RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8793
(345 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 116 bits (294), Expect = 1e-31
Identities = 60/205 (29%), Positives = 84/205 (40%), Gaps = 35/205 (17%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
GEKP+ C C K F ++ H R H GEKP
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP---------------------- 49
Query: 202 RTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQ 261
+ C +C K +S LT+H + G +P C C K F+ +++ H Q
Sbjct: 50 -----------YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-Q 97
Query: 262 SIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHT 320
H E + C +C K F + L HQ H +PY+CP+C ++ +L H HT
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Query: 321 GAKPYVCEICNKVLTHRSSLISHYR 345
G KPY C C K + R +L H R
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQR 182
Score = 87.9 bits (219), Expect = 6e-21
Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H + HTGEKP+ C C K F + H R H GEKP C C ++F + +R H
Sbjct: 40 HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGKSFSQRANLRAHQ 97
Query: 202 RTCHN--KPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYH 259
RT H KP + C +C K +S + L H + G +P C C K F+ ++ H
Sbjct: 98 RT-HTGEKP----YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 260 KQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVH 291
Q H E +KC +C K F LN HQ H
Sbjct: 153 -QRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 85.2 bits (212), Expect = 6e-20
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 226 SSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLL 284
SS G +P +C C K F+ + H Q H E +KC +C K F + L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 285 NRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHY 344
RHQ H +PY+CP+C ++ +L AH HTG KPY C C K + + L +H
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Query: 345 R 345
R
Sbjct: 126 R 126
Score = 65.5 bits (161), Expect = 7e-13
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
G K Y C +C K+F++ +L EH R HTGEKP+ C C + F+ + R
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Score = 64.8 bits (159), Expect = 1e-12
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
H G K Y+C +C K+F+++ NL H R HTGEKP+ C C + F+ +
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Score = 64.8 bits (159), Expect = 1e-12
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
H G K Y+C +C K+F+Q+ NL+ H R HTGEKP+ C C + F+ + +R
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Score = 64.4 bits (158), Expect = 2e-12
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
H G K Y C +C K+F+Q +L+ H R HTGEKP+ C C + F+ +
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT 151
Score = 64.0 bits (157), Expect = 2e-12
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
H G K Y+C +C K+F+ K +L H R HTGEKP+ C C + F+ + +R
Sbjct: 44 HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRA 95
Score = 52.8 bits (128), Expect = 2e-08
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
H G K Y+C +C K+F+++ L H R HTG+K
Sbjct: 156 HTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 47.4 bits (114), Expect = 1e-06
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 16 AFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+ + + GEKP+ C C + F+ +
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAE 39
Score = 43.6 bits (104), Expect = 2e-05
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
H + HTGEKP+ C C K F ++ H R H G+K
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 42.0 bits (100), Expect = 7e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 304 MAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
++ + S A G KPY C C K + L H R
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR 42
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 96.5 bits (241), Expect = 4e-24
Identities = 45/217 (20%), Positives = 68/217 (31%), Gaps = 47/217 (21%)
Query: 142 HLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
K + C C + + HL +H GEKP C E C + F + +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 200 HVRTCHN--KPTVNRFPCD--KCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSS 255
H T H K F CD C+ ++ +++ KH
Sbjct: 63 HSLT-HTGEKN----FTCDSDGCDLRFTTKANMKKHFN---------------------- 95
Query: 256 VLYHKQSIHNNE---IFKCTK--CDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAYKT 308
+N ++ C C K F+ L HQ H PY+CP C +
Sbjct: 96 -------RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL 148
Query: 309 NISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
L H H G + C+ V + + H
Sbjct: 149 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Score = 70.3 bits (173), Expect = 1e-14
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 13/132 (9%)
Query: 142 HLKRHTGEKPHTCE--LCSKGFLSAESYKCHLRRHKGEK--PVTCTFENCTETFVESWAM 197
H HTGEK TC+ C F + + K H R K C FENC + F + +
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 198 RKHVRTCHN--KPTVNRFPC--DKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHP 253
+ H + H P + C + C+K +S S L +H K G D C
Sbjct: 123 KVHQFS-HTQQLP----YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Query: 254 SSVLYHKQSIHN 265
+ L H H
Sbjct: 178 TLYLKHVAECHQ 189
Score = 58.8 bits (143), Expect = 1e-10
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCN--ICSRKFTTYSQVRR 53
H G K + C + C K F +L H HTGEK FTC+ C +FTT + +++
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKK 92
Score = 57.2 bits (139), Expect = 5e-10
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCN--ICSRKFTTYSQVRR 53
K+Y CS C A+N+ L+ H HTGEKPF C C + FT+ + R
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Score = 54.9 bits (133), Expect = 3e-09
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 2 HQGIKQ--YQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCN--ICSRKFTTYSQVRR 53
IK Y C C KAF + LK H HT + P+ C C ++F+ S+++R
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR 154
Score = 53.4 bits (129), Expect = 1e-08
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEK--PFTCNI--CSRKFTTYSQ 50
H G K + C C F K N+K+HF K + C+ C + F ++Q
Sbjct: 67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Score = 53.0 bits (128), Expect = 1e-08
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRS 54
H Y+C C K F+ LK H ++H G + CS T++ +
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 37.2 bits (87), Expect = 0.003
Identities = 6/34 (17%), Positives = 8/34 (23%), Gaps = 2/34 (5%)
Query: 314 AHLMKHTGAKPYVCEI--CNKVLTHRSSLISHYR 345
K Y+C C L +H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLC 35
Score = 34.1 bits (79), Expect = 0.034
Identities = 3/27 (11%), Positives = 8/27 (29%), Gaps = 2/27 (7%)
Query: 26 HFRIHTGEKPFTCNI--CSRKFTTYSQ 50
+ K + C+ C + +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWK 29
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 79.5 bits (197), Expect = 1e-18
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQ---LVHM 292
G V C CHK+F + H H E F+C KC K + + L H+ ++
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 293 DTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+ + C C ++ + L H++ HTG PY C C++ + L SH
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 76.4 bits (189), Expect = 2e-17
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCH 205
+G C C K FLS K H R+H GEKP C C + + + +H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNC 59
Query: 206 ----NKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQ 261
+ F C C++ + L HM + G P C C ++F + H
Sbjct: 60 MNRSEQV----FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 262 SIHNNE 267
+H+
Sbjct: 116 KLHSGP 121
Score = 66.8 bits (164), Expect = 6e-14
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK---HTGAKPY 325
+C C K F L H H +P++CP+C Y +L H + + + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 326 VCEICNKVLTHRSSLISHYR 345
C +C + R L H
Sbjct: 68 TCSVCQETFRRRMELRLHMV 87
Score = 66.4 bits (163), Expect = 8e-14
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
++ + + CS C + F ++ L+ H HTGE P+ C+ CS++F ++
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS 112
Score = 65.6 bits (161), Expect = 1e-13
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
G +C C K F K LK H R HTGEKPF C C + + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLE 53
Score = 61.8 bits (151), Expect = 4e-12
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 22/111 (19%)
Query: 132 SHKIYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHK-------GEKPVTCTF 184
K YL K+H ++HTGEKP C C K + K +L H+ E+ TC+
Sbjct: 18 LSKYYL--KVHNRKHTGEKPFECPKCGKCY----FRKENLLEHEARNCMNRSEQVFTCS- 70
Query: 185 ENCTETFVESWAMRKHVRTCHN--KPTVNRFPCDKCEKVYSCASSLTKHMK 233
C ETF +R H+ + H P + C C + + L HM
Sbjct: 71 -VCQETFRRRMELRLHMVS-HTGEMP----YKCSSCSQQFMQKKDLQSHMI 115
Score = 61.0 bits (149), Expect = 7e-12
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFR---IHTGEKPFTCNICSRKFTTYSQVRR 53
H G K ++C +C K + +K NL EH ++ E+ FTC++C F ++R
Sbjct: 30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL 84
Score = 51.7 bits (125), Expect = 1e-08
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+CP C + + L H KHTG KP+ C C K + +L+ H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA 56
Score = 48.7 bits (117), Expect = 1e-07
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEH-FRIHTGEK 34
H G Y+CS C + F QK +L+ H ++H+G
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 38.6 bits (91), Expect = 5e-04
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 141 LHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHK-----GEK 178
LH+ HTGE P+ C CS+ F K L+ H G
Sbjct: 84 LHMVSHTGEMPYKCSSCSQQF----MQKKDLQSHMIKLHSGPS 122
Score = 36.7 bits (86), Expect = 0.002
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G+ C C+K + L H R
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR 28
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 76.4 bits (189), Expect = 2e-17
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 147 TGEKPHTCE--LCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTC 204
+ ++P C C+K + + H R+H GEKP C F++C F S +++H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR- 60
Query: 205 HN--KPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDI--CHKEFTHPSSVLYHK 260
H KP F C C++ +S + L H + G +P SC C K+F ++ H
Sbjct: 61 HTGVKP----FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH- 115
Query: 261 QSIH 264
++H
Sbjct: 116 HNMH 119
Score = 67.5 bits (166), Expect = 3e-14
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
H G+K +QC C + F++ +LK H R HTGEKPF+C C +KF ++ R
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Score = 67.5 bits (166), Expect = 3e-14
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 246 CHKEFTHPSSVLYHKQSIHNNE-IFKCTK--CDKVFQHIQLLNRHQLVHMDTRPYQCPQC 302
C+K + S + H H E ++C C++ F L RHQ H +P+QC C
Sbjct: 14 CNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 303 PMAYKTNISLSAHLMKHTGAKPYVCEI--CNKVLTHRSSLISHYR 345
+ + L H HTG KP+ C C K L+ H+
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 64.1 bits (157), Expect = 5e-13
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 140 KLHLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAM 197
++H ++HTGEKP+ C+ C + F ++ K H RRH G KP C + C F S +
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHL 82
Query: 198 RKHVRTCHN--KPTVNRFPCDK--CEKVYSCASSLTKHMK 233
+ H RT H KP F C C+K ++ + L +H
Sbjct: 83 KTHTRT-HTGEKP----FSCRWPSCQKKFARSDELVRHHN 117
Score = 63.7 bits (156), Expect = 7e-13
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
K H +RHTG KP C+ C + F ++ K H R H GEKP +C + +C + F S + +
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Query: 200 HVRT 203
H
Sbjct: 115 HHNM 118
Score = 63.3 bits (155), Expect = 8e-13
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
H G K YQC C + F++ LK H R HTG KPF C C RKF+
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD 80
Score = 59.5 bits (145), Expect = 2e-11
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 269 FKCT--KCDKVFQHIQLLNRHQLVHMDTRPYQC--PQCPMAYKTNISLSAHLMKHTGAKP 324
F C C+K + + L H H +PYQC C + + L H +HTG KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 325 YVCEICNKVLTHRSSLISHYR 345
+ C+ C + + L +H R
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTR 87
Score = 57.9 bits (141), Expect = 6e-11
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 6 KQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
+ + C+ C K + + +L+ H R HTGEKP+ C+ C R+F+ Q++R
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKR 56
Score = 36.7 bits (86), Expect = 0.002
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIH 30
H G K + C C K F + L H +H
Sbjct: 89 HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 30.6 bits (70), Expect = 0.29
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 320 TGAKPYVCE--ICNKVLTHRSSLISHYR 345
+ +P++C CNK S L H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR 29
Score = 26.3 bits (59), Expect = 7.8
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 31 TGEKPFTCN--ICSRKFTTYSQVRR 53
+ ++PF C C++++ S ++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQM 26
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 76.1 bits (188), Expect = 5e-17
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 139 HKLHLKRHTGEKPHTCELC-----SKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVE 193
H H K C + F + H+RRH GEKP CTFE C +++
Sbjct: 22 HINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR 81
Query: 194 SWAMRKHVRTCHN--KPTVNRFPC--DKCEKVYSCASSLTKHMKARL--GRQPVSCDI-- 245
++ H+R+ H KP + C + C K +S AS KH R +P C +
Sbjct: 82 LENLKTHLRS-HTGEKP----YMCEHEGCSKAFSNASDRAKHQN-RTHSNEKPYVCKLPG 135
Query: 246 CHKEFTHPSSVLYHK 260
C K +T PSS+ H
Sbjct: 136 CTKRYTDPSSLRKHV 150
Score = 74.6 bits (184), Expect = 2e-16
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 17/149 (11%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARL---GRQPVSCDIC-----HKEFTHPSSVLYHKQSIH 264
D C + + L H+ + R+ C + F ++ H + H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62
Query: 265 NNEI-FKCT--KCDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAYKTNISLSAHLMK- 318
E KCT C K + ++ L H H +PY C C A+ + H +
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 319 HTGAKPYVCEI--CNKVLTHRSSLISHYR 345
H+ KPYVC++ C K T SSL H +
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 74.2 bits (183), Expect = 3e-16
Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 20/158 (12%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRR---HKGEKPVTCTFENCTE---TFVESWAMRKHVR 202
E + CS+ F S E H+ H K C + C+ F + + H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 203 TCHN--KPTVNRFPCD--KCEKVYSCASSLTKHMKARLGRQPVSC--DICHKEFTHPSSV 256
H KP C C K YS +L H+++ G +P C + C K F++ S
Sbjct: 61 R-HTGEKP----HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDR 115
Query: 257 LYHKQSIHNNEI-FKCTK--CDKVFQHIQLLNRHQLVH 291
H+ H+NE + C C K + L +H
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 58.8 bits (143), Expect = 9e-11
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 2 HQGIKQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCN--ICSRKFTTYS 49
H G K ++C C K++++ NLK H R HTGEKP+ C CS+ F+ S
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Score = 58.4 bits (142), Expect = 1e-10
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 2 HQGIKQYQCSQC-----PKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYS 49
H K++ C + F + L H R HTGEKP C C + ++
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLE 83
Score = 54.1 bits (131), Expect = 3e-09
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEH-FRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
H G K Y C C KAF+ + +H R H+ EKP+ C + C++++T S +R+
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Score = 52.2 bits (126), Expect = 2e-08
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHF---RIHTGEKPFTCNIC 41
+ C + F+ + L H IH K F C+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG 40
Score = 40.3 bits (95), Expect = 2e-04
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 2 HQGIKQYQC--SQCPKAFNQKGNLKEHFRIHTG 32
H K Y C C K + +L++H + G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.9 bits (81), Expect = 0.012
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 140 KLHLKR-HTGEKPHTCEL--CSKGFLSAESYKCHLRRHKG 176
H R H+ EKP+ C+L C+K + S + H++ G
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 28.7 bits (65), Expect = 1.9
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
+ C++ + L+ H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHIN 24
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 75.8 bits (187), Expect = 7e-17
Identities = 27/166 (16%), Positives = 44/166 (26%), Gaps = 30/166 (18%)
Query: 139 HKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMR 198
+ + C + F + H+ P E
Sbjct: 13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------- 64
Query: 199 KHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDI--CHKEFTHPSSV 256
C + K + L H++ G +P C C K F ++
Sbjct: 65 ----------------CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL 108
Query: 257 LYHKQSIHNNEI-FKCTK--CDKVFQHIQLLNRHQLVHMDTRPYQC 299
H + H E FKC CD+ F + +H VH +
Sbjct: 109 KIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 71.5 bits (176), Expect = 3e-15
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 217 KCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHK---------QSIHNNE 267
+ C + F+ ++ H Q+ H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 268 IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC--PQCPMAYKTNISLSAHLMKHTGAKPY 325
+C + K F+ L H VH +P+ C P C + + +L H HTG KP+
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 326 VCEI--CNKVLTHRSSLISHYR 345
CE C++ + S H
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMH 143
Score = 65.8 bits (161), Expect = 3e-13
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 140 KLHLKRHTGEKPHT---------CELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTET 190
H+ P C K F + H+R H GEKP C F C +
Sbjct: 42 VTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI 101
Query: 191 FVESWAMRKHVRTCHN--KPTVNRFPC--DKCEKVYSCASSLTKHMKARLGRQPVSCD 244
F S ++ H RT H KP F C + C++ ++ +S KHM +
Sbjct: 102 FARSENLKIHKRT-HTGEKP----FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 57.7 bits (140), Expect = 2e-10
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYS 49
H G K + C C K F + NLK H R HTGEKPF C C R+F S
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Score = 56.1 bits (136), Expect = 7e-10
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYS 49
+C + K+F K L H R+HTGEKPF C C + F
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSE 106
Score = 53.8 bits (130), Expect = 4e-09
Identities = 7/57 (12%), Positives = 12/57 (21%), Gaps = 9/57 (15%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFT---------CNICSRKFTTYS 49
+ C + F+ L H + P C + F
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Score = 52.3 bits (126), Expect = 1e-08
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
H G K ++C C + F + K+H +HT +K +
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 39.2 bits (92), Expect = 5e-04
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 13 CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
+ I + C R F+T +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHE 40
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 74.5 bits (184), Expect = 9e-17
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 240 PVSCDI--CHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPY 297
++C C K F S++ H H + C +C K F L RHQLVH +P+
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 298 QCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEI--CNKVLTHRSSLISHYR 345
QC C + + +L H+ HTG +PYVC CNK ++L SH
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 69.9 bits (172), Expect = 5e-15
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 142 HLKRHT---GEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMR 198
+++H G + H C C K F+ + K H H GEKP CTFE C + F + +R
Sbjct: 22 AMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 199 KHVRTCH--NKPTVNRFPC--DKCEKVYSCASSLTKHMK 233
HVR H ++P + C D C K ++ +++L H+
Sbjct: 82 THVRI-HTGDRP----YVCPFDGCNKKFAQSTNLKSHIL 115
Score = 68.3 bits (168), Expect = 1e-14
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 38/154 (24%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARL 236
+ + C + CT+ F ++ AMRKH+ T + C +C K + +S L +H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRV----HVCAECGKAFVESSKLKRHQL--- 55
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK--CDKVFQHIQLLNRHQLVHMD 293
+H E F+CT C K F L H +H
Sbjct: 56 --------------------------VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Query: 294 TRPYQCP--QCPMAYKTNISLSAHLMKHTGAKPY 325
RPY CP C + + +L +H++ H AK
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 62.1 bits (152), Expect = 2e-12
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 2 HQGI---KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
H + + C++C KAF + LK H +HTGEKPF C C ++F+ +R
Sbjct: 26 HLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Score = 60.2 bits (147), Expect = 1e-11
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 23/130 (17%)
Query: 149 EKPHTCEL--CSKGFLSAESYKCHLRRHK---GEKPVTCTFENCTETFVESWAMRKHVRT 203
+ C C+K F +R+H G + C C + FVES +++H
Sbjct: 3 PRTIACPHKGCTKMF----RDNSAMRKHLHTHGPRVHVC--AECGKAFVESSKLKRHQLV 56
Query: 204 CHN--KPTVNRFPC--DKCEKVYSCASSLTKHMKARLGRQPVSCDI--CHKEFTHPSSVL 257
H KP F C + C K +S +L H++ G +P C C+K+F +++
Sbjct: 57 -HTGEKP----FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK 111
Query: 258 YHKQSIHNNE 267
H H
Sbjct: 112 SH-ILTHAKA 120
Score = 59.1 bits (144), Expect = 3e-11
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYS 49
H G K +QC+ C K F+ NL+ H RIHTG++P+ C C++KF +
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQST 108
Score = 57.9 bits (141), Expect = 8e-11
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 140 KLHLKRHTGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAM 197
K H HTGEKP C C K F + + H+R H G++P C F+ C + F +S +
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110
Query: 198 RKHVRT 203
+ H+ T
Sbjct: 111 KSHILT 116
Score = 52.5 bits (127), Expect = 6e-09
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 6 KQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+ C C K F +++H H G + C C + F S+++R
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKR 52
Score = 51.0 bits (123), Expect = 2e-08
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPF 36
H G + Y C C K F Q NLK H H K
Sbjct: 87 HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 44.0 bits (105), Expect = 6e-06
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 292 MDTRPYQCPQ--CPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
M+ R CP C ++ N ++ HL H G + +VC C K S L H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL 55
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 71.7 bits (177), Expect = 3e-16
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
F C C K F+ L+ H L+H DTRPY C C + + H HTG KP+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 329 ICNKVLTHRSSLISHYR 345
+C K + S+LI+H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 64.0 bits (157), Expect = 2e-13
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
H + Y C C K F+QK ++K+H IHTGEKP C +C + F+ S
Sbjct: 24 HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS 71
Score = 59.0 bits (144), Expect = 1e-11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
+ C C K+F + L H IH+ +P+ C C ++F S
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKS 43
Score = 51.3 bits (124), Expect = 6e-09
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 243 CDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
C IC K F S++ H IH++ + C C K F + +H +H +P++C
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 302 CPMAYKTNISLSAHLMKHTG 321
C A+ + +L H KHTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 45.5 bits (109), Expect = 8e-07
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTG 32
H G K ++C C KAF+Q NL H R HTG
Sbjct: 52 HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 44.7 bits (107), Expect = 1e-06
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
HL H+ +P+ C+ C K F K H H GEKP C + C + F +S + H
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHS 77
Query: 202 RT 203
R
Sbjct: 78 RK 79
Score = 39.3 bits (93), Expect = 1e-04
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 34/111 (30%)
Query: 154 CELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRF 213
C++C K F + + HL H +P +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRP---------------------------------Y 30
Query: 214 PCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIH 264
PC C K + S + KH G +P C +C K F+ S+++ H H
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 70.9 bits (175), Expect = 1e-15
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 254 SSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISL 312
SS + + F C C + F L H+ H D RPY C C A++ L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 313 SAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
H H+ KP+ C+ C K +L H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 67.8 bits (167), Expect = 1e-14
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 226 SSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLL 284
S + ++ C C + FT ++L H + H +E + C C K F+ L
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHL 61
Query: 285 NRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
H+ +H +P++C +C + + +L+ H H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 64.8 bits (159), Expect = 2e-13
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
+ K++ C C + F + NL H R HT E+P+TC+IC + F
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Score = 62.8 bits (154), Expect = 9e-13
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
H + Y C C KAF ++ +L++H IH+ EKPF C C + F
Sbjct: 40 HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR 87
Score = 60.1 bits (147), Expect = 9e-12
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
H K ++C +C K F Q L H +H T
Sbjct: 68 HSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 59.8 bits (146), Expect = 1e-11
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKC 271
F C C + ++ + +L H + +P +CDICHK F + H + IH+ E FKC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 272 TKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
+C K F + L H+ +HM T
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 59.0 bits (144), Expect = 2e-11
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
+K C+ C + F + + H R H E+P TC + C + F +R H
Sbjct: 8 GRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHR 65
Query: 202 RTCHN--KPTVNRFPCDKCEKVYSCASSLTKHMK 233
H+ KP F C +C K + + +L H
Sbjct: 66 YI-HSKEKP----FKCQECGKGFCQSRTLAVHKT 94
Score = 47.4 bits (114), Expect = 2e-07
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 129 SKSSHKIYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCT 188
+KS + + +H + HT E+P+TC++C K F + + H H EKP C + C
Sbjct: 28 TKSYNLL-----IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECG 80
Query: 189 ETFVESWAMRKHVRT 203
+ F +S + H
Sbjct: 81 KGFCQSRTLAVHKTL 95
Score = 39.7 bits (94), Expect = 1e-04
Identities = 7/31 (22%), Positives = 8/31 (25%)
Query: 20 KGNLKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
+K F C C R FT
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYN 32
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 70.5 bits (174), Expect = 1e-15
Identities = 26/77 (33%), Positives = 35/77 (45%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
KC C K F L H H +PY+C C A + SL+ HL H+ +P+ C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 329 ICNKVLTHRSSLISHYR 345
IC + S L H R
Sbjct: 69 ICPYASRNSSQLTVHLR 85
Score = 67.4 bits (166), Expect = 2e-14
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTR 295
P C++C K F+ + H H +KC CD LN+H +H D R
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
P++C CP A + + L+ HL HTG
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 65.9 bits (162), Expect = 5e-14
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
H G+K Y+C C A +L +H RIH+ E+PF C IC SQ+
Sbjct: 31 HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82
Score = 64.4 bits (158), Expect = 2e-13
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCH 205
PH CE+C K F + K H+R H G KP C + C +S ++ KH+R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRI-H 59
Query: 206 N--KPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSC 243
+ +P F C C +S LT H+++ G S
Sbjct: 60 SDERP----FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 64.4 bits (158), Expect = 2e-13
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
++C C K F++K LK H R HTG KP+ C C S
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSS 50
Score = 59.0 bits (144), Expect = 2e-11
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
H + ++C CP A L H R HTG+ +
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 51.7 bits (125), Expect = 7e-09
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
P++C C + L H+ HTG KPY C+ C+ SSL H R
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Score = 51.3 bits (124), Expect = 9e-09
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H++ HTG KP+ C+ C + S HLR H E+P C + C S + H+
Sbjct: 27 HMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLTVHL 84
Query: 202 RT 203
R+
Sbjct: 85 RS 86
Score = 38.2 bits (90), Expect = 4e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+ P+ CE+C K + + L +H R
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR 29
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 69.9 bits (172), Expect = 2e-15
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 145 RHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTC 204
+ T C K + + K HLR H GEKP C ++ C F S + +H R
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK- 59
Query: 205 HNKPTVNRFPCDKCEKVYSCASSLTKHMK 233
H F C KC++ +S + L HMK
Sbjct: 60 HTG--HRPFQCQKCDRAFSRSDHLALHMK 86
Score = 59.1 bits (144), Expect = 2e-11
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
+ C K + + +LK H R HTGEKP+ C+ C KF ++ R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTR 55
Score = 58.3 bits (142), Expect = 2e-11
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 1 WHQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G K Y C C F + L H+R HTG +PF C C R F+
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76
Score = 56.0 bits (136), Expect = 2e-10
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 268 IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC--PQCPMAYKTNISLSAHLMKHTGAKPY 325
C K + L H H +PY C C + + L+ H KHTG +P+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 326 VCEICNKVLTHRSSLISHYR 345
C+ C++ + L H +
Sbjct: 67 QCQKCDRAFSRSDHLALHMK 86
Score = 52.9 bits (128), Expect = 2e-09
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 129 SKSSHKIYLGHKLHLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFEN 186
+KSSH K HL+ HTGEKP+ C + C F ++ H R+H G +P C
Sbjct: 18 TKSSHL-----KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK-- 70
Query: 187 CTETFVESWAMRKHVRT 203
C F S + H++
Sbjct: 71 CDRAFSRSDHLALHMKR 87
Score = 47.1 bits (113), Expect = 2e-07
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 291 HMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC--EICNKVLTHRSSLISHYR 345
T C Y + L AHL HTG KPY C + C L HYR
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Score = 39.8 bits (94), Expect = 1e-04
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H ++HTG +P C+ C + F ++ H++RH
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.9 bits (89), Expect = 4e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIH 30
H G + +QC +C +AF++ +L H + H
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 34.0 bits (79), Expect = 0.010
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 318 KHTGAKPYVCEICNKVLTHRSSLISHYR 345
K T C K T S L +H R
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLR 28
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 69.8 bits (172), Expect = 2e-15
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
H G K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Score = 65.2 bits (160), Expect = 1e-13
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 269 FKC--TKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYV 326
+ C CD+ F L RH +H +P+QC C + + L+ H+ HTG KP+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 327 CEICNKVLTHRSSLISHYR 345
C+IC + H +
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 62.5 bits (153), Expect = 9e-13
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ Y C C + F+Q G+L H RIHTG+KPF C IC R F+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS 45
Score = 58.2 bits (142), Expect = 3e-11
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
H++ HTG+KP C +C + F ++ H+R H GEKP C + C F S ++
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 200 HVRT 203
H +
Sbjct: 81 HTKI 84
Score = 57.9 bits (141), Expect = 3e-11
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 149 EKPHTCEL--CSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHN 206
E+P+ C + C + F + S H+R H G+KP C C F S + H+RT H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRT-HT 58
Query: 207 --KPTVNRFPCDKCEKVYSCASSLTKHMK 233
KP F CD C + ++ + +H K
Sbjct: 59 GEKP----FACDICGRKFARSDERKRHTK 83
Score = 56.3 bits (137), Expect = 1e-10
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRTCHN--KPTVNRFPCDKCEKVYSCASSLTKHMKA 234
E+P C E+C F +S ++ +H+R H KP F C C + +S + LT H++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI-HTGQKP----FQCRICMRNFSRSDHLTTHIRT 56
Query: 235 RLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
G +P +CDIC ++F H IH +
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRH-TKIHLRQ 88
Score = 50.9 bits (123), Expect = 1e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
H G K + C C + F + K H +IH +K
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 49.8 bits (120), Expect = 2e-08
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 246 CHKEFTHPSSVLYHKQSIHNNE-IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPM 304
C + F+ S+ H IH + F+C C + F L H H +P+ C C
Sbjct: 12 CDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 305 AYKTNISLSAHLMKHTGAK 323
+ + H H K
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
H++ HTGEKP C++C + F ++ K H + H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 69.1 bits (170), Expect = 4e-15
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTG--AKPYV 326
C C K+F+ + LNRH+L H +PY CP C + +K +S H+ H G KPY+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 327 CEICNKVLTHRSSLISHYR 345
C+ C K + L H +
Sbjct: 68 CQSCGKGFSRPDHLNGHIK 86
Score = 65.6 bits (161), Expect = 8e-14
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCH 205
+G CE+C K F H H GEKP +C C F M HVR+ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRS-H 58
Query: 206 ----NKPTVNRFPCDKCEKVYSCASSLTKHMK 233
KP + C C K +S L H+K
Sbjct: 59 DGSVGKP----YICQSCGKGFSRPDHLNGHIK 86
Score = 65.2 bits (160), Expect = 9e-14
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
G C C K F +L H H+GEKP++C +C +F
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKD 49
Score = 59.8 bits (146), Expect = 1e-11
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGE--KPFTCNICSRKFTTYS 49
H G K Y C C F +K + H R H G KP+ C C + F+
Sbjct: 30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Score = 53.6 bits (130), Expect = 1e-09
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI---F 269
C+ C K++ L +H + G +P SC +C F + YH H+ + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPY 66
Query: 270 KCTKCDKVFQHIQLLNRH-QLVH 291
C C K F LN H + VH
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 51.3 bits (124), Expect = 7e-09
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 296 PYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
C C ++ L+ H + H+G KPY C +C + + H R
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 44.8 bits (107), Expect = 2e-06
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHF-RIHTGEK 34
K Y C C K F++ +L H ++H+G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 38.2 bits (90), Expect = 4e-04
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G+ CEIC K+ L H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL 28
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 67.9 bits (167), Expect = 8e-15
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+K +QC C + F++ +L H R HTGEKPF C+IC RKF + +R
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 49
Score = 61.0 bits (149), Expect = 3e-12
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPT 209
KP C +C + F ++ H+R H GEKP C + C F S ++H H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHILP- 58
Query: 210 VNRFPCDKCEKVYSCASSLTKHMK 233
DK E++ S L +
Sbjct: 59 ---ILEDKVEELLSKNYHLENEVA 79
Score = 60.6 bits (148), Expect = 4e-12
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
H G K + C C + F + K H I P + +
Sbjct: 26 HTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNY 72
Score = 59.8 bits (146), Expect = 8e-12
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
F+C C + F L H H +P+ C C + + H P + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62
Query: 329 ICNKVLTHRSSLISH 343
++L+ L +
Sbjct: 63 KVEELLSKNYHLENE 77
Score = 53.3 bits (129), Expect = 2e-09
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCT 272
F C C + +S + LT H++ G +P +CDIC ++F H + I +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQHILPILED 62
Query: 273 KCDKVFQHIQLLNRHQ 288
K +++ L
Sbjct: 63 KVEELLSKNYHLENEV 78
Score = 51.0 bits (123), Expect = 9e-09
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+P+QC C + + L+ H+ HTG KP+ C+IC + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 42.1 bits (100), Expect = 1e-05
Identities = 3/32 (9%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 6 KQYQCSQCPKAFNQKGNLKEH---FRIHTGEK 34
+ + ++ +L+ + GE+
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 35.5 bits (83), Expect = 0.003
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 142 HLKRHT---GEKPHTCELCSKGF---LSAESYKCHLRRHKGEK 178
KRH P + + E+ L++ GE+
Sbjct: 46 ERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 66.3 bits (163), Expect = 2e-14
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
K Y+C +C +F KGNL H +HTGEKP+ CNIC +F +
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Score = 59.4 bits (145), Expect = 8e-12
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 284 LNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+ H + +PY+C +C +++ +L++H HTG KPY C IC ++L +H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 344 YR 345
R
Sbjct: 65 TR 66
Score = 55.2 bits (134), Expect = 2e-10
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPF 36
H G K Y+C+ C FN+ NLK H RIH+GEKP+
Sbjct: 40 HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 51.7 bits (125), Expect = 4e-09
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 254 SSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISL 312
+H + +++ +KC +C F++ L H+ VH +PY+C C + +L
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 313 SAHLMKHTGAKPY 325
H H+G KPY
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 48.6 bits (117), Expect = 5e-08
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 131 SSHKIYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHK----GEKPVTCTFEN 186
H H H +KP+ C+ C F YK +L HK GEKP C
Sbjct: 2 GHH-----HHHHSHMTHSDKPYKCDRCQASF----RYKGNLASHKTVHTGEKPYRC--NI 50
Query: 187 CTETFVESWAMRKHVRT 203
C F ++ H R
Sbjct: 51 CGAQFNRPANLKTHTRI 67
Score = 45.1 bits (108), Expect = 9e-07
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 226 SSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLL 284
H +P CD C F + ++ H +++H E ++C C F L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANL 61
Query: 285 NRHQLVHMDTRPY 297
H +H +PY
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 40.1 bits (95), Expect = 4e-05
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
CD+C+ + +L H G +P C+IC +F P+++ H IH+ E
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGE 71
Score = 39.7 bits (94), Expect = 6e-05
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 312 LSAHLMKH----TGAKPYVCEICNKVLTHRSSLISHYR 345
+ H H KPY C+ C ++ +L SH
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT 38
Score = 39.4 bits (93), Expect = 8e-05
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 22 NLKEHFRIHTGEKPFTCNICSRKFTTYS 49
+ H + +KP+ C+ C F
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKG 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 67.1 bits (165), Expect = 3e-14
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 246 CHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPM 304
C K FTH S H S+H + C C K F+ L H +H +PY+C C
Sbjct: 15 CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 305 AYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLIS 342
+ S H+ + K Y + T S S
Sbjct: 74 RFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 66.7 bits (164), Expect = 4e-14
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
H G++ Y C C K F K +L H +IHTG KP+ CNIC+++F
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDS 80
Score = 63.2 bits (155), Expect = 7e-13
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+ C +C K F H +RH +H+ RPY C C +K L H+ HTG KPY C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 329 ICNKVLTHRSSLISH 343
IC K R S H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 60.1 bits (147), Expect = 8e-12
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
H GIK Y+C+ C K F + + H + + K + + T S
Sbjct: 60 HTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 60.1 bits (147), Expect = 1e-11
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 38/136 (27%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCH 205
+G+K + C+ C K F H+ H G +P
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-------------------------- 37
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHN 265
+ C C K + L HMK G +P C+IC K F S H + + +
Sbjct: 38 -------YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--H-RHVTS 87
Query: 266 NEI-FKCTKCDKVFQH 280
++ K ++
Sbjct: 88 CTKSYEAAKAEQNTTE 103
Score = 59.8 bits (146), Expect = 1e-11
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
G K Y C QC K+F K H +H G +P+ C +C +KF
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKH 51
Score = 55.9 bits (136), Expect = 3e-10
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H+ H G +P+ C +C K F H++ H G KP C C + F+ + +HV
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWRDSFHRHV 85
Query: 202 RTCHNKPTVNRFPCDKCEKVYSCASSLT 229
+C K + K E+ + AS +
Sbjct: 86 TSCT-KS----YEAAKAEQNTTEASGPS 108
Score = 47.1 bits (113), Expect = 4e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ Y C QC ++ H+ H G +PY C +C K + L+ H +
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 37.0 bits (87), Expect = 0.001
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G K Y C+ C K TH+S H
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMS 30
Score = 31.3 bits (72), Expect = 0.12
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNL 23
K Y+ ++ + +
Sbjct: 86 TSCTKSYEAAKAEQNTTEASGP 107
Score = 29.3 bits (67), Expect = 0.53
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 28 RIHTGEKPFTCNICSRKFTTYSQVRR 53
+G+K + C C + FT SQ R
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDR 27
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 65.2 bits (160), Expect = 4e-14
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+ + C C +AF ++ +LK H+R HT EKP+ C +C+R FT + R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIR 48
Score = 49.4 bits (119), Expect = 2e-08
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
R + C C A+ L H HT KPY C +CN+ T R LI H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 43.2 bits (103), Expect = 3e-06
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHF-RIHTGEK 34
H K Y C C +AF ++ L H +IH+G
Sbjct: 25 HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 41.3 bits (98), Expect = 1e-05
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK-HTG 321
F C C + F + L RH H + +PY C C A+ L H K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 41.3 bits (98), Expect = 1e-05
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI 268
F C+ C + ++ L +H ++ +P C +C++ FT ++ H Q IH+ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 37.9 bits (89), Expect = 2e-04
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
Query: 142 HLKRH----TGEKPHTCELCSKGFLSAESYKCHLRRHK 175
HLKRH T EKP+ C LC++ F + + L RH
Sbjct: 17 HLKRHYRSHTNEKPYPCGLCNRAF----TRRDLLIRHA 50
Score = 36.3 bits (85), Expect = 8e-04
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCH 205
+ CE+C++ F E K H R H EKP C C F + +H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIH 54
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 65.6 bits (161), Expect = 5e-14
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGE--KPFTCNICSRKFTTYSQVRR 53
H G K Y+C C F Q G +K H E F C C S +
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Score = 57.9 bits (141), Expect = 3e-11
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 284 LNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTG--AKPYVCEICNKVLTHRSSLI 341
H +PY+C C + + ++ H+++ + C C+ V+ +S L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 342 SHYR 345
H R
Sbjct: 63 VHLR 66
Score = 57.9 bits (141), Expect = 3e-11
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGE--KPVTCTFENCTETFVESWAM 197
+ H+GEKP+ C +C F + + K H+ + E C +C +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDL 61
Query: 198 RKHVRTCH 205
H+R H
Sbjct: 62 GVHLRKQH 69
Score = 51.4 bits (124), Expect = 5e-09
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFR-IHTGEKPFT 37
++ C C +K +L H R H+ P +
Sbjct: 44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHM--DTRPYQCPQCPMAYKTNISLSAHLMK-HTGAKPY 325
++C C F + H L + + CP C L HL K H+ + P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 49.4 bits (119), Expect = 3e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 21 GNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
G+ R H+GEKP+ C IC +FT ++
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKM 33
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 311 SLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
S + H+G KPY C IC+ T ++ H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL 36
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 198 RKHVRTCHN--KPTVNRFPCDKCEKVYSCASSLTKHMKARLG--RQPVSCDICHKEFTHP 253
RT H+ KP + C C ++ + ++ H+ + C C
Sbjct: 4 GSSGRT-HSGEKP----YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Query: 254 SSVLYHKQSIHNNE 267
S + H + H+
Sbjct: 59 SDLGVHLRKQHSYS 72
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 64.4 bits (158), Expect = 1e-13
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+CS+C + + K L+ H RIH ++PF CN CS S + +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK 55
Score = 53.7 bits (130), Expect = 7e-10
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
H + ++C+ C Q NL +H + G+
Sbjct: 32 HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 51.7 bits (125), Expect = 4e-09
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 290 VHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
P +C +C + + +L H H +P+ C C+ S+L H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
+ P C CS S + + H R H ++P C C+ + + KH++
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKK 59
Score = 49.8 bits (120), Expect = 1e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPY 325
KC++C L H+ +H RP++C C K +LS H+ K G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 43.3 bits (103), Expect = 3e-06
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
++H + H ++P C CS + H+++ G+ +
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 39.8 bits (94), Expect = 6e-05
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 172 RRHKGEKPVTCTFENCTETFVESWAMRKHVRTCH--NKPTVNRFPCDKCEKVYSCASSLT 229
P C C+ + A+R H R H ++P F C+ C S+L+
Sbjct: 2 SSGSSGHPEKC--SECSYSCSSKAALRIHERI-HCTDRP----FKCNYCSFDTKQPSNLS 54
Query: 230 KHMK 233
KHMK
Sbjct: 55 KHMK 58
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIH 264
C +C S ++L H + +P C+ C + PS++ H
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 32.1 bits (74), Expect = 0.028
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 28 RIHTGEKPFTCNICSRKFTTYSQVRR 53
+ P C+ CS ++ + +R
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRI 27
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 63.6 bits (156), Expect = 2e-13
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
H G K Y C +C KAF++ L +H R+HTGEKP+ C C + F+ S
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSG 57
Score = 58.6 bits (143), Expect = 1e-11
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 284 LNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+ +H +PY C +C A+ + L H HTG KPY C C K + S LI+H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 344 YR 345
R
Sbjct: 62 QR 63
Score = 54.4 bits (132), Expect = 4e-10
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPF 36
H G K Y+C +C KAF+Q L H RIHT
Sbjct: 37 HTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 52.9 bits (128), Expect = 1e-09
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
IH+ E + C +C K F +L +HQ VH +PY+C +C A+ N L H H
Sbjct: 6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Query: 320 TGAKPY 325
T
Sbjct: 66 TSGPSS 71
Score = 45.2 bits (108), Expect = 8e-07
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
H+GEKP+ C C K F + H R H GEKP C C + F ++ + H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQ 62
Query: 202 RT 203
R
Sbjct: 63 RI 64
Score = 43.6 bits (104), Expect = 2e-06
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 228 LTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNR 286
+ G +P C C K F+ S ++ H Q +H E +KC +C K F L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 287 HQLVHMDTRPY 297
HQ +H
Sbjct: 61 HQRIHTSGPSS 71
Score = 38.6 bits (91), Expect = 1e-04
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
C +C K +S +S L +H + G +P C C K F+ S ++ H Q IH +
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTSG 68
Score = 38.2 bits (90), Expect = 2e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 23 LKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
IH+GEKP+ C C + F+ S
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSI 29
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 63.2 bits (154), Expect = 3e-13
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHT---GEKPFTCNICSRKFTTYSQVRR 53
G QC C QK +L H R H F C C ++F V
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA 56
Score = 57.0 bits (138), Expect = 6e-11
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRH---KGEKPVTCTFENCTETFVESWAMRKHVR 202
+G CE+C S H R+H C F C + F + ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRS 59
Query: 203 TCHNKPTVNRFPCDKCEKV 221
H + P +
Sbjct: 60 KSHPALLL--APQESSGPS 76
Score = 51.3 bits (123), Expect = 6e-09
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHT---GAKPYVCEICNKVLTHRSSLISHYR 345
QC C + SL+ H KH A + CE C K S+ +H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Score = 48.9 bits (117), Expect = 4e-08
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI----FKCTKCDKVFQHIQLLNRHQLVHM 292
G + C+IC +S+ +H Q H + F C C K F+ + H+
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 293 DTRPYQCPQCP 303
+
Sbjct: 63 PALLLAPQESS 73
Score = 47.0 bits (112), Expect = 2e-07
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDT---RPYQCPQCPMAYKTNISLSAHLMKHTGAKPY 325
+C C + LN HQ H +T + C C ++ S++AH K A
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 326 VCE 328
+
Sbjct: 68 APQ 70
Score = 45.5 bits (108), Expect = 6e-07
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 3 QGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRK 44
++ C C K F + ++ H S
Sbjct: 34 VAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGP 75
Score = 45.5 bits (108), Expect = 8e-07
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 213 FPCDKCEKVYSCASSLTKHMK---ARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIF 269
C+ C +SL H + + C+ C K F P SV H+ H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 270 KCTKCDK 276
+
Sbjct: 68 APQESSG 74
Score = 38.2 bits (89), Expect = 2e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G+ CEIC ++SL H R
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR 28
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 63.0 bits (154), Expect = 4e-13
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRI--HTGEKPFTCNICSRKFTTYSQVRRSSN 56
+G Y+C C + + N H+ K + C C ++FT R N
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT------RKDN 55
Score = 52.2 bits (126), Expect = 2e-09
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLR--RHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
GE + C++CS+ + ++ H + K C F C + F M HV+
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKI 62
Query: 204 CH 205
H
Sbjct: 63 IH 64
Score = 50.2 bits (121), Expect = 1e-08
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 288 QLVHMDTRPYQCPQCPMAYKTNISLSAHLM--KHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ Y+C C Y + H + K Y C C K T + ++ +H +
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTG 32
+ +K Y C C K F +K N+ H +I
Sbjct: 35 KRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI--FKCTKCDKVFQHIQLLNRHQLVH 291
G C +C + +TH S+ H + H + + C C K F + H +
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 28 RIHTGEKPFTCNICSRKFTTYSQVRR 53
GE + C +CSR +T S R
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCR 28
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARL--GRQPVSCDICHKEFTHPSSVLYHKQSIH 264
+ C C +VY+ S+ +H + C C KEFT ++ H + IH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 139 HKLHLKRHT------GEKPHTCELCSKGFLSAESYKCHLRRHK 175
H + RH K + C C K F + K ++ H
Sbjct: 22 HISNFCRHYVTSHKRNVKVYPCPFCFKEF----TRKDNMTAHV 60
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 63.8 bits (156), Expect = 4e-13
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
+ H + P C+K + + K HLR H GEKP CT+E C F S + +H
Sbjct: 12 KRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 202 RTCHNKPTVNRFPCDKCEKVYSCASSLTKHMK 233
R H F C C + +S + L HMK
Sbjct: 68 RK-HTG--AKPFQCGVCNRSFSRSDHLALHMK 96
Score = 59.2 bits (144), Expect = 2e-11
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1 WHQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G K Y+C+ C F + L H+R HTG KPF C +C+R F+
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86
Score = 56.1 bits (136), Expect = 2e-10
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 268 IFKCTK--CDKVFQHIQLLNRHQLVHMDTRPYQC--PQCPMAYKTNISLSAHLMKHTGAK 323
I C C KV+ L H H +PY+C C + + L+ H KHTGAK
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 324 PYVCEICNKVLTHRSSLISHYR 345
P+ C +CN+ + L H +
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMK 96
Score = 50.3 bits (121), Expect = 2e-08
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 6 KQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFT 46
+ + C C K + + +LK H R HTGEKP+ C C +F
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Score = 43.0 bits (102), Expect = 9e-06
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 190 TFVESWAMRKHVRTCHNKPTVNRFPCDK--CEKVYSCASSLTKHMKARLGRQPVSCDI-- 245
+ S + R CD C KVY+ +S L H++ G +P C
Sbjct: 2 SSGSSGPDLEKRRI---------HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG 52
Query: 246 CHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMD 293
C F + H + H F+C C++ F L H H +
Sbjct: 53 CDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 42.2 bits (100), Expect = 2e-05
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H ++HTG KP C +C++ F ++ H++RH
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 39.9 bits (94), Expect = 9e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHT 31
H G K +QC C ++F++ +L H + H
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 61.8 bits (151), Expect = 6e-13
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C+ C K+F KGNL H RIHTGEK +
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TG+KP C C K F + + H R H GEK +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 39.1 bits (92), Expect = 6e-05
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P++C C +++ +L H HTG K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KP+ C C K + +L++H R
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33
Score = 36.4 bits (85), Expect = 5e-04
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TG+KPF C C + F
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGN 27
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + F+CT C K F+ L HQ +H +
Sbjct: 4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 61.4 bits (150), Expect = 7e-13
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHF-RIHTGEKPFTCNICSRKFTT 47
K Y C C K F++ +L H ++HT E+P C + ++
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRR-HKGEKPVTCTFENCTETF 191
+ KP+ C+ C KGF + H+++ H E+P C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGP 51
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK-HTGAKPYVCEICNK 332
+PY C C + L+ H+ + HT +P+ C++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 36.8 bits (86), Expect = 4e-04
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 142 HLKR-HTGEKPHTCELCSKGFLSA 164
H+K+ HT E+PH C++ G S
Sbjct: 31 HIKQVHTSERPHKCQVWVSGPSSG 54
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 240 PVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVF 278
P C C K F+ P + H + +H +E KC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 35.2 bits (82), Expect = 0.002
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+ KPY+C+ C K + L H +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIK 33
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRH-QLVHMDTRPYQCPQC 302
S + + C C K F LN H + VH RP++C
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 29.9 bits (68), Expect = 0.14
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 26 HFRIHTGEKPFTCNICSRKFT 46
+ KP+ C C + F+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFS 23
Score = 27.9 bits (63), Expect = 0.66
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARL--GRQPVSCDICHKEFT 251
+ C C K +S L H+K ++ +P C + +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK-QVHTSERPHKCQVWVSGPS 52
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 61.7 bits (151), Expect = 1e-12
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
+ ++Y+C +C K+F+ +L +H R HTGEKP+ C+ C + F
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57
Score = 57.8 bits (141), Expect = 3e-11
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 284 LNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
R + + R Y+C +C ++ + LS H HTG KPY C+ C K RS LI H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 344 YR 345
+R
Sbjct: 66 HR 67
Score = 54.0 bits (131), Expect = 6e-10
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPF 36
H G K Y+C +C KAF Q+ +L H R+HTG P
Sbjct: 41 HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 53.2 bits (129), Expect = 1e-09
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 254 SSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISL 312
S + +KC +C K F H L++H+ H +PY+C +C A+ L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 313 SAHLMKHTGAKPY 325
H HTG+ P
Sbjct: 63 IGHHRVHTGSGPS 75
Score = 45.5 bits (109), Expect = 6e-07
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 226 SSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTKCDKVFQHIQLL 284
S + + R+ CD C K F+H S + H + H E +KC +C K F L
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 285 NRHQLVHMDTRPY 297
H VH + P
Sbjct: 63 IGHHRVHTGSGPS 75
Score = 44.7 bits (107), Expect = 1e-06
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 138 GHKLHLKR----HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVE 193
G R + + C+ C K F + H R H GEKP C + C + F++
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQ 58
Query: 194 SWAMRKHVRT 203
+ H R
Sbjct: 59 RSHLIGHHRV 68
Score = 41.3 bits (98), Expect = 2e-05
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 311 SLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
S + + Y C+ C K +H S L H R
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 39
Score = 41.3 bits (98), Expect = 2e-05
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 19 QKGNLKEHFRIHTGEKPFTCNICSRKFTTYS 49
G+ + + C+ C + F+ S
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSS 32
Score = 37.4 bits (88), Expect = 4e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
CD+C K +S +S L+KH + G +P CD C K F S ++ H +H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVHTGS 72
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 62.2 bits (152), Expect = 1e-12
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGE----KPFTCNICSRKFTTYSQVRR 53
H G K Y CS C K F QK L HF+ + F C+ C + FT + + R
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Score = 61.8 bits (151), Expect = 1e-12
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
+ + CS+C K F ++ + H G
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 57.9 bits (141), Expect = 4e-11
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 261 QSIHNNE-IFKCTKCDKVFQHIQLLNRHQLVH----MDTRPYQCPQCPMAYKTNISLSAH 315
H E + C+ CDK F+ QLL+ H + + C +C + +++ H
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Query: 316 LMKHTGAKPYVCEICNK 332
G E
Sbjct: 67 ADNCAGPDGVEGENSGP 83
Score = 54.5 bits (132), Expect = 6e-10
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 284 LNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTG----AKPYVCEICNKVLTHRSS 339
H +PY C C ++ L H ++ +VC C K T R++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 340 LISHYR 345
+ H
Sbjct: 63 MARHAD 68
Score = 54.1 bits (131), Expect = 6e-10
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 227 SLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-----FKCTKCDKVFQHI 281
S + G +P +C C K F + H +++ F C+KC K F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 282 QLLNRHQLVHMDTRPYQCPQC 302
+ RH +
Sbjct: 61 NTMARHADNCAGPDGVEGENS 81
Score = 51.8 bits (125), Expect = 4e-09
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 29/109 (26%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
+ HTGEKP+ C C K F + H +R+ V
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFV--------------------- 44
Query: 202 RTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEF 250
F C KC K ++ +++ +H G V +
Sbjct: 45 ----PAA----FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 42.5 bits (101), Expect = 1e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 21 GNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
G+ R HTGEKP+ C+ C + F +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDM 33
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 311 SLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
S + HTG KPY C C+K + L H++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C K +N K NL H ++HTGE+P +
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ CE C KG+ S + H + H GE+P +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C Y + +L H HTG +P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY CE C K + +L H +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYS 49
TGEKP+ C C + + +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKF 26
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC KC K + L+ HQ VH RP
Sbjct: 4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 24.4 bits (54), Expect = 9.2
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK 273
+ G +P C+ C K + ++ H Q +H E +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C C KAF QK +L +H + HTGEKP +
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C C A+ L+ H HTG KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C++CSK F H + H GEKP +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 9e-04
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C++C+K T ++ L H +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C +CS+ FT +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAH 27
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C C K F L +HQ H +P
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + Y+CS+C KAF QK L H RIH GEKP +
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGE+ + C C K F+ + H R H+GEKP +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
R Y+C +C A+ +LS H H G KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG + Y C C K +S+L H R
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR 33
Score = 36.0 bits (84), Expect = 7e-04
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 25 EHFRIHTGEKPFTCNICSRKFTTYSQ 50
TGE+ + C+ C + F S
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKST 27
Score = 31.7 bits (73), Expect = 0.024
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C++C K F L+ HQ +H +P
Sbjct: 4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C KAF QK NL +H RIHTGEKP +
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F + H R H GEKP +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C A+ +L+ H HTG KP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K +++L H R
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
Score = 35.9 bits (84), Expect = 8e-04
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C C + F +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKAN 27
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C +C K F L +HQ +H +P
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C++C K F+QK L H R HTGEKP +
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP+ C C K F H R H GEKP +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C +C + LSAH HTG KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ +G KPY C C K + +S L +H R
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
Score = 36.0 bits (84), Expect = 7e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+GEKP+ CN C + F+ S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSI 27
Score = 32.1 bits (74), Expect = 0.018
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E + C +C K F +L+ HQ H +P
Sbjct: 4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + CS+C K F K NL H +IHTGE+P +
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGE P C C K F + H + H GE+P +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG P++C C KV TH+++LI H +
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
Score = 38.6 bits (91), Expect = 8e-05
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
P+ C +C + +L H HTG +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGE PF C+ C + FT +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTN 27
Score = 35.2 bits (82), Expect = 0.001
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E F C++C KVF H L HQ +H RP
Sbjct: 4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G+ Y+CSQC K+F+ K L H R+HT EKP +
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
G P+ C C K F H R H EKP +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
G PY C C K + + L+ H R
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQR 33
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
PY+C QC ++ + L H HT KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S +KC++C+K F L HQ +H +P
Sbjct: 4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.009
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
G P+ C+ C + F+ +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLR 27
Score = 24.4 bits (54), Expect = 9.9
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK 273
G P C C K F+ +L H Q +H E +
Sbjct: 9 GVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGPSS 45
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 4e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+CS C KAF +K L H + HTGE+ +
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H + H GE+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C C A+ L H HTG +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C C K T +S L H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVR 52
TGEKP+ C+ C + FT S +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLH 29
Score = 32.5 bits (75), Expect = 0.013
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC+ C K F L+ HQ H R
Sbjct: 4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 24.4 bits (54), Expect = 8.9
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 141 LHLKRHTGEKPHTC 154
+H + HTGE+
Sbjct: 30 IHQQSHTGERHSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 4e-12
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+CS C KAF+ + +L H RIH+G+KP +
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C +C K F +S H R H G+KP +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C C A+ SLS H H+G KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C +C K +HR SL H R
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
Score = 35.9 bits (84), Expect = 9e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C++C + F+
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQS 27
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C+ C K F H Q L+ HQ +H +P
Sbjct: 4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 25.2 bits (56), Expect = 5.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G +P C +C K F+H S+ H Q IH+ +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGK 38
Score = 24.8 bits (55), Expect = 7.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C C K +S SL+ H + G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 59.0 bits (144), Expect = 4e-12
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFT 37
G K Y C C F LK H RIHTG P +
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 51.3 bits (124), Expect = 3e-09
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
GEKP+ CE+C F ++ K HLR H G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
G KPY CEIC H +L SH R
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32
Score = 36.7 bits (86), Expect = 4e-04
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 26 HFRIHTGEKPFTCNICSRKFT 46
GEKP+ C IC +F
Sbjct: 2 SSGSSGGEKPYPCEICGTRFR 22
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPY 325
+PY C C ++ +L +HL HTG+ P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 30.2 bits (69), Expect = 0.070
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPY 297
+ C C F+H+Q L H +H + P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 28.6 bits (65), Expect = 0.25
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
GEKP C E C F ++ H+R
Sbjct: 2 SSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRI 33
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 132 SHKIYLGHKLHLKRHTGEKPHT 153
H L K HL+ HTG P +
Sbjct: 22 RHLQTL--KSHLRIHTGSGPSS 41
Score = 25.2 bits (56), Expect = 4.8
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 213 FPCDKCEKVYSCASSLTKHM 232
+PC+ C + +L H+
Sbjct: 12 YPCEICGTRFRHLQTLKSHL 31
Score = 24.8 bits (55), Expect = 6.9
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIH 264
G +P C+IC F H ++ H IH
Sbjct: 8 GEKPYPCEICGTRFRHLQTLKSH-LRIH 34
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C++C KAF +K L H +IHTGEKP +
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TG K C C K F + H + H GEKP +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+ ++C +C A+ +LS H HTG KP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 313 SAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG K + C C K T +S+L H +
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TG K F C C + FT S
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKST 27
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S F+CT+C K F L+ HQ +H +P
Sbjct: 4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 60.3 bits (147), Expect = 4e-12
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
H K + C + C K+FN K +LKEH ++H+ + + C
Sbjct: 33 HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 56.0 bits (136), Expect = 1e-10
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 146 HTGEKPHTCEL--CSKGFLSAESYKCHLR-RHKGEKPVTCTFENCTETFVESWAMRKHVR 202
+G C+ C + F + + H + +H +K +C C ++F +++H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 203 TCH--NKPTVNRFPCDKCEK 220
H + + C+
Sbjct: 62 L-HSDTRD----YICEFSGP 76
Score = 52.9 bits (128), Expect = 1e-09
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRI-HTGEKPFTCN--ICSRKFTTYS 49
G C C + F+ + L H + H +K F+C C + F
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKK 54
Score = 52.6 bits (127), Expect = 2e-09
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 174 HKGEKPVTCTFENCTETFVESWAMRKHVRTCHN--KPTVNRFPCD--KCEKVYSCASSLT 229
G + C F C F + H + H K F C C K ++ L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS----FSCPEPACGKSFNFKKHLK 57
Query: 230 KHMKARLGRQPVSCDICHKEF 250
+HMK + C+
Sbjct: 58 EHMKLHSDTRDYICEFSGPSS 78
Score = 51.8 bits (125), Expect = 4e-09
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 269 FKCTK--CDKVFQHIQLLNRHQ-LVHMDTRPYQCPQ--CPMAYKTNISLSAHLMKHTGAK 323
C C ++F + Q LN H+ H+ + + CP+ C ++ L H+ H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 324 PYVCEICNK 332
Y+CE
Sbjct: 68 DYICEFSGP 76
Score = 49.1 bits (118), Expect = 4e-08
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 237 GRQPVSCDI--CHKEFTHPSSVLYHKQSIHNNEI-FKCT--KCDKVFQHIQLLNRHQLVH 291
G + CD C + F++ + +HK+ H ++ F C C K F + L H +H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 292 MDTRPYQCPQC 302
DTR Y C
Sbjct: 64 SDTRDYICEFS 74
Score = 48.7 bits (117), Expect = 5e-08
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 146 HTGEKPHTCE--LCSKGFLSAESYKCHLRRHKGEKPVTCTFENCT 188
H +K +C C K F + K H++ H + C F +
Sbjct: 33 HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 295 RPYQC--PQCPMAYKTNISLSAHL-MKHTGAKPYVCE--ICNKVLTHRSSLISHYR 345
C P C + L+ H +H K + C C K + L H +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 33.7 bits (78), Expect = 0.009
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 140 KLHLKRHTGEKPHTCELCSKGF 161
K H+K H+ + + CE
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78
Score = 32.9 bits (76), Expect = 0.017
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 319 HTGAKPYVCEI--CNKVLTHRSSLISHYR 345
+G+ C+ C ++ ++R L H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKK 30
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C++C KAF + NL +H +IHT +KP +
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F + H + H +KP +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY+C C K T RS+LI H +
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C +C A+ +L H HT KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C C + FT S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSN 27
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E + C +C K F L +HQ +H +P
Sbjct: 4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C C K F+Q +L+ H R+HTGEKP +
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
GEK + C++C K F + + H R H GEKP +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
M + Y+C C + + L H HTG KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
G K Y C++C K + S L +H R
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYS 49
GEK + C++C ++F+ S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSS 26
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC C K F L HQ VH +P
Sbjct: 4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C++C K F Q +L H RIHTGEKP +
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
G+K C C K F + S H R H GEKP +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 8e-05
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ G K + C C K T SSL H R
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+ ++C +C + + SL+ H HTG KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
G+K F CN C + FT S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSS 27
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + FKC +C K F L HQ +H +P
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C+K ++ +SSLT H + G +P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C +C K++NQ+ +L +H R+HTGEKP +
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 9e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C C K + H R H GEKP +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P++C +C +Y + L+ H HTG KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 9e-04
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKPF C C + +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVH 27
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KP+ C C K R L H R
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E FKC +C K + L +HQ VH +P
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+CS C K+F K L+ H + HTGE+ +
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 44.4 bits (106), Expect = 6e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F + H + H GE+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C C ++ L H HTG +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K T +S L H +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ C+ C + FT S++R
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRI 30
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC+ C K F L HQ H R
Sbjct: 4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 25.2 bits (56), Expect = 4.6
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 231 HMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK 273
+ G +P C C K FT S + H Q H E +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C C KAF+ +L +H R+H+GEKP +
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C++C K F S H R H GEKP +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C++C K +H +SL H R
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR 33
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C C A+ + SL+ H H+G KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C++C + F+ ++
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHAS 27
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C C K F H L +HQ VH +P
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 25.5 bits (57), Expect = 4.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
CD C K +S +SLT+H + G +P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 24.8 bits (55), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 231 HMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK 273
+ G +P CD+C K F+H +S+ H Q +H+ E +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVHSGEKPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C KAF + +L H H+GEKP +
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F + S H H GEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C A++ SL+ H H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C C K RSSL H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA 33
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ CN C + F S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSS 27
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C K F+ L HQ H +P
Sbjct: 4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK 273
+ G +P C+ C K F SS+ H Q+ H+ E +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGPSS 45
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.0 bits (144), Expect = 5e-12
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K Y+C++C KAFN K NL H R HTGE +
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 43.2 bits (103), Expect = 2e-06
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TGEKP+ C C K F + + H R H GE +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C A+ T +L H HTG
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ CN C + F T S
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSN 27
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K +S+L+ H R
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
Score = 30.5 bits (70), Expect = 0.052
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C +C K F L HQ H
Sbjct: 4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 5e-12
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C K F Q +L H+RIHTGEKP +
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP+ C C K F H R H GEKP +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C + N L+ H HTG KP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ +G KPY C C KV T S L +H+R
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
Score = 35.5 bits (83), Expect = 0.001
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+GEKP+ CN C + FT S
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSH 27
Score = 33.2 bits (77), Expect = 0.006
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E +KC +C KVF L H +H +P
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 58.7 bits (143), Expect = 5e-12
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K + CS C KAF+ K L H + H EKP +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP C C K F S H + H EKP +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G KP+ C C K + +S L+ H +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 34.0 bits (79), Expect = 0.003
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P+ C C A+ + L H H KP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 28 RIHTGEKPFTCNICSRKFTTYSQ 50
+GEKPF C+ C + F++ S
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSY 25
Score = 32.5 bits (75), Expect = 0.012
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E F C+ C+K F L HQ H + +P
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 24.8 bits (55), Expect = 6.7
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 132 SHKIYLGHKLHLKRHTGEKPHTC 154
S K YL +H + H EKP
Sbjct: 21 SSKSYL--LVHQQTHAEEKPSGP 41
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C KAF+Q L H RIHTGEKP +
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H R H GEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C A+ L+ H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C C K + S L H R
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ CN C + F+ S++ R
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLAR 30
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C K F L RHQ +H +P
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+CS+C KAF++ +L EH RIHTG +P +
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP+ C C K F H R H G +P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C A+ + L+ H HTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPY C C K + L H R
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+GEKP+ C+ C + F ++
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTH 27
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S + E +KC++C K F LN H+ +H RP
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C K F Q +L H RIHTG KP +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 41.4 bits (98), Expect = 9e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H R H G KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C + N L+ H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C KV T S L +H R
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ CN C + FT S +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLAN 30
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C KVF L HQ +H +P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K +QC +C K F Q +L H R+HTGEKP +
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP CE C K F H R H GEKP +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P+QC +C + N L +H HTG KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 36.8 bits (86), Expect = 4e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 25 EHFRIHTGEKPFTCNICSRKFTTYSQ 50
+GEKPF C C ++FT S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSH 27
Score = 36.4 bits (85), Expect = 5e-04
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+G KP+ CE C K T S L SH R
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E F+C +C K F L+ HQ VH +P
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C +C KAF Q +L H RIHTGEKP +
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+P++C +C A++ NI L++HL HTG KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP C+ C K F HLR H GEKP +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 7e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ +G KP+ C+ C K L SH R
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
Score = 35.9 bits (84), Expect = 8e-04
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+GEKPF C C + F
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIH 27
Score = 33.2 bits (77), Expect = 0.008
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E FKC +C K F+ L H +H +P
Sbjct: 4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+CS C K+F +K L H +IHTGEKP +
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C +C K F H + H GEKP +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C C ++ L H HTG KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 5e-05
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C IC K T +S L H +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C+IC + FT SQ
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQ 27
Score = 30.6 bits (70), Expect = 0.057
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C+ C K F L+ HQ +H +P
Sbjct: 4 GSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G +P C IC K FT S + H Q IH E
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGE 38
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + Y C+ C KAF + NL +H +IHTGEKP +
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TGE+P+ C +C K F + H + H GEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
RPY C C A+ +L H HTG KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG +PY+C +C K T RS+LI H +
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGE+P+ C +C + FT S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSN 27
Score = 32.8 bits (76), Expect = 0.009
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E + CT C K F L +HQ +H +P
Sbjct: 4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C K + ++ +L H R+HTGEK +
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP+ C C KG+ H R H GEK +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C YK + L H HTG K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ +G KPY C C K R L H R
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33
Score = 34.8 bits (81), Expect = 0.002
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+GEKP+ C C + + +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDF 30
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E +KC +C K ++ L+ HQ VH +
Sbjct: 4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K YQC++C KAF+Q L H R+HTGEKP +
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 6e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TG KP+ C C K F H R H GEKP +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PYQC +C A+ L+ H HTG KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K + S L H R
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TG KP+ CN C + F+ S++ R
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLAR 30
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S ++C +C K F L RHQ VH +P
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 7e-12
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K ++CS+C KAFN K NL H R HTGEKP
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C C K F + + H R H GEKP +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+P++C +C A+ T +L H HTG KP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 37.8 bits (89), Expect = 1e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KP+ C C K +S+LI H R
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKPF C+ C + F T S
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSN 27
Score = 32.5 bits (75), Expect = 0.014
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E F+C++C K F L HQ H +P
Sbjct: 4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
K Y+C C K +N++ NL H R+H GEK +
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+ EKP+ CE C KG+ + H R H GEK +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C C Y ++L H H G K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ + KPY CE C K R +L H R
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
Score = 35.9 bits (84), Expect = 8e-04
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+ EKP+ C C + +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLN 27
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E +KC C K + L+ HQ VHM +
Sbjct: 4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G Y+C +C KAF++K L H R H GEKP +
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGE P+ C C K F H R H GEKP +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
PY+C +C A+ L +H H G KP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG PY C C K + + LISH R
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR 33
Score = 35.2 bits (82), Expect = 0.002
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGE P+ C+ C + F+ Q
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQ 27
Score = 30.9 bits (71), Expect = 0.040
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C +C K F L HQ H +P
Sbjct: 4 GSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G+K Y CSQC K F+ K L H R HTG KP +
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TG KP+ C C+K F H R H G KP +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY C QC + L H HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K + +S LI H R
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
Score = 36.4 bits (85), Expect = 6e-04
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TG KP+ C+ C++ F+ SQ
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQ 27
Score = 31.0 bits (71), Expect = 0.050
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + C++C K F L HQ H +P
Sbjct: 4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C+QC KAF+ + +L H IHTG+KP +
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F S H H G+KP +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C QC A+ SL+ H HTG KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 38.7 bits (91), Expect = 7e-05
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C C K + RSSL +H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ CN C + F+ S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSS 27
Score = 33.7 bits (78), Expect = 0.006
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C +C K F L HQ +H +P
Sbjct: 4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 25.6 bits (57), Expect = 3.9
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK 273
+ G +P C+ C K F+ SS+ H Q+IH + +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C K +S SSLT H G++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + Y+CS+C KAF +K L H RIHTGEKP +
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGE+ + C C K F + H R H GEKP +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
R Y+C +C A+ +L H HTG KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG + Y C C K +S+LI H R
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 25 EHFRIHTGEKPFTCNICSRKFTTYSQ 50
TGE+ + C+ C + F S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKST 27
Score = 31.7 bits (73), Expect = 0.027
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C++C K F L HQ +H +P
Sbjct: 4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C KAF+Q +L +H R+HTGEKP +
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C+ C K F H R H GEKP +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C A+ L H HTG KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C+ C K + + LI H R
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C C + F+ +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTH 27
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C +C K F L +HQ VH +P
Sbjct: 4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 58.4 bits (142), Expect = 8e-12
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFT 37
G Y C QC K+F Q+G+L H R + P +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 41.9 bits (99), Expect = 6e-06
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
GE P+ C C K F S H R P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 37.6 bits (88), Expect = 2e-04
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
G PY+C C K T R SL H R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPY 325
PY C QC ++ SL+ H + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 30.7 bits (70), Expect = 0.050
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 26 HFRIHTGEKPFTCNICSRKFT 46
GE P+ C C + FT
Sbjct: 2 SSGSSGGETPYLCGQCGKSFT 22
Score = 25.7 bits (57), Expect = 2.8
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPY 297
+ C +C K F L HQ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 25.3 bits (56), Expect = 4.1
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
G P C C K FT S+ H Q +
Sbjct: 8 GETPYLCGQCGKSFTQRGSLAVH-QRSCSQS 37
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C++C K+F QK +L H RIHTGEKP +
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F+ H R H GEKP +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C +C ++ L+ H HTG KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY+C C K +S L H R
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ CN C + F S + R
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNR 30
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E + C +C K F LNRH+ +H +P
Sbjct: 4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C KAF NL H IHTGEKP +
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F + + H H GEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C A++ + +L+ H + HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K S+L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ CN C + F +S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSN 27
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C K F+ L HQ++H +P
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C +C K F Q L H R+HTGEKP +
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP CE C K F H R H GEKP +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P++C +C + N L +H HTG KP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+G KP+ CE C K T S L SH R
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+GEKPF C C ++FT SQ+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHS 30
Score = 33.3 bits (77), Expect = 0.007
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S + E FKC +C K F L+ HQ VH +P
Sbjct: 4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 58.4 bits (142), Expect = 9e-12
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFT 37
G + Y+C +C K+F QKG+L H RIHTG P +
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 38.7 bits (91), Expect = 6e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
+G++ + C+ C K F S H R H G P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 35.6 bits (83), Expect = 9e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G + Y C+ C K + SL H R
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHER 31
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPY 325
R Y+C +C +++ SL+ H HTG+ P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.1 bits (66), Expect = 0.16
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 28 RIHTGEKPFTCNICSRKFTTYSQ 50
+G++ + C C + F
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGS 25
Score = 27.2 bits (61), Expect = 0.84
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPY 297
++C +C K F+ L H+ +H + P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 58.3 bits (142), Expect = 9e-12
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFT 37
G K Y+C QC KAF+QKG+L H R+HTG P +
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
GEKP+ C+ C K F S H+R H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 39.5 bits (93), Expect = 4e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
G KPY C+ C K + + SLI H R
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPY 325
+PY+C QC A+ SL H+ HTG+ P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 36.0 bits (84), Expect = 6e-04
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
GEKP+ C+ C + F+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGS 26
Score = 28.3 bits (64), Expect = 0.35
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPY 297
E ++C +C K F L H VH + P
Sbjct: 3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 25.6 bits (57), Expect = 3.0
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
GEKP C C + F + ++ H+R
Sbjct: 2 SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRV 33
Score = 25.2 bits (56), Expect = 4.5
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 231 HMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G +P CD C K F+ S++ H +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVHTGS 37
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C +C K+F++ L +H R+H+GEKP +
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 44.4 bits (106), Expect = 7e-07
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEK + C+ C K F A H R H GEKP +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 38.7 bits (91), Expect = 7e-05
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+ Y C +C ++ L H H+G KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG K Y C+ C K + L+ H R
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
Score = 36.0 bits (84), Expect = 8e-04
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEK + C C + F+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPC 27
Score = 31.3 bits (72), Expect = 0.037
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E + C +C K F L +H+ +H +P
Sbjct: 4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C K F Q G+L +H R+HTGE+ +
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
+G+KP+ C+ C K F+ H R H GE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C + L+ H HTG +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 35.6 bits (83), Expect = 9e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ +G KPY C+ C K L H R
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S + + ++C +C K F I LN+H+ VH R
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 33.3 bits (77), Expect = 0.008
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+G+KP+ C C + F
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGH 27
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C C K+F +L H RIHTGEKP +
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 7e-07
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C++C K F S H R H GEKP +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 7e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C++C+K + SSL H R
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C C +++ SL+ H HTG KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C++C + F S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSS 27
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC C K F++ L HQ +H +P
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
CD C K + SSLT H + G +P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 6.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
G +P CD+CHK F + SS+ H Q IH E
Sbjct: 9 GEKPYKCDVCHKSFRYGSSLTVH-QRIHTGE 38
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 58.0 bits (141), Expect = 1e-11
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C +C K+F L +H R+H+GEKP +
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 44.5 bits (106), Expect = 7e-07
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C+ C K F A H R H GEKP +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 42.2 bits (100), Expect = 4e-06
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C +C +++ L H H+G KP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C+ C K S L+ H R
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C C + F S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASC 27
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S E + C +C K F+ L +HQ VH +P
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C +C K + AS L KH + G +P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C +C F+Q +L+ H +H GEKP +
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
GEK C C F A S + H H GEKP +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
M + ++C +C M + SL H H G KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ G K + C C+ + SSL H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 261 QSIHNNE-IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S E +KC +CD F L HQ VH+ +P
Sbjct: 4 GSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.006
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
GEK + C C F+ S +R
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRL 30
Score = 24.8 bits (55), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C +C+ +S ASSL H +G +P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C K F Q +L H R+HTG KP +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H R H G KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C + N L+ H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ CN C + FT S + R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLAR 30
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C KV T S L H R
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33
Score = 32.5 bits (75), Expect = 0.014
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C KVF L RH+ VH +P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K+Y+C++C K F++ L +H +IHTGEKP +
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEK + C C K F H + H GEKP +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+ Y+C +C + N LS H HTG KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG K Y C C KV + S L H +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEK + CN C + F+ SQ
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQ 27
Score = 32.5 bits (75), Expect = 0.012
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C KVF L++HQ +H +P
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C KV+S S L++H K G +P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K Y+C++C KAF + NL H +IHTGEKP
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TGEKP+ C C K F + H + H GEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C A+ +L H HTG KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K T RS+L +H +
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C C + FT S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSN 27
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C +C K F L HQ +H +P
Sbjct: 4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C K F Q +L H IHTGEKP +
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TG+KP+ C C K F H H GEKP +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C + N L+ H HTG KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C KV T S L H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TG+KP+ CN C + FT S + R
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLAR 30
Score = 32.5 bits (75), Expect = 0.012
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + +KC +C KVF L RH+ +H +P
Sbjct: 4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C C K+F + L H +HT EKP +
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C++C K F H H EKP +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+P++C C ++ L+ H M HT KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KP+ C+IC K RS L H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKPF C+IC + F S++ R
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNR 30
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E FKC C K F LNRH +VH +P
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 25.1 bits (56), Expect = 5.7
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 231 HMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G +P CDIC K F S + H +H E
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTAE 38
Score = 24.8 bits (55), Expect = 7.4
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCD 244
F CD C K + S L +H +P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C K F Q +L H IHTGEKP +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H H GEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 40.5 bits (96), Expect = 2e-05
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C + N L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C KV T S L+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
Score = 35.9 bits (84), Expect = 8e-04
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ CN C + FT S + R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVR 30
Score = 32.5 bits (75), Expect = 0.014
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C KVF L RH+ +H +P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + ++C++C K F ++ +L H R+H+ EK +
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GE+P C C KGF HLR H EK +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 39.1 bits (92), Expect = 6e-05
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
RP++C +C + L+ HL H+ K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G +P+ C C K RS L H R
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+GE+PF CN C + F S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSH 27
Score = 32.1 bits (74), Expect = 0.018
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E FKC +C K F L H +H +
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C C KAF +L +H +H+GE+P +
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C++C K F + H H GE+P +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C C A++ + L H H+G +P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C++C K S L+ H+
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 25 EHFRIHTGEKPFTCNICSRKFTTYS 49
TGEKP+ C +C + F S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSS 26
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC C K F+ L +H VH RP
Sbjct: 4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C +C KAF L+EH RIHTGEKP +
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ CE C K F+ + H R H GEKP +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C +C A+ + L H HTG KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY CE C K H S L H R
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C C + F SQ
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQ 27
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E + C +C K F H L HQ +H +P
Sbjct: 4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.2
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G +P +C+ C K F H S + H Q IH E
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIHTGE 38
Score = 24.8 bits (55), Expect = 6.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C K + S L +H + G +P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + ++C++C K+F Q +L +H RIHTGEKP +
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGE+PH C C K F+ + H R H GEKP +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
RP++C +C ++ + L H HTG KP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG +P+ C C K + LI H R
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 26 HFRIHTGEKPFTCNICSRKFT 46
TGE+P CN C + F
Sbjct: 3 SGSSGTGERPHKCNECGKSFI 23
Score = 32.9 bits (76), Expect = 0.008
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E KC +C K F L +HQ +H +P
Sbjct: 4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G Y+CS+C KAFN+K L H R H GE +
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 144 KRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
+GE P+ C C K F + H R H GE +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G PY C C K + LISH R
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQR 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 288 QLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
PY+C +C A+ L +H H G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 32.1 bits (74), Expect = 0.018
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 28 RIHTGEKPFTCNICSRKFTTYSQ 50
+GE P+ C+ C + F Q
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQ 25
Score = 30.9 bits (71), Expect = 0.042
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E ++C++C K F L HQ H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 25.2 bits (56), Expect = 5.1
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 5/26 (19%)
Query: 129 SKSSHKIYLGHKLHLKRHTGEKPHTC 154
++ I H + H GE +
Sbjct: 21 NRKDQLI-----SHQRTHAGESGPSS 41
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C K F Q +L H IHTGEKP +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 8e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H H GEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C + N L+ H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 7e-04
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ CN C + FT S + R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLAR 30
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C KV T S L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
Score = 32.1 bits (74), Expect = 0.015
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C KVF L RH+ +H +P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G+K Y C++C KAF K L H R HTGE +
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.4 bits (106), Expect = 8e-07
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TG KP+ C C K F S H R H GE +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.5 bits (96), Expect = 2e-05
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY C +C A+++ L H HTG
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPYVC C K +S LI H R
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR 33
Score = 35.9 bits (84), Expect = 6e-04
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYS 49
TG KP+ CN C + F + S
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKS 26
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + C +C K F+ L H H
Sbjct: 4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 25.5 bits (57), Expect = 3.2
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 132 SHKIYLGHKLHLKRHTGEKPHTC 154
K YL +H + HTGE +
Sbjct: 23 RSKSYL--IIHTRTHTGESGPSS 43
Score = 24.4 bits (54), Expect = 9.2
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
G KP C C + F + H RT
Sbjct: 3 SGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRT 34
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + Y+C +C KAF K +L H R HTGEKP +
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TG++P+ C C K F + S CH R H GEKP +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
RPY+C +C A+KT SL H HTG KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG +PY C C K +SSLI H R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TG++P+ C C + F T S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSS 27
Score = 31.7 bits (73), Expect = 0.022
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + ++C +C K F+ L H+ H +P
Sbjct: 4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C +C K + SSL H ++ G +P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 2e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+CS C K+F +K L H RIHTGE P +
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TGEKP+ C C K F+ H R H GE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C C ++ L H HTG P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K +S L H R
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C+ C + F SQ
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQ 27
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C+ C K F L+ HQ +H P
Sbjct: 4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C K F + +L H IHTGEKP +
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 9e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H H GEKP +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C ++ N L+ H + HTG KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 8e-04
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C KV S L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
Score = 35.5 bits (83), Expect = 0.001
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ C+ C + F S + R
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLAR 30
Score = 32.8 bits (76), Expect = 0.009
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C KVF+ L RHQL+H +P
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G+K Y C++C KAF+ +L H IHTGEKP +
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C +C A+ SL+ H + HTG KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TG KP+ C C K F S H H GEKP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY+C C K + SSL +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
Score = 36.3 bits (85), Expect = 5e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TG KP+ CN C + F+ YS
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSS 27
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + C +C K F L HQ++H +P
Sbjct: 4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C K +S SSLT H G +P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 18/38 (47%), Positives = 19/38 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C C KAF L H RIHTGEKP +
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP+ C+ C K F + H R H GEKP +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY C C A+ + L H HTG KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPYVC+ C K + L+ H R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+GEKP+ C+ C + F ++
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAE 27
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S + E + C C K F L RHQ +H +P
Sbjct: 4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 3.5
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
CD C K + ++ L +H + G +P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C++C K F L H RIHTGEKP +
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F H R H GEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C ++ N LS H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C C KV H S L H R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ CN C + F S + R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSR 30
Score = 34.4 bits (80), Expect = 0.003
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C KVF+H L+RHQ +H +P
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 6.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C KV+ S L++H + G +P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C K F + +L H +HTGEKP +
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ CE C KGF+ H H GEKP +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C + L H M HTG KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 39.1 bits (92), Expect = 6e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY CE C K R L +H+
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHM 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKP+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYT 30
Score = 32.9 bits (76), Expect = 0.011
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C K F + L H +VH +P
Sbjct: 4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.7
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C K + C L H G +P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
+G K YQCS+C K+F+ L +H+ HT EKP +
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
GEKP+ C C K F + H H EKP +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PYQC +C ++ + L+ H + HT KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ G KPY C C K + L H+
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
Score = 34.1 bits (79), Expect = 0.003
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
GEKP+ C+ C + F+ +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYR 27
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C++C K F L +H + H +P
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y C+ C KAF +L +H R+HT E +
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP++C +C K F+ + HLR H E +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C C A+ + L+ HL HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 25 EHFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP++CN+C + F +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAH 27
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KPY C +C K + L H R
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E + C C K F LN+H VH
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 25.2 bits (56), Expect = 5.9
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSCD 244
C+ C K + ++ L +H++
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K Y+C +C KAF + +H R+HTG++P +
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP+ C C K F S H R H G++P +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY+C +C A+ N S + H HTG +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K SS H R
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP+ C C + F S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSS 27
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +KC +C K F +HQ +H RP
Sbjct: 4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 26.0 bits (58), Expect = 2.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C +C K + SS T+H + G++P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C +C K F+++ L H ++HTGEKP +
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 6e-07
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C C KGF + H + H GEKP +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 8e-05
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P++C +C + +L+ H HTG KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KP+ C C K + RS+L H++
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKPF C C + F+ S
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSA 27
Score = 34.0 bits (79), Expect = 0.003
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E FKC +C K F LN H +H +P
Sbjct: 4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 56.8 bits (138), Expect = 3e-11
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFT 37
G K Y+C C F Q +L+ H IHTG P +
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
GEKP+ CE C F+ + H+ H G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 39.4 bits (93), Expect = 4e-05
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
G KPY CE C + L +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32
Score = 36.3 bits (85), Expect = 4e-04
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
GEKP+ C C +F + +R
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRA 29
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPY 325
+PY+C C + L AH++ HTG+ P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 28.6 bits (65), Expect = 0.27
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPY 297
+KC C F + L H L+H + P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 27.5 bits (62), Expect = 0.74
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
GEKP C E C FV+ +R HV
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLI 33
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K + C C KAF+ L +H RIHTGEKP +
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C C K F H R H GEKP +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+P+ C C A+ +I L+ H HTG KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KP+ C C K + L H R
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKPF C C + F+ +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIG 27
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E F C C K F LN+H+ +H +P
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 9.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSC 243
F C C K +S L +H + G +P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K +C++C KAF K L H R H +K +
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C C K F H R H +K +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KP C C K +S LI H R
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
Score = 36.8 bits (86), Expect = 4e-04
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P +C +C A+ L H H K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP C C + F SQ
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQ 27
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E KCT+C K F L HQ H+D +
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C +C K+F+ L H RIHTGE P +
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKPH C C K F H R H GE P +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P++C +C ++ N L H HTG P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KP+ C C K + S LI H R
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKP C C + F+ SQ
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQ 27
Score = 31.7 bits (73), Expect = 0.022
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E +C +C K F L HQ +H P
Sbjct: 4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 25.2 bits (56), Expect = 5.9
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEI-FKCTK 273
+ G +P C C K F+ S ++ H Q IH E +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH-QRIHTGENPSGPSS 45
Score = 24.4 bits (54), Expect = 8.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C +C K +S S L H + G P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K Y CS+C KAF+ K L H R H+GEKP
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
GEKP+ C C K F S H+R H GEKP +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+PY C +C A+ + L H+ H+G KP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ G KPY C C K + +S LI H R
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
GEKP+ C+ C + F++ S
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSY 27
Score = 31.0 bits (71), Expect = 0.039
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E + C++C K F L H H +P
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.1
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 129 SKSSHKIYLGHKLHLKRHTGEKPHTCE 155
S S+ I +H++ H+GEKP
Sbjct: 23 SSKSYLI-----IHMRTHSGEKPSGPS 44
Score = 24.4 bits (54), Expect = 9.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C +C K +S S L HM+ G +P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
K +QC +C + F K +L +H RIHTGEKP
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+ K H C C +GF H R H GEKP +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 36.8 bits (86), Expect = 4e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+ K + C C + T +S L H R
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 36.4 bits (85), Expect = 6e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
T+ +QC +C + L+ H HTG KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+ K C+ C R FT S
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSH 27
Score = 31.7 bits (73), Expect = 0.020
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S ++ +C +C + F LN+HQ +H +P
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 5e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K ++C +C K F H R H+GEKP +
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 44.9 bits (107), Expect = 5e-07
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEKP CE C KGF + H R H GEKP +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 9e-06
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+P++C +C + TN +H H+G KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ +G KP+ CE C K S SH R
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33
Score = 36.8 bits (86), Expect = 4e-04
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+GEKPF C C + F T SQ
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYS 30
Score = 32.5 bits (75), Expect = 0.011
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E FKC +C K F HQ H +P
Sbjct: 4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 56.4 bits (137), Expect = 5e-11
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K ++C++C K+F+ L H RIHTGEKP
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C C K F + H R H GEKP +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 9e-06
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+P++C +C ++ + L+ H HTG KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KP+ C C K + S L +H R
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGEKPF C C + F+ SQ
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQ 27
Score = 32.1 bits (74), Expect = 0.016
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E F+C +C K F L HQ +H +P
Sbjct: 4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + ++CS C K F Q N +H RIHTGEKP +
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
GE+ H C C K FL A ++ H R H GEKP +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
G + + C C K S+ I H R
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
R ++C C + + H HTG KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
GE+ C+ C + F S
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASN 27
Score = 31.0 bits (71), Expect = 0.048
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E +C+ C K F +H+ +H +P
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G + C C K F S+ + H + IH E
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGE 38
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K Y+C++C KAF K L H R H G +
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
+GEKP+ C C K F+ H R H G +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY+C +C A+ L H H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ +G KPY C C K +S LI H R
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
Score = 36.4 bits (85), Expect = 5e-04
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
+GEKP+ CN C + F S
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSL 27
Score = 29.0 bits (66), Expect = 0.19
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E ++C +C K F LL H+ H
Sbjct: 4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 24.8 bits (55), Expect = 6.9
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 215 CDKCEKVYSCASSLTKHMKARLGRQPVSC 243
C++C K + S L H + G S
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G Y+C +C K F++K L H + H+G+ +
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TGE P+ C C K F + H + H G+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
TG PY C C KV + + L+SH +
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQK 33
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
PY+C +C + L +H H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.9 bits (76), Expect = 0.008
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQ 50
TGE P+ C C + F+ Q
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQ 27
Score = 30.9 bits (71), Expect = 0.045
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S E ++C +C KVF L HQ H
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G + Y C++C K F + +L EH + H EK +
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GE+P+ C C K F HL+RH EK +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
RPY C +C + + L HL +H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYS 49
+GE+P+ CN C + F +S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHS 26
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G +PY C C K S LI H +
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 33.6 bits (78), Expect = 0.004
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E + C +C K F L H H +
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.6 bits (57), Expect = 4.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSC 243
+ C++C K + S L +H+K +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-10
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K +QC +C F+ +L +H R H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 47.2 bits (113), Expect = 8e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
TGEKP C+ C F + S HLR H+ P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 39.9 bits (94), Expect = 3e-05
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+P+QC +C M + + SL HL H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KP+ C+ C + SL H R
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TGEKPF C C F+ + +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFK 30
Score = 29.1 bits (66), Expect = 0.20
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
GEKP C + C F S ++ KH+R+
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRS 34
Score = 28.7 bits (65), Expect = 0.30
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQ 301
S E F+C +C F L +H H T P
Sbjct: 4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 28.3 bits (64), Expect = 0.34
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCD 244
F C +C +S + SL KH+++ P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 54.3 bits (131), Expect = 4e-10
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 142 HLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
+ + H C C K + + K H R H GEKP +C+++ C F S + +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 200 HVRT 203
H RT
Sbjct: 68 HRRT 71
Score = 50.5 bits (121), Expect = 9e-09
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNI--CSRKFTTYSQVRR 53
I+ + CS C K + + +LK H R HTGEKPF+C+ C R+F ++ R
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Score = 41.6 bits (98), Expect = 1e-05
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 284 LNRHQLVHMDTRPYQC--PQCPMAYKTNISLSAHLMKHTGAKPYVC--EICNKVLTHRSS 339
+ Q+ R + C P C Y + L AH HTG KP+ C + C +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 340 LISHYR 345
L H R
Sbjct: 65 LSRHRR 70
Score = 37.4 bits (87), Expect = 4e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 129 SKSSHKIYLGHKLHLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRH 174
KSSH K H + HTGEKP +C + C + F ++ H R H
Sbjct: 30 FKSSHL-----KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 37.4 bits (87), Expect = 4e-04
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 166 SYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHN--KPTVNRFPCD--KCEKV 221
+ C+ C +T+ +S ++ H RT H KP F C CE+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKP----FSCSWKGCERR 58
Query: 222 YSCASSLTKHMK 233
++ + L++H +
Sbjct: 59 FARSDELSRHRR 70
Score = 29.3 bits (66), Expect = 0.38
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 311 SLSAHLMKHTGAKPYVCEI--CNKVLTHRSSLISHYR 345
S + + + ++C C K S L +H R
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR 40
Score = 28.9 bits (65), Expect = 0.43
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 1 WHQGIKQYQCSQ--CPKAFNQKGNLKEHFRIH 30
H G K + CS C + F + L H R H
Sbjct: 41 THTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 26.2 bits (58), Expect = 4.5
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 254 SSVLYHKQSIHNNE-IFKCTK--CDKVFQHIQLLNRHQLVHMDTRPYQC--PQCPMAYKT 308
SS Q + C+ C K + L H H +P+ C C +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 309 NISLSAHLMKH 319
+ LS H H
Sbjct: 62 SDELSRHRRTH 72
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 53.7 bits (130), Expect = 4e-10
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFR-IHTGEKPFTCN 39
G K Y+C +C KAF Q +L H+R HTGEKP +
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 41.0 bits (97), Expect = 1e-05
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRR-HKGEKPVTCT 183
TG+KP+ C C K F+ S H R H GEKP +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 39.5 bits (93), Expect = 4e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ TG KPY C C K +SLI H+R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWR 33
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK-HTGAKPYVC 327
+PY+C +C A+ N SL H HTG KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
TG+KP+ C C + F + + R
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIR 30
Score = 29.5 bits (67), Expect = 0.15
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQ-LVHMDTRPYQCP 300
S + ++C +C K F L RH H +P
Sbjct: 4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 25.2 bits (56), Expect = 5.1
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 231 HMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G++P C C K F +S++ H + H E
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE 39
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 53.4 bits (129), Expect = 1e-09
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 2 HQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
H Y+C C K F+ LK H ++H G + CS T++
Sbjct: 26 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 76
Score = 52.2 bits (126), Expect = 4e-09
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 153 TCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNR 212
E C K F K H H + P C E C + F +++H + H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAG--YPC 61
Query: 213 FPCDKCEKVYSCASSLTKHMK 233
D C V + KH+
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVA 82
Score = 51.9 bits (125), Expect = 4e-09
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 268 IFKCT--KCDKVFQHIQLLNRHQLVHMDTRPYQCPQ--CPMAYKTNISLSAHLMKHTGAK 323
++ C C K F+ L HQ H PY+CP C + L H H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 324 PYVCEICNKVLTHRSSLISHYR 345
+ C+ V + + H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVA 82
Score = 49.5 bits (119), Expect = 3e-08
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 8 YQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCN--ICSRKFTTYSQVRR 53
Y C C KAF + LK H HT + P+ C C ++F+ S+++R
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR 51
Score = 49.5 bits (119), Expect = 3e-08
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 129 SKSSHKIYLGHKLHLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFEN 186
K + K+H HT + P+ C E C K F K H + H G ++
Sbjct: 14 KKHNQL-----KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD--DS 66
Query: 187 CTETFVESWAMRKHVRTCH 205
C+ KHV CH
Sbjct: 67 CSFVGKTWTLYLKHVAECH 85
Score = 39.5 bits (93), Expect = 9e-05
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 242 SCDICHKEFTHPSSVLYHKQSIHNNE-IFKCT--KCDKVFQHIQLLNRHQLVHMDTRPYQ 298
+ C K F + + H Q H + ++C CDK F L RH+ VH +
Sbjct: 5 HFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Query: 299 CPQCPMAYKTNISLSAHLMK 318
C KT H+ +
Sbjct: 64 DDSCSFVGKTWTLYLKHVAE 83
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 53.1 bits (128), Expect = 1e-09
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 HQGIKQYQCS--QCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKF 45
++ Y C C + F++ L H RIHTG+KPF C IC R F
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 46.1 bits (110), Expect = 4e-07
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 129 SKSSHKIYLGHKLHLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCTFEN 186
++ L +P+ C E C + F ++ H+R H G+KP C
Sbjct: 4 HPMNN-------LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RI 54
Query: 187 CTETFVESWAMRKHVRT 203
C F S + H+RT
Sbjct: 55 CMRNFSRSDHLTTHIRT 71
Score = 41.5 bits (98), Expect = 1e-05
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
H++ HTG+KP C +C + F ++ H+R H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.5 bits (98), Expect = 1e-05
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 170 HLRRHK--GEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASS 227
+L + +P C E+C F S + +H+R H F C C + +S +
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTG--QKPFQCRICMRNFSRSDH 64
Query: 228 LTKHMK 233
LT H++
Sbjct: 65 LTTHIR 70
Score = 40.8 bits (96), Expect = 3e-05
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 284 LNRHQLVHMDTRPYQCP--QCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLI 341
L + + RPY CP C + + L+ H+ HTG KP+ C IC + + L
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 342 SHYR 345
+H R
Sbjct: 67 THIR 70
Score = 39.6 bits (93), Expect = 7e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHT 31
H G K +QC C + F++ +L H R HT
Sbjct: 44 HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 34.2 bits (79), Expect = 0.006
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 269 FKCT--KCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHT 320
+ C CD+ F L RH +H +P+QC C + + L+ H+ HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.0 bits (68), Expect = 0.16
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 197 MRKHVRTCHNKPTVNRFPCD--KCEKVYSCASSLTKHMKARLGRQPVSCDICHKEF 250
+ +V +P + C C++ +S + LT+H++ G++P C IC + F
Sbjct: 9 LLNYVVP-KMRP----YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 28.8 bits (65), Expect = 0.51
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 17 FNQKGNLKEHFRIHTGEKPFTCNI--CSRKFT 46
+ NL + + +P+ C + C R+F+
Sbjct: 3 PHPMNNLLNY--VVPKMRPYACPVESCDRRFS 32
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.3 bits (121), Expect = 6e-09
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K + C +C K F L+ H R+H GEK +
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 44.9 bits (107), Expect = 5e-07
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
+GEK HTC+ C K F + + H R H GEK +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 36.8 bits (86), Expect = 4e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+G K + C+ C K + S+L H R
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR 33
Score = 34.1 bits (79), Expect = 0.003
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVR 52
+GEK TC+ C + F S +R
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALR 29
Score = 33.3 bits (77), Expect = 0.007
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+ + C +C + +L H H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 31.4 bits (72), Expect = 0.027
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + E C +C K F +I L HQ VHM +
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 26.8 bits (60), Expect = 1.3
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 231 HMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCD 275
+ G + +CD C K F + S++ H Q +H E KC+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGE--KCSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
K Y C++C KAF + +L H +IHT + +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 3e-04
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
T K + C C K F H + H + +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 3e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 25 EHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
T K + CN C + FT + R
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTR 30
Score = 34.1 bits (79), Expect = 0.003
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
T +K Y C C K T L H +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 31.8 bits (73), Expect = 0.024
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
D++ Y C +C A+ L+ H HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 29.9 bits (68), Expect = 0.10
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 261 QSIHNNEI-FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
S + + C +C K F I L RHQ +H
Sbjct: 4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 49.2 bits (118), Expect = 1e-08
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 1 WHQGIKQYQCSQ--CPKAFNQKGNLKEHFRIHTGEKPFTCN 39
G K + C+ C F++ L H R H+G KP +
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 47.7 bits (114), Expect = 5e-08
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 142 HLKRHTGEKPHTC--ELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
TGEKP C C F ++ H R H G KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 38.4 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
GEKP CT+ C F S + +H R+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 26 HFRIHTGEKPFTCN--ICSRKFT 46
TGEKPF C C +F+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFS 25
Score = 34.2 bits (79), Expect = 0.003
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 287 HQLVHMDTRPYQC--PQCPMAYKTNISLSAHLMKHTGAKPYVCE 328
+P+ C P C + + LS H H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 34.2 bits (79), Expect = 0.003
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 314 AHLMKHTGAKPYVC--EICNKVLTHRSSLISHYR 345
+ TG KP+ C C + L H R
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35
Score = 26.5 bits (59), Expect = 1.9
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 269 FKCT--KCDKVFQHIQLLNRHQLVHMDTRPYQC 299
F CT C F L+RH+ H +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 48.4 bits (115), Expect = 3e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICS 42
+ KQ C C K F +L H H+GEKP++ S
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 40.7 bits (95), Expect = 2e-05
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 144 KRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
K CE+C K F H H GEKP +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 37.6 bits (87), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQC 302
C C K+F+ + LNRH+L H +PY
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 34.5 bits (79), Expect = 0.003
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICN 331
+ C C ++ L+ H + H+G KPY +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 0.54
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 206 NKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDIC 246
+ T + C+ C K++ L +H + G +P S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.4 bits (58), Expect = 1.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 140 KLHLKRHTGEKPHTCELCS 158
H H+GEKP++ S
Sbjct: 29 NRHKLSHSGEKPYSSGPSS 47
Score = 26.4 bits (58), Expect = 2.0
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 318 KHTGAKPYVCEICNKVLTHRSSLISHYR 345
K CEIC K+ L H
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKL 33
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 48.6 bits (115), Expect = 4e-08
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNT 57
+Y C +C + LK+H R HT +P+ C C+ F T + + +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 41.2 bits (96), Expect = 1e-05
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+ C +C + +L +H H D RPY C C ++KT +L+ H+ +K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 40.5 bits (94), Expect = 3e-05
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 297 YQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
Y C +C + K L H+ HT +PY C CN + +L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.5 bits (94), Expect = 3e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
H ++ Y C+ C +F KGNL +H + K
Sbjct: 24 HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 40.1 bits (93), Expect = 4e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
K H++ HT +P+ C C+ F + + H++ K
Sbjct: 18 KKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.8 bits (82), Expect = 0.001
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 212 RFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQS 262
++ C++C S L KH++ +P C C+ F ++ H +S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.3 bits (78), Expect = 0.004
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 152 HTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
+ CE C K H+R H +P C C +F + KH+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKS 51
Score = 30.1 bits (67), Expect = 0.12
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 243 CDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVH 291
C+ C PS + H ++ + + CT C+ F+ L +H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 46.5 bits (111), Expect = 1e-07
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
G K Y C++C + F+ L +H ++HT + +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.9 bits (86), Expect = 3e-04
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTC 182
+GEKP++C C + F H + H + +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.5 bits (85), Expect = 4e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G KPY C C + + + L+ H +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQK 31
Score = 30.0 bits (68), Expect = 0.083
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 28 RIHTGEKPFTCNICSRKFTTYSQ 50
+GEKP++C C F+ ++
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNR 25
Score = 27.7 bits (62), Expect = 0.54
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
+ C +C + F L +HQ +H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 27.7 bits (62), Expect = 0.67
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVC 327
+PY C +C + N L H HT
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.1 bits (58), Expect = 2.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSC 243
+ C +C++ +S + L +H K + S
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 46.7 bits (110), Expect = 6e-07
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 212 RFPCDKCEKVYSCASSLTKHMK-----ARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNN 266
+F C C Y LT HM + + + S+L +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 267 EIFKCTKCDKVFQHIQLLNRH--QLVHMDTRPYQ 298
++ KC C F+ +Q L+ H + H
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 45.5 bits (107), Expect = 2e-06
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 140 KLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRK 199
KL+ TG C+ CS + + H+ G + S ++
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET-GHYRDDNHETDNNNPKRWSKPRKR 66
Query: 200 HVRTCHNKPTVNR-FPCDKCEKVYSCASSLTKHMK 233
+ K + C C + L+ HM
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 43.6 bits (102), Expect = 7e-06
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 5/103 (4%)
Query: 223 SCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIH-----NNEIFKCTKCDKV 277
S SS + G C C + + H N+E
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 278 FQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHT 320
+ L + + +C C ++++ LS H++K
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 40.9 bits (95), Expect = 6e-05
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSA 59
G +++C C A++ L H TG + R +
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRWSKPRKRSLLE 70
Score = 37.8 bits (87), Expect = 8e-04
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 5/95 (5%)
Query: 254 SSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLV--HMDTRPYQCPQCPMAYKT--- 308
SS + F+C C + + L H H ++ +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 309 NISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
SL K K C C L H
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 37.1 bits (85), Expect = 0.001
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 18 NQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQ 50
+ + K + I TG F C CS + T +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVE 34
Score = 30.1 bits (67), Expect = 0.33
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHK 175
+ +K C C F S + H+ + K
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 29.0 bits (64), Expect = 0.91
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEH 26
K +C C +F +L H
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVH 99
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.5 bits (105), Expect = 7e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
G ++CS+C + F Q+ L +H R H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 34.1 bits (78), Expect = 0.003
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
GE P C C + F H R H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 33.7 bits (77), Expect = 0.005
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 314 AHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ G P+ C C++V T R+ L+ H R
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 31.4 bits (71), Expect = 0.029
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVH 291
FKC+KCD+VF L +H+ H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
Score = 29.8 bits (67), Expect = 0.12
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKP 324
P++C +C + L H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 29.4 bits (66), Expect = 0.16
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 HFRIHTGEKPFTCNICSRKFTTYSQVRR 53
GE PF C+ C R FT + + +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQ 30
Score = 24.8 bits (54), Expect = 6.4
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+ G P C C + FT + ++ H + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTHARK 38
Score = 24.8 bits (54), Expect = 7.0
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQP 240
F C KC++V++ + L +H + +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 45.0 bits (106), Expect = 2e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 10 CSQCPKAFNQKGNLKEHFRIHTGEKPFTC 38
C + K+F K L H R+HTGEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 38.8 bits (90), Expect = 3e-04
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRR----HKGEKPVTCTFENCT---ETFVESWAMR 198
+ + C + F + H+ + C +E C ++F + +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 199 KHVRT 203
H+R
Sbjct: 80 NHIRV 84
Score = 38.4 bits (89), Expect = 3e-04
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 269 FKCTKCDKVFQHIQLLNRH-QLVHMDTRPYQ--------CPQCPMAYKTNISLSAHLMKH 319
CD+ F + L H + H+ CP+ ++K L H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 320 TGAKPYVC 327
TG K
Sbjct: 86 TGEKSGPS 93
Score = 35.3 bits (81), Expect = 0.003
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHF-RIHTGEKPFTCNICSRK 44
+ C + F+ L H H G ++C +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Score = 34.6 bits (79), Expect = 0.007
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 22/103 (21%)
Query: 199 KHVRTCH-NKPTVNRFPCDKCEKVYSCASSLTKHMKAR-LGRQPVSCDICHKEFTHPSSV 256
K +C P C++ +S L H+ +G + +C+ E
Sbjct: 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE------- 63
Query: 257 LYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
+C + K F+ L H VH +
Sbjct: 64 -------------ECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 33.0 bits (75), Expect = 0.030
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 142 HLKR-HTGEKPHT--------CELCSKGFLSAESYKCHLRRHKGEKPVTCT 183
H+ H G C K F + H+R H GEK +
Sbjct: 44 HVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 31.5 bits (71), Expect = 0.086
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 290 VHMDTRPYQCPQCPMAYKTNISLSAHLMK-HTGAKPYV--------CEICNKVLTHRSSL 340
+ C + T L H+ H G C K + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 341 ISHYR 345
++H R
Sbjct: 79 VNHIR 83
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 44.2 bits (103), Expect = 7e-06
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 257 LYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHL 316
L +Q I K + L + CP C M + +++SL H+
Sbjct: 35 LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI 94
Query: 317 MKHTGAKPYVCEICNKVLTHRSSLISHYR 345
VC +C K T S + H
Sbjct: 95 RYTE--HTKVCPVCKKEFTSTDSALDHVC 121
Score = 43.0 bits (100), Expect = 1e-05
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 230 KHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQL 289
+ RL R V I + + SS LY + F C C F L +H
Sbjct: 36 TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIR 95
Query: 290 VHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
CP C + + S H+ K
Sbjct: 96 YT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 38.4 bits (88), Expect = 6e-04
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 139 HKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMR 198
+ L C LC F S+ S K H+R E C C + F + +
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSAL 117
Query: 199 KHVRTCHN 206
HV HN
Sbjct: 118 DHVCKKHN 125
Score = 38.4 bits (88), Expect = 6e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+ I Q+ C C F+ +LK+H R E C +C ++FT+
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALD 118
Score = 38.0 bits (87), Expect = 8e-04
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 11/128 (8%)
Query: 138 GHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAM 197
G K +L H G + + +R + + T + + ES +
Sbjct: 9 GSKKYLSNHKGIF---IHVTLEELKRYHQLTPEQKRL--IRAIVKTLIHNPQLLDESSYL 63
Query: 198 RKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVL 257
+ + + F C C +S + SL +H+ R C +C KEFT S L
Sbjct: 64 YRLLASKAISQ----FVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSAL 117
Query: 258 YHKQSIHN 265
H HN
Sbjct: 118 DHVCKKHN 125
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 40.4 bits (94), Expect = 4e-05
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 225 ASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLL 284
+ S K K LG + C C F S++ K C KC K L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP-------MCEKCRKDSCQEAAL 55
Query: 285 NRHQLVHMDTRPY 297
N+ + +
Sbjct: 56 NKDEGNESGKKTS 68
Score = 39.3 bits (91), Expect = 1e-04
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 1 WHQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPF 36
K C +C K Q+ L + +G+K
Sbjct: 33 TLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 38.9 bits (90), Expect = 1e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 284 LNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+ Q +H+ R +C +C + + +LS K +CE C K ++L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 344 YR 345
Sbjct: 59 EG 60
Score = 38.5 bits (89), Expect = 2e-04
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 254 SSVLYHKQSIHNNE-IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISL 312
S +Q IH + KC+KC +F L+R + C +C +L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55
Query: 313 SAHLMKHTGAKPY 325
+ +G K
Sbjct: 56 NKDEGNESGKKTS 68
Score = 34.6 bits (79), Expect = 0.004
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFT 46
H G + +CS+C F ++ + K C C +
Sbjct: 13 HLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSC 50
Score = 34.6 bits (79), Expect = 0.004
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
K H G++ C C F+ + K C E C + + A+ K
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMC--EKCRKDSCQEAALNKDE 59
Query: 202 RT 203
Sbjct: 60 GN 61
Score = 34.3 bits (78), Expect = 0.005
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 21 GNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
G+ + +IH G++ C+ C F S + R
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR 36
Score = 31.9 bits (72), Expect = 0.039
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 311 SLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
S H G + C C + RS+L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 31.2 bits (70), Expect = 0.083
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 163 SAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVY 222
S+ S + H G++ C+ C F+ + + C+KC K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCS--KCGIIFIRRSTLSRR----------KTPMCEKCRKDS 49
Query: 223 SCASSLTKHMKARLGRQP 240
++L K G++
Sbjct: 50 CQEAALNKDEGNESGKKT 67
Score = 30.4 bits (68), Expect = 0.15
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKP 179
+ K CE C K + G+K
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKT 67
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.4 bits (96), Expect = 4e-05
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 225 ASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLL 284
SS + ++ C +C+ + + H++ N C C F +L
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELK 58
Query: 285 NRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK 318
H+ + + C +C +K++ S+ H ++
Sbjct: 59 QEHE-SKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 40.7 bits (94), Expect = 6e-05
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 212 RFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKC 271
+ C C S H RL R C C F P + +S + C
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHE--RLCRNAAVCPYCSLRFFSPE-LKQEHESKCEYKKLTC 72
Query: 272 TKCDKVFQHIQLLNRHQ 288
+C + F+ + RHQ
Sbjct: 73 LECMRTFKSSFSIWRHQ 89
Score = 36.8 bits (84), Expect = 0.002
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 259 HKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK 318
+ N E+++C C+ + H+ + + CP C + + + H K
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESK 64
Query: 319 HTGAKPYVCEICNKVLTHRSSLISH 343
K C C + S+ H
Sbjct: 65 CEY-KKLTCLECMRTFKSSFSIWRH 88
Score = 34.5 bits (78), Expect = 0.009
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 175 KGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKA 234
+ ++ C C H R C N C C + +H
Sbjct: 12 ENKEVYQCRL--CNAKLSSLLEQGSHERLCRN-----AAVCPYCSLRFFSPELKQEHESK 64
Query: 235 RLGRQPVSCDICHKEFTHPSSVLYHKQSIHN 265
++ ++C C + F S+ H+ +HN
Sbjct: 65 CEYKK-LTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 33.3 bits (75), Expect = 0.026
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 8 YQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
C C F +EH K TC C R F + + R
Sbjct: 43 AVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWR 87
Score = 31.4 bits (70), Expect = 0.13
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
++ + C LC+ S H R + C + C+ F ++H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPY--CSLRFFSPELKQEHE 62
Query: 202 RTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKA 234
C K + C +C + + + S+ +H
Sbjct: 63 SKCEYK----KLTCLECMRTFKSSFSIWRHQVE 91
Score = 30.6 bits (68), Expect = 0.24
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 154 CELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTV 210
C CS F S E + H K +TC C TF S+++ +H HN+ +
Sbjct: 45 CPYCSLRFFSPELKQEH-ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 26.8 bits (58), Expect = 5.5
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 3 QGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR 53
+ + YQC C + H R+ C CS +F + +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE 60
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 38.1 bits (89), Expect = 1e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 142 HLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
+ TG KP C C + F ++ H +RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 37.7 bits (88), Expect = 2e-04
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 26 HFRIHTGEKPFTCNICSRKFT 46
R TG KPF C C R F+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFS 22
Score = 33.5 bits (77), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIH 30
GIK +QC C ++F++ +L H + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.9 bits (73), Expect = 0.019
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 315 HLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
TG KP+ C C++ + L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 28.1 bits (63), Expect = 0.44
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRT 203
R G KP C +C +F S + H +
Sbjct: 2 STRGSTGIKPFQCP--DCDRSFSRSDHLALHRKR 33
Score = 25.8 bits (57), Expect = 2.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 287 HQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
+P+QCP C ++ S S HL H
Sbjct: 2 STRGSTGIKPFQCPDCDRSF----SRSDHLALH 30
Score = 25.4 bits (56), Expect = 4.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 212 RFPCDKCEKVYSCASSLTKHMK 233
F C C++ +S + L H K
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRK 32
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 36.7 bits (84), Expect = 3e-04
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+K Y C C + F G L+ H RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.8 bits (61), Expect = 0.54
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEK 178
KP+ C C + F + + H+R H GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.1 bits (54), Expect = 4.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+PY C C + +L H+ HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+ + C C +AF ++ +LK H+R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 32.3 bits (74), Expect = 0.010
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEK 178
+ CE+C++ F E K H R H EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.7 bits (78), Expect = 0.003
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 6 KQYQCS--QCPKAFNQKGNLKEHFRIHTGEK 34
+ + C+ C K F + L+ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.3 bits (56), Expect = 3.1
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 150 KPHTC--ELCSKGFLSAESYKCHLRRHKGEK 178
+P C C K F ++ + H R H GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 24.9 bits (55), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 178 KPVTCTFENCTETFVESWAMRKHVRT 203
+P CT+ C + F S +++H RT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 32.7 bits (75), Expect = 0.008
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 6 KQYQCS--QCPKAFNQKGNLKEHFRIHTGEK 34
KQ+ C C K + + +L+ H R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.9 bits (65), Expect = 0.23
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 147 TGEKPHTCEL--CSKGFLSAESYKCHLRRHKGEK 178
+K H C + C K + + HLR H GE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.009
Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 44/149 (29%)
Query: 124 GWWFKSKSSHKIYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLR------RHKGE 177
+++ ++GH L H L FL R RH
Sbjct: 471 QYFYS-------HIGHHLKNIEHPERM----TLFRMVFLD-------FRFLEQKIRHDS- 511
Query: 178 KPVTCTFENCTETFVESWAMRKHVRTCHNKPTVNRFPCDKCEKVYSCASSL--TKHMKAR 235
+ T + + ++ C N P R + + +L +K+
Sbjct: 512 -TAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKY---- 564
Query: 236 LGRQPVSCDICHKEFTHPSSVLY---HKQ 261
D+ ++ HKQ
Sbjct: 565 -------TDLLRIALMAEDEAIFEEAHKQ 586
Score = 32.1 bits (72), Expect = 0.35
Identities = 57/411 (13%), Positives = 110/411 (26%), Gaps = 122/411 (29%)
Query: 1 WHQGIKQYQCSQCPKAFNQKGN---LKEHFRIHTGEKPF-TC-----NICSRKFTTYSQV 51
+Q I S+ + N K ++ R KP+ C N+ + K
Sbjct: 206 LYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK------A 258
Query: 52 RRSSNTSARNVLKLSTRKGTSRSISESIRERNRSPVIYVAESSPLILRLGGILFI-FTNL 110
+ N S + +L L+TR + +++ + + + S L L + + +
Sbjct: 259 WNAFNLSCK-IL-LTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 111 SGALVNAFYFGSGGWWFKSKSSHKIYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCH 170
++ + L + AES +
Sbjct: 314 R----------------PQDLPREVLTTNPRRLS-----------------IIAESIRDG 340
Query: 171 LRR-----HKGEKPVTCTFENCTET---------------FVES-----------WA--- 196
L H +T E+ F S W
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 197 ---MRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHM--KARLGRQPVSCDICHKEFT 251
+ V H V + P + + S L + + L R V K F
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 252 HPSSVL------------YHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQC 299
+ +H ++I + E + VF + L + ++ H D+ +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR--MVFLDFRFLEQ-KIRH-DSTAWNA 516
Query: 300 PQCPMA-------YKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISH 343
+ YK I + + V I + + +LI
Sbjct: 517 SGSILNTLQQLKFYKPYICDN-----DPKYERLVNAILDFLPKIEENLICS 562
Score = 27.9 bits (61), Expect = 6.9
Identities = 50/294 (17%), Positives = 80/294 (27%), Gaps = 97/294 (32%)
Query: 75 ISESIRERNRSP----VIYVAESSPL-----------ILRLGGILFIFTNLSGALVNAFY 119
+ I+ R P +Y+ + L + RL L + L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 120 F-----GSGGWW----------FKSKSSHKIY---LGH--------KLHLKRHTGEKPHT 153
GSG W + K KI+ L + ++ K P+
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 154 CELCSKGF---LSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTV 210
L S + LRR KP +ENC V + +V+ N
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC--LLV----LL-NVQ---NAKAW 259
Query: 211 NRFPCD-KCEK--VYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
N F + C K + + +T + A H H S L +
Sbjct: 260 NAF--NLSC-KILLTTRFKQVTDFLSAAT--------TTHISLDHHSMTLTPDEVK---S 305
Query: 268 IF-KCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQC-PMAYKTNISLSAHLMKH 319
+ K C Q L P + P +S+ A ++
Sbjct: 306 LLLKYLDCR-----PQDL-----------PREVLTTNPRR----LSIIAESIRD 339
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.5 bits (73), Expect = 0.011
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K Y+C QC A K NL H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.3 bits (70), Expect = 0.025
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+PY+CPQC A +L+ HL KHTG K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.6 bits (55), Expect = 2.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
+ KP+ C CS + HLR+H GEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.4 bits (83), Expect = 0.015
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIH 30
YQC C +L H H
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.4 bits (83), Expect = 0.016
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 139 HKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCT---FENCTETFVESW 195
+ + C +CS S H+ H +T T + F+ SW
Sbjct: 168 RVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSW 227
Query: 196 AMRKHVRTCHNKPTV 210
++ V
Sbjct: 228 ---QNHPIVQVSADV 239
Score = 36.0 bits (82), Expect = 0.019
Identities = 11/104 (10%), Positives = 27/104 (25%), Gaps = 6/104 (5%)
Query: 9 QCSQCPKAFNQKGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRRSSNTSARNVLKLSTR 68
++ + + C++CS + + + + T
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
Query: 69 KGTSRSISESI------RERNRSPVIYVAESSPLILRLGGILFI 106
R I+E I S + +++ L+ L
Sbjct: 214 SEIQRHITEFISSWQNHPIVQVSADVENKKTAQLLHADTPRLVT 257
Score = 31.7 bits (71), Expect = 0.38
Identities = 7/52 (13%), Positives = 13/52 (25%)
Query: 294 TRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHYR 345
+ + + Y C +C+ VL L +H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVA 201
Score = 31.4 bits (70), Expect = 0.59
Identities = 6/56 (10%), Positives = 15/56 (26%)
Query: 239 QPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMDT 294
+ + + + + + ++C C V L+ H H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 29.8 bits (66), Expect = 1.6
Identities = 14/116 (12%), Positives = 24/116 (20%), Gaps = 13/116 (11%)
Query: 204 CHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSI 263
++ T + K S + L R + S+
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMST-------- 152
Query: 264 HNNEIFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
+ YQC C + + L AH+ H
Sbjct: 153 -----RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.4 bits (75), Expect = 0.020
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 212 RFPCDKCEKV-YSCASSLTKHMKA-RLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
C C V L KHM+ + + + C C K+F + + YH + H+ +
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 32.6 bits (73), Expect = 0.035
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 172 RRHKGEKPVTCTFENCTETFVESWA-MRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTK 230
R C C ++ ++KH+ C + C C K + + L
Sbjct: 17 RAIHERGEAVC--PTCNVVTRKTLVGLKKHMEVCQK--LQDALKCQHCRKQFKSKAGLNY 72
Query: 231 HMKARLGRQPVSCDICHKEFTHPSS 255
H A +P + + PSS
Sbjct: 73 HTMAEHSAKPSDAEASEGGESGPSS 97
Score = 30.7 bits (68), Expect = 0.19
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 260 KQSIHNNEIFKCTKCDKVFQH-IQLLNRHQLV-HMDTRPYQCPQCPMAYKTNISLSAHLM 317
+++IH C C+ V + + L +H V +C C +K+ L+ H M
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 318 KHTGAKP 324
AKP
Sbjct: 76 AEHSAKP 82
Score = 26.8 bits (58), Expect = 4.4
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 132 SHKIYLGHKLHLKR-HTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTET 190
+ K +G K H++ + C+ C K F S H KP E+
Sbjct: 34 TRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGES 93
Query: 191 FVES 194
S
Sbjct: 94 GPSS 97
Score = 26.8 bits (58), Expect = 4.6
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 297 YQCPQCPMA-YKTNISLSAHL-MKHTGAKPYVCEICNKVLTHRSSLISHYR 345
CP C + KT + L H+ + C+ C K ++ L H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 25.7 bits (55), Expect = 9.4
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 1 WHQGIKQYQCSQCPK----AFNQKGNLKEHFRI-HTGEKPFTCNICSRKFTTYSQVR 52
W + I + + CP LK+H + + C C ++F + + +
Sbjct: 15 WQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71
Score = 25.7 bits (55), Expect = 9.7
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEKP 35
+ +C C K F K L H KP
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.031
Identities = 62/385 (16%), Positives = 113/385 (29%), Gaps = 146/385 (37%)
Query: 15 KAFNQ---KGNLKEHFRIHTGEKPFTCNICSRKFTTYSQVRR--SSNTSARNVLKLSTRK 69
F +GN IH + TT + + + +AR + K K
Sbjct: 89 TEFENCYLEGN-----DIHA----LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 70 GTSRSISESIRERNRSPVI-----------YVAE-------SSPLILRLGGILFIFTNLS 111
++ ++ ++ E N + ++ Y E L+ L I F LS
Sbjct: 140 KSNSALFRAVGEGN-AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL--IKFSAETLS 196
Query: 112 GALVNAFYFGSGGWWFKSKSSHKIYLGHKLHLK---RHTGEKPHTCELCSK-------GF 161
L+ + + K++ L++ + P L S G
Sbjct: 197 E-LIRT-----------TLDAEKVF-TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 162 LSAESYKCHLRRHKGEKPVTCTFENCTETFVESWAMRKHVR--TCHNK-----------P 208
+ Y VT T +R +++ T H++
Sbjct: 244 IQLAHYV-----------VTAKLLGFTPG-----ELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 209 TVNRFPCDKCEKVYSCASSLTKHMKARLG-RQPVSCDICHKEFTH---PSSVLYHKQSIH 264
+ F + + +G R C++ + + P S+L + S+
Sbjct: 288 SWESF--------FVSVRKAITVL-FFIGVR-------CYEAYPNTSLPPSIL--EDSLE 329
Query: 265 NNE--------IFKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHL 316
NNE I T+ ++V ++ N H P + ISL
Sbjct: 330 NNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHL--------------PAGKQVEISL---- 370
Query: 317 MKHTGAKPYVCEICNKVLT-HRSSL 340
GAK N V++ SL
Sbjct: 371 --VNGAK-------NLVVSGPPQSL 386
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.0 bits (69), Expect = 0.043
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K + C C K F K +L+ H RIHT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 0.97
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEK 178
K TCE C+K F S + HLR H EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.8 bits (53), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 320 TGAKPYVCEICNKVLTHRSSLISHYR 345
+ K + CE CNKV + SL +H R
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLR 30
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.047
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K +QC +C + F Q +L EH +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.9 bits (56), Expect = 3.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+ +QC +C + +SL H + H G K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.2 bits (54), Expect = 6.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 147 TGEKPHTCELCSKGFLSAESYKCHLRRHKGEK 178
+ EK H C C + F S H H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.5 bits (73), Expect = 0.047
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 212 RFPCDKCEKV-YSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNN 266
C C+ V L KHM+ ++ +C C K+ + + YH + HN+
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Score = 31.0 bits (69), Expect = 0.16
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 260 KQSIHNNEIFKCTKCDKV-FQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMK 318
I + C C V + I+ L +H + C C ++ + H+M
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMA 84
Query: 319 HTGAKP 324
+ + P
Sbjct: 85 NHNSLP 90
Score = 27.9 bits (61), Expect = 1.6
Identities = 16/80 (20%), Positives = 28/80 (35%)
Query: 217 KCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDK 276
K VY+ S + + + VSC C L E+F C C K
Sbjct: 11 KEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGK 70
Query: 277 VFQHIQLLNRHQLVHMDTRP 296
+ + + H + + ++ P
Sbjct: 71 QLRSLAGMKYHVMANHNSLP 90
Score = 27.1 bits (59), Expect = 2.7
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 197 MRKHVRTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCD 244
++KH+ C + F C C K + + H+ A P
Sbjct: 51 LKKHMENCKQEM----FTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS 94
Score = 26.8 bits (58), Expect = 4.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 286 RHQLVHMDTRPYQCPQC-PMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHRSSLISHY 344
+ L +D CP C + KT L H M++ + + C C K L + + H
Sbjct: 24 QWYLEIVDKGSVSCPTCQAVGRKTIEGLKKH-MENCKQEMFTCHHCGKQLRSLAGMKYHV 82
Query: 345 R 345
Sbjct: 83 M 83
Score = 25.6 bits (55), Expect = 9.8
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 132 SHKIYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPV 180
K G K H++ ++ TC C K S K H+ + P
Sbjct: 44 GRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 30.5 bits (68), Expect = 0.049
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEK 178
KP C +C K F A S H+R+H GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.6 bits (63), Expect = 0.23
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K QC C KAF Q +L H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.7 bits (58), Expect = 1.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KP C +C K T SSLI+H R
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVR 23
Score = 24.7 bits (53), Expect = 5.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+P QC C A+ SL AH+ +HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.11
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 175 KGEKPVTCTFENCTETFVESWAMRKHVRT 203
+K C F CT+TF + +R H++T
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 29.1 bits (65), Expect = 0.20
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 6 KQYQC--SQCPKAFNQKGNLKEHFRIHTGEK 34
K ++C C K F ++ N++ H + H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.14
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 212 RFPCDKCEKVYSCASSLTKHMK 233
F C+KCEK +SC+ LT+H +
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHER 33
Score = 29.0 bits (64), Expect = 0.21
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHT 31
Q K ++C++C K F+ L +H RIHT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.2 bits (54), Expect = 6.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVH 291
FKC KC+K F + L +H+ +H
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIH 35
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.5 bits (65), Expect = 0.18
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 291 HMDTRPYQCPQCPMAYKTNISLSAHLMKHTGA 322
+PY CP C + +K +S H+ H G+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 28.0 bits (61), Expect = 0.54
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTG 32
G K Y C C F +K + H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.2 bits (59), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRHKG 176
+GEKP++C +C F + H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 5.1
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 30 HTGEKPFTCNICSRKFTTYSQVRRSSNTSARNVLK 64
+GEKP++C +C +F ++ + +V K
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.0 bits (64), Expect = 0.18
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 5 IKQYQCSQCPKAFNQKGNLKEHFRIHTG 32
++ Y CS C K F+ K ++ H+R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.0 bits (64), Expect = 0.19
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHT 31
G + + C C AF K N H ++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.4 bits (60), Expect = 0.64
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 30 HTGEKPFTCNICSRKFTTYSQVRR 53
+G++PF C IC FTT + R
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCAR 25
Score = 26.3 bits (57), Expect = 1.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 146 HTGEKPHTCELCSKGFLSAESYKCHLRRH 174
+G++P C +C F + + HL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.5 bits (55), Expect = 3.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 319 HTGAKPYVCEICNKVLTHRSSLISHYR 345
+G +P+VC IC T +++ H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.5 bits (68), Expect = 0.21
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 286 RHQLVHMDTRPYQCPQCPMAYKTNISLSAHL-MKHTGAK---PYVCEICNKVLTHRSSLI 341
+Q Y+C C + H+ +H YVC CN + +L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 342 SH 343
H
Sbjct: 68 EH 69
Score = 28.2 bits (62), Expect = 1.6
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 254 SSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRH-QLVHMDTR---PYQCPQCPMAYKTN 309
+++Q+ ++C C + + H H + Y C +C K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 310 ISLSAHLMK-HTGAKPYVCEI 329
+LS H +K H G + + +
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
Score = 27.4 bits (60), Expect = 2.6
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 170 HLRRHKGEKPVTCTFENCTETFVESWAMRKHVRTCHNKPTVN-RFPCDKCEKVYSCASSL 228
+ + K E C + CT + HV + H +N + C +C + +L
Sbjct: 9 NQQNKKVEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 229 TKH 231
++H
Sbjct: 67 SEH 69
Score = 27.4 bits (60), Expect = 3.0
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 226 SSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNN----EIFKCTKCDKVFQHI 281
+ + + C C + + +H S H N + C +C+ + +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 282 QLLNRHQ 288
L+ H
Sbjct: 64 DALSEHN 70
Score = 26.3 bits (57), Expect = 6.6
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 8 YQCSQCPKAFNQKGNLKEH-FRIHTGEKPFTCNICSR 43
Y C +C + L EH + H GE+ F + R
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR 87
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.36
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 18/42 (42%)
Query: 77 ESIRERNRSPVIYVAESSPLILRLGGILFIFTNLSGAL-VNA 117
+++++ S +Y +S+P AL + A
Sbjct: 20 QALKKLQASLKLYADDSAP-----------------ALAIKA 44
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.41
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 2 HQGIKQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
+G K+ Q + + + +L+ + +
Sbjct: 203 ARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.0 bits (64), Expect = 1.7
Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 7/64 (10%)
Query: 213 FPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCT 272
+ + K S T H G + + + + +P +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVL 233
Query: 273 KCDK 276
+ K
Sbjct: 234 RQGK 237
Score = 28.6 bits (63), Expect = 2.6
Identities = 6/49 (12%), Positives = 15/49 (30%)
Query: 243 CDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVH 291
+ K S H+ + + K ++V + + L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.5 bits (60), Expect = 5.8
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 135 IYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRH 174
+H GEK E + + E + +
Sbjct: 192 SMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 26.7 bits (58), Expect = 9.4
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 203 TCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQ 239
+ R +K E+V L + + RQ
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.4 bits (68), Expect = 0.47
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 143 LKRHTGEKPHTCELCSKGFLSAESYKCH-LRRHKGEKPVTCTFENCTETFVESWAMRKHV 201
+ + + H C + ++ L + + + +R V C E C +E + H
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHK-MELRHLEDHQ 103
Query: 202 RTCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHP 253
C C +C++ + + H+ R+ VSCD C
Sbjct: 104 AHCEFALM----DCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE 150
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 0.60
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 9 QCSQCPKAFNQKGNLKEHFRIHTGE 33
+C +C K F L EH +H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
Score = 26.0 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 266 NEIFKCTKCDKVFQHIQLLNRHQLVH 291
+C +C K+F+H LL HQ +H
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALH 35
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.5 bits (65), Expect = 0.78
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFE-NCTETFVESWAMRKHVRTCHNKP 208
C++CS +S H + K V N E V + + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 209 TVNRFPCDKCEKVYSCASSLTKHMKAR 235
++ C C +S H +
Sbjct: 91 DRSKC-CPVCNMTFSSPVVAESHYIGK 116
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.88
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRR----HKGEKPVTCTFENCTETFVESWA 196
+ C +C+ F + + HLR T N +F+ +W
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSFLTAWD 165
Score = 29.0 bits (64), Expect = 3.1
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRI-HT--GEKPFTCNICSRKFTTYSQVRRSSNTSARNV 62
Y C+ C F+ L EH R H + + ++ + +V
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSFLTAWDDIRILSPDV 174
Query: 63 LKLSTRKGTSRSISESIR 80
S +++
Sbjct: 175 SSKSLSAYLDSAVANGPE 192
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 29.5 bits (66), Expect = 0.97
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 271 CTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKPYVCEIC 330
C +C + H + + Q Y CPQC L+ K E
Sbjct: 26 CDRCQNWY-HGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTPLTEKD-------YEGL 77
Query: 331 NKVLT 335
+VL
Sbjct: 78 KRVLR 82
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 237 GRQPVSCDICHKEFTHPSSVLYHKQSIHN---NEIFKCTKCDKVFQHIQLLN 285
GRQ C C + F H + H + + + + +I+L+N
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLE-FYGYIKLIN 62
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.7
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 299 CPQCPMAYKTNISLSAHLMKHTGAKPYVCEICNKVLTHR 337
CP+C Y I G VC +C VL+ +
Sbjct: 24 CPECK-VYPPKIVERFS----EGD--VVCALCGLVLSDK 55
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
K ++CS C A K NLK H H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 25.2 bits (54), Expect = 4.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 295 RPYQCPQCPMAYKTNISLSAHLMKHTGAK 323
+P++C C A ++ +L AH+ +H+ K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 29.4 bits (66), Expect = 2.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 243 CDICHKEFTHPSSVLYHKQSIHNNEIFKCTKC 274
C+ C +E+ P +H Q + C C
Sbjct: 164 CEKCSREYHDPHDRRFHAQPV------ACFDC 189
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 28.8 bits (65), Expect = 2.7
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 269 FKCTKCDKVFQHIQLLNRHQLVHMDTRPYQCPQCPM-AYKTNISLS 313
F+C C + Q N T P C +C +++ S
Sbjct: 135 FECRGCMRHHAVTQSTNM------ITEPSLCSECGGRSFRLLQDES 174
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.9 bits (56), Expect = 3.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPY C+IC K +R L HY
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
Score = 24.7 bits (53), Expect = 7.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 239 QPVSCDICHKEFTHPSSVLYHKQSIHNNE 267
+P +CDIC K + + + YH H E
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAE 34
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.5 bits (56), Expect = 3.2
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRHKGEK 178
+ +TC C + F SA++ H+ H+ ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 28.6 bits (64), Expect = 3.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 243 CDICHKEFTHPSSVLYHKQSI 263
C C KE+ P +H Q +
Sbjct: 70 CPACDKEYRDPLDRRFHAQPV 90
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase,
bacterial cell WALL; 2.50A {Escherichia coli}
Length = 491
Score = 28.3 bits (64), Expect = 3.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 71 TSRSISESIRERNRSPVIYVAESSPLILRLGGIL 104
SRS+ +IR R + I V + + + L +L
Sbjct: 421 DSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVL 454
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA
ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1
c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Length = 475
Score = 28.3 bits (64), Expect = 4.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 71 TSRSISESIRERNRSPVIYVAESSPLILRLGGIL 104
S+S+ SIR + I V+++S L L I+
Sbjct: 415 DSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQII 448
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.8 bits (54), Expect = 4.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 34 KPFTCNICSRKFT 46
K + C +C+R FT
Sbjct: 1 KAYACGLCNRAFT 13
Score = 24.4 bits (53), Expect = 7.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 323 KPYVCEICNKVLTHRSSLISH 343
K Y C +CN+ T R LI H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 28.0 bits (62), Expect = 5.0
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 13/121 (10%)
Query: 218 CEKVYSCASSLTKHMKARLGRQPVSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKV 277
++ Y C S + +E S + + C C
Sbjct: 325 RDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCD 384
Query: 278 FQHIQLLNRHQLVHMDTRPYQCPQCPMAYKTNISLSAHLMKHTGAKP-YVCEICNKVLTH 336
F + R + C C N S + + +K+ + VC+ C L
Sbjct: 385 F------------SLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELKK 432
Query: 337 R 337
R
Sbjct: 433 R 433
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
K + C C K F KG LK H +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 24.4 bits (52), Expect = 9.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 149 EKPHTCELCSKGFLSAESYKCHLRRHKGE 177
K H C++C K F S + K H H +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.8 bits (56), Expect = 5.2
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 157 CSKGFLSAESYKCHL-RRHKGEK------PVTCTFENCTETFVESWAMRKHVRTCH 205
C + S + HL + H + P+ C +E+C ++ ++ H+ H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 24.7 bits (53), Expect = 6.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 323 KPYVCEICNKVLTHRSSLISHYR 345
KPYVCE C K S L +H R
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
Score = 24.3 bits (52), Expect = 8.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 150 KPHTCELCSKGFLSAESYKCHLRRH 174
KP+ CE C K F+ + H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.5 bits (53), Expect = 6.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 7 QYQCSQCPKAFNQKGNLKEHFRIHTGEK 34
++ C +CPK F + +L H +H +K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 24.6 bits (53), Expect = 7.5
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 177 EKPVTCTFENCTETFVESWAMRKHVRTCHNKPT 209
++P +C C + FV + + +H ++ H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKS-HQEKA 32
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 27.5 bits (59), Expect = 7.8
Identities = 23/151 (15%), Positives = 39/151 (25%), Gaps = 13/151 (8%)
Query: 188 TETFVESWAMRKHVR-------TCHNKPTVNRFPCDKCEKVYSCASSLTKHMKARLGRQP 240
T +V +W H + + ++ E L + +
Sbjct: 87 TPVWVRAWKRSTHANLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKET----LKE 142
Query: 241 VSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRHQLVHMD-TRPYQC 299
V C CH + H + I C C + R +V + P
Sbjct: 143 VGCIDCHVDVNKKDKA-DHTKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGR 201
Query: 300 PQCPMAYKTNISLSAHLMKHTGAKPYVCEIC 330
P + Y NI + C +C
Sbjct: 202 PSHALDYTANIETTVWATMPQREVAEGCTMC 232
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 27.3 bits (60), Expect = 8.1
Identities = 9/57 (15%), Positives = 14/57 (24%)
Query: 135 IYLGHKLHLKRHTGEKPHTCELCSKGFLSAESYKCHLRRHKGEKPVTCTFENCTETF 191
+ L L C G K ++G + + E TF
Sbjct: 165 FEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTF 221
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 26.0 bits (56), Expect = 8.2
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 290 VHMDTRPYQCPQCPMAYKTNISLSAHLMKH 319
+ YQC C ++ L++HL H
Sbjct: 19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIH 48
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 25.7 bits (56), Expect = 8.2
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 241 VSCDICHKEFTHPSSVLYHKQSIHNNEIFKCTKCDKVFQHIQLLNRH 287
+ C +C ++ H S V +++ + +I+ C C+ VF + N H
Sbjct: 28 IECGLCQ-DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKNWH 73
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.5 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 6 KQYQCSQCPKAFNQKGNLKEHFRIHTGE 33
K+Y+CS+C FN + +L +H + H +
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHAAK 38
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.1 bits (59), Expect = 8.8
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 149 EKPHTCELCSKGFLSAESYKCHL--RRHK 175
K C CS+ F ++ ++ HL + HK
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHLVGKIHK 318
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.433
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,941,060
Number of extensions: 271522
Number of successful extensions: 3347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2636
Number of HSP's successfully gapped: 1383
Length of query: 345
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 251
Effective length of database: 4,077,219
Effective search space: 1023381969
Effective search space used: 1023381969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.7 bits)