~--k~g~~~~---~~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 31 VNCPRCKSSNVV--KIGGIRR---GHQRYKCKSCGSTFTVE 66 (129)
T ss_pred CcCCCCCcccee--eECCccc---cccccccCCcCcceeee
Confidence 478888877621 1111111 24569999999999753
No 198
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=38.62 E-value=22 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=17.4
Q ss_pred CccCCcCCccccchhhhcccc
Q psy8793 35 PFTCNICSRKFTTYSQVRRSS 55 (345)
Q Consensus 35 ~~~C~~C~~~f~~~~~l~~H~ 55 (345)
-+.|-+||..|.+...|..+-
T Consensus 27 ~~YC~~Cg~~Y~d~~dL~~~C 47 (55)
T PF13821_consen 27 HNYCFWCGTKYDDEEDLERNC 47 (55)
T ss_pred CceeeeeCCccCCHHHHHhCC
Confidence 388999999999998886543
No 199
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=38.40 E-value=16 Score=26.18 Aligned_cols=26 Identities=15% Similarity=0.589 Sum_probs=18.7
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRK 44 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 44 (345)
.+.|..|+..|.... ..+.||.||..
T Consensus 70 ~~~C~~Cg~~~~~~~------------~~~~CP~Cgs~ 95 (115)
T TIGR00100 70 ECECEDCSEEVSPEI------------DLYRCPKCHGI 95 (115)
T ss_pred EEEcccCCCEEecCC------------cCccCcCCcCC
Confidence 478999998886531 14779999853
No 200
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=38.36 E-value=13 Score=25.12 Aligned_cols=32 Identities=22% Similarity=0.588 Sum_probs=19.3
Q ss_pred CCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccc
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (345)
..|.|++|++.--.+ .....|.|.-|++.|.-
T Consensus 35 a~y~CpfCgk~~vkR----------~a~GIW~C~~C~~~~AG 66 (90)
T PRK03976 35 AKHVCPVCGRPKVKR----------VGTGIWECRKCGAKFAG 66 (90)
T ss_pred cCccCCCCCCCceEE----------EEEEEEEcCCCCCEEeC
Confidence 357888886543221 12245888888887753
No 201
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=37.91 E-value=2.4 Score=23.63 Aligned_cols=10 Identities=20% Similarity=1.026 Sum_probs=8.2
Q ss_pred ccCCcCCccc
Q psy8793 36 FTCNICSRKF 45 (345)
Q Consensus 36 ~~C~~C~~~f 45 (345)
|.|..|+..|
T Consensus 29 y~C~~C~~~w 38 (39)
T PF01096_consen 29 YVCCNCGHRW 38 (39)
T ss_dssp EEESSSTEEE
T ss_pred EEeCCCCCee
Confidence 7898898765
No 202
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.72 E-value=18 Score=30.95 Aligned_cols=28 Identities=14% Similarity=0.507 Sum_probs=16.5
Q ss_pred cCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccc
Q psy8793 264 HNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMA 305 (345)
Q Consensus 264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 305 (345)
.+.+-..|..|+-.+.. ...+|+.||..
T Consensus 206 ~G~RyL~CslC~teW~~--------------~R~~C~~Cg~~ 233 (305)
T TIGR01562 206 TGLRYLSCSLCATEWHY--------------VRVKCSHCEES 233 (305)
T ss_pred CCceEEEcCCCCCcccc--------------cCccCCCCCCC
Confidence 34555677777755421 23467777753
No 203
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=37.40 E-value=22 Score=31.87 Aligned_cols=29 Identities=14% Similarity=0.581 Sum_probs=17.6
Q ss_pred ecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCCh
Q psy8793 270 KCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTN 309 (345)
Q Consensus 270 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 309 (345)
.|+.||.+..+ .|...|+|+.||+++...
T Consensus 352 ~Cp~Cg~~m~S-----------~G~~g~rC~kCg~~~~~~ 380 (421)
T COG1571 352 VCPRCGGRMKS-----------AGRNGFRCKKCGTRARET 380 (421)
T ss_pred CCCccCCchhh-----------cCCCCcccccccccCCcc
Confidence 57777765433 222367777777776543
No 204
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=37.25 E-value=6.7 Score=21.95 Aligned_cols=32 Identities=22% Similarity=0.674 Sum_probs=13.9
Q ss_pred CcCCCCCccccCChHHHHHHhhhhcCCCccccccchhh
Q psy8793 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKV 333 (345)
Q Consensus 296 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 333 (345)
|.+|..|+.... -......+.+.+.|.+|+..
T Consensus 2 p~rC~~C~aylN------p~~~~~~~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 2 PVRCRRCRAYLN------PFCQFDDGGKTWICNFCGTK 33 (40)
T ss_dssp S-B-TTT--BS-------TTSEEETTTTEEEETTT--E
T ss_pred ccccCCCCCEEC------CcceEcCCCCEEECcCCCCc
Confidence 345666664332 22333345566888888764
No 205
>KOG4377|consensus
Probab=37.25 E-value=19 Score=31.69 Aligned_cols=24 Identities=21% Similarity=0.657 Sum_probs=19.2
Q ss_pred eecCc--CccccCChHHHHHHHHHhC
Q psy8793 269 FKCTK--CDKVFQHIQLLNRHQLVHM 292 (345)
Q Consensus 269 ~~C~~--C~~~f~~~~~l~~H~~~h~ 292 (345)
|.|.. |+..+.+-+++.+|.+.|-
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkrkhe 427 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKRKHE 427 (480)
T ss_pred eeecccCCceEEEehhhhhhhhhhhh
Confidence 56755 8888888889999888773
No 206
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=37.19 E-value=21 Score=25.04 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=7.6
Q ss_pred CceeecCcCccccC
Q psy8793 266 NEIFKCTKCDKVFQ 279 (345)
Q Consensus 266 ~~~~~C~~C~~~f~ 279 (345)
+..|.|+.|+..+.
T Consensus 17 g~~~iCpeC~~EW~ 30 (109)
T TIGR00686 17 GTQLICPSCLYEWN 30 (109)
T ss_pred CCeeECcccccccc
Confidence 33456666665554
No 207
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=36.56 E-value=39 Score=27.69 Aligned_cols=73 Identities=16% Similarity=0.427 Sum_probs=39.9
Q ss_pred hhhHHHHHHHhcCC-----CCccCccccccCCChhHHHHHhhhhcCCceeecCcCccccCChHHHHHHHHHhCCCCCcCC
Q psy8793 225 ASSLTKHMKARLGR-----QPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299 (345)
Q Consensus 225 ~~~l~~H~~~~~~~-----~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C 299 (345)
...|......+.+. ..|.|..|+...=. +.-...+.-.|..|.+.|.---. ..-=|..-|.|
T Consensus 92 e~Nlrm~d~a~~~~ip~~drqFaC~~Cd~~WwR--------rvp~rKeVSRCr~C~~rYDPVP~-----dkmwG~aef~C 158 (278)
T PF15135_consen 92 EENLRMFDDAQENLIPSVDRQFACSSCDHMWWR--------RVPQRKEVSRCRKCRKRYDPVPC-----DKMWGIAEFHC 158 (278)
T ss_pred HHHHHHhhhhhhccccccceeeeccccchHHHh--------ccCcccccccccccccccCCCcc-----ccccceeeeec
Confidence 45555555555443 66888888754210 11112233578888887742110 00012334889
Q ss_pred CCCccccCChH
Q psy8793 300 PQCPMAYKTNI 310 (345)
Q Consensus 300 ~~C~~~f~~~~ 310 (345)
+.|+..|.-..
T Consensus 159 ~~C~h~F~G~~ 169 (278)
T PF15135_consen 159 PKCRHNFRGFA 169 (278)
T ss_pred ccccccchhhh
Confidence 99998887544
No 208
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=36.53 E-value=20 Score=21.64 Aligned_cols=27 Identities=26% Similarity=0.656 Sum_probs=16.9
Q ss_pred ecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccccCC
Q psy8793 270 KCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKT 308 (345)
Q Consensus 270 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 308 (345)
.|..|++.|.. ..+.+.|..||..|-.
T Consensus 4 ~C~~C~~~F~~------------~~rk~~Cr~Cg~~~C~ 30 (57)
T cd00065 4 SCMGCGKPFTL------------TRRRHHCRNCGRIFCS 30 (57)
T ss_pred cCcccCccccC------------CccccccCcCcCCcCh
Confidence 46777777754 1344667777776643
No 209
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=36.41 E-value=18 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=14.6
Q ss_pred Cccccccchhhccccchhhh
Q psy8793 323 KPYVCEICNKVLTHRSSLIS 342 (345)
Q Consensus 323 ~~~~C~~C~~~f~~~~~l~~ 342 (345)
.-+.|+.|++.|...+..++
T Consensus 123 ~f~~C~~C~kiyW~GsH~~~ 142 (147)
T PF01927_consen 123 EFWRCPGCGKIYWEGSHWRR 142 (147)
T ss_pred eEEECCCCCCEecccccHHH
Confidence 35889999988887665543
No 210
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=35.97 E-value=35 Score=35.14 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=5.6
Q ss_pred CcCCCCCccc
Q psy8793 296 PYQCPQCPMA 305 (345)
Q Consensus 296 ~~~C~~C~~~ 305 (345)
.|.|+.||..
T Consensus 692 vy~CPsCGae 701 (1337)
T PRK14714 692 VYVCPDCGAE 701 (1337)
T ss_pred ceeCccCCCc
Confidence 3556666654
No 211
>KOG2907|consensus
Probab=35.90 E-value=19 Score=25.36 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=8.2
Q ss_pred cccccchhhccc
Q psy8793 325 YVCEICNKVLTH 336 (345)
Q Consensus 325 ~~C~~C~~~f~~ 336 (345)
|.|+.|++.|..
T Consensus 103 YTC~kC~~k~~e 114 (116)
T KOG2907|consen 103 YTCPKCKYKFTE 114 (116)
T ss_pred EEcCccceeeec
Confidence 777777776653
No 212
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=35.86 E-value=19 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.785 Sum_probs=10.2
Q ss_pred CccCCCCCCCCCCC
Q psy8793 7 QYQCSQCPKAFNQK 20 (345)
Q Consensus 7 ~~~C~~C~~~f~~~ 20 (345)
||+|..|+..|=..
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 67888888887543
No 213
>KOG3408|consensus
Probab=35.78 E-value=29 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCceeecCcCccccCChHHHHHHHHH
Q psy8793 265 NNEIFKCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 265 ~~~~~~C~~C~~~f~~~~~l~~H~~~ 290 (345)
+...|-|-.|.+-|.+...|..|.++
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhc
Confidence 44568999999999999999999875
No 214
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=35.72 E-value=93 Score=18.95 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=13.4
Q ss_pred CccccCChHHHHHHHHHhCCCCCcCCCCCccccC
Q psy8793 274 CDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYK 307 (345)
Q Consensus 274 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 307 (345)
||..|. ...+..+++. ...||.|+..++
T Consensus 19 ~G~v~~-~~~i~~~~~~-----~~~cP~~~~~~~ 46 (63)
T smart00504 19 SGQTYE-RRAIEKWLLS-----HGTDPVTGQPLT 46 (63)
T ss_pred CCCEEe-HHHHHHHHHH-----CCCCCCCcCCCC
Confidence 455552 3334444443 124666666553
No 215
>KOG4124|consensus
Probab=35.30 E-value=16 Score=31.43 Aligned_cols=22 Identities=41% Similarity=0.825 Sum_probs=16.3
Q ss_pred CCccccccchhhccccchhhhc
Q psy8793 322 AKPYVCEICNKVLTHRSSLISH 343 (345)
Q Consensus 322 ~~~~~C~~C~~~f~~~~~l~~H 343 (345)
.|+|+|++|.+.+..-..|.-|
T Consensus 396 nk~~r~~i~~~~~k~~~~l~~~ 417 (442)
T KOG4124|consen 396 NKPYRCEVCSKRYKNLNGLKYH 417 (442)
T ss_pred cCcccChhhhhhhccCCCCCce
Confidence 4678888888887776666554
No 216
>PF12907 zf-met2: Zinc-binding
Probab=35.23 E-value=23 Score=19.92 Aligned_cols=8 Identities=25% Similarity=0.837 Sum_probs=3.6
Q ss_pred ecCcCccc
Q psy8793 270 KCTKCDKV 277 (345)
Q Consensus 270 ~C~~C~~~ 277 (345)
+|.+|...
T Consensus 3 ~C~iC~qt 10 (40)
T PF12907_consen 3 ICKICRQT 10 (40)
T ss_pred CcHHhhHH
Confidence 44445433
No 217
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.05 E-value=18 Score=35.15 Aligned_cols=37 Identities=22% Similarity=0.566 Sum_probs=24.1
Q ss_pred ccCCCCCCCCC---CCchhHHHHhhhcCCCCccCCcCCcc
Q psy8793 8 YQCSQCPKAFN---QKGNLKEHFRIHTGEKPFTCNICSRK 44 (345)
Q Consensus 8 ~~C~~C~~~f~---~~~~l~~H~~~h~~~~~~~C~~C~~~ 44 (345)
++|+.|+..+. ....|.-|.--+....|..|+.||-.
T Consensus 445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 56777766654 33455555555556778889999865
No 218
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.05 E-value=14 Score=23.86 Aligned_cols=31 Identities=23% Similarity=0.632 Sum_probs=16.1
Q ss_pred eecCcCccccCChHHHHHHHHHhCCCCCcCCCCCcccc
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAY 306 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 306 (345)
|.|..|+..|. +..||. +..--.|+.|+..+
T Consensus 13 Y~c~~cg~~~d----vvq~~~---ddplt~ce~c~a~~ 43 (82)
T COG2331 13 YECTECGNRFD----VVQAMT---DDPLTTCEECGARL 43 (82)
T ss_pred EeecccchHHH----HHHhcc---cCccccChhhChHH
Confidence 67777776552 333332 22223577777544
No 219
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.25 E-value=21 Score=18.35 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=4.5
Q ss_pred CccCCcCCccc
Q psy8793 35 PFTCNICSRKF 45 (345)
Q Consensus 35 ~~~C~~C~~~f 45 (345)
.|.|..|+..+
T Consensus 15 ~Y~C~~Cdf~l 25 (30)
T PF07649_consen 15 FYRCSECDFDL 25 (30)
T ss_dssp EEE-TTT----
T ss_pred eEECccCCCcc
Confidence 57788887643
No 220
>PRK10220 hypothetical protein; Provisional
Probab=33.50 E-value=32 Score=24.17 Aligned_cols=13 Identities=15% Similarity=0.812 Sum_probs=6.9
Q ss_pred ceeecCcCccccC
Q psy8793 267 EIFKCTKCDKVFQ 279 (345)
Q Consensus 267 ~~~~C~~C~~~f~ 279 (345)
..|.|+.|+..+.
T Consensus 19 ~~~vCpeC~hEW~ 31 (111)
T PRK10220 19 GMYICPECAHEWN 31 (111)
T ss_pred CeEECCcccCcCC
Confidence 3455555555554
No 221
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Pirh2 is an eukaryotic ubiquitin protein ligase, which has been shown to promote p53 degradation in mammals. Pirh2 physically interacts with p53 and promotes ubiquitination of p53 independently of MDM2. Like MDM2, Pirh2 is thought to participate in an autoregulatory feedback loop that controls p53 function. Pirh2 proteins contain three distinct zinc fingers, the CHY-type, the CTCHY-type which is C-terminal to the CHY-type zinc finger and a RING finger. The CHY-type zinc finger has no currently known function []. As well as Pirh2, the CHY-type zinc finger is also found in the following proteins: Yeast helper of Tim protein 13. Hot13 may have a role in the assembly and recycling of the small Tims, a complex of the mitochondrial intermembrane space that participates in the TIM22 import pathway for assembly of the inner membrane [] Several plant hypothetical proteins that also contain haemerythrin cation binding domains Several protozoan hypothetical proteins that also contain a Myb domain The solution structure of this zinc finger has been solved and binds 3 zinc atoms as shown in the following schematic representation: ++---------+-----+ || | | CXHYxxxxxxxxxCCxxxxxCxxCHxxxxxHxxxxxxxxxxxCxxCxxxxxxxxxCxxC | | | | | | | | +-+-----------------+--+ +--+---------+--+ 'C': conserved cysteine involved in the binding of one zinc atom. 'H': conserved histidine involved in the binding of one zinc atom. More information about these proteins can be found at Protein of the Month: Zinc Fingers []; GO: 0008270 zinc ion binding; PDB: 2DKT_A 2K2C_A.
Probab=33.25 E-value=3.1 Score=26.85 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=4.8
Q ss_pred CccCccccccC
Q psy8793 240 PVSCDICHKEF 250 (345)
Q Consensus 240 ~~~C~~C~~~f 250 (345)
...|..|+..+
T Consensus 41 ~v~Cg~C~~~~ 51 (71)
T PF05495_consen 41 RVICGKCRTEQ 51 (71)
T ss_dssp EEEETTT--EE
T ss_pred CeECCCCCCcc
Confidence 45566666544
No 222
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=32.87 E-value=21 Score=20.03 Aligned_cols=12 Identities=25% Similarity=0.877 Sum_probs=10.1
Q ss_pred Cccccccccccc
Q psy8793 150 KPHTCELCSKGF 161 (345)
Q Consensus 150 ~~~~C~~C~~~f 161 (345)
.+-.|++|+..|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 468999999887
No 223
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=32.83 E-value=19 Score=26.27 Aligned_cols=58 Identities=22% Similarity=0.582 Sum_probs=35.1
Q ss_pred cCCceeecCcCccccCChHHHHHHHHHhCCCCCcCC---CCCccccCChHHHHHHhhhhcCCCccccccchhhccccch
Q psy8793 264 HNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC---PQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSS 339 (345)
Q Consensus 264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C---~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~ 339 (345)
.+.+.|+|++|......+.-| +|-.| ..|+.-+ .+|=+|-..|. +|+.|.-+|.+.+.
T Consensus 76 ~d~~lYeCnIC~etS~ee~FL----------KPneCCgY~iCn~Cy---a~LWK~~~~yp-----vCPvCkTSFKss~~ 136 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERFL----------KPNECCGYSICNACY---ANLWKFCNLYP-----VCPVCKTSFKSSSS 136 (140)
T ss_pred cCCCceeccCcccccchhhcC----------CcccccchHHHHHHH---HHHHHHcccCC-----CCCccccccccccc
Confidence 356778888888766543322 33333 3444443 45555544443 69999999987654
No 224
>KOG3940|consensus
Probab=32.30 E-value=24 Score=29.77 Aligned_cols=20 Identities=25% Similarity=0.700 Sum_probs=16.5
Q ss_pred ccccccccccCCHHHHHHHHh
Q psy8793 152 HTCELCSKGFLSAESYKCHLR 172 (345)
Q Consensus 152 ~~C~~C~~~f~~~~~l~~H~~ 172 (345)
..|++|-+.|. ...-..|+.
T Consensus 131 iQcpYC~RrFN-a~AAeRHin 150 (351)
T KOG3940|consen 131 NQCPYCTRRFN-AQAAERHIN 150 (351)
T ss_pred hccchhhhccc-hhhhhhccc
Confidence 57999999999 666777874
No 225
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.26 E-value=25 Score=25.30 Aligned_cols=27 Identities=22% Similarity=0.773 Sum_probs=18.1
Q ss_pred CCccCCCCCCCCCCCchhHHHHhhhcCCCCc-cCCcCCcc
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPF-TCNICSRK 44 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~-~C~~C~~~ 44 (345)
-.+.|..|+..|.... ..| .||.||..
T Consensus 70 ~~~~C~~Cg~~~~~~~------------~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNA------------LDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCC------------ccCCcCcCCCCC
Confidence 3478999998886431 124 49999854
No 226
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.96 E-value=29 Score=33.35 Aligned_cols=8 Identities=25% Similarity=0.945 Sum_probs=4.2
Q ss_pred CccccccC
Q psy8793 243 CDICHKEF 250 (345)
Q Consensus 243 C~~C~~~f 250 (345)
|+.|+..+
T Consensus 18 C~~CG~~l 25 (645)
T PRK14559 18 CQKCGTSL 25 (645)
T ss_pred ccccCCCC
Confidence 55555444
No 227
>PRK00420 hypothetical protein; Validated
Probab=31.86 E-value=37 Score=24.19 Aligned_cols=28 Identities=11% Similarity=0.412 Sum_probs=19.6
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
-.|+.|+..+..- ......|+.||....
T Consensus 24 ~~CP~Cg~pLf~l-----------k~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 24 KHCPVCGLPLFEL-----------KDGEVVCPVHGKVYI 51 (112)
T ss_pred CCCCCCCCcceec-----------CCCceECCCCCCeee
Confidence 4799999877531 235688999998653
No 228
>KOG0717|consensus
Probab=31.77 E-value=29 Score=31.26 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.5
Q ss_pred eeecCcCccccCChHHHHHHHHH
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~ 290 (345)
.+-|..|+++|.+..+|..|..+
T Consensus 292 ~lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 292 VLYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred ceEEeeccccccchHHHHhhHHH
Confidence 38899999999999999999764
No 229
>COG1773 Rubredoxin [Energy production and conversion]
Probab=31.72 E-value=18 Score=21.95 Aligned_cols=12 Identities=25% Similarity=0.958 Sum_probs=6.2
Q ss_pred CccCCCCCCCCC
Q psy8793 7 QYQCSQCPKAFN 18 (345)
Q Consensus 7 ~~~C~~C~~~f~ 18 (345)
.|+|.+|+..|.
T Consensus 3 ~~~C~~CG~vYd 14 (55)
T COG1773 3 RWRCSVCGYVYD 14 (55)
T ss_pred ceEecCCceEec
Confidence 345555555554
No 230
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=31.55 E-value=13 Score=26.07 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=15.3
Q ss_pred CCccCCCCCCCCCC-CchhHHHHhhh
Q psy8793 6 KQYQCSQCPKAFNQ-KGNLKEHFRIH 30 (345)
Q Consensus 6 ~~~~C~~C~~~f~~-~~~l~~H~~~h 30 (345)
+.-+| .||..|-+ +.+.+.|...+
T Consensus 23 k~vkc-~CGh~f~d~r~NwK~~alv~ 47 (112)
T PF08882_consen 23 KVVKC-DCGHEFCDARENWKLGALVY 47 (112)
T ss_pred ceeec-cCCCeecChhcChhhCcEEE
Confidence 34455 59999973 56666665543
No 231
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=31.37 E-value=24 Score=24.47 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=21.0
Q ss_pred CCCccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccc
Q psy8793 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTT 47 (345)
Q Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (345)
...|.|+.|+. ..-.-.+.. +..-..|+.||..+..
T Consensus 19 pt~f~CP~Cge-~~v~v~~~k------~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 19 PKIFECPRCGK-VSISVKIKK------NIAIITCGNCGLYTEF 54 (99)
T ss_pred CcEeECCCCCC-eEeeeecCC------CcceEECCCCCCccCE
Confidence 34689999993 221111111 2333689999988754
No 232
>KOG2272|consensus
Probab=31.14 E-value=16 Score=29.75 Aligned_cols=19 Identities=16% Similarity=0.369 Sum_probs=10.0
Q ss_pred CCccccccccCccccchHhHH
Q psy8793 178 KPVTCTFENCTETFVESWAMR 198 (345)
Q Consensus 178 ~~~~C~~~~C~~~f~~~~~l~ 198 (345)
.-|.|. .|.....+...++
T Consensus 98 ~CF~Cd--~Cn~~Lad~gf~r 116 (332)
T KOG2272|consen 98 ACFRCD--LCNKHLADQGFYR 116 (332)
T ss_pred ccchhH--HHHHHHhhhhhHh
Confidence 345555 4666555554444
No 233
>PF14369 zf-RING_3: zinc-finger
Probab=30.02 E-value=31 Score=18.67 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=19.3
Q ss_pred CccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
.|-|..|++...-. .. ....-.|+.|+-.|-
T Consensus 2 ~ywCh~C~~~V~~~--------~~-~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 2 RYWCHQCNRFVRIA--------PS-PDSDVACPRCHGGFV 32 (35)
T ss_pred CEeCccCCCEeEeC--------cC-CCCCcCCcCCCCcEe
Confidence 57888888877521 11 112236999988774
No 234
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=29.37 E-value=14 Score=19.82 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=2.9
Q ss_pred CCCCccccCC
Q psy8793 299 CPQCPMAYKT 308 (345)
Q Consensus 299 C~~C~~~f~~ 308 (345)
|..|++.|..
T Consensus 6 C~eC~~~f~d 15 (34)
T PF01286_consen 6 CDECGKPFMD 15 (34)
T ss_dssp -TTT--EES-
T ss_pred HhHhCCHHHH
Confidence 4445544443
No 235
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=28.94 E-value=39 Score=30.29 Aligned_cols=29 Identities=21% Similarity=0.637 Sum_probs=23.0
Q ss_pred cCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCccccch
Q psy8793 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTY 48 (345)
Q Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 48 (345)
.|+.|+.+..+. +..-|+|+-|++++...
T Consensus 352 ~Cp~Cg~~m~S~-----------G~~g~rC~kCg~~~~~~ 380 (421)
T COG1571 352 VCPRCGGRMKSA-----------GRNGFRCKKCGTRARET 380 (421)
T ss_pred CCCccCCchhhc-----------CCCCcccccccccCCcc
Confidence 899999988764 33369999999998653
No 236
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.86 E-value=40 Score=24.14 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=7.4
Q ss_pred eeecCcCccccC
Q psy8793 268 IFKCTKCDKVFQ 279 (345)
Q Consensus 268 ~~~C~~C~~~f~ 279 (345)
.+.|..|+..|.
T Consensus 70 ~~~C~~Cg~~~~ 81 (114)
T PRK03681 70 ECWCETCQQYVT 81 (114)
T ss_pred EEEcccCCCeee
Confidence 366777776553
No 237
>KOG1994|consensus
Probab=28.78 E-value=18 Score=29.06 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=20.6
Q ss_pred CCCccCCcCCccccchhhhccccc
Q psy8793 33 EKPFTCNICSRKFTTYSQVRRSSN 56 (345)
Q Consensus 33 ~~~~~C~~C~~~f~~~~~l~~H~~ 56 (345)
..-|+|-+||..|.+...|..|.-
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehCP 260 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHCP 260 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhCC
Confidence 344999999999999999988864
No 238
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.60 E-value=46 Score=31.09 Aligned_cols=9 Identities=22% Similarity=0.766 Sum_probs=5.0
Q ss_pred ccCCCcccc
Q psy8793 214 PCDKCEKVY 222 (345)
Q Consensus 214 ~C~~C~~~f 222 (345)
.|..||...
T Consensus 215 ~C~~Cg~~~ 223 (505)
T TIGR00595 215 LCRSCGYIL 223 (505)
T ss_pred EhhhCcCcc
Confidence 566665544
No 239
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=28.48 E-value=14 Score=28.02 Aligned_cols=11 Identities=18% Similarity=1.213 Sum_probs=6.3
Q ss_pred eeecCcCcccc
Q psy8793 268 IFKCTKCDKVF 278 (345)
Q Consensus 268 ~~~C~~C~~~f 278 (345)
.|.|+.|+..+
T Consensus 123 ~~~C~~C~~~~ 133 (157)
T PF10263_consen 123 VYRCPSCGREY 133 (157)
T ss_pred EEEcCCCCCEe
Confidence 35666666554
No 240
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=28.45 E-value=7.1 Score=33.93 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCCCCchh---HHH-HhhhcC-CCCccCCcCCccccchhhh
Q psy8793 6 KQYQCSQCPKAFNQKGNL---KEH-FRIHTG-EKPFTCNICSRKFTTYSQV 51 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l---~~H-~~~h~~-~~~~~C~~C~~~f~~~~~l 51 (345)
+.+.|..|++++...... ..| +..|.. .+-|.|..|++++.+..-|
T Consensus 251 kav~C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~sl~r~ 301 (344)
T PF09332_consen 251 KAVTCKQCKYTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTISLERL 301 (344)
T ss_dssp EEEEETTT--EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEESSSS
T ss_pred EEEEcCCCCCcccCcchhHHhcCCceEEeeeeeeeEECCCCCCeeeecccC
Confidence 348899999888765433 335 333433 3448999999987654333
No 241
>KOG2807|consensus
Probab=28.09 E-value=92 Score=26.80 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=22.1
Q ss_pred CcccccccccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHH
Q psy8793 150 KPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMR 198 (345)
Q Consensus 150 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~ 198 (345)
..|.||.|.... -..|..|+ .|+.+..+...|.
T Consensus 275 ~Gy~CP~Ckakv--------------CsLP~eCp--iC~ltLVss~hLA 307 (378)
T KOG2807|consen 275 GGYFCPQCKAKV--------------CSLPIECP--ICSLTLVSSPHLA 307 (378)
T ss_pred CceeCCcccCee--------------ecCCccCC--ccceeEecchHHH
Confidence 358888887654 34567776 5877777666655
No 242
>KOG3507|consensus
Probab=28.06 E-value=12 Score=22.73 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=7.0
Q ss_pred CcCCCCCccccCC
Q psy8793 296 PYQCPQCPMAYKT 308 (345)
Q Consensus 296 ~~~C~~C~~~f~~ 308 (345)
.++|.+||.+..+
T Consensus 37 ~irCReCG~RIly 49 (62)
T KOG3507|consen 37 VIRCRECGYRILY 49 (62)
T ss_pred cEehhhcchHHHH
Confidence 4556666655433
No 243
>KOG1842|consensus
Probab=26.99 E-value=37 Score=30.41 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=12.3
Q ss_pred eecCcCccccCChHHHHHHHHH
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLV 290 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~ 290 (345)
|.||+|...|.+.++|..|.-.
T Consensus 16 flCPiC~~dl~~~~~L~~H~d~ 37 (505)
T KOG1842|consen 16 FLCPICLLDLPNLSALNDHLDV 37 (505)
T ss_pred ccCchHhhhhhhHHHHHHHHhh
Confidence 5555555555555555555543
No 244
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=26.93 E-value=52 Score=30.07 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=22.0
Q ss_pred eeecCcCccccCChHHHHHHHHH-hCC
Q psy8793 268 IFKCTKCDKVFQHIQLLNRHQLV-HMD 293 (345)
Q Consensus 268 ~~~C~~C~~~f~~~~~l~~H~~~-h~~ 293 (345)
-+.|+.|.+.|.+...+..|+.. |.+
T Consensus 57 FWiCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 57 FWICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred EeeCCcccceeCCHHHHHHHHHHhhhh
Confidence 37899999999999999999874 644
No 245
>PTZ00448 hypothetical protein; Provisional
Probab=26.75 E-value=37 Score=29.72 Aligned_cols=22 Identities=9% Similarity=0.392 Sum_probs=10.9
Q ss_pred ccCCcCCccccchhhhcccccc
Q psy8793 36 FTCNICSRKFTTYSQVRRSSNT 57 (345)
Q Consensus 36 ~~C~~C~~~f~~~~~l~~H~~~ 57 (345)
|.|..|+..|.+....+.|+++
T Consensus 315 ~tC~~C~v~F~~~~~qR~H~KS 336 (373)
T PTZ00448 315 LLCRKCNIQLMDHNAFKQHYRS 336 (373)
T ss_pred ccccccccccCCHHHHHHHhhh
Confidence 4455555555444444555544
No 246
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=26.72 E-value=20 Score=20.37 Aligned_cols=15 Identities=27% Similarity=0.795 Sum_probs=8.3
Q ss_pred Cccccccchhhcccc
Q psy8793 323 KPYVCEICNKVLTHR 337 (345)
Q Consensus 323 ~~~~C~~C~~~f~~~ 337 (345)
.||.|..|+..|=..
T Consensus 12 ~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLK 26 (43)
T ss_dssp SHEE-TTTS-EE-TT
T ss_pred CCeECCCCCcccCcc
Confidence 467888888877543
No 247
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.52 E-value=30 Score=17.11 Aligned_cols=6 Identities=33% Similarity=1.309 Sum_probs=2.7
Q ss_pred cCcCcc
Q psy8793 271 CTKCDK 276 (345)
Q Consensus 271 C~~C~~ 276 (345)
|+.||.
T Consensus 5 Cp~Cg~ 10 (26)
T PF13248_consen 5 CPNCGA 10 (26)
T ss_pred CcccCC
Confidence 444443
No 248
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=26.17 E-value=79 Score=24.04 Aligned_cols=56 Identities=25% Similarity=0.378 Sum_probs=40.5
Q ss_pred CcccccccccccCCHHHHHHHHhhhcCCCCccccccccCccccchHhHHHHhhhhcCC
Q psy8793 150 KPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNK 207 (345)
Q Consensus 150 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~~~~ 207 (345)
..+.||.|-....-+..... -+.+.+.+.-.|..+.|.+. .+..+|.+|.+..|..
T Consensus 79 ~~L~CPLCRG~V~GWtvve~-AR~~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~HP~ 134 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVVEP-ARRFLNAKKRSCSQESCSFS-GTYSELRKHARSEHPS 134 (162)
T ss_pred ccccCccccCceeceEEchH-HHHHhccCCccCcccccccc-cCHHHHHHHHHhhCCC
Confidence 35889999877665554433 66777888889987777764 4556888888876653
No 249
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.91 E-value=47 Score=32.23 Aligned_cols=26 Identities=19% Similarity=0.643 Sum_probs=17.3
Q ss_pred cCCceeecCcCccccCChHHHHHHHHHhCCCCCcCCCCCccc
Q psy8793 264 HNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMA 305 (345)
Q Consensus 264 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 305 (345)
.......|..||... .+..|+.||-.
T Consensus 406 ~~~~~l~Ch~CG~~~----------------~p~~Cp~Cgs~ 431 (665)
T PRK14873 406 SAGGTPRCRWCGRAA----------------PDWRCPRCGSD 431 (665)
T ss_pred cCCCeeECCCCcCCC----------------cCccCCCCcCC
Confidence 345567888888522 36679999854
No 250
>KOG2636|consensus
Probab=25.58 E-value=41 Score=30.16 Aligned_cols=22 Identities=23% Similarity=0.762 Sum_probs=12.4
Q ss_pred CccCCCCC-CCCCCCchhHHHHh
Q psy8793 7 QYQCSQCP-KAFNQKGNLKEHFR 28 (345)
Q Consensus 7 ~~~C~~C~-~~f~~~~~l~~H~~ 28 (345)
.|.|.+|| ++|..+..+.+|..
T Consensus 401 ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 401 EYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred ccceeeccCccccCcHHHHHHhH
Confidence 35555555 55555555555543
No 251
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=25.56 E-value=54 Score=19.39 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=9.9
Q ss_pred CCccCCCCCCCCCCCchhHHHHh
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFR 28 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~ 28 (345)
++--|..|...|. +|..|+.
T Consensus 4 k~GYCE~C~~ky~---~l~~Hi~ 23 (49)
T PF07535_consen 4 KPGYCENCRVKYD---DLEEHIQ 23 (49)
T ss_pred CCccCccccchhh---hHHHHhC
Confidence 3444555555552 3555543
No 252
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=25.49 E-value=21 Score=28.30 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=25.4
Q ss_pred cCCCCCCCCCCCchhHHHHhhhcC---CCCccCCcCCccccchhhh
Q psy8793 9 QCSQCPKAFNQKGNLKEHFRIHTG---EKPFTCNICSRKFTTYSQV 51 (345)
Q Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l 51 (345)
.|+.|+....++-.+..+ --+-+ .-.|.|+.||++.+.-..+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~-IP~F~evii~sf~C~~CGyr~~ev~~~ 46 (192)
T TIGR00310 2 DCPSCGGECETVMKTVND-IPYFGEVLETSTICEHCGYRSNDVKTL 46 (192)
T ss_pred cCCCCCCCCEEEEEEEcC-CCCcceEEEEEEECCCCCCccceeEEC
Confidence 699999876665444432 11111 1237899999987654333
No 253
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.36 E-value=34 Score=23.88 Aligned_cols=7 Identities=57% Similarity=1.602 Sum_probs=3.8
Q ss_pred cccccch
Q psy8793 325 YVCEICN 331 (345)
Q Consensus 325 ~~C~~C~ 331 (345)
|.|..|+
T Consensus 32 y~C~~C~ 38 (102)
T PF11672_consen 32 YVCTPCD 38 (102)
T ss_pred EECCCCC
Confidence 5555554
No 254
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.99 E-value=13 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.846 Sum_probs=7.8
Q ss_pred ceeecCcCccccC
Q psy8793 267 EIFKCTKCDKVFQ 279 (345)
Q Consensus 267 ~~~~C~~C~~~f~ 279 (345)
..|.|..|++.|.
T Consensus 16 ~~~~C~~C~~~~~ 28 (70)
T PF07191_consen 16 GHYHCEACQKDYK 28 (70)
T ss_dssp TEEEETTT--EEE
T ss_pred CEEECccccccce
Confidence 4577888887774
No 255
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=24.83 E-value=40 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.561 Sum_probs=18.4
Q ss_pred ccCCCCCCCCCCCchhHHHHhhhcCCCCccCCcCCcccc
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (345)
+.|+.||..... + +....||+|++.+.
T Consensus 29 ~hCp~Cg~PLF~----------K--dG~v~CPvC~~~~~ 55 (131)
T COG1645 29 KHCPKCGTPLFR----------K--DGEVFCPVCGYREV 55 (131)
T ss_pred hhCcccCCccee----------e--CCeEECCCCCceEE
Confidence 468888876543 2 34478999998553
No 256
>PRK05978 hypothetical protein; Provisional
Probab=24.82 E-value=28 Score=26.27 Aligned_cols=8 Identities=25% Similarity=1.012 Sum_probs=3.9
Q ss_pred CCCCcccc
Q psy8793 299 CPQCPMAY 306 (345)
Q Consensus 299 C~~C~~~f 306 (345)
|+.||..|
T Consensus 55 C~~CG~~~ 62 (148)
T PRK05978 55 CAACGEDF 62 (148)
T ss_pred ccccCCcc
Confidence 55555444
No 257
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=56 Score=25.03 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=7.7
Q ss_pred cccccchhhccccc
Q psy8793 325 YVCEICNKVLTHRS 338 (345)
Q Consensus 325 ~~C~~C~~~f~~~~ 338 (345)
|.|+.|++.|.-.+
T Consensus 131 ~~C~~CgkiYW~Gs 144 (165)
T COG1656 131 YRCPKCGKIYWKGS 144 (165)
T ss_pred eECCCCcccccCch
Confidence 45666666555443
No 258
>KOG3002|consensus
Probab=23.96 E-value=49 Score=28.38 Aligned_cols=74 Identities=23% Similarity=0.425 Sum_probs=45.3
Q ss_pred CCccCccccccCCChhHHHHHhhhhcCCceeecCc----CccccCChHHHHHHHHHhCCCCCcCCC----CCccccCChH
Q psy8793 239 QPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTK----CDKVFQHIQLLNRHQLVHMDTRPYQCP----QCPMAYKTNI 310 (345)
Q Consensus 239 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~ 310 (345)
...+|+.|...+... ...++.+.-....+.|+. |.+.|.-... ..|.+.-.- .|+.|| .|...= ...
T Consensus 79 ~~~~CP~Cr~~~g~~--R~~amEkV~e~~~vpC~~~~~GC~~~~~Y~~~-~~HE~~C~f-~~~~CP~p~~~C~~~G-~~~ 153 (299)
T KOG3002|consen 79 VSNKCPTCRLPIGNI--RCRAMEKVAEAVLVPCKNAKLGCTKSFPYGEK-SKHEKVCEF-RPCSCPVPGAECKYTG-SYK 153 (299)
T ss_pred hcccCCccccccccH--HHHHHHHHHHhceecccccccCCceeeccccc-ccccccccc-CCcCCCCCcccCCccC-cHH
Confidence 446788888877644 444555555666678875 8888866555 556554333 566664 444432 346
Q ss_pred HHHHHhh
Q psy8793 311 SLSAHLM 317 (345)
Q Consensus 311 ~l~~H~~ 317 (345)
.|..|.+
T Consensus 154 ~l~~H~~ 160 (299)
T KOG3002|consen 154 DLYAHLN 160 (299)
T ss_pred HHHHHHH
Confidence 6677765
No 259
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=23.93 E-value=68 Score=25.26 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=18.3
Q ss_pred eecCcCccccCChHHHHHHHHHhCCCCCcCCCCCcccc
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAY 306 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 306 (345)
+.|+.|+ +......=++.-..+....|..||..+
T Consensus 7 ~~Cp~Cg----~eev~hEVik~~g~~~lvrC~eCG~V~ 40 (201)
T COG1326 7 IECPSCG----SEEVSHEVIKERGREPLVRCEECGTVH 40 (201)
T ss_pred EECCCCC----cchhhHHHHHhcCCceEEEccCCCcEe
Confidence 5677777 122222223333444456788888666
No 260
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.47 E-value=63 Score=33.49 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=16.1
Q ss_pred eecCcCccccCChHHHHHHHHHhCCCCCcCCCCCcccc
Q psy8793 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAY 306 (345)
Q Consensus 269 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 306 (345)
+.|+.||..-. ...|+.||...
T Consensus 668 rkCPkCG~~t~----------------~~fCP~CGs~t 689 (1337)
T PRK14714 668 RRCPSCGTETY----------------ENRCPDCGTHT 689 (1337)
T ss_pred EECCCCCCccc----------------cccCcccCCcC
Confidence 88999997421 12699999775
No 261
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.27 E-value=53 Score=23.62 Aligned_cols=9 Identities=33% Similarity=1.276 Sum_probs=3.9
Q ss_pred ccccccchh
Q psy8793 324 PYVCEICNK 332 (345)
Q Consensus 324 ~~~C~~C~~ 332 (345)
.|.|.+|.+
T Consensus 94 ~WlC~vC~k 102 (118)
T PF02318_consen 94 IWLCKVCQK 102 (118)
T ss_dssp CEEEHHHHH
T ss_pred CEEChhhHH
Confidence 344444433
No 262
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=23.07 E-value=28 Score=27.64 Aligned_cols=19 Identities=37% Similarity=0.822 Sum_probs=0.0
Q ss_pred cccccchh-hccccchhhhc
Q psy8793 325 YVCEICNK-VLTHRSSLISH 343 (345)
Q Consensus 325 ~~C~~C~~-~f~~~~~l~~H 343 (345)
|.|.+||. +|..+....+|
T Consensus 102 y~CEICGN~~Y~GrkaFekH 121 (196)
T PF11931_consen 102 YKCEICGNQSYKGRKAFEKH 121 (196)
T ss_dssp --------------------
T ss_pred eeeEeCCCcceecHHHHHHh
Confidence 44444443 23333333333
No 263
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=23.07 E-value=28 Score=34.14 Aligned_cols=8 Identities=25% Similarity=0.820 Sum_probs=0.0
Q ss_pred ccccchhh
Q psy8793 326 VCEICNKV 333 (345)
Q Consensus 326 ~C~~C~~~ 333 (345)
.|+.|+..
T Consensus 694 ~C~~C~~~ 701 (900)
T PF03833_consen 694 ECPKCGRE 701 (900)
T ss_dssp --------
T ss_pred cccccccc
Confidence 46666654
No 264
>KOG2636|consensus
Probab=22.94 E-value=40 Score=30.23 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=19.2
Q ss_pred HHhCCCCCcCCCCCc-cccCChHHHHHHhh
Q psy8793 289 LVHMDTRPYQCPQCP-MAYKTNISLSAHLM 317 (345)
Q Consensus 289 ~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~ 317 (345)
+.|.-...|.|.+|| +++.-...+.+|-.
T Consensus 394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 394 KLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred hhcCCCcccceeeccCccccCcHHHHHHhH
Confidence 444445557777777 67777777777765
No 265
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.58 E-value=32 Score=20.65 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=6.1
Q ss_pred CCCCCccccCCh
Q psy8793 298 QCPQCPMAYKTN 309 (345)
Q Consensus 298 ~C~~C~~~f~~~ 309 (345)
.||+|+..|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999888653
No 266
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=22.55 E-value=40 Score=19.95 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=9.7
Q ss_pred CCccCCCCCCCCCCCchhHHHHh
Q psy8793 6 KQYQCSQCPKAFNQKGNLKEHFR 28 (345)
Q Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~ 28 (345)
++--|..|...|. +|..|+.
T Consensus 4 k~GYCE~Cr~kfd---~l~~Hi~ 23 (49)
T smart00586 4 KPGYCENCREKYD---DLETHLL 23 (49)
T ss_pred CCcccccHhHHHh---hHHHHhc
Confidence 4445555555552 4444543
No 267
>KOG0978|consensus
Probab=22.53 E-value=37 Score=32.63 Aligned_cols=44 Identities=16% Similarity=0.415 Sum_probs=22.6
Q ss_pred cCCCCCccccCChHHHH-HHhhhh------cCCCccccccchhhccccchh
Q psy8793 297 YQCPQCPMAYKTNISLS-AHLMKH------TGAKPYVCEICNKVLTHRSSL 340 (345)
Q Consensus 297 ~~C~~C~~~f~~~~~l~-~H~~~h------~~~~~~~C~~C~~~f~~~~~l 340 (345)
..|+.|+..+.+..-.. -|++-- .+-+.-+||.|+.+|..-.-+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 45666665555433222 343321 122335788888887654333
No 268
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=22.28 E-value=45 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=10.5
Q ss_pred CCceeecCcCccccC
Q psy8793 265 NNEIFKCTKCDKVFQ 279 (345)
Q Consensus 265 ~~~~~~C~~C~~~f~ 279 (345)
.+++++|+.||..|.
T Consensus 76 ~g~~~rC~eCG~~fk 90 (97)
T cd00924 76 KGKPKRCPECGHVFK 90 (97)
T ss_pred CCCceeCCCCCcEEE
Confidence 446777888877764
No 269
>PLN02294 cytochrome c oxidase subunit Vb
Probab=22.12 E-value=44 Score=25.69 Aligned_cols=16 Identities=25% Similarity=0.827 Sum_probs=12.1
Q ss_pred cCCceeecCcCccccC
Q psy8793 264 HNNEIFKCTKCDKVFQ 279 (345)
Q Consensus 264 ~~~~~~~C~~C~~~f~ 279 (345)
+.+++++|++||..|.
T Consensus 137 ~kGkp~RCpeCG~~fk 152 (174)
T PLN02294 137 EKGKSFECPVCTQYFE 152 (174)
T ss_pred cCCCceeCCCCCCEEE
Confidence 3567888888888774
No 270
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=21.85 E-value=84 Score=17.34 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=7.6
Q ss_pred CcCCCCCccccC-Ch-HHHHHHhh
Q psy8793 296 PYQCPQCPMAYK-TN-ISLSAHLM 317 (345)
Q Consensus 296 ~~~C~~C~~~f~-~~-~~l~~H~~ 317 (345)
.|-|.+|+..|+ +. +.-+.|..
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT-
T ss_pred CeecccccceecCCChHHHHHhhc
Confidence 366777777773 33 23345543
No 271
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=21.85 E-value=14 Score=21.52 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=16.9
Q ss_pred cccccccccCCHHHHHHHHhhhcCCCCccccccccCcccc
Q psy8793 153 TCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFV 192 (345)
Q Consensus 153 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~~~C~~~f~ 192 (345)
.||.||.....+.....+. ...+.-+.|.-+.||..|.
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~--~~~~~Y~qC~N~~Cg~tfv 38 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSP--LTRELYCQCTNPECGHTFV 38 (47)
T ss_pred CcCCCCCeeEEEEchhhCc--ceEEEEEEECCCcCCCEEE
Confidence 3667776544443322221 1122334555445555554
No 272
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=48 Score=23.81 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCCCchhHHHHh-hhcCCCCccCCcCCccccch
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFR-IHTGEKPFTCNICSRKFTTY 48 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~ 48 (345)
-+|++|+.+.....-...=+. -+.-+.|-.|..||..|.+.
T Consensus 40 ~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwt 81 (160)
T COG4306 40 TQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWT 81 (160)
T ss_pred hcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcH
Confidence 578999888765433222222 13345667899999999763
No 273
>KOG4118|consensus
Probab=21.45 E-value=48 Score=20.71 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=13.0
Q ss_pred ccCCCCCCCCCCCchhHHHHh
Q psy8793 8 YQCSQCPKAFNQKGNLKEHFR 28 (345)
Q Consensus 8 ~~C~~C~~~f~~~~~l~~H~~ 28 (345)
|+|.+|.........+..|..
T Consensus 39 ~kCtVC~~~mpdpktfkqhfe 59 (74)
T KOG4118|consen 39 HKCTVCMVQMPDPKTFKQHFE 59 (74)
T ss_pred hhhHhhHhhCCCCchHHHHHh
Confidence 566666666666666666644
No 274
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=21.25 E-value=53 Score=27.88 Aligned_cols=22 Identities=23% Similarity=0.688 Sum_probs=12.7
Q ss_pred CccCccccccCCChhHHHHHhh
Q psy8793 240 PVSCDICHKEFTHPSSVLYHKQ 261 (345)
Q Consensus 240 ~~~C~~C~~~f~~~~~l~~H~~ 261 (345)
.|.|..|...|-..-+...|..
T Consensus 388 rY~Ce~CK~~FC~dCdvfiHe~ 409 (421)
T COG5151 388 RYQCELCKSTFCSDCDVFIHET 409 (421)
T ss_pred ceechhhhhhhhhhhHHHHHHH
Confidence 4666666666665555555533
No 275
>KOG0782|consensus
Probab=21.24 E-value=28 Score=32.17 Aligned_cols=50 Identities=18% Similarity=0.404 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCcCCCCCccccCChHHHHHHhhhhcCCC-ccccccchhhccccc
Q psy8793 283 LLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAK-PYVCEICNKVLTHRS 338 (345)
Q Consensus 283 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~ 338 (345)
.|.+|-=+|..-.-=+|..|++.|..+-. .|..+. -..|+.|..+|..+.
T Consensus 240 ~fvrHHWVHrrRqeGkC~~CgKgFQQKf~------FhsKEivAisCSWCKqayH~Kv 290 (1004)
T KOG0782|consen 240 GFVRHHWVHRRRQEGKCNTCGKGFQQKFF------FHSKEIVAISCSWCKQAYHLKV 290 (1004)
T ss_pred cchHHhHhhHhhhccccchhhhhhhhhee------eccccEEEEEehHHHHHhhcch
Confidence 44444333332222246666666643322 233222 256777766666554
No 276
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=21.00 E-value=42 Score=18.27 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=4.7
Q ss_pred cccchhhcccc
Q psy8793 327 CEICNKVLTHR 337 (345)
Q Consensus 327 C~~C~~~f~~~ 337 (345)
|+.|++.|...
T Consensus 5 CprC~kg~Hwa 15 (36)
T PF14787_consen 5 CPRCGKGFHWA 15 (36)
T ss_dssp -TTTSSSCS-T
T ss_pred CcccCCCcchh
Confidence 55555555443
No 277
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=20.73 E-value=46 Score=19.98 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=7.5
Q ss_pred CCCCCccccCC
Q psy8793 298 QCPQCPMAYKT 308 (345)
Q Consensus 298 ~C~~C~~~f~~ 308 (345)
.||+||..+..
T Consensus 2 ~CPyCge~~~~ 12 (52)
T PF14255_consen 2 QCPYCGEPIEI 12 (52)
T ss_pred CCCCCCCeeEE
Confidence 57888876653
No 278
>KOG3014|consensus
Probab=20.28 E-value=50 Score=27.19 Aligned_cols=26 Identities=15% Similarity=0.430 Sum_probs=21.1
Q ss_pred CccCCCCCCCCC--CCchhHHHHhhhcC
Q psy8793 7 QYQCSQCPKAFN--QKGNLKEHFRIHTG 32 (345)
Q Consensus 7 ~~~C~~C~~~f~--~~~~l~~H~~~h~~ 32 (345)
.-+|..|++.|+ +..+-..|.+.|..
T Consensus 37 ~~~C~~Cgm~Yt~~s~EDe~~H~~fH~~ 64 (257)
T KOG3014|consen 37 AVKCKECGMKYTVTSPEDEALHEKFHNR 64 (257)
T ss_pred ceehhhcCceecCCCHHHHHHHHHHHHh
Confidence 458999999998 56677789998874
No 279
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=20.21 E-value=88 Score=18.87 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=5.1
Q ss_pred CceeecCcCc
Q psy8793 266 NEIFKCTKCD 275 (345)
Q Consensus 266 ~~~~~C~~C~ 275 (345)
++...|+.||
T Consensus 44 ~~i~~Cp~Cg 53 (56)
T PF02591_consen 44 DEIVFCPNCG 53 (56)
T ss_pred CCeEECcCCC
Confidence 4445555555
No 280
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.13 E-value=40 Score=20.32 Aligned_cols=8 Identities=50% Similarity=1.555 Sum_probs=3.5
Q ss_pred CcCCCCCc
Q psy8793 296 PYQCPQCP 303 (345)
Q Consensus 296 ~~~C~~C~ 303 (345)
|..|+-|.
T Consensus 28 PlyCpKCK 35 (55)
T PF14205_consen 28 PLYCPKCK 35 (55)
T ss_pred cccCCCCC
Confidence 34444443
Done!