RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8794
(386 letters)
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 182 bits (465), Expect = 2e-55
Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 12/194 (6%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
VA+VTG + GIG +V+DL R + G V +T + T G AAV Q++ +
Sbjct: 6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS---------- 55
Query: 68 EKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEVN 127
+F+++D+ + + + +++GG+DVL+NNA + A + TM+ N
Sbjct: 56 --PRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTN 113
Query: 128 YFGLLRICHFLFPLLRQSARVIHVTSQCGHVSQIRNGTELQEKFLNDTLTEEELTQLMRQ 187
+FG +C L PL++ RV++V+S + ELQ+KF ++T+TEEEL LM +
Sbjct: 114 FFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNK 173
Query: 188 YVEDYQQGRHLEKG 201
+VED ++G H ++G
Sbjct: 174 FVEDTKKGVHQKEG 187
Score = 109 bits (274), Expect = 1e-27
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 40/202 (19%)
Query: 206 IQVHQSGVDVLINNAAVHLD------------------YAGH--LTK------------- 232
++ G+DVL+NNA + + G +
Sbjct: 76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVV 135
Query: 233 -----SEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQQGRHLEKGWPESPYTV 287
P LQ++F ++T+TEEEL LM+++VED ++G H ++GWP S Y V
Sbjct: 136 NVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGV 195
Query: 288 SKIGVSKLAMVQQNQHFQNGTAD-LSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLAS 346
+KIGV+ L+ + + + D + +NA PG+ +T M+ +E + +YLA
Sbjct: 196 TKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLAL 255
Query: 347 IQPYQPEPRGRLIWNNKEEQAW 368
+ P P G+ + K + W
Sbjct: 256 LPPDAEGPHGQF-VSEKRVEQW 276
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 155 bits (394), Expect = 8e-45
Identities = 71/365 (19%), Positives = 137/365 (37%), Gaps = 71/365 (19%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
A+VTG + GIG+ + + L V +TC + T G AV+++K
Sbjct: 14 CAVVTGGNKGIGFEICKQLSS-NGIMVVLTCRDVTKGHEAVEKLKNSN-----------H 61
Query: 68 EKIKFYRVDVSNESQ-VENFTQHIAQQHGGVDVLINNAAVHL-DYAGHLTKSEKLNRTME 125
E + F+++DV++ + + I G +D+L+NNA V K+ + +
Sbjct: 62 ENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGED 121
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVTSQCGHVSQIRNGTELQEKFLNDTLTEEELTQLM 185
+ L+ ++ + + + +T+++
Sbjct: 122 SEELVKIYEKPEAQELMSETYELAEECLKINYNGVKS------------------VTEVL 163
Query: 186 RQYVEDYQQGRHLEKGKYPGIQVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPAL 245
P +Q+ S V ++++ L Y + E AL
Sbjct: 164 -----------------IPLLQLSDSPRIVNVSSSTGSLKYVSN------------ETAL 194
Query: 246 QERFLNDTLTEEELTQLMHQYVEDYQQGRHLEKGWPE--SPYTVSKIGVSKLAMVQQNQH 303
+ D LTEE + +++ ++D+++ GWP + YT SK ++ V N+
Sbjct: 195 EILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLANKI 254
Query: 304 FQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRLIWNNK 363
VN V PG KT+M+ G A+E + ++ +A P G ++
Sbjct: 255 -----PKFQVNCVCPGLVKTEMNYGIGNYTAEEGAEHVVRIALFPD--DGPSGFF-YDCS 306
Query: 364 EEQAW 368
E A+
Sbjct: 307 ELSAF 311
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 97.8 bits (244), Expect = 8e-24
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 32/168 (19%)
Query: 6 PSVAIVTGASTGIGYNVVQDLV-RFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKR 64
P +VTGA+ GIG +VQ LV + T +
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD------------ 50
Query: 65 YYQEKIKFYRVDVSNESQVENFTQHIAQQHG--GVDVLINNAAVHLDYAGHL-TKSEKLN 121
++ + V+ + ++ F + + G G+ +LINNA V L Y + +
Sbjct: 51 ---SRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIA 107
Query: 122 RTMEVNYFGLLRICHFLFPLLRQS-------------ARVIHVTSQCG 156
++VN ++ + L PLL+ + A VI ++S G
Sbjct: 108 EQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155
Score = 50.0 bits (120), Expect = 3e-07
Identities = 27/185 (14%), Positives = 61/185 (32%), Gaps = 33/185 (17%)
Query: 207 QVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIE-----PALQERFLNDTLTEEELTQ 261
V G+ +LINNA V L Y + + ++++ L LT++ L
Sbjct: 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL--------LTQKLLPL 127
Query: 262 LMHQYVEDYQQGRHLEKG----------------WPESPYTVSKIGVSKLA--MVQQNQH 303
L + ++ + + + + V +SK A M +
Sbjct: 128 LKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLA 187
Query: 304 FQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRLIWNNK 363
++ V PG+ +T + + + +++ ++ + GR N
Sbjct: 188 VDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLD--NSHNGRFFMRNL 245
Query: 364 EEQAW 368
+ +
Sbjct: 246 KPYEF 250
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 92.6 bits (231), Expect = 7e-22
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
AIV G + G+G V+ LV G V +T NE+ ++
Sbjct: 10 KAIVIGGTHGMGLATVRRLVE--GGAEVLLTGRNESNIARIREEFG-------------- 53
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++ R D+++ +++ Q G +D+L NA V +R V
Sbjct: 54 -PRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAV 112
Query: 127 NYFGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
N G L PL+R+ ++ +S
Sbjct: 113 NTKGAFFTVQRLTPLIREGGSIVFTSSVADEG 144
Score = 31.4 bits (72), Expect = 0.36
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 21/55 (38%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEA---------------GDP------ILYLAS 346
VN+V+PG+ T +G+ EA+ A G +L+LA
Sbjct: 177 VNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAF 231
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 92.3 bits (230), Expect = 2e-21
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+ ++TGA GIG + + + + IN+ + K
Sbjct: 33 IVLITGAGHGIGRLTAYEFAK--LKSKLVLWDINKHGLEETAAKCKG------------L 78
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTM 124
K+ + VD SN + + + + + G V +L+NNA V Y L T+ ++ +T
Sbjct: 79 GAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV--VYTSDLFATQDPQIEKTF 136
Query: 125 EVNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHVS 159
EVN P + ++ V S GHVS
Sbjct: 137 EVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS 173
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 90.7 bits (226), Expect = 3e-21
Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 19/153 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
IVTGA +G+G + LV G V M +
Sbjct: 5 HIIVTGAGSGLGRALTIGLVE--RGHQVSMMGRRYQRLQQQELLL--------------- 47
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ D+++ V+ + G +++++ A + +E++ R ME
Sbjct: 48 GNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMES 107
Query: 127 NYFGLLRICHFLFPLLRQ-SARVIHVTSQCGHV 158
N + + L+ + + +V S V
Sbjct: 108 NLVSTILVAQQTVRLIGERGGVLANVLSSAAQV 140
Score = 29.5 bits (67), Expect = 1.6
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 313 VNAVNPGYAKTQMSNFS------GLMEADEAGDPILYLAS 346
+ + P +++ + + G M ++A +L
Sbjct: 173 LVNLYPSGIRSEFWDNTDHVDPSGFMTPEDAAAYMLDALE 212
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 91.5 bits (228), Expect = 3e-21
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 17/155 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAV-DQIKKIYENETIPTKRY 65
IVTGAS GIG + L + G V +T ++ L V ++
Sbjct: 30 KVIVTGASKGIGREMAYHLAKM--GAHVVVTARSK-ETLQKVVSHCLELG---------- 76
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
+ + + + E F + GG+D+LI N + + ++ME
Sbjct: 77 -AASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSME 135
Query: 126 VNYFGLLRICHFLFPLLRQSA-RVIHVTSQCGHVS 159
VN+ + + P+L+QS ++ V+S G V+
Sbjct: 136 VNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVA 170
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 90.7 bits (226), Expect = 6e-21
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 18/152 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A++TGA++GIG + V +G V++T + AA+ +I
Sbjct: 31 IAVITGATSGIGLAAAKRFVA--EGARVFITGRRKDVLDAAIAEIG-------------- 74
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ D +N ++++ + + + G +DVL NA E+ + T +
Sbjct: 75 -GGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDR 133
Query: 127 NYFGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
N G+L PLL + + V+ S G
Sbjct: 134 NVKGVLFTVQKALPLLARGSSVVLTGSTAGST 165
Score = 30.6 bits (70), Expect = 0.73
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 18/86 (20%)
Query: 278 KGWPE-SPYTVSKIGVSKLAMVQQNQHFQNGTADLS-----VNAVNPGYAKTQMSNFSGL 331
G P S Y SK + A +N DL +N ++PG +T
Sbjct: 165 TGTPAFSVYAASKAALRSFA--------RNWILDLKDRGIRINTLSPGPTETTGLVELAG 216
Query: 332 MEADEAGDPILYLASIQPY----QPE 353
+ + + LA+ P + E
Sbjct: 217 KDPVQQQGLLNALAAQVPMGRVGRAE 242
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 90.1 bits (224), Expect = 9e-21
Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 31/168 (18%)
Query: 7 SVAIVTGASTGIGYNVVQDLVRFYDG--TVYMTCINETAGLAAVDQIKKIYENETIPTKR 64
+ ++TG + G+G +V+ L+ ++ TC N D + K + N
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKNHSN------- 73
Query: 65 YYQEKIKFYRVDVSNESQVENFTQHIAQQHG--GVDVLINNAAVHLDYAG-HLTKSEKLN 121
I +D+ N + I G++VL NNA + A +S++L
Sbjct: 74 -----IHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELL 128
Query: 122 RTMEVNYFGLLRICHFLFPLLRQS-------------ARVIHVTSQCG 156
T++ N + + PLL+++ A +I+++S G
Sbjct: 129 DTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 176
Score = 49.7 bits (119), Expect = 6e-07
Identities = 36/258 (13%), Positives = 77/258 (29%), Gaps = 61/258 (23%)
Query: 141 LLRQSARVIHVTSQCGHVSQIRNGTELQEKFLN------DTLTEEELTQLMRQYVEDYQQ 194
LL H+ + C + Q + +L + N D + +L+ +E +
Sbjct: 41 LLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVAD-IEGVTK 99
Query: 195 GRHLEKGKYPGIQVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIE-----PALQERF 249
+ L +VL NNA + A ++ D ++ P +
Sbjct: 100 DQGL---------------NVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIM---- 140
Query: 250 LNDTLTEEELTQLMHQYVEDYQQGRHLEKGWPESPYTV---SKIG--------------V 292
L + ++ + + + S +G
Sbjct: 141 ---------LAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRT 191
Query: 293 SKLA--MVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPY 350
SK A ++ + +++PG+ KT M S ++ + I + +I
Sbjct: 192 SKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSSAPLDVPTSTGQI--VQTISKL 249
Query: 351 QPEPRGRLIWNNKEEQAW 368
+ G + + AW
Sbjct: 250 GEKQNGGFVNYDGTPLAW 267
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 88.9 bits (221), Expect = 2e-20
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 26/152 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
+V G S +G VV+ ++D EN
Sbjct: 24 NILVLGGSGALGAEVVKFFKS--KS----------WNTISID----FRENP--------- 58
Query: 68 EKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTMEV 126
+ + S E ++++ + I + VD + A + + +++
Sbjct: 59 NADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDM 118
Query: 127 NYFGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
N + H LL Q + +
Sbjct: 119 NLYSAFASAHIGAKLLNQGGLFVLTGASAALN 150
Score = 33.4 bits (77), Expect = 0.090
Identities = 18/159 (11%), Positives = 35/159 (22%), Gaps = 44/159 (27%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
VD + A + K + I+ L F
Sbjct: 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFA------------SAHIG---- 130
Query: 272 QGRHLEKG---------------WPESPYTVSKIGVSKL--AMVQQNQHFQNGTADLSVN 314
+ L +G Y +K + + +N G +
Sbjct: 131 -AKLLNQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAG---STSL 186
Query: 315 AVNPGYAKTQM-------SNFSGLMEADEAGDPILYLAS 346
+ P T +NF E + + ++
Sbjct: 187 GILPVTLDTPTNRKYMSDANFDDWTPLSEVAEKLFEWST 225
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 88.1 bits (219), Expect = 3e-20
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
V +VTG S GIG ++V L TV A L + K Y
Sbjct: 4 VILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKL--------------KEKYG 49
Query: 68 EKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTME 125
++ + D++ +S ++ + HG +D L+ NA V L+ ++ + +
Sbjct: 50 DRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGV-LEPVQNVNEIDVNAWKKLYD 108
Query: 126 VNYFGLLRICHFLFPLLRQSA-RVIHVTSQCGHVS 159
+N+F ++ + P L+++ V+ V+S ++
Sbjct: 109 INFFSIVSLVGIALPELKKTNGNVVFVSSDACNMY 143
Score = 28.4 bits (64), Expect = 3.5
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 21/85 (24%)
Query: 279 GWPESPYTVSKIGVSKLAMVQQNQHFQNGTA----DLSVNAVNPGYAKTQM------SNF 328
W Y SK ++ AM A + AV PG T M +
Sbjct: 146 SW--GAYGSSKAALNHFAM---------TLANEERQVKAIAVAPGIVDTDMQVNIRENVG 194
Query: 329 SGLMEADEAGDPILYLASIQPYQPE 353
M A++ + Q
Sbjct: 195 PSSMSAEQLKMFRGLKENNQLLDSS 219
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 88.4 bits (220), Expect = 3e-20
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTG S+GIG V+ L+ G V + AA +++ R+
Sbjct: 10 VAVVTGGSSGIGLATVELLLE--AGAAVAFCARDGERLRAAESALRQ----------RFP 57
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++ DV + QV F + + G +L+NNA T E + +++
Sbjct: 58 GARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQL 117
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
+F ++ P L A ++ V S
Sbjct: 118 KFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ 151
Score = 29.1 bits (66), Expect = 2.2
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRL 358
VN + G ++ + D + A + + P GRL
Sbjct: 184 VNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRL 229
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 87.2 bits (217), Expect = 5e-20
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 17/156 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V +VTGA+ GIG + G +V + E + DQIK
Sbjct: 16 VILVTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSAG---------QP 64
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTM 124
Q I ++ + Q + + G +D L++NA++ + L E + M
Sbjct: 65 QPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASI-IGPRTPLEQLPDEDFMQVM 123
Query: 125 EVNYFGLLRICHFLFPLLRQS--ARVIHVTSQCGHV 158
VN + L PLL++S A + +S G
Sbjct: 124 HVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK 159
Score = 42.5 bits (101), Expect = 1e-04
Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 49/191 (25%)
Query: 174 DTLTEEELTQLMRQYVEDYQQGRHLEKGKYPGIQVHQSGVDVLINNAAVHLDYAGHLTK- 232
+ T ++ +L + ++ GR +D L++NA++ + L +
Sbjct: 74 ENATAQQYRELAARVEHEF--GR----------------LDGLLHNASI-IGPRTPLEQL 114
Query: 233 SEKDNQDKIEPALQERFLNDTLTEEELTQLMHQ----------YVEDYQQGRHLEKGWPE 282
++D + + F+ LT L L V GR W
Sbjct: 115 PDEDFMQVMHVNVNATFM---LTRALLPLLKRSEDASIAFTSSSV-----GRKGRANW-- 164
Query: 283 SPYTVSKIGVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQMS-------NFSGLMEAD 335
Y VSK ++Q G + N++NPG +T M N +
Sbjct: 165 GAYGVSKFAT--EGLMQTLADELEGVTAVRANSINPGATRTGMRAQAYPDENPLNNPAPE 222
Query: 336 EAGDPILYLAS 346
+ LYL
Sbjct: 223 DIMPVYLYLMG 233
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 87.2 bits (217), Expect = 6e-20
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAI+TG + GIG + V +G V +T + G A +
Sbjct: 8 VAIITGGTLGIGLAIATKFVE--EGAKVMITGRHSDVGEKAAKSVGT------------- 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++I+F++ D S+E + G V L+NNA + ++ + T + + + + V
Sbjct: 53 PDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAV 112
Query: 127 NYFGLLRICHFLFPLLRQS---ARVIHVTSQCGHV 158
N G+ ++ A +I+++S G V
Sbjct: 113 NLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV 147
Score = 35.2 bits (82), Expect = 0.023
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 26/89 (29%)
Query: 279 GWPE-SPYTVSKIGV---SK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLME 333
G P Y SK V SK A+ D+ VN V+PGY KT + + E
Sbjct: 148 GDPSLGAYNASKGAVRIMSKSAAL-----DCALKDYDVRVNTVHPGYIKTPLVDDLPGAE 202
Query: 334 ADEA----------GDP------ILYLAS 346
+ G+P +YLAS
Sbjct: 203 EAMSQRTKTPMGHIGEPNDIAYICVYLAS 231
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 86.1 bits (214), Expect = 1e-19
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+AI+TGAS GIG + L DG V + ++ D+I + +
Sbjct: 9 LAIITGASQGIGAVIAAGLAT--DGYRVVLIARSKQNLEKVHDEIMR---------SNKH 57
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++ +D+++ ++ + + I Q++G VD+L+N AA+ +D + + ME+
Sbjct: 58 VQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMD-GSLSEPVDNFRKIMEI 116
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
N I + ++ +++ + +V S+
Sbjct: 117 NVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY 150
Score = 31.0 bits (71), Expect = 0.47
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 313 VNAVNPGYAKTQMSNFSG-------LMEADEAGDPILYLASIQP 349
V + PG+ T M+ +G +++ D+ + I L +
Sbjct: 183 VTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTIRCLLN-LS 225
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 86.1 bits (214), Expect = 2e-19
Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 17/152 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAI+TG+S GIG R +G V +T + QI +E
Sbjct: 8 VAIITGSSNGIGRATAVLFAR--EGAKVTITGRHAERLEETRQQILAAGVSE-------- 57
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVH----LDYAGHLTKSEKLNR 122
+ + DV+ ++ + + G +D+L+NNA G E +
Sbjct: 58 -QNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDA 116
Query: 123 TMEVNYFGLLRICHFLFPLLRQSA-RVIHVTS 153
T+ +N ++ + P L + +++++S
Sbjct: 117 TLNLNLRSVIALTKKAVPHLSSTKGEIVNISS 148
Score = 31.8 bits (73), Expect = 0.32
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 24/58 (41%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEA------------------GDP------ILYLAS 346
VN+++PG T + G+ E G P I +LA
Sbjct: 187 VNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLAD 244
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 86.5 bits (215), Expect = 2e-19
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
I+TG+S GIG + + +G V +T NE QI K
Sbjct: 28 SVIITGSSNGIGRSAAVIFAK--EGAQVTITGRNEDRLEETKQQILKAGVPA-------- 77
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT--KSEKLNRTM 124
EKI DV+ S ++ + G +D+L+NNA +L T E +T
Sbjct: 78 -EKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTF 136
Query: 125 EVNYFGLLRICHFLFP-LLRQSARVIHVTS 153
++N+ ++ + L++ +++V+S
Sbjct: 137 KLNFQAVIEMTQKTKEHLIKTKGEIVNVSS 166
Score = 31.4 bits (72), Expect = 0.48
Identities = 32/175 (18%), Positives = 51/175 (29%), Gaps = 58/175 (33%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDK-IEPALQERFLNDTLTEEELTQLMHQYVEDY 270
+D+L+NNA +L T + K + Q +T++ L+
Sbjct: 106 KIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIE---MTQKTKEHLIKT----- 157
Query: 271 QQGR--------HLEKGWPE-SPYTVSKIGVSKLAMVQQNQHFQNGTA-DLS-----VNA 315
+G + Y +K + + TA DL VN+
Sbjct: 158 -KGEIVNVSSIVAGPQAHSGYPYYACAKAALD---------QYTRCTAIDLIQHGVRVNS 207
Query: 316 VNPGYAKTQMSNFSGLMEADE------------------AGDP------ILYLAS 346
V+PG T GL E G P I++LA
Sbjct: 208 VSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLAD 262
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 85.3 bits (212), Expect = 3e-19
Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+ +VTGAS GIG R+ G TV + NE I + +
Sbjct: 14 IILVTGASDGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINE---------ETGR 62
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
Q + + + Q IA + +D +++NA + D + M+
Sbjct: 63 QPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQ 122
Query: 126 VNYFGLLRICHFLFPLLRQS--ARVIHVTSQCGHV 158
VN + L PLL +S ++ +S G
Sbjct: 123 VNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ 157
Score = 38.3 bits (90), Expect = 0.002
Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 23/80 (28%)
Query: 279 GWPESPYTVSKIGVSKLAMVQQNQHFQNGTAD-----LSVNAVNPGYAKTQM--SNFSG- 330
W Y SK M+Q AD L VN +NPG +T M S F
Sbjct: 161 NW--GAYAASKFAT--EGMMQV-------LADEYQQRLRVNCINPGGTRTAMRASAFPTE 209
Query: 331 ----LMEADEAGDPILYLAS 346
L + L+L
Sbjct: 210 DPQKLKTPADIMPLYLWLMG 229
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 85.3 bits (212), Expect = 4e-19
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 18/156 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTG S GIGY +V++L G VY NE ++ ++
Sbjct: 23 TALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREK------------ 68
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGG-VDVLINNAAVHLDYAGHLTKSEKLNRTME 125
++ D+ + ++ + Q +A G +++L+NNA V + + N M
Sbjct: 69 GLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMG 128
Query: 126 VNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHVS 159
N+ + +PLL Q+ VI ++S G +
Sbjct: 129 TNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA 164
Score = 28.6 bits (65), Expect = 2.9
Identities = 28/191 (14%), Positives = 47/191 (24%), Gaps = 97/191 (50%)
Query: 213 VDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMH-------- 264
+++L+NNA V K A TE++ +M
Sbjct: 100 LNILVNNAGV--------------VIHK--EAKD-------FTEKDYNIIMGTNFEAAYH 136
Query: 265 --QYVEDYQQGRHLEK----------------GWPE-SPYTVSKIGVSKLAMVQQNQHFQ 305
Q L+ P S Y+ SK ++++
Sbjct: 137 LSQIA-----YPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQM---------- 181
Query: 306 NGTADLS---------VNAVNPGYAKTQMSN------------FSGLM---------EAD 335
T L+ VN+V PG T + + +
Sbjct: 182 --TKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQ 239
Query: 336 EAGDPILYLAS 346
E I +L
Sbjct: 240 EVSALIAFLCF 250
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 85.3 bits (212), Expect = 4e-19
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 17/152 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
I+TG+S GIG + +G V +T + I K
Sbjct: 8 TVIITGSSNGIGRTTAILFAQ--EGANVTITGRSSERLEETRQIILK---------SGVS 56
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKL----NR 122
++++ DV+ E + +Q G +DVL+NNA + A T +++ ++
Sbjct: 57 EKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHK 116
Query: 123 TMEVNYFGLLRICHFLFPLLRQSA-RVIHVTS 153
T+++N ++ + + P L S +++V+S
Sbjct: 117 TLKLNLQAVIEMTKKVKPHLVASKGEIVNVSS 148
Score = 29.5 bits (67), Expect = 1.9
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 24/58 (41%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEA------------------GDP------ILYLAS 346
VN+V+PG +T +N G+ + G P IL+LA
Sbjct: 187 VNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLAD 244
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 84.5 bits (210), Expect = 6e-19
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 21/154 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V +VTG GIG +V+ V G V + +E+ G A ++
Sbjct: 11 VVVVTGGGRGIGAGIVRAFVN--SGARVVICDKDESGGRALEQEL--------------- 53
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
F DV+ E V+ ++ G +D ++NNA H T ++ + +E
Sbjct: 54 -PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLE 112
Query: 126 VNYFGLLRICHFLFPLLRQ-SARVIHVTSQCGHV 158
+N G + P LR+ VI+++S G +
Sbjct: 113 LNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI 146
Score = 32.9 bits (76), Expect = 0.14
Identities = 29/186 (15%), Positives = 49/186 (26%), Gaps = 85/186 (45%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMH------- 264
+D ++NNA H + E + + QL+
Sbjct: 82 RLDCVVNNAGHHPP------------PQRPE----------ETSAQGFRQLLELNLLGTY 119
Query: 265 ---QYVEDYQQGRHLEKG----------------WPESPYTVSK---IGVSK-LAMVQQN 301
+ +L K PY +K ++K LA+
Sbjct: 120 TLTKLA-----LPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALAL---- 170
Query: 302 QHFQNGTADLSVNAVNPGYAKTQM-SNFSGLMEADEA--------------GDP------ 340
+ VN ++PG T + + LM A G P
Sbjct: 171 ---DESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAA 227
Query: 341 ILYLAS 346
++LAS
Sbjct: 228 AVFLAS 233
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 84.1 bits (209), Expect = 7e-19
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 26/161 (16%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAA--VDQIKKIYENE 58
M L +A+VTGA+ G+G +V+DL R D VY + + + E
Sbjct: 1 MSLKKK-IAVVTGATGGMGIEIVKDLSR--DHIVY---------ALGRNPEHLAALAE-- 46
Query: 59 TIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSE 118
E ++ D+ E E + VD L++ AAV D
Sbjct: 47 --------IEGVEPIESDIVKEVLEEGGVDKLK-NLDHVDTLVHAAAVARDTTIEAGSVA 97
Query: 119 KLNRTMEVNYFGLLRICHFLFPLLRQ-SARVIHVTSQCGHV 158
+ + +++N + L P LR S VI++ S G+
Sbjct: 98 EWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG 138
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 84.1 bits (209), Expect = 8e-19
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 16/154 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA++TG+S+GIG + + + +G + + A +K+ + +
Sbjct: 9 VAVITGSSSGIGLAIAEGFAK--EGAHIVLVARQVDRLHEAARSLKEKFGVRVL------ 60
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
VDV+ V+ + + GG D+L+NNA + EK E+
Sbjct: 61 -----EVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWEL 115
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
+R+ L P +R +IH S C
Sbjct: 116 LVMAAVRLARGLVPGMRARGGGAIIHNASICAVQ 149
Score = 27.9 bits (63), Expect = 5.3
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQM 325
Y V+K + SK LA + ++ VN +NPG T
Sbjct: 155 PIYNVTKAALMMFSKTLAT-------EVIKDNIRVNCINPGLILTPD 194
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 84.1 bits (209), Expect = 9e-19
Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
I+TG + G+G + V G V + + + G A ++
Sbjct: 7 TVIITGGARGLGAEAARQAVA--AGARVVLADVLDEEGAATARELG-------------- 50
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ ++ +DV+ E + + ++ G VD L+NNA + E+ + +E+
Sbjct: 51 -DAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEI 109
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N G+ + P ++ +++++S G +
Sbjct: 110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM 143
Score = 28.6 bits (65), Expect = 2.8
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 27/84 (32%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSN--FSGLMEADE 336
S Y SK G+SK A+ + GT + VN+V+PG T M+ E +
Sbjct: 149 SSYGASKWGVRGLSKLAAV-------ELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNY 201
Query: 337 AGDPI--------------LYLAS 346
P+ + L S
Sbjct: 202 PNTPMGRVGNEPGEIAGAVVKLLS 225
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 83.3 bits (207), Expect = 1e-18
Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 28/153 (18%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG--TVYMTCINETAGLAAVDQIKKIYENETIPTKRY 65
+VTG S GIG VV+ L++ + TV I ++
Sbjct: 6 NYLVTGGSKGIGKAVVELLLQ--NKNHTVINIDIQQSFS--------------------- 42
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
E +KF + D++ + + N I ++ D + NA + + + E + + ++
Sbjct: 43 -AENLKFIKADLTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLD 99
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
+N + + L L+ A ++ S +
Sbjct: 100 LNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI 132
Score = 27.1 bits (61), Expect = 8.6
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPE-PRGRL 358
VN V PG T + + L++ I + + + + E P R+
Sbjct: 165 VNTVCPGTVDTDL--YRNLIQKYANNVGISFDEAQKQEEKEFPLNRI 209
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 83.7 bits (208), Expect = 1e-18
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 18/156 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTG + GIG+ +V++ F G ++ NE + + +K
Sbjct: 16 TVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKG----------- 62
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGG-VDVLINNAAVHLDYAGHLTKSEKLNRTME 125
++ D S + E Q ++ GG +D+LINN +E + +
Sbjct: 63 -FQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHIS 121
Query: 126 VNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHVS 159
N + PLL +I ++S G VS
Sbjct: 122 TNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS 157
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 83.8 bits (208), Expect = 1e-18
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAG----LAA--VDQIKKIYENETIP 61
+A+VTGAS GIG V + LV+ G A V I+++
Sbjct: 34 LALVTGASGGIGAAVARALVQ--------------QGLKVVGCARTVGNIEEL--AAECK 77
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLN 121
Y + YR D+SNE + + I QH GVD+ INNA + +
Sbjct: 78 -SAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWK 136
Query: 122 RTMEVNYFGLLRICHFLFPLLRQ----SARVIHVTSQCGH 157
VN L + +++ +I++ S GH
Sbjct: 137 DMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH 176
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 83.3 bits (207), Expect = 2e-18
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTG ++G+G VV+ L+ +G V + INE AG ++
Sbjct: 8 VALVTGGASGVGLEVVKLLLG--EGAKVAFSDINEAAGQQLAAELG-------------- 51
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
E+ F R DVS+E+ + ++ G ++VL+NNA + L + E +R +++
Sbjct: 52 -ERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKI 110
Query: 127 NYFGLLRICHFLFPLLRQS-ARVIHVTSQCGHV 158
N + C ++++ +I++ S +
Sbjct: 111 NTESVFIGCQQGIAAMKETGGSIINMASVSSWL 143
Score = 30.9 bits (71), Expect = 0.50
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 283 SPYTVSKIGV---SK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAG 338
+ Y+ SK V ++ A+ + + VN+++P T M + +
Sbjct: 149 AGYSASKAAVSALTRAAAL-----SCRKQGYAIRVNSIHPDGIYTPM--MQASLPKGVSK 201
Query: 339 DPILYLASIQP 349
+ +L+ +
Sbjct: 202 EMVLHDPKLNR 212
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 84.4 bits (209), Expect = 2e-18
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 25/164 (15%)
Query: 5 GPSVAIVTGASTGIGYNVVQDLVRFYDG--TVYMTCINETAGLAAVDQIKKIYENETIPT 62
+V ++TG S+GIG ++ L VY T + L ++ + P
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRD----LKTQGRLWEAARALACPP 56
Query: 63 KRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL-----TKS 117
++ ++DV + V + + + G VDVL+ NA + G L
Sbjct: 57 GS-----LETLQLDVRDSKSVAAARERVTE--GRVDVLVCNAGL-----GLLGPLEALGE 104
Query: 118 EKLNRTMEVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHVS 159
+ + ++VN G +R+ P +++ S RV+ S G +
Sbjct: 105 DAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG 148
Score = 28.1 bits (63), Expect = 5.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 207 QVHQSGVDVLINNAAV 222
+V + VDVL+ NA +
Sbjct: 78 RVTEGRVDVLVCNAGL 93
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 83.3 bits (207), Expect = 2e-18
Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VT ++ GIG + + L + DG V ++ + V ++
Sbjct: 16 VALVTASTDGIGLAIARRLAQ--DGAHVVVSSRKQENVDRTVATLQGE------------ 61
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTM 124
+ V E HGGVD+L++NAAV+ + G++ E ++ +
Sbjct: 62 GLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFF-GNIIDATEEVWDKIL 120
Query: 125 EVNYFGLLRICHFLFPLLRQ--SARVIHVTS 153
VN + + + P + + V+ V+S
Sbjct: 121 HVNVKATVLMTKAVVPEMEKRGGGSVLIVSS 151
Score = 37.5 bits (88), Expect = 0.004
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 62/173 (35%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
GVD+L++NAAV+ + G++ + ++ DKI L+ + T LM + V
Sbjct: 91 GVDILVSNAAVNPFF-GNIIDATEEVWDKI--------LHVNVKA---TVLMTKAV---- 134
Query: 272 QGRHLEK----------------GWPE-SPYTVSK---IGVSK-LAMVQQNQHFQNGTAD 310
+EK +P PY VSK +G++K LA+ + +
Sbjct: 135 -VPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAV-------ELAPRN 186
Query: 311 LSVNAVNPGYAKTQMSNFSGLMEADEA-----------GDP------ILYLAS 346
+ VN + PG KT S + +A + G+P + +L S
Sbjct: 187 IRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCS 239
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 83.4 bits (207), Expect = 2e-18
Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTG +GIG V LV G +V + N AV +++ + N
Sbjct: 13 TYLVTGGGSGIGKGVAAGLVA--AGASVMIVGRNPDKLAGAVQELEALGANG-------- 62
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
I++ D++NE + + HG + +++ A + SE RT++
Sbjct: 63 -GAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVD 121
Query: 126 VNYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
+N G + + H ++R + ++S
Sbjct: 122 LNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN 156
Score = 32.5 bits (75), Expect = 0.19
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 32/87 (36%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEA- 337
Y V+K + + A + G + + VN++ PG +T + + + E+ E
Sbjct: 162 GAYGVTKSAVDHLMQLAAD-------ELGASWVRVNSIRPGLIRTDLV--AAITESAELS 212
Query: 338 ------------GDP------ILYLAS 346
G+ ++L S
Sbjct: 213 SDYAMCTPLPRQGEVEDVANMAMFLLS 239
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 84.4 bits (209), Expect = 2e-18
Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 22/160 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+ ++TGAS+G G + L G VY + + + R
Sbjct: 7 IILITGASSGFGRLTAEALAG--AGHRVYASMRD-------IVGRNASNVEAIAGFARDN 57
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL-----TKSEKLN 121
++ +DV ++ V+ I + G +DVLI+NA E+
Sbjct: 58 DVDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGH-----MVFGPAEAFTPEQFA 112
Query: 122 RTMEVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHVS 159
++N R+ P +R+ +I ++S
Sbjct: 113 ELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG 152
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 84.0 bits (208), Expect = 2e-18
Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 19/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A VTG + G+G +V+ L+ G V + I + + A+ ++
Sbjct: 10 TAFVTGGANGVGIGLVRQLLN--QGCKVAIADIRQDSIDKALATLEA----------EGS 57
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTM 124
++ ++DV++ + + + G V +L NNA V+L + + + + +
Sbjct: 58 GPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNL--FQPIEESSYDDWDWLL 115
Query: 125 EVNYFGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
VN G++ P + RV + GHV
Sbjct: 116 GVNLHGVVNGVTTFVPRMV--ERVKAGEQKGGHV 147
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 82.6 bits (205), Expect = 3e-18
Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 20/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+V+G + G+G + V+ +V +G V I + G A ++
Sbjct: 9 VALVSGGARGMGASHVRAMVA--EGAKVVFGDILDEEGKAMAAELA-------------- 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ ++ +DV+ +Q + GG+ VL+NNA + + R ++V
Sbjct: 53 -DAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDV 111
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N G+ + +++ +I+++S G
Sbjct: 112 NLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA 145
Score = 30.2 bits (69), Expect = 1.0
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 25/80 (31%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADE-- 336
YT +K G++K A+ + G + + VN+++PG KT M+ + E
Sbjct: 151 HGYTATKFAVRGLTKSTAL-------ELGPSGIRVNSIHPGLVKTPMT--DWVPEDIFQT 201
Query: 337 ----AGDP------ILYLAS 346
A +P ++YLAS
Sbjct: 202 ALGRAAEPVEVSNLVVYLAS 221
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 82.2 bits (204), Expect = 5e-18
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 19/156 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA VTG+S GIG+ V + + G V + + A A K Y
Sbjct: 36 VASVTGSSGGIGWAVAEAYAQA--GADVAIWYNSHPADEKAEHLQKT------------Y 81
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTM 124
K Y+ ++S+ VE + G +DV + NA V + + N+ +
Sbjct: 82 GVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKII 141
Query: 125 EVNYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
V+ G+ + + +I +S G +
Sbjct: 142 SVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKI 177
Score = 34.1 bits (79), Expect = 0.060
Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 70/176 (39%)
Query: 213 VDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQQ 272
+DV + NA V + D+ +KI ++ L +
Sbjct: 112 IDVFVANAGVTWTQGPEIDVDNYDSWNKI--------ISVDLNG---VYYCSHNI----- 155
Query: 273 GRHLEK-------------------GWPESPYTVSKIGVSKLAMVQQNQHFQNGTADLS- 312
G+ +K ++PY +K + L L+
Sbjct: 156 GKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHL------------AKSLAI 203
Query: 313 -------VNAVNPGYAKTQMSNFSG---------------LMEADEAGDPILYLAS 346
VN ++PGY T +++F+ E LYLAS
Sbjct: 204 EWAPFARVNTISPGYIDTDITDFASKDMKAKWWQLTPLGREGLTQELVGGYLYLAS 259
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 82.3 bits (204), Expect = 5e-18
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 23/157 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+AIVTGA +G+G V L G V + A +I
Sbjct: 30 IAIVTGAGSGVGRAVAVALAG--AGYGVALAGRRLDALQETAAEI--------------- 72
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
+ DV++ V ++ G VDVL NNA + + ++
Sbjct: 73 GDDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVD 132
Query: 126 VNYFGLLRICHFLFPLLR----QSARVIHVTSQCGHV 158
N G F +++ + R+I+ S
Sbjct: 133 TNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS 169
Score = 41.5 bits (98), Expect = 2e-04
Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 39/161 (24%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
VDVL NNA + + ++ L FL T+E + Q + +
Sbjct: 102 RVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFL---CTQEAFRVMKAQ---EPR 155
Query: 272 QGR-------HLEKGWPES-PYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPG 319
GR P S PYT +K G++K ++ D++ ++ G
Sbjct: 156 GGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSL-------DGRVHDIACGQIDIG 208
Query: 320 YAKTQMSNFSG--------------LMEADEAGDPILYLAS 346
A T M+ +M+ ++Y+AS
Sbjct: 209 NADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMAS 249
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 81.6 bits (202), Expect = 6e-18
Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 23/163 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG--TVYMTCINETAGLAAVDQIKKIYENETIPTKRY 65
V ++TGAS G G + L R + ++ +E+ +++ +
Sbjct: 8 VCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG----------AQQ 57
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHG----GVDVLINNAAVHLDYAG---HLTKSE 118
K+ D+ E+ V+ + + +LINNAA D + ++
Sbjct: 58 PDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLA 117
Query: 119 KLNRTMEVNYFGLLRICHFLFPLLRQS----ARVIHVTSQCGH 157
++N +N +L + + S V++++S C
Sbjct: 118 EVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160
Score = 31.2 bits (71), Expect = 0.52
Identities = 30/167 (17%), Positives = 46/167 (27%), Gaps = 34/167 (20%)
Query: 206 IQVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEE-ELTQLMH 264
+ +LINNAA G ++K + D A + LT LT
Sbjct: 86 PRPEGLQRLLLINNAAT----LGDVSKGFLNVND---LAEVNNYWALNLTSMLCLTSGTL 138
Query: 265 QYVEDYQQ------------GRHLEKGWPESPYTVSKIGVSKLAMVQQNQHFQNGTADLS 312
+D KGW Y K L V + +
Sbjct: 139 NAFQDSPGLSKTVVNISSLCALQPYKGW--GLYCAGKAARDMLYQVLAAEE-----PSVR 191
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRLI 359
V + PG M + D + +Q + + G L+
Sbjct: 192 VLSYAPGPLDNDMQQLARETSKDPE-----LRSKLQKLKSD--GALV 231
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 81.9 bits (203), Expect = 8e-18
Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 19/157 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A+VTG TG+G + Q L +G +V +T AA +I N
Sbjct: 35 IALVTGGGTGVGRGIAQALSA--EGYSVVITGRRPDVLDAAAGEIGGRTGNIVR------ 86
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
DV + QV + + +D+L+NNA ++ E+ N +
Sbjct: 87 -----AVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVA 141
Query: 126 VNYFGLLRICHFLFPLLR----QSARVIHVTSQCGHV 158
N G F +++ + R+I+ S
Sbjct: 142 ANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT 178
Score = 44.2 bits (105), Expect = 3e-05
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 39/161 (24%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
+D+L+NNA ++ + + + L FL T+ + Q +
Sbjct: 111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFL---CTQHAFRMMKAQ---TPR 164
Query: 272 QGR-------HLEKGWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPG 319
GR + P +PYT +K G++K A+ D++ ++ G
Sbjct: 165 GGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTAL-------DGRMHDIACGQIDIG 217
Query: 320 YAKTQMSNFSG--------------LMEADEAGDPILYLAS 346
A T M+ + + + ++Y+AS
Sbjct: 218 NAATDMTARMSTGVLQANGEVAAEPTIPIEHIAEAVVYMAS 258
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 82.0 bits (203), Expect = 9e-18
Identities = 32/157 (20%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAA--VDQIKKIYENETIPTKRY 65
++TGAS GIG + + M I LAA +++++++ + + +
Sbjct: 35 TVLITGASAGIGKATALEYLE--ASNGDMKLI-----LAARRLEKLEEL-KKTI--DQEF 84
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNA--AVHLDYAGHLTKSEKLNRT 123
K+ ++D++ +++ F +++ Q+ +D+L+NNA A+ D G + +E +
Sbjct: 85 PNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQI-ATEDIQDV 143
Query: 124 MEVNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
+ N L+ I + P+ + S ++++ S G
Sbjct: 144 FDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD 180
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 80.6 bits (200), Expect = 1e-17
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 20/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
IVTG GIG + D + G V I+E + +
Sbjct: 4 GVIVTGGGHGIGKQICLDFLE--AGDKVCFIDIDEKRSADFAKERPNL------------ 49
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++ DV++ ++ F ++ ++ +DVL+NNA E+ + + V
Sbjct: 50 ----FYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSV 105
Query: 127 NYFGLLRICHFLFP-LLRQSARVIHVTSQCGHVS 159
+ L++ R+I++ S S
Sbjct: 106 GLKAPYELSRLCRDELIKNKGRIINIASTRAFQS 139
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 80.6 bits (200), Expect = 1e-17
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGA GIG + LV+ DG V + N+ A +I +
Sbjct: 4 VALVTGAGQGIGKAIALRLVK--DGFAVAIADYNDATAKAVASEINQ------------A 49
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+VDVS+ QV + + GG DV++NNA V E +++ +
Sbjct: 50 GGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNI 109
Query: 127 NYFGLLRICHFLFPL---LRQSARVIHVTSQCGHV 158
N G++ ++I+ SQ GHV
Sbjct: 110 NVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV 144
Score = 27.5 bits (62), Expect = 7.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 313 VNAVNPGYAKTQM 325
VN PG KT M
Sbjct: 177 VNGYCPGIVKTPM 189
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 81.1 bits (201), Expect = 2e-17
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAI+TG + GIG + VR G V + I + G + I
Sbjct: 18 VAIITGGAGGIGETTAKLFVR--YGAKVVIADIADDHGQKVCNNIGS------------- 62
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKS--EKLNRTM 124
+ I F DV+ + V N +HG +D++ N V + ++ E R M
Sbjct: 63 PDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVM 122
Query: 125 EVNYFG 130
++N +G
Sbjct: 123 DINVYG 128
Score = 31.4 bits (72), Expect = 0.38
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 15/72 (20%)
Query: 283 SPYTVSKIGVSKLAMVQQNQHFQNGTADLS-----VNAVNPGYAKTQMSNFSGLMEADEA 337
YT +K V L + + +L VN V+P + + + + D +
Sbjct: 165 HVYTATKHAV--LGLTT------SLCTELGEYGIRVNCVSPYIVASPL--LTDVFGVDSS 214
Query: 338 GDPILYLASIQP 349
L +
Sbjct: 215 RVEELAHQAANL 226
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 80.4 bits (199), Expect = 2e-17
Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 26/157 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
I A GIG + ++LV+ ++ A+ ++K I
Sbjct: 7 NVIFVAALGGIGLDTSRELVK--RNLKNFVILDRVENPTALAELKAINPKV--------- 55
Query: 68 EKIKFYRVDVS-NESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
I F+ DV+ ++ + + I Q VD+LIN A + ++ RT+ +
Sbjct: 56 -NITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI--------LDDHQIERTIAI 106
Query: 127 NYFGLLRICHFLFPLLR-----QSARVIHVTSQCGHV 158
N+ GL+ + + ++ S G
Sbjct: 107 NFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN 143
Score = 28.0 bits (63), Expect = 4.9
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQ-PE 353
++NPG +T + + + L P Q E
Sbjct: 176 AYSINPGITRTPL--VHTFNSWLDVEPRVAELLLSHPTQTSE 215
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 81.1 bits (201), Expect = 2e-17
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 37/156 (23%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
++TGA++G+G ++L R TV M + G AA +
Sbjct: 18 TVVITGANSGLGAVTARELAR-RGATVIMAVRDTRKGEAAARTMA--------------- 61
Query: 68 EKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEK-LNRTMEV 126
+++ +D+ + S V F A G DVLINNA + A + +
Sbjct: 62 GQVEVRELDLQDLSSVRRF----ADGVSGADVLINNAGI---MAVPYALTVDGFESQIGT 114
Query: 127 NYFGLLRICHF-----LFPLLRQSARVIHVTSQCGH 157
N+ G HF L P L RV+ V+S H
Sbjct: 115 NHLG-----HFALTNLLLPRLT--DRVVTVSSM-AH 142
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 80.7 bits (200), Expect = 2e-17
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 20/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V IVTG +GIG + + +G V + +NE A + ++I
Sbjct: 29 VCIVTGGGSGIGRATAELFAK--NGAYVVVADVNEDAAVRVANEIG-------------- 72
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K RVDVS+ E+ + + G VDVL+NNA E +R M V
Sbjct: 73 -SKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSV 131
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N G+ ++ P++R+ +I+ TS
Sbjct: 132 NVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS 165
Score = 31.4 bits (72), Expect = 0.49
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 21/55 (38%)
Query: 313 VNAVNPGYAKTQM-SNFSGLMEADEA--------------GDP------ILYLAS 346
VNAV PG + + + G +L+LAS
Sbjct: 198 VNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLAS 252
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 80.3 bits (199), Expect = 2e-17
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAIVTG + IG V L G V + ++E AV+ ++
Sbjct: 15 VAIVTGGAQNIGLACVTALAE--AGARVIIADLDEAMATKAVEDLRM------------E 60
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT-KSEKLNRTME 125
+ +DV+N V+N + + +Q G VD+L+ A + + + + ++
Sbjct: 61 GHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVD 120
Query: 126 VNYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
+N G+ R C +L Q ++ + S G +
Sbjct: 121 INLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLI 155
Score = 30.6 bits (70), Expect = 0.66
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 38/92 (41%)
Query: 281 PESPYTVSKIGVSKLAMVQQNQHFQNGTADLS---------VNAVNPGYAKTQMSNFSGL 331
++ Y SK GV + L+ NAV P Y +T ++ F
Sbjct: 161 QQAAYNASKAGVHQY------------IRSLAAEWAPHGIRANAVAPTYIETTLTRFGME 208
Query: 332 M-----------------EADEAGDPILYLAS 346
+ DE + +LAS
Sbjct: 209 KPELYDAWIAGTPMGRVGQPDEVASVVQFLAS 240
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 79.9 bits (198), Expect = 2e-17
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAG----LAA--VDQIKKIYENETIP 61
VA++TGAS GIG + + L R G L A VD+++KI +
Sbjct: 4 VAVITGASRGIGEAIARALAR--------------DGYALALGARSVDRLEKIA--HELM 47
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAV-HLDYAGHLTKSEKL 120
+ ++ ++ +DVS VE F++ + ++ G VDV++ NA + + L E+
Sbjct: 48 QE--QGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEEL-SEEEF 104
Query: 121 NRTMEVNYFGLLRICHFLFPLLRQSAR--VIHVTSQCGHV 158
+ +EVN G+ R L+++ ++ + +
Sbjct: 105 HEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL 144
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 79.9 bits (198), Expect = 2e-17
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVR------FYDGTVYMTCINETAGLAAVDQIKKIYENETIP 61
+ ++TGA GIG + + R ++ + ++ + +
Sbjct: 4 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-------- 55
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLN 121
D+S+ + V T HI +++G +D L+NNA V A E +
Sbjct: 56 ----EGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFD 111
Query: 122 RTMEVNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
TM N G + LF L+ + S + +TS
Sbjct: 112 YTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK 150
Score = 30.2 bits (69), Expect = 0.86
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 313 VNAVNPGYAKTQMSNFSG------LMEADEAGDPILYLASIQP 349
+ V PG T M +M ++ P++ QP
Sbjct: 183 ITDVQPGAVYTPMWGKVDDEMQALMMMPEDIAAPVVQAYL-QP 224
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 79.8 bits (198), Expect = 2e-17
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 23/154 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTG + GIG + Q R +G V + + G + I
Sbjct: 8 GVLVTGGARGIGRAIAQAFAR--EGALVALCDLRP-EGKEVAEAIGGA------------ 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
F++VD+ +E + F + A G VDVL+NNAA+ + + + R +EV
Sbjct: 53 -----FFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEV 107
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N + + +R+ +++V S G
Sbjct: 108 NLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF 141
Score = 28.6 bits (65), Expect = 3.3
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 21/55 (38%)
Query: 313 VNAVNPGYAKTQM-SNFSGLMEADEA--------------GDP------ILYLAS 346
VNAV PG T+ L E G P +L+LAS
Sbjct: 174 VNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLAS 228
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 79.8 bits (198), Expect = 2e-17
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTG S GIGY +V++L G +VY N+ + Q +
Sbjct: 11 TALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSK------------ 56
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQ-HGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
K++ D+S+ S+ + +A HG +++L+NNA + + E + M
Sbjct: 57 GFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMS 116
Query: 126 VNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHVS 159
+N+ + P L + V+ ++S G ++
Sbjct: 117 INFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA 152
Score = 30.1 bits (69), Expect = 1.1
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 40/133 (30%)
Query: 212 GVDVLINNAAVHLDYAGHLTK-SEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDY 270
+++L+NNA + + + +D + + + L+ L H +++
Sbjct: 87 KLNILVNNAGIVIY--KEAKDYTVEDYSLIMSINFEAAYH--------LSVLAHPFLKAS 136
Query: 271 QQGR-------HLEKGWPE-SPYTVSKIGVSKLAMVQQNQHFQNGTADLS---------V 313
++G P + Y +K + +L T L+ V
Sbjct: 137 ERGNVVFISSVSGALAVPYEAVYGATKGAMDQL------------TRCLAFEWAKDNIRV 184
Query: 314 NAVNPGYAKTQMS 326
N V PG T +
Sbjct: 185 NGVGPGVIATSLV 197
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 79.9 bits (198), Expect = 2e-17
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V +VTGA IG L +G + + +N A A +++
Sbjct: 9 VCLVTGAGGNIGLATALRLAE--EGTAIALLDMNREALEKAEASVREK------------ 54
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
+ + Y DV++E V + + G +D L NNA +A S+ R +
Sbjct: 55 GVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLT 114
Query: 126 VNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
+N G + + + R+++ S G
Sbjct: 115 INVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK 149
Score = 28.7 bits (65), Expect = 2.6
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 279 GWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQM 325
G P + Y SK I +++ A+ ++ VNA++PGY
Sbjct: 150 GPPNMAAYGTSKGAIIALTETAAL-------DLAPYNIRVNAISPGYMGPGF 194
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 80.9 bits (200), Expect = 3e-17
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 18/157 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTG ++GIG + R G + ++ +++ A AV+ ++
Sbjct: 33 AAVVTGGASGIGLATATEFAR--RGARLVLSDVDQPALEQAVNGLRGQ------------ 78
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
DV + ++ + GGVDV+ +NA + + + +++
Sbjct: 79 GFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDI 138
Query: 127 NYFGLLRICHFLFPLLRQS---ARVIHVTSQCGHVSQ 160
+ +G + P L + + S G V
Sbjct: 139 DLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN 175
Score = 30.0 bits (68), Expect = 1.1
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 283 SPYTVSKIGVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGDPIL 342
Y V+K GV LA + + + V+ + P +T++ + S + + G
Sbjct: 179 GTYGVAKYGVVGLA---ETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSAT 235
Query: 343 YLASIQPYQPEPRG 356
+ P +
Sbjct: 236 PEGAFGPLPTQDES 249
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 80.0 bits (198), Expect = 3e-17
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGA+ GIG + L+ G V + N AG+ + + +E +
Sbjct: 9 VALVTGAAQGIGRAFAEALLL--KGAKVALVDWNLEAGVQCKAALHEQFEPQ-------- 58
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K F + DV+++ Q+ + + + G +D+L+NNA V + +T+++
Sbjct: 59 --KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV--------NNEKNWEKTLQI 108
Query: 127 N 127
N
Sbjct: 109 N 109
Score = 31.8 bits (73), Expect = 0.27
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 283 SPYTVSK---IGVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGD 339
Y SK +G ++ A + N +NA+ PG+ T + + + + G
Sbjct: 151 PVYCASKHGIVGFTRSAALAANLMNSGVR----LNAICPGFVNTAI--LESIEKEENMGQ 204
Query: 340 PILYLASIQPYQPEPR 355
I Y I+
Sbjct: 205 YIEYKDHIKDMIKYYG 220
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 79.9 bits (198), Expect = 3e-17
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A++TG++ GIG + VR +G TV + I+ A +I
Sbjct: 10 SALITGSARGIGRAFAEAYVR--EGATVAIADIDIERARQAAAEIG-------------- 53
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++DV+ + ++ + GG+D+L+NNAA+ E + +
Sbjct: 54 -PAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAI 112
Query: 127 NYFGLLRICHFLFPLLR---QSARVIHVTSQCGHV 158
N G L + + ++I++ SQ G
Sbjct: 113 NVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR 147
Score = 28.3 bits (64), Expect = 4.0
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPI-----LYLASIQPYQPEPRGRL 358
VNA+ PG + + + A P L ++ P GR+
Sbjct: 180 VNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAV------PFGRM 224
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 79.4 bits (197), Expect = 3e-17
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 19/157 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAIVTGAS+G G + + G V ++ Y ++ +
Sbjct: 4 VAIVTGASSGNGLAIATRFLA--RGDRVAALDLSAETLEETARTHWHAYADKVL------ 55
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG---HLTKSEKLNRT 123
R DV++E V +Q G +DVL+NNA + + H T E+ ++
Sbjct: 56 -----RVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKV 110
Query: 124 MEVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
M VN G+ C + P + + ++++ S V
Sbjct: 111 MAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV 147
Score = 32.1 bits (74), Expect = 0.24
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 32/87 (36%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEA- 337
S YT SK + ++K +A+ + + NAV PG +T M ++ E
Sbjct: 153 SAYTTSKGAVLQLTKSVAV-------DYAGSGIRCNAVCPGMIETPM--TQWRLDQPELR 203
Query: 338 ------------GDP------ILYLAS 346
G +++LA
Sbjct: 204 DQVLARIPQKEIGTAAQVADAVMFLAG 230
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 79.5 bits (197), Expect = 4e-17
Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V ++TG +G+G L +G + + ++ A+ + +
Sbjct: 15 VVLITGGGSGLGRATAVRLAA--EGAKLSLVDVSSEGLEASKAAVLE----------TAP 62
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
++ DVS+E+QVE + ++ G +D NNA + + + ++ +
Sbjct: 63 DAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVS 122
Query: 126 VN 127
+N
Sbjct: 123 IN 124
Score = 31.7 bits (73), Expect = 0.27
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAG 338
S Y +K +G+++ A+ + G + +NA+ PG T M M+ +
Sbjct: 163 SGYAAAKHGVVGLTRNSAV-------EYGRYGIRINAIAPGAIWTPM--VENSMKQLDPE 213
Query: 339 DPILYLASIQPYQPEPR 355
+P P R
Sbjct: 214 NPRKAAEEFIQVNPSKR 230
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 79.5 bits (197), Expect = 4e-17
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 27/154 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAIVTG S+GIG VV LVR G V ++E + + D
Sbjct: 16 VAIVTGGSSGIGLAVVDALVR--YGAKVVSVSLDEKSDVNVSD----------------- 56
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+++DV+NE +V+ + +++G +D+L+NNA + HLT +E R ++V
Sbjct: 57 -----HFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDV 111
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N G + + P++ +I++ S +
Sbjct: 112 NVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA 145
Score = 29.4 bits (67), Expect = 1.7
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPE-PRGRL 358
NAV PG T M + + D I+ + + P GR+
Sbjct: 177 CNAVCPGTIMTPM--VIKAAKMEVGEDENAVERKIEEWGRQHPMGRI 221
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 79.5 bits (197), Expect = 4e-17
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V +++G +G + + G + + Q+
Sbjct: 13 VVVISGVGPALGTTLARRCAE--QGADLVLAARTVERLEDVAKQVTD------------T 58
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTM 124
+ D+++++QV + + +G VDV+INNA + T E + +
Sbjct: 59 GRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFR-VPSMKPFANTTFEHMRDAI 117
Query: 125 EVNYFGLLRICHFLFPLLRQ-SARVIHVTSQCGHVSQ 160
E+ FG LR+ P L + V++V S SQ
Sbjct: 118 ELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQ 154
Score = 32.5 bits (75), Expect = 0.16
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 44/134 (32%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
VDV+INNA + + +D IE + + Q
Sbjct: 88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR------------LIQGF---- 131
Query: 272 QGRHLEKGW----------------PESPYTVSK---IGVSK-LAMVQQNQHFQNGTADL 311
LE+ Y ++K + +S+ LA + G +
Sbjct: 132 -TPALEESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLAT-------ELGEKGI 183
Query: 312 SVNAVNPGYAKTQM 325
VN+V PGY
Sbjct: 184 RVNSVLPGYIWGGT 197
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 79.1 bits (196), Expect = 5e-17
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 18/154 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
AI+TGA GIG + G +V ++ IN A VD+I++
Sbjct: 13 CAIITGAGAGIGKEIAITFAT--AGASVVVSDINADAANHVVDEIQQ------------L 58
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ R D+++E ++ + G VD+L+NNA + ++ R E+
Sbjct: 59 GGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMAD-FRRAYEL 117
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
N F + + P + ++ +TS
Sbjct: 118 NVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN 151
Score = 28.2 bits (64), Expect = 3.8
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 20/52 (38%)
Query: 313 VNAVNPGYAKTQMSNFSGLM------------------EADEAGDPILYLAS 346
VN + PG T ++ + + + L+L S
Sbjct: 184 VNGIAPGAILTDAL--KSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCS 233
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 78.7 bits (195), Expect = 6e-17
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V IVTGA +GIG + + + V + E V +++
Sbjct: 9 VVIVTGAGSGIGRAIAKKFAL--NDSIVVAVELLEDRLNQIVQELRG------------M 54
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
+++ + DVS + VE F + + + +DVL NNA + E R +
Sbjct: 55 GKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLA 114
Query: 126 VNYFGLLRICHFLFP-LLRQ-SARVIHVTSQCGHV 158
VN + + P +L+Q +++ S G
Sbjct: 115 VNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR 149
Score = 29.4 bits (67), Expect = 2.0
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 34/89 (38%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEA- 337
+PYTV+K IG+++ +A G + AV PG KT + G + E
Sbjct: 155 APYTVAKHGLIGLTRSIAA-------HYGDQGIRAVAVLPGTVKTNI--GLGSSKPSELG 205
Query: 338 --------------GDP------ILYLAS 346
+P I++LAS
Sbjct: 206 MRTLTKLMSLSSRLAEPEDIANVIVFLAS 234
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 78.8 bits (195), Expect = 6e-17
Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 17/155 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
IVTG + GIG + + G V + + + +++ K +
Sbjct: 16 TIIVTGGNRGIGLAFTRAVAA--AGANVAVIYRSAADAVEVTEKVGK-----------EF 62
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K K Y+ DVSN V Q I G + LI NA V + E +V
Sbjct: 63 GVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDV 122
Query: 127 NYFGLLRICHFLFPLLRQSAR---VIHVTSQCGHV 158
N FG+ C + L Q + ++ +S +
Sbjct: 123 NVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQI 157
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 15/49 (30%)
Query: 313 VNAVNPGYAKTQMSNFSG---------------LMEADEAGDPILYLAS 346
VNA++PGY T + + +E + L S
Sbjct: 197 VNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILLLS 245
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 78.7 bits (195), Expect = 7e-17
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA++TGA +G G + + + G V + ++ +I
Sbjct: 11 VALITGAGSGFGEGMAKRFAK--GGAKVVIVDRDKAGAERVAGEIG-------------- 54
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAV-HLDYAGHLTKSEKLNRTME 125
+ D+S E+ V+ + + G VD+L+NNA + H L + E+ +R +
Sbjct: 55 -DAALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVG 113
Query: 126 VNYFGLLRICHFLFPLLRQ 144
VN G+ + L P ++
Sbjct: 114 VNVRGVYLMTSKLIPHFKE 132
Score = 31.3 bits (72), Expect = 0.46
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 35/94 (37%)
Query: 279 GWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLME 333
P + Y +K + V+K LA+ + A + V A+NP +T + + M
Sbjct: 153 PRPNLAWYNATKGWVVSVTKALAI-------ELAPAKIRVVALNPVAGETPL--LTTFMG 203
Query: 334 ADEA---------------GDP------ILYLAS 346
D P +L S
Sbjct: 204 EDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCS 237
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 78.4 bits (194), Expect = 1e-16
Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 21/155 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
AIVTG S GIG + + L + G TV + ++ A A V ++
Sbjct: 14 KAIVTGGSKGIGAAIARALDK--AGATVAIADLDVMAAQAVVAGLE-------------- 57
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
VDV+ + V+ Q GG D+L NA V E+ + +V
Sbjct: 58 -NGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDV 116
Query: 127 NYFGLLRICHFLFPLL---RQSARVIHVTSQCGHV 158
N G+ +++ S V
Sbjct: 117 NARGVFLANQIACRHFLASNTKGVIVNTASLAAKV 151
Score = 27.1 bits (61), Expect = 9.8
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPI-----LYLASIQPYQPEPRGRL 358
VN V PG+ KT M + EA+ G Y++ P GR+
Sbjct: 184 VNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLT------PLGRI 228
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 77.6 bits (192), Expect = 1e-16
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 20/159 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V IVTG+ GIG + L R +G V + IN A A QI
Sbjct: 11 VGIVTGSGGGIGQAYAEALAR--EGAAVVVADINAEAAEAVAKQIVA------------D 56
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL---TKSEKLNRT 123
VDVS+ + + GG+D L+NNAA+ E +
Sbjct: 57 GGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKF 116
Query: 124 MEVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHVSQ 160
M VN G L ++ + + +++ +S +
Sbjct: 117 MSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYS 155
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 77.6 bits (192), Expect = 2e-16
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V IVTGAS GIG + + V +G V I++
Sbjct: 10 VVIVTGASMGIGRAIAERFVD--EGSKVIDLSIHDPGEAKYD------------------ 49
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
DV+N QV+ HI +++G + VL+NNA + + R ++V
Sbjct: 50 -----HIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDV 104
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N FG F P + + +++++S +
Sbjct: 105 NLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI 138
Score = 30.2 bits (69), Expect = 0.90
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 24/90 (26%)
Query: 279 GWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLS----VNAVNPGYAKTQMSNFS 329
S Y SK IG++K +A+ D + NAV P T +
Sbjct: 139 ITKNASAYVTSKHAVIGLTKSIAL------------DYAPLLRCNAVCPATIDTPL--VR 184
Query: 330 GLMEADEAGDPILYLASIQPYQPE-PRGRL 358
E + DP+ I + E P R+
Sbjct: 185 KAAELEVGSDPMRIEKKISEWGHEHPMQRI 214
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 77.6 bits (192), Expect = 2e-16
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A++TGA+ GIG ++ + G + ++ + + AA + + + +
Sbjct: 22 RALITGATKGIGADIARAFAA--AGARLVLSGRDVSELDAARRALGEQFGTDVH------ 73
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+D++ + A+ GG+DVL+NNA + T + + T+ V
Sbjct: 74 -----TVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAV 128
Query: 127 NYFGLLRIC-HFLFPLLRQSA--RVIHVTSQCGHVSQIR 162
N + ++ +I V S
Sbjct: 129 NLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPD 167
Score = 33.3 bits (77), Expect = 0.090
Identities = 29/179 (16%), Positives = 49/179 (27%), Gaps = 77/179 (43%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMH------- 264
G+DVL+NNA + +P + + +
Sbjct: 98 GLDVLVNNAGISHP----------------QPVVD-------TDPQLFDATIAVNLRAPA 134
Query: 265 ---QYVEDYQQGRHLEK-----------------GWPE-SPYTVSK---IGVSK-LAMVQ 299
V G+ + P+ Y SK + +K LA
Sbjct: 135 LLASAV-----GKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLAR-- 187
Query: 300 QNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRL 358
+ G + N+V P T+M + + P+ +A I P GR
Sbjct: 188 -----ELGPHGIRANSVCPTVVLTEMG--QRVWGDEAKSAPM--IARI------PLGRF 231
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 77.2 bits (191), Expect = 2e-16
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 20/157 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI--NETAGLAAVDQIKKIYENETIPTKR 64
VA+VTG + GIG + + L DG + + + E + I+
Sbjct: 4 VAMVTGGAQGIGRGISEKLAA--DGFDIAVADLPQQEEQAAETIKLIEA----------- 50
Query: 65 YYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTM 124
+K F +DV++++ ++ A++ GG DVL+NNA + E L +
Sbjct: 51 -ADQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIY 109
Query: 125 EVNYFGLLRIC-HFLFPLLRQ--SARVIHVTSQCGHV 158
VN F + ++I+ S
Sbjct: 110 SVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ 146
Score = 27.1 bits (61), Expect = 9.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 313 VNAVNPGYAKTQM 325
VNA PG T M
Sbjct: 179 VNAYAPGIVGTGM 191
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 77.6 bits (192), Expect = 2e-16
Identities = 27/158 (17%), Positives = 45/158 (28%), Gaps = 24/158 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA++TG ++G+G +V V +G V + +
Sbjct: 7 VALITGGASGLGRALVDRFVA--EGARVAVLDKSAERLRELEVAH--------------- 49
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKL-----N 121
DV + + + G +D LI NA + E +
Sbjct: 50 GGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFD 109
Query: 122 RTMEVNYFGLLRICHFLFP-LLRQSARVIHVTSQCGHV 158
VN G + P L+ V+ S G
Sbjct: 110 DIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY 147
Score = 31.4 bits (72), Expect = 0.41
Identities = 27/173 (15%), Positives = 49/173 (28%), Gaps = 55/173 (31%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQ--LMHQYVED 269
+D LI NA + D E + F D + + +
Sbjct: 79 KIDTLIPNAGI--------WDYSTALADLPEDKIDAAF--DDIFHVNVKGYIHAVKAC-- 126
Query: 270 YQQGRHLEK---------------GWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTA 309
L YT +K +G+ + +A
Sbjct: 127 ---LPALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAF------------ 171
Query: 310 DLS----VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRL 358
+L+ VN V PG T + S L ++++ + ++ P GR+
Sbjct: 172 ELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLK--SVLPIGRM 222
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 77.2 bits (191), Expect = 3e-16
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAI+TGA GIG + L R G V + + ET A +
Sbjct: 13 VAIITGACGGIGLETSRVLAR--AGARVVLADLPETDLAGAAASVG-------------- 56
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHL--DYAGHLTKSEKLNRTM 124
+ VD++NE V G +D++ NNAA D + + T
Sbjct: 57 -RGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTF 115
Query: 125 EVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
VN G + +C + P L +++++S H
Sbjct: 116 TVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA 151
Score = 29.0 bits (66), Expect = 2.4
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 27/84 (32%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEA- 337
+ Y +K +++ +A Q G + NA+ PG +T +
Sbjct: 157 TAYACTKAAIETLTRYVAT-------QYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIF 209
Query: 338 ---------GDP------ILYLAS 346
G+P + +LAS
Sbjct: 210 ATHHLAGRIGEPHEIAELVCFLAS 233
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 76.8 bits (190), Expect = 3e-16
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V I+T A+ GIG R +G V T INE+
Sbjct: 8 VIILTAAAQGIGQAAALAFAR--EGAKVIATDINESKLQELEKYP--------------- 50
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
I+ +DV+ + Q++ F A + +DVL N A + + + +M +
Sbjct: 51 --GIQTRVLDVTKKKQIDQF----ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNL 104
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHVSQIRN 163
N + + P + S +I+++S V + N
Sbjct: 105 NVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVN 143
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 76.8 bits (190), Expect = 3e-16
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTGA++GIG + R +G ++ E AV ++
Sbjct: 8 TILVTGAASGIGRAALDLFAR--EGASLVAVDREERLLAEAVAALE-------------- 51
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ DVS+ VE ++ G + + + A V E + + V
Sbjct: 52 -AEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRV 110
Query: 127 NYFGLLRICHFLFPLLRQSARVIHVTS 153
N G + +L + ++ S
Sbjct: 111 NLTGSFLVARKAGEVLEEGGSLVLTGS 137
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 76.5 bits (189), Expect = 4e-16
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGAS GIG + + L G V +T + A +I
Sbjct: 31 VAVVTGASRGIGAAIARKLGS--LGARVVLTARDVEKLRAVEREIVA------------A 76
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAV-HLDYAGHLTKSEKLNRTME 125
+ + + D+S+ + F + HG DVL+NNA V H K + + +
Sbjct: 77 GGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIA 136
Query: 126 VNYFGLLRICHFLFP-LLRQ-SARVIHVTSQCGHV 158
VN + P ++ +I+++S G
Sbjct: 137 VNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN 171
Score = 30.6 bits (70), Expect = 0.66
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 313 VNAVNPGYAKTQMSN-------FSGLMEADEAGDPILYLAS 346
V+ V PG +T+ G +E D+ D + LA+
Sbjct: 204 VSLVAPGSVRTEFGVGLSAKKSALGAIEPDDIADVVALLAT 244
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 76.5 bits (189), Expect = 4e-16
Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 28/154 (18%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGA+ GIG VV L G V + A +
Sbjct: 30 VALVTGAAGGIGGAVVTALRA--AGARVAVADRAVAGIAADL------------------ 69
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
D+ + + +A G +D+++NNA V T + ++ V
Sbjct: 70 -----HLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGV 124
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N RIC PL+ +++V S G
Sbjct: 125 NVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR 158
Score = 30.2 bits (69), Expect = 1.1
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRL 358
+NAV P T M A DP +A + P GR+
Sbjct: 191 INAVCPNEVNTPMLR---TGFAKRGFDPDRAVAELGRTV--PLGRI 231
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 76.5 bits (189), Expect = 4e-16
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 22/158 (13%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETI 60
M L ++TGAS +G + L+ G + I+ A+V +++
Sbjct: 23 MTLSSA-PILITGASQRVGLHCALRLLE--HG--HRVIISYRTEHASVTELR-------- 69
Query: 61 PTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKL 120
Q D S E+ + F + Q + +++NA+ L +++
Sbjct: 70 ------QAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLA-ETPGEEADNF 122
Query: 121 NRTMEVNYFGLLRICHFLFPLLRQSA--RVIHVTSQCG 156
R V+ I PLL S ++H++
Sbjct: 123 TRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVT 160
Score = 37.9 bits (89), Expect = 0.003
Identities = 16/164 (9%), Positives = 37/164 (22%), Gaps = 51/164 (31%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
+ +++NA+ L + + + +L + + +
Sbjct: 99 SLRAVVHNASEWLA--ETPGEEADNFTRMFSVHMLAPYL--------INLHCEPLLTASE 148
Query: 272 QGR-------HLEKGWPE-SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLS----VNA 315
KG + Y +K ++ A + VN
Sbjct: 149 VADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAA------------RFAPLVKVNG 196
Query: 316 VNPGYAKTQMSNFSGLMEADEA-------GDP------ILYLAS 346
+ P Q + + A + YL
Sbjct: 197 IAPALLMFQPKDDAAYRANALAKSALGIEPGAEVIYQSLRYLLD 240
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 76.8 bits (190), Expect = 4e-16
Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAIVTGA GIG V + L +G V I+ A AA +I
Sbjct: 31 VAIVTGAGAGIGLAVARRLAD--EGCHVLCADIDGDAADAAATKIG-------------- 74
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
RVDVS+E Q+ GGVD L+ NA V + T E +R + +
Sbjct: 75 -CGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAI 133
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N G P + + +++++S G V
Sbjct: 134 NLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV 167
Score = 29.8 bits (68), Expect = 1.4
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 33/90 (36%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQM-----SNFSGLME 333
Y +SK I +S+ A + ++ + N + P + T M + F G +
Sbjct: 173 GAYGMSKAGIIQLSRITAA-------ELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALG 225
Query: 334 ADEA-----------GDP------ILYLAS 346
A A P +++L S
Sbjct: 226 AGGARSMIARLQGRMAAPEEMAGIVVFLLS 255
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 76.2 bits (188), Expect = 5e-16
Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 18/153 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V GA IG + + +G TV+ N V +I+
Sbjct: 9 TVAVIGAGDYIGAEIAKKFAA--EGFTVFAGRRNGEKLAPLVAEIEAAGG---------- 56
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+I +D NE +V F H ++V I N ++++ T + E+
Sbjct: 57 --RIVARSLDARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEM 113
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTSQCGH 157
+ L+ ++ +
Sbjct: 114 ACWAGFVSGRESARLMLAHGQGKIFFTGATASL 146
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 76.0 bits (188), Expect = 5e-16
Identities = 28/160 (17%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAG----LAA--VDQIKKIYENETIP 61
+ +VTGA+ G G + + ++ G ++++++
Sbjct: 2 IVLVTGATAGFGECITRRFIQ--------------QGHKVIATGRRQERLQEL------- 40
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNA--AVHLDYAGHLTKSEK 119
K + + ++DV N + +E + + +D+L+NNA A+ ++ A E
Sbjct: 41 -KDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKA-SVED 98
Query: 120 LNRTMEVNYFGLLRICHFLFPLL--RQSARVIHVTSQCGH 157
++ N GL+ + + P + R +I++ S G
Sbjct: 99 WETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS 138
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 76.1 bits (188), Expect = 6e-16
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 16/155 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTG + GIG + R G V + + A V + ++
Sbjct: 12 SVVVTGGTKGIGRGIATVFAR--AGANVAVAGRSTADIDACVADLDQLG----------- 58
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K+ + DVS+ +Q + ++ GG+DV+ NA V D E+LN V
Sbjct: 59 SGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAV 118
Query: 127 NYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHVS 159
N G L L+ S RV+ +S G ++
Sbjct: 119 NVNGTFYAVQACLDALIASGSGRVVLTSSITGPIT 153
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 76.1 bits (188), Expect = 7e-16
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 24/160 (15%)
Query: 3 LPGPSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETI 60
P VAIVTG GIG + + L G + +T I + + ++
Sbjct: 27 KARP-VAIVTGGRRGIGLGIARALAA--SGFDIAITGIGDAEGVAPVIAELSG------- 76
Query: 61 PTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSE 118
++ F R D+++ S + + + G +D L+NNA + K E
Sbjct: 77 -----LGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPE 131
Query: 119 KLNRTMEVNYFGLLRIC-----HFLFPLLRQSARVIHVTS 153
+ + VN G + L R S +I++TS
Sbjct: 132 NFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITS 171
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 76.0 bits (188), Expect = 8e-16
Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A++TGASTGIG V G V + + A D+I
Sbjct: 34 RALITGASTGIGKKVALAYAEA--GAQVAVAARHSDALQVVADEIAG------------V 79
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K R DV+ QV + + GG+D+ + NA + A E+ R +
Sbjct: 80 GGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDT 139
Query: 127 NYFGLLRIC-HFLFPLLRQ--SARVIHVTSQCGHV 158
N G+ ++ Q +I S GH+
Sbjct: 140 NVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHI 174
Score = 33.7 bits (78), Expect = 0.068
Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 39/91 (42%)
Query: 281 PESPYTVSKIGVSKLAMVQQNQHFQNGTADLS---------VNAVNPGYAKTQMSNFSGL 331
S Y SK V L T ++ VN+V+PGY +T++ L
Sbjct: 180 QVSHYCTSKAAVVHL------------TKAMAVELAPHQIRVNSVSPGYIRTELVEP--L 225
Query: 332 MEADEA----------GDP------ILYLAS 346
+ G P LYLAS
Sbjct: 226 ADYHALWEPKIPLGRMGRPEELTGLYLYLAS 256
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 75.4 bits (186), Expect = 9e-16
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V +VTGAS GIG + L + G TVY+T + + + + +P
Sbjct: 7 VCVVTGASRGIGRGIALQLCK--AGATVYITGRHLDTLRVVAQEAQS-LGGQCVP----- 58
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQ-QHGGVDVLINNAAVHLDYAGHL-------TKSE 118
D S ES+V + + + + Q G +DVL+NNA + + T +
Sbjct: 59 ------VVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPAS 112
Query: 119 KLNRTMEVNYFGLLRICHFLFPLL--RQSARVIHVTS 153
+ V G + L+ ++ ++S
Sbjct: 113 MWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISS 149
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 75.8 bits (187), Expect = 1e-15
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 6 PSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKR 64
V +VTGAS+G G + + V G TV T A V
Sbjct: 5 AKVWLVTGASSGFGRAIAEAAVA--AGDTVIGTARRTEALDDLVAA-------------- 48
Query: 65 YYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTM 124
Y ++ + +DV++ +++ + ++G VDVL+NNA A T +L
Sbjct: 49 -YPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLF 107
Query: 125 EVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHVS 159
E++ FG R+ L P +R+ S V++++S G +S
Sbjct: 108 ELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS 144
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 75.3 bits (186), Expect = 1e-15
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 23/155 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCIN----ETAGLAAVDQIKKIYENETIPTK 63
+V GA IG + +G + AV +I+K
Sbjct: 10 TIVVAGAGRDIGRACAIRFAQ--EG--ANVVLTYNGAAEGAATAVAEIEK---------- 55
Query: 64 RYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT--KSEKLN 121
+ D++N ++VE A + G + L++ A L + +
Sbjct: 56 --LGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGG-LIARKTIAEMDEAFWH 112
Query: 122 RTMEVNYFGLLRICHFLFPLLRQSARVIHVTSQCG 156
+ ++VN L P + + ++ +SQ G
Sbjct: 113 QVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG 147
Score = 27.1 bits (61), Expect = 9.7
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 20/52 (38%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADE------------AGDP------ILYLAS 346
VNAV PG T + + G + +LAS
Sbjct: 182 VNAVCPGMISTTF--HDTFTKPEVRERVAGATSLKREGSSEDVAGLVAFLAS 231
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 75.3 bits (186), Expect = 1e-15
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 22/153 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A+VTG S GIG + Q L+ G V++ + A ++ + + IP
Sbjct: 31 IALVTGGSRGIGQMIAQGLLE--AGARVFICARDAEACADTATRLSAYGDCQAIP----- 83
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
D+S+E+ Q + + +D+L+NNA A + M++
Sbjct: 84 --------ADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQL 135
Query: 127 NYFGLLRICHFLFPLLRQSA------RVIHVTS 153
N + L PLLR+SA RVI++ S
Sbjct: 136 NVTSVFSCIQQLLPLLRRSASAENPARVINIGS 168
Score = 31.8 bits (73), Expect = 0.35
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 25/86 (29%)
Query: 279 GWPESPYTVSK---IGVSK-LA--MVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLM 332
G Y SK +S+ LA +V ++ ++VN + PG ++M+ +
Sbjct: 176 GEQAYAYGPSKAALHQLSRMLAKELVGEH---------INVNVIAPGRFPSRMTR--HIA 224
Query: 333 EADEAGDPILYLASIQPYQPEPRGRL 358
+A + ASI P GR
Sbjct: 225 NDPQALEAD--SASI------PMGRW 242
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 74.9 bits (185), Expect = 1e-15
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 20/150 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAIVTGA+ GIG + + G +V +T + A I++
Sbjct: 14 VAIVTGAAAGIGRAIAGTFAK--AGASVVVTDLKSEGAEAVAAAIRQ------------A 59
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL-TKSEKLNRTME 125
K +V++E E + Q G + VL+NNA +
Sbjct: 60 GGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGP--KPFDMPMSDFEWAFK 117
Query: 126 VNYFGLLRICHFLFP-LLRQ-SARVIHVTS 153
+N F L R+ P + + +++++S
Sbjct: 118 LNLFSLFRLSQLAAPHMQKAGGGAILNISS 147
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 74.5 bits (184), Expect = 2e-15
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAG----LAA--VDQIKKIYENETIP 61
VA++TGAS+GIG + L G +AA V++++ + + +
Sbjct: 9 VALITGASSGIGEATARALAA--------------EGAAVAIAARRVEKLRAL--GDELT 52
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLN 121
K+ +DV++ V+ + GG+D+L+NNA + L +
Sbjct: 53 AA---GAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWT 109
Query: 122 RTMEVNYFGLLRICHFLFP-LLRQSARVIHVTSQCGHV 158
R ++ N GL+ + P LLR V+ ++S G V
Sbjct: 110 RMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV 147
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 74.5 bits (184), Expect = 2e-15
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 19/151 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
V ++TG+STG+G ++ + V + E + +++IKK
Sbjct: 9 VVVITGSSTGLGKSMAIRFAT--EKAKVVVNYRSKEDEANSVLEEIKK------------ 54
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
+ + DV+ ES V N Q ++ G +DV+INNA + + H N+ ++
Sbjct: 55 VGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVID 114
Query: 126 VNYFGLLRICHFLFPLL---RQSARVIHVTS 153
N G VI+++S
Sbjct: 115 TNLTGAFLGSREAIKYFVENDIKGTVINMSS 145
Score = 30.2 bits (69), Expect = 0.86
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 27/126 (21%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
+DV+INNA + + H D I+ L FL + E + +
Sbjct: 85 KLDVMINNAGLENPVSSHEMS-LSDWNKVIDTNLTGAFL---GSREAIKYFVEND----I 136
Query: 272 QGR-------HLEKGWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPG 319
+G H + WP Y SK +++ LA+ + + VN + PG
Sbjct: 137 KGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLAL-------EYAPKGIRVNNIGPG 189
Query: 320 YAKTQM 325
T +
Sbjct: 190 AINTPI 195
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 74.5 bits (184), Expect = 2e-15
Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 38/168 (22%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAA-VDQIKKIYENETIPTKRY 65
++TG+S GIG + R G V + A + + ++
Sbjct: 9 RVLITGSSQGIGLATARLFAR--AGAKVGLHGRKAPANIDETIASMRAD----------- 55
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT--------KS 117
F+ D++ + + GG+DVLINN AG L
Sbjct: 56 -GGDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINN-------AGGLVGRKPLPEIDD 107
Query: 118 EKLNRTMEVNYFGLLRICHFLFPLLRQ-------SARVIHVTSQCGHV 158
+ M+ N ++ F P L ++ VI S GH
Sbjct: 108 TFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHT 155
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 74.5 bits (184), Expect = 2e-15
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
A+VTG+S G+G L +G + + ++ A L ++I+K
Sbjct: 6 CALVTGSSRGVGKAAAIRLAE--NGYNIVINYARSKKAALETAEEIEK------------ 51
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
K+ + +V ++++ Q I + G +DV +NNAA + + + TM
Sbjct: 52 LGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMN 111
Query: 126 VNYFGLLRICHFLFPLL--RQSARVIHVTS 153
+N LL L+ ++ ++S
Sbjct: 112 INAKALLFCAQEAAKLMEKNGGGHIVSISS 141
Score = 30.2 bits (69), Expect = 1.0
Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 32/144 (22%)
Query: 212 GVDVLINNAAVHLDYAGHLTK-SEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDY 270
+DV +NNAA + + + E + + +E +
Sbjct: 82 RLDVFVNNAASGVL--RPVMELEETHWDWTMNINAKALLF---CAQEAAKLMEKN----- 131
Query: 271 QQGR-------HLEKGWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNP 318
G + + VSK +++ LA+ + + VNAV+
Sbjct: 132 GGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAV-------ELSPKQIIVNAVSG 184
Query: 319 GYAKTQMSNFSGLMEADEAGDPIL 342
G T ++ +
Sbjct: 185 GAIDTDA--LKHFPNREDLLEDAR 206
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 74.1 bits (183), Expect = 3e-15
Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 19/157 (12%)
Query: 8 VAIVTGAST--GIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTK 63
V +VTGAS G+G + G V +T V +++K
Sbjct: 22 VVVVTGASGPKGMGIEAARGCAE--MGAAVAITYASRAQGAEENVKELEK---------- 69
Query: 64 RYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRT 123
Y K K Y+ V + E + + G +D I NA D E N
Sbjct: 70 -TYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHV 128
Query: 124 MEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
++V+ G + + ++ S GH+
Sbjct: 129 VQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHI 165
Score = 29.8 bits (68), Expect = 1.2
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 15/49 (30%)
Query: 313 VNAVNPGYAKTQMSNFSG---------------LMEADEAGDPILYLAS 346
VN+++PGY T +S+F A E +Y AS
Sbjct: 199 VNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAKELKGAYVYFAS 247
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 74.1 bits (183), Expect = 3e-15
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 18/150 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TV---YMTCINETAGLAAVDQIKKIYENETIPTK 63
V ++ G +G + + + Y + D+++
Sbjct: 13 VIVIAGGIKNLGALTAKTFAL--ESVNLVLHYHQAKDSDTANKLKDELED---------- 60
Query: 64 RYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRT 123
K+ Y+ D+SNE +V ++ G VD+ IN L T + +
Sbjct: 61 --QGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAM 118
Query: 124 MEVNYFGLLRICHFLFPLLRQSARVIHVTS 153
+N + + +I + +
Sbjct: 119 DTINNKVAYFFIKQAAKHMNPNGHIITIAT 148
Score = 30.2 bits (69), Expect = 1.1
Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 38/139 (27%)
Query: 212 GVDVLINNAAVHLDYAGHLTK-SEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDY 270
VD+ IN L + + SE + + + ++ +
Sbjct: 91 KVDIAINTVGKVLK--KPIVETSEAEFDAMDTINNKVAYF---FIKQAAKHMN------- 138
Query: 271 QQGR-------HLEKGWP-ESPYTVSKIGVSKLAMVQQNQHFQNGTA------DLSVNAV 316
G L S Y +K V +H+ + +SVNA+
Sbjct: 139 PNGHIITIATSLLAAYTGFYSTYAGNKAPV---------EHYTRAASKELMKQQISVNAI 189
Query: 317 NPGYAKTQMSNFSGLMEAD 335
PG T F G +
Sbjct: 190 APGPMDTSF--FYGQETKE 206
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 72.2 bits (178), Expect = 5e-15
Identities = 16/153 (10%), Positives = 48/153 (31%), Gaps = 32/153 (20%)
Query: 9 AIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
++TGA+ G+G R G + ++ A ++
Sbjct: 3 VLITGATGGLG----GAFARALKGHDLLLSGRRAGALAELAREVGARA------------ 46
Query: 68 EKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEVN 127
D+++E + + + ++ G +D+L++ + + + + +
Sbjct: 47 -----LPADLADELEAK----ALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAH 97
Query: 128 YFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
+ ++ AR + + +V
Sbjct: 98 LLTAAF----VLKHARFQKGARAVFFGAYPRYV 126
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 73.4 bits (181), Expect = 5e-15
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
VAIVTGAS GIG + L DG TV + A +I+
Sbjct: 29 VAIVTGASRGIGAAIAARLAS--DGFTVVINYAGKAAAAEEVAGKIEA------------ 74
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
K + DVS+ + V + GGVDVL+NNA + T +R +
Sbjct: 75 AGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIA 134
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVTS 153
VN G LR R+I++++
Sbjct: 135 VNLKGTFNTLREAAQRLRVGGRIINMST 162
Score = 27.9 bits (63), Expect = 5.3
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 11/46 (23%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRL 358
VNAV PG T + G + + P RL
Sbjct: 200 VNAVAPGPTATDL-FLEGKSDEVRDR----FAKLA------PLERL 234
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 73.7 bits (182), Expect = 5e-15
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 16/122 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+AIVTGAS+GIG R +G V +T N A D+I
Sbjct: 10 IAIVTGASSGIGRAAALLFAR--EGAKVVVTARNGNALAELTDEIAGG------------ 55
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
+ DV +E+ E + ++ GG+D NNA E T++
Sbjct: 56 GGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLD 115
Query: 126 VN 127
N
Sbjct: 116 TN 117
Score = 31.7 bits (73), Expect = 0.34
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 31/92 (33%)
Query: 279 GWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLME 333
G+ +PY SK IG+ + LA+ + G + VNA+ PG T + +
Sbjct: 152 GFAGVAPYAASKAGLIGLVQALAV-------ELGARGIRVNALLPGGTDTPANFANLPGA 204
Query: 334 ADEA-------------GDP------ILYLAS 346
A E P LYLAS
Sbjct: 205 APETRGFVEGLHALKRIARPEEIAEAALYLAS 236
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 72.6 bits (179), Expect = 6e-15
Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 23/155 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
++TGAS GIG + L G V + +E A ++
Sbjct: 7 AVLITGASRGIGEATARLLHA--KGYRVGLMARDEKRLQALAAEL--------------- 49
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAV-HLDYAGHLTKSEKLNRTME 125
E DV E + + G + L+NNA V + L E+ ++
Sbjct: 50 -EGALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHEL-TLEEWRLVLD 107
Query: 126 VNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
N G P L R +++V S G
Sbjct: 108 TNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN 142
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 72.5 bits (179), Expect = 9e-15
Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 19/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A++TG + GIG + + +G + + + A I+ +
Sbjct: 9 LAVITGGANGIGRAIAERFAV--EGADIAIADLVPAP--EAEAAIRNL------------ 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++ + DVS VE F + + G D+L+NNA ++ E+ +T E+
Sbjct: 53 GRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEI 112
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N + P +++ R+I++TS +
Sbjct: 113 NVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL 146
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 73.0 bits (180), Expect = 9e-15
Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 20/150 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
VA+ TGA GIG + +L R G +V + + A V ++KK
Sbjct: 23 VALTTGAGRGIGRGIAIELGR--RGASVVVNYGSSSKAAEEVVAELKK------------ 68
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRT 123
+ + D+S S+V GG+D +++N+ + + E ++
Sbjct: 69 LGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVW--CDELEVTQELFDKV 126
Query: 124 MEVNYFGLLRICHFLFPLLRQSARVIHVTS 153
+N G + R+ R+I +S
Sbjct: 127 FNLNTRGQFFVAQQGLKHCRRGGRIILTSS 156
Score = 27.2 bits (61), Expect = 9.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 313 VNAVNPGYAKTQM 325
VN + PG KT M
Sbjct: 195 VNCIAPGGVKTDM 207
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 72.6 bits (179), Expect = 9e-15
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 19/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTG+++GIG + Q L R G + + + A A+ +I + +
Sbjct: 6 TALVTGSTSGIGLGIAQVLAR--AGANIVLNGFGDPA--PALAEIAR------------H 49
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K + D+S+ +Q+E ++ GGVD+L+NNA + E ++ + +
Sbjct: 50 GVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIAL 109
Query: 127 NYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
N + P +R R+I++ S G V
Sbjct: 110 NLSAVFHGTRLALPGMRARNWGRIINIASVHGLV 143
Score = 30.6 bits (70), Expect = 0.78
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 28/126 (22%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
GVD+L+NNA + E I L F T L + +
Sbjct: 79 GVDILVNNAGIQHVAPVEQFPLE-SWDKIIALNLSAVFH---GTRLALPGMRAR-----N 129
Query: 272 QGR-------HLEKGWPE-SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPG 319
GR H G + Y +K +G++K + + + T++++ NA+ PG
Sbjct: 130 WGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGL-------ETATSNVTCNAICPG 182
Query: 320 YAKTQM 325
+ T +
Sbjct: 183 WVLTPL 188
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 72.1 bits (178), Expect = 1e-14
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 23/156 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGAS GIG+ V L G TV T ++ + + +K+
Sbjct: 7 VALVTGASRGIGFEVAHALAS--KGATVVGTATSQASAEKFENSMKEKGF---------- 54
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNRT 123
K + +++S+ ++NF I ++ +D+L+NNA + D +L ++
Sbjct: 55 --KARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRD---NLMMRMSEDEWQSV 109
Query: 124 MEVNYFGLLRICHFLF-PLLRQ-SARVIHVTSQCGH 157
+ N + R+ ++++ R+I + S G
Sbjct: 110 INTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGS 145
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 72.2 bits (178), Expect = 1e-14
Identities = 32/154 (20%), Positives = 45/154 (29%), Gaps = 27/154 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VTGA GIGY V G V T
Sbjct: 9 NVWVTGAGKGIGYATALAFVE--AGAKVTGFDQAFTQEQYPF------------------ 48
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+DV++ +QV Q + + +D L+N A + A E +T V
Sbjct: 49 ----ATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAV 104
Query: 127 NYFGLLRICHFLFPL-LRQ-SARVIHVTSQCGHV 158
N G + RQ ++ V S H
Sbjct: 105 NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT 138
Score = 27.1 bits (61), Expect = 9.4
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 10/50 (20%)
Query: 313 VNAVNPGYAKTQM----SNFSGLMEADEAGDPILYLASIQPYQPEPRGRL 358
N V+PG T M E G + I P G++
Sbjct: 171 CNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGI------PLGKI 214
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 72.6 bits (179), Expect = 1e-14
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA++TGA +GIG L DG TV T D+I
Sbjct: 30 VALITGAGSGIGRATALALAA--DGVTVGALGRTRTEVEEVADEIVGA------------ 75
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HLTKSEKLNRTME 125
+ DVS+E Q+ N + + + G +D+++ NA ++ +A K + + T+
Sbjct: 76 GGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIA 135
Query: 126 VN 127
VN
Sbjct: 136 VN 137
Score = 33.3 bits (77), Expect = 0.11
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRL 358
VNAV PG +T +S+ + L +E P+ + P G+
Sbjct: 205 VNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPI---TDGQP 247
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 72.3 bits (178), Expect = 1e-14
Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 16/154 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA +TG +GIG+ + + +R G + + L A ++ +P
Sbjct: 29 VAFITGGGSGIGFRIAEIFMR--HGCHTVIASRSLPRVLTAARKLAGATGRRCLP----- 81
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+DV V ++ G +D+LIN AA + M++
Sbjct: 82 ------LSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDI 135
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
+ G + L+ ++++T+ G+
Sbjct: 136 DTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR 169
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 72.2 bits (178), Expect = 2e-14
Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 18/156 (11%)
Query: 8 VAIVTGAS-TGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRY 65
V +VT A+ TGIG + + +G V ++ +E DQ+ +
Sbjct: 24 VVLVTAAAGTGIGSTTARRALL--EGADVVISDYHERRLGETRDQLADLGLGRVE----- 76
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
DV++ V+ ++ G +DVL+NNA + E+ +R +
Sbjct: 77 ------AVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLN 130
Query: 126 VNYFGLLRICHFLFPLL---RQSARVIHVTSQCGHV 158
V ++R +++ S G
Sbjct: 131 VTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR 166
Score = 28.3 bits (64), Expect = 3.7
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 313 VNAVNPGYAKTQM 325
+NAV+P A+ +
Sbjct: 199 INAVSPSIARHKF 211
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 72.3 bits (178), Expect = 2e-14
Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 17/155 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAV-DQIKKIYENETIPTKRY 65
A++TG+++GIG + + L + G + + + V D++ + +
Sbjct: 27 TAVITGSTSGIGLAIARTLAK--AGANIVLNGFGAPDEIRTVTDEVAGLSSGTVL----- 79
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
+ D++ S++ + +A + GG D+L+NNA V E+ +R +
Sbjct: 80 ------HHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIA 133
Query: 126 VNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
VN P +++ R+I++ S G V
Sbjct: 134 VNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV 168
Score = 32.6 bits (75), Expect = 0.18
Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 28/160 (17%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
G D+L+NNA V E I L F + + +
Sbjct: 104 GADILVNNAGVQFVEKIEDFPVE-QWDRIIAVNLSSSFH---TIRGAIPPMKKK-----G 154
Query: 272 QGR-------HLEKGWPE-SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPG 319
GR H P S Y +K +G++K +A+ + + ++VN++ PG
Sbjct: 155 WGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVAL-------EVAESGVTVNSICPG 207
Query: 320 YAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRLI 359
Y T + +A G + + + +P + I
Sbjct: 208 YVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFI 247
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 72.3 bits (178), Expect = 2e-14
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAIVTG +TGIG +V++L+ G V + +A D+++
Sbjct: 20 VAIVTGGATGIGKAIVKELLE--LGSNVVIASRKLERLKSAADELQANLPPTK------- 70
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAV 106
Q ++ + ++ NE +V N + G ++ L+NN
Sbjct: 71 QARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 110
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 71.8 bits (177), Expect = 2e-14
Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
A VTG S GIG + + L +G V +T + A V +I++
Sbjct: 33 TAFVTGGSRGIGAAIAKRLAL--EGAAVALTYVNAAERAQAVVSEIEQ------------ 78
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
+ R D + +E + + GG+D+L+N+A + T + M
Sbjct: 79 AGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMA 138
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVTS 153
VN+ L R+I + S
Sbjct: 139 VNFRAPFVAIRSASRHLGDGGRIITIGS 166
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 71.4 bits (176), Expect = 2e-14
Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTGA GIG VQ L G V + + V +
Sbjct: 9 RVLVTGAGKGIGRGTVQALHA--TGARVVAVSRTQADLDSLVRECP-------------- 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
I+ VD+ + E G VD+L+NNAAV L E +R+ EV
Sbjct: 53 --GIEPVCVDLGDWEATER----ALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEV 106
Query: 127 NYFGLLRICHFLFPLLR---QSARVIHVTSQCGHVSQIR 162
N ++++ + L +++V+SQC +
Sbjct: 107 NLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTN 145
Score = 36.7 bits (86), Expect = 0.007
Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 90/187 (48%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMH------- 264
VD+L+NNAAV L +P L+ +T+E +
Sbjct: 76 PVDLLVNNAAVALL----------------QPFLE-------VTKEAFDRSFEVNLRAVI 112
Query: 265 ---QYVEDYQQGRH-LEKGWP-----------------ESPYTVSKIGVSKL--AMVQQN 301
Q V R + +G P S Y +K + L M
Sbjct: 113 QVSQIV-----ARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVM---- 163
Query: 302 QHFQNGTADLS-----VNAVNPGYAKTQMS-------NFSGLM----------EADEAGD 339
+L VNAVNP T M + + M E + +
Sbjct: 164 ------ALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVN 217
Query: 340 PILYLAS 346
IL+L S
Sbjct: 218 AILFLLS 224
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 71.4 bits (176), Expect = 3e-14
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAG----LAA--VDQIKKIYENETIP 61
V ++TGAS GIG + ++L AG L A +I+ I I
Sbjct: 6 VILITGASGGIGEGIARELGV--------------AGAKILLGARRQARIEAI--ATEIR 49
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLN 121
+DV++ V F Q G +DVL+NNA V K ++
Sbjct: 50 DA---GGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWE 106
Query: 122 RTMEVNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
R ++VN G+L + P++ ++S ++I++ S
Sbjct: 107 RMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS 145
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 71.0 bits (175), Expect = 3e-14
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTGA GIG + V+ L G V + ++ +
Sbjct: 9 RALVTGAGKGIGRDTVKALHA--SGAKVVAVTRTNSDLVSLAKECP-------------- 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
I+ VD+ + E G VD+L+NNAA+ + E +R+ V
Sbjct: 53 --GIEPVCVDLGDWDATEK----ALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSV 106
Query: 127 NYFGLLRICHFLFPLLR---QSARVIHVTSQCGHVSQIR 162
N + ++ + + +++V+S HV+
Sbjct: 107 NLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPN 145
Score = 37.1 bits (87), Expect = 0.006
Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 90/187 (48%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMH------- 264
VD+L+NNAA+ + +P L+ +T+E +
Sbjct: 76 PVDLLVNNAALVIM----------------QPFLE-------VTKEAFDRSFSVNLRSVF 112
Query: 265 ---QYVEDYQQGRH-LEKGWP-----------------ESPYTVSKIGVSKL--AMVQQN 301
Q V R + +G P Y+ +K ++ L AM
Sbjct: 113 QVSQMV-----ARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAM---- 163
Query: 302 QHFQNGTADLS-----VNAVNPGYAKTQMS-------NFSGLM----------EADEAGD 339
+L VN+VNP T M F+ + E ++ +
Sbjct: 164 ------AMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVN 217
Query: 340 PILYLAS 346
IL+L S
Sbjct: 218 SILFLLS 224
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 70.6 bits (174), Expect = 3e-14
Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 26/157 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A+VT A G V+ L + DG TV +
Sbjct: 3 IALVTHARHFAGPAAVEALTQ--DGYTVVCHDASFADAAERQ------------------ 42
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG---HLTKSEKLNRT 123
+ + + E + E Q +D +++N + T + +
Sbjct: 43 RFESENPGTIALAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQM 102
Query: 124 MEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
E + + + PL A VI +TS G
Sbjct: 103 FEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK 139
Score = 30.6 bits (70), Expect = 0.64
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 20/54 (37%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEA--------------GDP------ILYLAS 346
+ A+ P + + E + G P I +LAS
Sbjct: 172 LYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITFLAS 225
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 71.1 bits (175), Expect = 4e-14
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTG + GIG + R G V + + + ++ ++
Sbjct: 43 SVLVTGGTKGIGRGIATVFAR--AGANVAVAARSPRELSSVTAELGELG----------- 89
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ R+DVS+ + + + G +DV+ NA + + E+L+ ++V
Sbjct: 90 AGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDV 149
Query: 127 NYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHVS 159
N G + L PL RVI +S G V+
Sbjct: 150 NVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT 184
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 70.7 bits (174), Expect = 4e-14
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 32/162 (19%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAG----LAA--VDQIKKIYENETIP 61
+TGA++G G + AG L ++++ + +
Sbjct: 23 TLFITGATSGFGEACARRFAE--------------AGWSLVLTGRREERLQALAGELSAK 68
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNA--AVHLDYAGHLTKSEK 119
T+ +DV + + + ++ ++ + LINNA A+ D A +
Sbjct: 69 TRVLPLT------LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSC-DLDD 121
Query: 120 LNRTMEVNYFGLLRICHFLFPLLRQSAR---VIHVTSQCGHV 158
+ ++ N GLL L P L ++++ S G
Sbjct: 122 WDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW 163
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 70.7 bits (174), Expect = 4e-14
Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A VTG S+GIG V + L G VY + AAVD ++
Sbjct: 26 TAFVTGVSSGIGLAVARTLAA--RGIAVYGCARDAKNVSAAVDGLRA------------A 71
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ DV++ +V ++ G + +L+N+A + ++
Sbjct: 72 GHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDT 131
Query: 127 NYFGLLRICHFLFPLL----RQSARVIHVTS 153
N G+ R+ + R++++ S
Sbjct: 132 NLTGVFRVTREVLRAGGMREAGWGRIVNIAS 162
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 70.3 bits (173), Expect = 5e-14
Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 17/155 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGL-AAVDQIKKIYENETIPTKRY 65
VA+VTG+++GIG + L G + + + A + + + + +
Sbjct: 6 VAVVTGSTSGIGLGIATALAA--QGADIVLNGFGDAAEIEKVRAGLAAQHGVKVL----- 58
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
+ D+S V + +Q G +D+L+NNA + +EK + +
Sbjct: 59 ------YDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILA 112
Query: 126 VNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGHV 158
+N + P +++ R+I++ S G V
Sbjct: 113 LNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV 147
Score = 29.1 bits (66), Expect = 1.9
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 283 SPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPGYAKTQM 325
S Y +K +G +K A+ + ++ NA+ PG+ +T +
Sbjct: 153 SAYVAAKHGVVGFTKVTAL-------ETAGQGITANAICPGWVRTPL 192
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 70.7 bits (174), Expect = 6e-14
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA +TG TG+G + L G + A +QI N+
Sbjct: 28 VAFITGGGTGLGKGMTTLLSS--LGAQCVIASRKMDVLKATAEQISSQTGNKVHA----- 80
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ DV + V+N + + G +++INNAA + ++
Sbjct: 81 ------IQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDI 134
Query: 127 NYFGLLRICHFLFPLL---RQSARVIHVTSQCGHV 158
G + + L ++ A + +T+
Sbjct: 135 VLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET 169
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 70.3 bits (173), Expect = 6e-14
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 35/160 (21%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAG----LAA--VDQIKKIYENETIP 61
+ ++TGAS+GIG + + G L A V+++K +
Sbjct: 18 LVVITGASSGIGEAIARRFSE--------------EGHPLLLLARRVERLKALNL----- 58
Query: 62 TKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAV-HLDYAGHLTKSEKL 120
+VDV+++ + + +G D ++NNA + L ++ +
Sbjct: 59 ------PNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQ-EANEW 111
Query: 121 NRTMEVNYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
R +VN GLL + + R +I+++S G
Sbjct: 112 QRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK 151
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 69.9 bits (172), Expect = 7e-14
Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 26/154 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V ++TGAS GIG +V+ V T +
Sbjct: 30 VVVITGASQGIGAGLVRAYRD--RNYRVVATSRSIKPSA--------------------- 66
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
I D+S + + ++ G +D L+NNA V L E + + V
Sbjct: 67 DPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGV 126
Query: 127 NYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
N G I +L+Q S ++ +T+
Sbjct: 127 NVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQ 160
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 69.9 bits (172), Expect = 7e-14
Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 16/153 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A+VT S+G+G+ +L R +G + + N AA +I +
Sbjct: 9 LAVVTAGSSGLGFASALELAR--NGARLLLFSRNREKLEAAASRIASLVSG--------- 57
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++ D+ ++ + A+ GG D+L+ + E + + +
Sbjct: 58 -AQVDIVAGDIREPGDIDRLFE-KARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRL 115
Query: 127 NYFGLLRICHFLFPLLRQSA--RVIHVTSQCGH 157
+ + + + R++++ S
Sbjct: 116 LARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLL 148
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 70.0 bits (172), Expect = 9e-14
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 24/168 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
++G S GIG + + + DG V L A TI T
Sbjct: 11 TMFISGGSRGIGLAIAKRVAA--DGANV---------ALVAKSAEPHPKLPGTIYT---A 56
Query: 67 QEKIK-------FYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEK 119
++I+ D+ + V +Q GG+D+ +NNA+ + ++
Sbjct: 57 AKEIEEAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKR 116
Query: 120 LNRTMEVNYFGLLRICHFLFPLLRQS--ARVIHVTSQCGHVSQIRNGT 165
+ + G + P ++ ++ ++ + T
Sbjct: 117 FDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPT 164
Score = 34.9 bits (81), Expect = 0.029
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 42/159 (26%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
G+D+ +NNA+ ++ K ++ + ++Q +++
Sbjct: 93 GIDICVNNASA-INLGSIEEVPLKRFDLMNGIQVRGTYA--------VSQSCIPHMKGRD 143
Query: 272 QGR--------HLEKGWP-ESPYTVSKIGVSKLAMVQQNQHFQNGTA------DLSVNAV 316
LE W +PY ++K G++ A+ G A ++ N +
Sbjct: 144 NPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCAL---------GIAEELRDAGIASNTL 194
Query: 317 NPGYAKT--QMSNFSGLMEA-------DEAGDPILYLAS 346
P + N G EA + D + +
Sbjct: 195 WPRTTVATAAVQNLLGGDEAMARSRKPEVYADAAYVVLN 233
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 69.6 bits (171), Expect = 1e-13
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 23/135 (17%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETI 60
M L V IVTGAS+G+G V + L + TV + AG ++
Sbjct: 3 MQLKS-RVFIVTGASSGLGAAVTRMLAQ-EGATVLGLDLKPPAGEEPAAELG-------- 52
Query: 61 PTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKL 120
++F DV+NE+ Q+ G V L+N A L +S
Sbjct: 53 -------AAVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPG-EKILGRSGPH 104
Query: 121 -----NRTMEVNYFG 130
RT+ VN G
Sbjct: 105 ALDSFARTVAVNLIG 119
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 69.3 bits (170), Expect = 1e-13
Identities = 18/155 (11%), Positives = 40/155 (25%), Gaps = 28/155 (18%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+V G +G VQ V + E +A +K
Sbjct: 9 RVLVYGGRGALGSRCVQAFRA--RNWWVASIDVVENEEASASVIVK-------------- 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQ--QHGGVDVLINNAAV-HLDYAGHLTKSEKLNRT 123
+ S Q + T + + VD ++ A A + + +
Sbjct: 53 --------MTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLM 104
Query: 124 MEVNYFGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
+ + + H L++ + ++
Sbjct: 105 WKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD 139
Score = 37.7 bits (88), Expect = 0.004
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 278 KGWPE-SPYTVSKIGVSKL--AMVQQNQHFQNGTADLSVNAVNPGYAKTQM-------SN 327
G P Y ++K V +L ++ +N +G + AV P T M ++
Sbjct: 139 DGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSG---AAAIAVLPVTLDTPMNRKSMPEAD 195
Query: 328 FSGLMEADEAGDPILYLAS 346
FS + + +
Sbjct: 196 FSSWTPLEFLVETFHDWIT 214
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 69.6 bits (171), Expect = 1e-13
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGA++GIG + + L + +G V++ E + ++++
Sbjct: 24 VALVTGATSGIGLEIARRLGK--EGLRVFVCARGEEGLRTTLKELRE------------A 69
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ DV + ++E + +++G VDVL+NNA A E +E
Sbjct: 70 GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVET 129
Query: 127 N---YFGLLRICHFLFPLLRQ-SARVIHVTS 153
N F + + +L + + R++++ S
Sbjct: 130 NLTGVFRVTKQVLKAGGMLERGTGRIVNIAS 160
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 69.6 bits (171), Expect = 1e-13
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 20/150 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
VA+VTGA GIG + +L R G V + + + V IKK
Sbjct: 31 VALVTGAGRGIGREMAMELGR--RGCKVIVNYANSTESAEEVVAAIKK------------ 76
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRT 123
+ +V + + + G +D++ +N+ V GH+ E+ +R
Sbjct: 77 NGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSF--GHVKDVTPEEFDRV 134
Query: 124 MEVNYFGLLRICHFLFPLLRQSARVIHVTS 153
+N G + + L R+I + S
Sbjct: 135 FTINTRGQFFVAREAYKHLEIGGRLILMGS 164
Score = 27.2 bits (61), Expect = 8.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 313 VNAVNPGYAKTQM 325
VN V PG KT M
Sbjct: 203 VNVVAPGGIKTDM 215
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 69.5 bits (171), Expect = 1e-13
Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTG++ GIG + LV +G V + E + +I+ +Y
Sbjct: 12 TALVTGSTAGIGKAIATSLVA--EGANVLINGRREENVNETIKEIR----------AQYP 59
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
++ D+ E ++ + +++ VD+LINN + E + EV
Sbjct: 60 DAILQPVVADLGTEQGCQD----VIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEV 115
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTSQCG 156
N +R+ + R+ RVI + S+
Sbjct: 116 NIMSGVRLTRSYLKKMIERKEGRVIFIASEAA 147
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 69.1 bits (170), Expect = 1e-13
Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 18/155 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V I+TG S+G+G + + +G V +T + A +I++ +
Sbjct: 8 VVIITGGSSGMGKGMATRFAK--EGARVVITGRTKEKLEEAKLEIEQ------------F 53
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+I ++DV N ++ + I ++ G +D+LINNAA + N + +
Sbjct: 54 PGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINI 113
Query: 127 NYFGLLRICHFLFPLL---RQSARVIHVTSQCGHV 158
G + +I++ +
Sbjct: 114 VLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD 148
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 70.2 bits (172), Expect = 1e-13
Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+TGAS GIG + + DG + + + I
Sbjct: 47 TVFITGASRGIGKAIALKAAK--DGANIVIAAKTAQPHPKLLGTI-----YTAAEEIEAV 99
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K VDV +E Q+ + ++ GG+D+L+NNA+ T +++L+ M V
Sbjct: 100 GGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNV 159
Query: 127 NYFGLLRICHFLFPLLRQS--ARVIHVTSQCG 156
N G P L++S A +++++
Sbjct: 160 NTRGTYLASKACIPYLKKSKVAHILNISPPLN 191
Score = 35.2 bits (81), Expect = 0.033
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 41/158 (25%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
G+D+L+NNA+ + L K + + +L ++ + L +
Sbjct: 129 GIDILVNNASA-ISLTNTLDTPTKRLDLMMNVNTRGTYL---ASKACIPYLKKS-----K 179
Query: 272 QGR--------HLEKGW--PESPYTVSKIGVSKLAMVQQNQHFQNGTA-----DLSVNAV 316
+L W YT++K G+S + G A +++VNA+
Sbjct: 180 VAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVL---------GMAEEFKGEIAVNAL 230
Query: 317 NPGYA-KTQMSNFSG-------LMEADEAGDPILYLAS 346
P A T + G + D D +
Sbjct: 231 WPKTAIHTAAMDMLGGPGIESQCRKVDIIADAAYSIFQ 268
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 68.9 bits (169), Expect = 1e-13
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 42/150 (28%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+ +++G +TGIG + L G + I + +A
Sbjct: 3 IIVISGCATGIGAATRKVLEA--AGHQIVGIDIRDAEVIA-------------------- 40
Query: 67 QEKIKFYRVDVSNESQVEN-FTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
D+S + +A+ G+D L+ AG +++ L +
Sbjct: 41 ---------DLSTAEGRKQAIADVLAKCSKGMDGLVLC-------AGLGPQTKVLGNVVS 84
Query: 126 VNYFGLLRICHFLFPLLRQS--ARVIHVTS 153
VNYFG + P L++ + ++S
Sbjct: 85 VNYFGATELMDAFLPALKKGHQPAAVVISS 114
Score = 38.5 bits (90), Expect = 0.002
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 45/173 (26%)
Query: 212 GVDVLINNA-------------AVHLDYAGHLTKSEKDNQDKIEPALQER---------- 248
G+D L+ A +V+ A L + PAL++
Sbjct: 62 GMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFL-------PALKKGHQPAAVVISS 114
Query: 249 ----FLNDTLTEEELTQLMHQYVEDYQQGRHLEKGWPESPYTVSKIGVSKLAMVQQNQHF 304
L L + + H + Y SK ++ +
Sbjct: 115 VASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWG 174
Query: 305 QNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPY----QPE 353
+ G + +N + PG +T + ++ G+ I + P +P
Sbjct: 175 EAG---VRLNTIAPGATETPLL--QAGLQDPRYGESI--AKFVPPMGRRAEPS 220
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 69.2 bits (170), Expect = 2e-13
Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 25/163 (15%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENET 59
+ L G +TGAS GIG + R DG V + + A I
Sbjct: 2 LTLSGK-TLFITGASRGIGLAIALRAAR--DGANVAIAAKSAVANPKLPGTIHSA----- 53
Query: 60 IPTKRYYQEKIK-------FYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG 112
+ + D+ E QV GG+D+L+NNA+
Sbjct: 54 -------AAAVNAAGGQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGT 106
Query: 113 HLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQS--ARVIHVTS 153
T ++ + +VN G P L Q+ ++ +
Sbjct: 107 LDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAP 149
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 69.1 bits (170), Expect = 2e-13
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 20/150 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
VA+VTG+ GIG V L R G V + + V +IK
Sbjct: 20 VALVTGSGRGIGAAVAVHLGR--LGAKVVVNYANSTKDAEKVVSEIKA------------ 65
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRT 123
+ D+ ++ G +D+ ++N+ V GHL E+ +R
Sbjct: 66 LGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSF--GHLKDVTEEEFDRV 123
Query: 124 MEVNYFGLLRICHFLFPLLRQSARVIHVTS 153
+N G + + L + R++ +S
Sbjct: 124 FSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153
Score = 27.2 bits (61), Expect = 9.3
Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 37/130 (28%)
Query: 212 GVDVLINNAAVHLDYAGHLTK-SEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDY 270
+D+ ++N+ V GHL +E++ + +F + E L
Sbjct: 96 HLDIAVSNSGVVSF--GHLKDVTEEEFDRVFSLNTRGQFF---VAREAYRHLT------- 143
Query: 271 QQGR--------HLEKGWPE-SPYTVSKIGVSKLAMVQQNQHFQNGTA-DL-----SVNA 315
+ GR + P+ S Y+ SK V + V+ + D +VNA
Sbjct: 144 EGGRIVLTSSNTSKDFSVPKHSLYSGSKGAV--DSFVR-------IFSKDCGDKKITVNA 194
Query: 316 VNPGYAKTQM 325
V PG T M
Sbjct: 195 VAPGGTVTDM 204
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 68.5 bits (168), Expect = 2e-13
Identities = 14/152 (9%), Positives = 38/152 (25%), Gaps = 24/152 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
IV G +G +++ + +G TV ++ + +
Sbjct: 5 KVIVYGGKGALGSAILEFFKK--NGYTVLNIDLSANDQADSNILVD-------------- 48
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAV-HLDYAGHLTKSEKLNRTME 125
+ + + Q + Q VD + A A + + ++
Sbjct: 49 ------GNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIK 102
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVTSQCGH 157
+ + L+ + +
Sbjct: 103 QSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM 134
Score = 35.7 bits (83), Expect = 0.015
Identities = 19/159 (11%), Positives = 43/159 (27%), Gaps = 44/159 (27%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
VD + A + K + + ++ + + +
Sbjct: 72 QVDGVFCVAGGW---------AGGSASSKDFVKNADLMIKQSVWS---SAIAAKLA---- 115
Query: 272 QGRHLEKG--------------WPE-SPYTVSKIGVSKL--AMVQQNQHFQNGTADLSVN 314
HL+ G P Y ++K V L ++ ++ + +A V
Sbjct: 116 -TTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSA---VL 171
Query: 315 AVNPGYAKTQM-------SNFSGLMEADEAGDPILYLAS 346
+ P T M ++ S + +L +
Sbjct: 172 TIMPVTLDTPMNRKWMPNADHSSWTPLSFISEHLLKWTT 210
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 68.7 bits (169), Expect = 2e-13
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 16/153 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A+VTGA +GIG V L +G TV ++ A V + +
Sbjct: 9 LALVTGAGSGIGRAVSVRLAG--EGATVAACDLDRAAAQETVRLLG-----GPGSKEGPP 61
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGG-VDVLINNAAVHLDYAGHLT--KSEKLNRT 123
+ ++ DVS + + V+++ A + D L + ++
Sbjct: 62 RGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQD--EFLLHMSEDDWDKV 119
Query: 124 MEVNYFGLLRICHFLFPLL---RQSARVIHVTS 153
+ VN G + L +I+++S
Sbjct: 120 IAVNLKGTFLVTQAAAQALVSNGCRGSIINISS 152
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 68.7 bits (169), Expect = 2e-13
Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTGA+ GIG + + G V + E L +
Sbjct: 29 KALVTGATGGIGEAIARCFHA--QGAIVGLHGTRE-DKLKEI--------------AADL 71
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNRT 123
+ + + ++S+ ++ + ++ G+D+L+NNA + D L + + +
Sbjct: 72 GKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRD---GLFVRMQDQDWDDV 128
Query: 124 MEVNYFGLLRICHFLF-PLLRQ-SARVIHVTSQCGH 157
+ VN + L ++R+ R+I++TS G
Sbjct: 129 LAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGV 164
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 68.4 bits (168), Expect = 3e-13
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCIN----ETAGLAAVDQIKKIYENETIPTK 63
V +VTG S GIG V + R G + +N A A V I +
Sbjct: 28 VVLVTGGSRGIGAAVCRLAAR--QG--WRVGVNYAANREAADAVVAAITE---------- 73
Query: 64 RYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLN 121
+ DV N + + + +Q G +D L+NNA + +DY + E++
Sbjct: 74 --SGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGI-VDYPQRVDEMSVERIE 130
Query: 122 RTMEVNYFGLLRIC-----HFLFPLLRQSARVIHVTS 153
R + VN G + Q +++V+S
Sbjct: 131 RMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS 167
Score = 29.4 bits (67), Expect = 1.5
Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 53/170 (31%)
Query: 212 GVDVLINNAAVHLDYAGHLTK-SEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDY 270
+D L+NNA + +DY + + S + + + + L E + ++ Y
Sbjct: 104 RLDGLVNNAGI-VDYPQRVDEMSVERIERMLRVNVTGSIL---CAAEAVRRMSRLYSGQG 159
Query: 271 QQGR-------HLEKGWP--ESPYTVSKIGVSKLAMVQQNQHFQNGTADLS--------- 312
G G Y SK + T L+
Sbjct: 160 --GAIVNVSSMAAILGSATQYVDYAASKAAIDTF------------TIGLAREVAAEGIR 205
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEA----------GDP------ILYLAS 346
VNAV PG +T + GL + G P ILYL S
Sbjct: 206 VNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILYLLS 255
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 67.9 bits (167), Expect = 3e-13
Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 22/149 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
++TGA+ GIG ++ + +G + I E A + +
Sbjct: 7 AVLITGAAHGIGRATLELFAK--EGARLVACDIEEGPLREAAEAVGA------------- 51
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+DV++ + VE G +D +++ A + D E + V
Sbjct: 52 ----HPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRV 107
Query: 127 NYFGLLRICHFLF-PLLRQ-SARVIHVTS 153
N G + + + ++ S
Sbjct: 108 NLTGSFLVAKAASEAMREKNPGSIVLTAS 136
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 67.9 bits (167), Expect = 3e-13
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 32/157 (20%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
V++VTG++ GIG + + L G TV +T + A ++I Y
Sbjct: 9 VSLVTGSTRGIGRAIAEKLAS--AGSTVIITGTSGERAKAVAEEIAN-----------KY 55
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT--------KSE 118
K +++ +E + + I G+D+L+NNA + T
Sbjct: 56 GVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGI--------TRDKLFLRMSLL 107
Query: 119 KLNRTMEVNYFGLLRICHFLF-PLLRQ-SARVIHVTS 153
++VN G + +++Q R+++++S
Sbjct: 108 DWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISS 144
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 67.9 bits (167), Expect = 3e-13
Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 22/154 (14%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
VA+VTGAS GIG + + L DG V + + V +I+
Sbjct: 9 VALVTGASRGIGRAIAKRLAN--DGALVAIHYGNRKEEAEETVYEIQSN----------- 55
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQ------HGGVDVLINNAAVHLDYAGHLTKSEK 119
++ + VE + + D+LINNA + T +
Sbjct: 56 -GGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQF 114
Query: 120 LNRTMEVNYFGLLRICHFLFPLLRQSARVIHVTS 153
+R + VN I LR ++R+I+++S
Sbjct: 115 FDRMVSVNAKAPFFIIQQALSRLRDNSRIINISS 148
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 68.0 bits (167), Expect = 4e-13
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 23/152 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VAIVTGAS GIG + +L R G V T E K+
Sbjct: 30 VAIVTGASRGIGRAIALELAR--RGAMVIGTATTEAGAEGIGAAFKQ------------A 75
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNRT 123
+ + ++V++ + V+ + ++ G ++VL+NNA + D L K ++ +
Sbjct: 76 GLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGITQD---QLAMRMKDDEWDAV 132
Query: 124 MEVNYFGLLRICHFLF-PLLRQ-SARVIHVTS 153
++ N + R+ + P+++ R++++TS
Sbjct: 133 IDTNLKAVFRLSRAVLRPMMKARGGRIVNITS 164
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 67.7 bits (166), Expect = 4e-13
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 30/155 (19%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETI 60
+ G VA++TG ++G+G + LV + + + + G A ++
Sbjct: 8 RSVKG-LVAVITGGASGLGLATAERLVG-QGASAVLLDLPNSGGEAQAKKLG-------- 57
Query: 61 PTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDY------AGHL 114
F DV++E V+ + G VDV +N A + + G
Sbjct: 58 -------NNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQT 110
Query: 115 TKSEKLNRTMEVNYFGLLRICHFLFPLLRQSARVI 149
E R ++VN G F ++R A +
Sbjct: 111 HTLEDFQRVLDVNLMG-------TFNVIRLVAGEM 138
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 68.0 bits (167), Expect = 4e-13
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGA GIG + + L + V + + + VD+IK +
Sbjct: 46 VALVTGAGRGIGREIAKMLAK--SVSHVICISRTQKSCDSVVDEIKS------------F 91
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNA 104
+ Y DVS + ++ I +H VD+L+NNA
Sbjct: 92 GYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNA 129
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 66.7 bits (164), Expect = 7e-13
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTGA+ GIG + L DG TV ++ IN AA I
Sbjct: 8 TALVTGAAQGIGKAIAARLAA--DGATVIVSDINAEGAKAAAASIG-------------- 51
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+K + D+S+ V+ I GG+D+L+NNA++ A + + ++V
Sbjct: 52 -KKARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDV 110
Query: 127 NYFGLLRICHFLFPL-LRQ--SARVIHVTSQCGHV 158
N G + + RVI + S
Sbjct: 111 NLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA 145
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 66.7 bits (164), Expect = 8e-13
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 26/152 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGAS GIG + + L G V T +E+ A D +
Sbjct: 11 VALVTGASRGIGKAIAELLAE--RGAKVIGTATSESGAQAISDYLG-------------- 54
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNRT 123
+ K ++V+N +E + I + GGVD+L+NNA + D +L K E+ +
Sbjct: 55 -DNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRD---NLLMRMKEEEWSDI 110
Query: 124 MEVNYFGLLRICHFLF-PLLRQ-SARVIHVTS 153
ME N + R+ + ++++ R+I+V S
Sbjct: 111 METNLTSIFRLSKAVLRGMMKKRQGRIINVGS 142
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 66.8 bits (164), Expect = 9e-13
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 24/150 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
AIVT G L G TV + D+++
Sbjct: 3 TAIVTNVKHFGGMGSALRLSE--AGHTVACHDESF----KQKDELEAF------------ 44
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT-KSEKLNRTME 125
+ ++ +E + + + +G VDVL++N ++ E +E
Sbjct: 45 --AETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVE 102
Query: 126 VNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
+ + ++ S +I +TS
Sbjct: 103 ALQIRPFALVNAVASQMKKRKSGHIIFITS 132
Score = 31.0 bits (71), Expect = 0.59
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 35/161 (21%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQYVEDYQ 271
VDVL++N ++ + +D + +E F L +Q+ + +
Sbjct: 72 QVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA---LVNAVASQMKKR-----K 123
Query: 272 QGR-------HLEKGWP-ESPYTVSK---IGVSK-LAMVQQNQHFQNGTADLSVNAVNPG 319
G W S YT ++ ++ L+ + G ++ V A+ P
Sbjct: 124 SGHIIFITSATPFGPWKELSTYTSARAGACTLANALSK-------ELGEYNIPVFAIGPN 176
Query: 320 YAKTQMSNFSGLMEADEAGDPIL--YLASIQPYQPEPRGRL 358
Y ++ S + E + + RL
Sbjct: 177 YLHSEDSPYFYPTEPWKTNPEHVAHVKKVT------ALQRL 211
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 66.9 bits (164), Expect = 1e-12
Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 25/157 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIP------ 61
V +VTG + G G + L E A + D I NE
Sbjct: 12 VVLVTGGARGQGRSHAVKLAE------------EGADIILFDICHDIETNEYPLATSRDL 59
Query: 62 --TKRYYQE---KIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTK 116
++ K VDV + + V + + G +DV++ NA + G
Sbjct: 60 EEAGLEVEKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPL--GAHLP 117
Query: 117 SEKLNRTMEVNYFGLLRICHFLFPLLRQSARVIHVTS 153
+ +V++ G++ H P L A +I S
Sbjct: 118 VQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 66.9 bits (164), Expect = 1e-12
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 31/155 (20%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENET 59
G + AIV+G + G+G V+ L DG V + + G A D++
Sbjct: 26 KQFEG-ASAIVSGGAGGLGEATVRRLHA--DGLGVVIADLAAEKGKALADEL-------- 74
Query: 60 IPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVH-----LDYAGHL 114
+ +F +V++E V + Q ++ + + G
Sbjct: 75 -------GNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSP 127
Query: 115 TKSEKLNRTMEVNYFGLLRICHFLFPLLRQSARVI 149
+T+++ G + + R A I
Sbjct: 128 ADMGGFTKTIDLYLNG-------TYNVARLVAASI 155
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 66.4 bits (163), Expect = 1e-12
Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 19/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTGA +GIG + R G V + D+I
Sbjct: 33 TAVVTGAGSGIGRAIAHGYARA--GAHVLAWGRTD-GVKEVADEIADGGG---------- 79
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ D+++ N + +A VDVL+NNA + + + V
Sbjct: 80 --SAEAVVADLADLEGAANVAEELAA-TRRVDVLVNNAGIIARAPAEEVSLGRWREVLTV 136
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTSQCGHV 158
N + + S R++ + S
Sbjct: 137 NLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ 170
Score = 28.7 bits (65), Expect = 2.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 283 SPYTVSKIGVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQM 325
+ Y SK V L ++ G + VNA+ PGY T
Sbjct: 176 AAYAASKHAVVGLTRALASEWAGRG---VGVNALAPGYVVTAN 215
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 66.4 bits (163), Expect = 1e-12
Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 18/150 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTC-INETAGLAAVDQIKKIYENETIPTKRY 65
+A VTG GIG ++ Q L + DG V C N + ++ K
Sbjct: 15 IAYVTGGMGGIGTSICQRLHK--DGFRVVAGCGPNSPRRVKWLEDQKA------------ 60
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTME 125
+V + + + + G +DVL+NNA + D E ++
Sbjct: 61 LGFDFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVID 120
Query: 126 VNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
N L + + ++ + R+I+++S
Sbjct: 121 TNLTSLFNVTKQVIDGMVERGWGRIINISS 150
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 66.3 bits (163), Expect = 1e-12
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENE 58
M L G AIVTG+S G+G + L G + + T+ A ++ K
Sbjct: 1 MQLKGK-TAIVTGSSRGLGKAIAWKLGN--MGANIVLNGSPASTSLDATAEEFKA----- 52
Query: 59 TIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSE 118
+ + DV N VEN + G +D+L+NNA + D +
Sbjct: 53 -------AGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEK 105
Query: 119 KLNRTMEVNYFGLLRICHFLF-PLLRQ-SARVIHVTS 153
+ + N + +L+Q S ++I++TS
Sbjct: 106 DWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITS 142
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 65.4 bits (160), Expect = 1e-12
Identities = 20/150 (13%), Positives = 37/150 (24%), Gaps = 35/150 (23%)
Query: 9 AIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQE 68
++ GAS +G V + L + V +
Sbjct: 6 ILLIGASGTLGSAVKERLEK--KAEVITAGRHSGD------------------------- 38
Query: 69 KIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEVNY 128
VD++N ++ +Q G VD +++ EK T+
Sbjct: 39 ----VTVDITNIDSIKKM----YEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKL 90
Query: 129 FGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
G + + L T
Sbjct: 91 GGQINLVLLGIDSLNDKGSFTLTTGIMMED 120
Score = 29.5 bits (67), Expect = 1.5
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 313 VNAVNPGYAKTQMSNFSGLME------ADEAGDPILYLASIQPYQ 351
+N V+P + E A + + S+ Q
Sbjct: 152 INTVSPNVLEESWDKLEPFFEGFLPVPAAKVARA--FEKSVFGAQ 194
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 67.7 bits (166), Expect = 1e-12
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 37/158 (23%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTGA+ GIG + + R DG TV ++ A K+
Sbjct: 215 VAVVTGAARGIGATIAEVFAR--DGATVVAIDVDG-AAEDLKRVADKV------------ 259
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGG-VDVLINNAAVHLDYAGHLT--------KS 117
+DV+ + V+ T H+ + HGG VD+L+NNA + T
Sbjct: 260 --GGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI--------TRDKLLANMDE 309
Query: 118 EKLNRTMEVNYFGLLRICHFLFP--LLRQSARVIHVTS 153
++ + + VN R+ L + + RVI ++S
Sbjct: 310 KRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSS 347
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 66.5 bits (163), Expect = 2e-12
Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+A+VTGAS GIG+ + + G T+ IN+ + K
Sbjct: 36 IALVTGASYGIGFAIASAYAKA--GATIVFNDINQELVDRGMAAYKAA------------ 81
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
Y DV++E ++ I + G +D+L+NNA + + + + +++
Sbjct: 82 GINAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDI 141
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTS 153
+ + + P + + ++I++ S
Sbjct: 142 DLNAPFIVSKAVIPSMIKKGHGKIINICS 170
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 66.0 bits (162), Expect = 2e-12
Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A VTGA +GIG + + G + + A A ++
Sbjct: 13 CAAVTGAGSGIGLEICRAFAA--SGARLILIDREAAALDRAAQELG-------------- 56
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
DV++ + V +L+N+A + + T + M V
Sbjct: 57 AAVAARIVADVTDAEAMTAAAAEAEA-VAPVSILVNSAGIARLHDALETDDATWRQVMAV 115
Query: 127 NYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
N G+ F ++ + + ++++ S G +
Sbjct: 116 NVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTI 149
Score = 34.0 bits (79), Expect = 0.062
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 279 GWPESPYTVSKIGVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAG 338
S Y SK V +L + G + VNA+ PGY T+M+ + E E
Sbjct: 153 PQFASSYMASKGAVHQLTRALAAEWAGRG---VRVNALAPGYVATEMT--LKMRERPELF 207
Query: 339 DPIL 342
+ L
Sbjct: 208 ETWL 211
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 65.6 bits (161), Expect = 2e-12
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 23/153 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYM-TCINETAGLAAVDQIKKIYENETIPTKRY 65
A++TGAS GIG + L DG + + N ++ ++
Sbjct: 3 KALITGASRGIGRAIALRLAE--DGFALAIHYGQNREKAEEVAEEARR-----------R 49
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNR 122
+ ++ A+ GG+D L+NNA + D L K E
Sbjct: 50 GSPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRD---TLLVRMKDEDWEA 106
Query: 123 TMEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
+E N + R + +++ R++++TS
Sbjct: 107 VLEANLSAVFRTTREAVKLMMKARFGRIVNITS 139
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 65.7 bits (161), Expect = 2e-12
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 16/149 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA VTG G+G + + L G V ++ ++ ++
Sbjct: 27 VAFVTGGMGGLGAAISRRLHD--AGMAVAVSHSERNDHVSTWLMHER-----------DA 73
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
K Y VDV++ E + + G VDVLINNA + D + M
Sbjct: 74 GRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRT 133
Query: 127 NYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
+ + + F+ ++ + R++++ S
Sbjct: 134 DLDAMFNVTKQFIAGMVERRFGRIVNIGS 162
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 65.3 bits (160), Expect = 3e-12
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
A++T + G+G V + L+ G +V +T + TA + K
Sbjct: 9 HALITAGTKGLGKQVTEKLLA--KGYSVTVTYHSDTTAMETMKETYKD------------ 54
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNA 104
+E+++F + DV+ + + + G +D LINNA
Sbjct: 55 VEERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNA 93
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 65.7 bits (161), Expect = 3e-12
Identities = 28/166 (16%), Positives = 50/166 (30%), Gaps = 27/166 (16%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIY 55
VA +TGA+ G G + D+ V + V ++
Sbjct: 13 VAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA-- 70
Query: 56 ENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT 115
R +I VD + ++ G +D+++ NA V A
Sbjct: 71 ------ANR----RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDI 120
Query: 116 KSEKLNRTMEVNYFGLLRICHFLFPLLR---QSARVIHVTSQCGHV 158
E M++N G P + + +I ++S G
Sbjct: 121 TPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166
Score = 27.5 bits (62), Expect = 7.6
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRLI 359
VN+V+PG T M + + +A + L+ + P +
Sbjct: 199 VNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHV--LTPFLPDWVA 243
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 64.8 bits (159), Expect = 4e-12
Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 18/159 (11%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTG++ G+G+ + L G V + I T +VD + +
Sbjct: 11 TALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGY---------- 58
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
DV++E +E + + VD+LINNA + + E + ++
Sbjct: 59 --DAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDT 116
Query: 127 NYFGLLRICHFLFPLL---RQSARVIHVTSQCGHVSQIR 162
N + + ++I++ S ++
Sbjct: 117 NLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPT 155
Score = 29.0 bits (66), Expect = 2.4
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 38/90 (42%)
Query: 283 SPYTVSKIGVSKLAMVQQNQHFQNGTADLS---------VNAVNPGYAKTQM-------S 326
+PYT +K G+ L T ++ NA+ PGY T M
Sbjct: 157 APYTAAKGGIKML------------TCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDK 204
Query: 327 NFSGLM----------EADEAGDPILYLAS 346
F + +E ++L+S
Sbjct: 205 QFDSWVKSSTPSQRWGRPEELIGTAIFLSS 234
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 64.4 bits (158), Expect = 5e-12
Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 34/158 (21%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
VA+VTGAS GIG + DL + G V + NE VD+IKK
Sbjct: 6 VALVTGASRGIGRAIAIDLAK--QGANVVVNYAGNEQKANEVVDEIKK------------ 51
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT--------KS 117
R DV+N V N + G VD+L+NNA V T K
Sbjct: 52 LGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV--------TKDNLLMRMKE 103
Query: 118 EKLNRTMEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
E+ + + N G+ ++RQ R++++ S
Sbjct: 104 EEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIAS 141
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 64.1 bits (157), Expect = 6e-12
Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+++TGAS+GIG + + L + G V ++ NE + + +K
Sbjct: 16 TSLITGASSGIGSAIARLLHK--LGSKVIISGSNEEKLKSLGNALK-------------- 59
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNRT 123
+ +++N+ + N + +D+L+ NA + D L K + ++
Sbjct: 60 -DNYTIEVCNLANKEECSNL----ISKTSNLDILVCNAGITSD---TLAIRMKDQDFDKV 111
Query: 124 MEVNYFGLLRICHFLF-PLLRQ-SARVIHVTSQCGH 157
+++N + ++++ R+I+++S G
Sbjct: 112 IDINLKANFILNREAIKKMIQKRYGRIINISSIVGI 147
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 63.7 bits (156), Expect = 8e-12
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 34/158 (21%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAV-DQIKKIYENETIPTKRY 65
A+VTGAS GIG ++ L +G V + AV ++IK
Sbjct: 6 SALVTGASRGIGRSIALQLAE--EGYNVAVNYAGSKEKAEAVVEEIKA------------ 51
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT--------KS 117
+ +V++ +V+ + + Q G +DVL+NNA + T K
Sbjct: 52 KGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGI--------TRDNLLMRMKE 103
Query: 118 EKLNRTMEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
++ + ++ N G+ +LRQ S +I+++S
Sbjct: 104 QEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSS 141
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 63.3 bits (155), Expect = 1e-11
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 24/153 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYM-TCINETAGLAAVDQIKKIYENETIPTKRY 65
V +VTGAS GIG + L + G V + + A QI+
Sbjct: 3 VVVVTGASRGIGKAIALSLGK--AGCKVLVNYARSAKAAEEVSKQIEA------------ 48
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNR 122
Y + + DVS E+ VE + G +DV++NNA + D L K + +
Sbjct: 49 YGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRD---TLLIRMKKSQWDE 105
Query: 123 TMEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
+++N G+ ++++ R+I++ S
Sbjct: 106 VIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS 138
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 64.1 bits (157), Expect = 1e-11
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
++TG +GIG V + +G + + ++E K+ E E
Sbjct: 49 NVLITGGDSGIGRAVSIAFAK--EGANIAIAYLDEEGDANET---KQYVEKE----GV-- 97
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT-KSEKLNRTME 125
K D+S+E ++ Q +Q G +++L+NN A G +E+L +T
Sbjct: 98 --KCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFR 155
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVTS 153
+N F + L+Q +I+ S
Sbjct: 156 INIFSYFHVTKAALSHLKQGDVIINTAS 183
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 63.8 bits (156), Expect = 1e-11
Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)
Query: 3 LPGPSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAA-VDQIKKIYENETI 60
P A++TG + IG+++ L + G V + + V ++ +
Sbjct: 9 SECP-AAVITGGARRIGHSIAVRLHQ--QGFRVVVHYRHSEGAAQRLVAELNAARAGSAV 65
Query: 61 PTKRYYQEKIKFYRVDVSNESQVENFTQHI----AQQHGGVDVLINNAAVHLD------- 109
+ D+S S + + + I + G DVL+NNA+ +
Sbjct: 66 L-----------CKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGD 114
Query: 110 ----YAGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQSA-------RVIHVTS 153
A ++ N L + + V+++
Sbjct: 115 DTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD 169
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 63.3 bits (155), Expect = 1e-11
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 27/161 (16%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIY 55
VA +TGA+ G G + + D+ +V + ++
Sbjct: 17 VAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ- 75
Query: 56 ENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT 115
K +DV +++ + +Q G +DV++ NA V
Sbjct: 76 -----------GRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWEL 124
Query: 116 KSEKLNRTMEVNYFGLLRICHFLFPLLR---QSARVIHVTS 153
E+ + + VN G R P + ++ V+S
Sbjct: 125 TDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS 165
Score = 29.1 bits (66), Expect = 2.2
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGR 357
VN+++P +T M +ME ++ P QP
Sbjct: 203 VNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMT 247
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 63.4 bits (155), Expect = 1e-11
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 24/153 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
+A+VTGAS GIG + +L G V + + A V I
Sbjct: 30 IALVTGASRGIGRAIALELAA--AGAKVAVNYASSAGAADEVVAAIAA------------ 75
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNR 122
+ + DVS ES+VE + ++ G +DVL+NNA + D L K +
Sbjct: 76 AGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRD---TLLLRMKRDDWQS 132
Query: 123 TMEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
+++N G+ +L+Q S R+I++ S
Sbjct: 133 VLDLNLGGVFLCSRAAAKIMLKQRSGRIINIAS 165
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 63.3 bits (155), Expect = 1e-11
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
VA+VTG S G+G+ + Q L G +V + N A +K+ E +
Sbjct: 23 VALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAA---QKLTEKYGV------ 71
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
+ +R DVSN +V+ + + ++ G +D ++N A ++ + ++ + +EV
Sbjct: 72 --ETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEV 129
Query: 127 NYFGLLRICHFLFP--LLRQSARVIHVTS 153
N FG +C F + +I++ S
Sbjct: 130 NLFGTYYVCREAFSLLRESDNPSIINIGS 158
Score = 28.6 bits (65), Expect = 3.2
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 38/90 (42%)
Query: 283 SPYTVSKIGVSKLAMVQQNQHFQNGTADLS---------VNAVNPGYAKTQMS------- 326
S Y SK GV+ L T L+ VN + PG+ +T+M+
Sbjct: 170 SAYAASKGGVASL------------TKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDP 217
Query: 327 NFSGLM----------EADEAGDPILYLAS 346
M ++ ++LAS
Sbjct: 218 EKLDYMLKRIPLGRTGVPEDLKGVAVFLAS 247
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 4e-11
Identities = 55/362 (15%), Positives = 105/362 (29%), Gaps = 97/362 (26%)
Query: 48 VDQIKKIYENETIPTKRYYQEKIKFYRV-------DVSNESQVENFTQHIAQQ------- 93
+ IK ++ T+ Y +++ + Y +VS Q + +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 94 -HG----GVDVLINNAAVHLDYAGHLTKSEKLNRTMEVNYFGL-LRICHFLFPLLRQSAR 147
G G + + S K+ M+ F L L+ C+
Sbjct: 155 IDGVLGSGKTWVALDVC----------LSYKVQCKMDFKIFWLNLKNCN------SPETV 198
Query: 148 VIHVTSQCGHVSQIRNGTELQEKFLNDTLTEEELTQLMRQYVEDYQQGRHLEKGKYPGIQ 207
+ + + N T + N L + +R R L+ Y
Sbjct: 199 LEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELR---------RLLKSKPYE--- 244
Query: 208 VHQSGVDVL--INNAAVHLDYAGH-----LTKSEKDNQDKIEPALQERF----LNDTLTE 256
+ + VL + NA + LT K D + A + TLT
Sbjct: 245 ---NCLLVLLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 257 EELTQLMHQYVEDYQQGRHLEKGWPE-----SPYTVSKIGVSKLAMVQQNQHFQNGTAD- 310
+E+ L+ +Y++ + P +P +S I S + ++++ D
Sbjct: 301 DEVKSLLLKYLD------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 311 ------LSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPYQPEPRGRLIWNNKE 364
S+N + P + S + I P LIW +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLS-VFPPSA---HI----------PTILLSLIWFDVI 400
Query: 365 EQ 366
+
Sbjct: 401 KS 402
Score = 44.5 bits (104), Expect = 5e-05
Identities = 36/272 (13%), Positives = 73/272 (26%), Gaps = 64/272 (23%)
Query: 135 CHFLFPLLRQ---SARVIHVTSQCGHVSQIR--------NGTELQEKFLNDTLTEEELTQ 183
C + + + + H+ VS E+ +KF+ + L
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKF 93
Query: 184 LMRQYVEDYQQGRHLEKGKYPGIQVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIEP 243
LM + +Q + Y D L N+ V Y ++++ + K+
Sbjct: 94 LMSPIKTEQRQ-PSMMTRMY------IEQRDRLYNDNQVFAKY--NVSRLQP--YLKLRQ 142
Query: 244 ALQERFLNDTLTEEEL-----------TQLMHQYVEDYQQGRHLEKG--WPESPYTVSKI 290
AL E L + T + Y+ ++ W +
Sbjct: 143 ALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNC 192
Query: 291 GVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEAGDPILYLASIQPY 350
+ + L ++P + + + + + L +PY
Sbjct: 193 NSPETVLEMLQ--------KLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 351 QPEPRGRLIWNNKEEQAWNATPPKTFDHPSKC 382
L+ N NA F+ C
Sbjct: 244 ---ENCLLVLLN----VQNAKAWNAFNL--SC 266
Score = 37.1 bits (85), Expect = 0.010
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 40/178 (22%)
Query: 100 LINNAAVHLDYAGHLTKSEKLNRTMEVNYFGL----LRICHFLFPLLRQSARV------- 148
I + D H+ +KL +E + L R + SA +
Sbjct: 336 SIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 149 ----------IHVTSQCGHVSQI-RNGTE----LQEKFLNDTLTEEELTQLMRQYVEDYQ 193
+ V ++ S + + E + +L + E L R V+ Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 194 QGRHLEKGKYPGIQVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLN 251
+ + + +D + H+ + HL E + + + FL+
Sbjct: 455 IPK-----TFDSDDLIPPYLDQYFYS---HIGH--HLKNIEHPERMTLFRMV---FLD 499
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 61.9 bits (151), Expect = 5e-11
Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 37/170 (21%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENETIPTKRY 65
A+VTGA+ IG + L + G V + + A ++ D++ K N +
Sbjct: 25 AAVVTGAAKRIGRAIAVKLHQ--TGYRVVIHYHNSAEAAVSLADELNKERSNTAVV---- 78
Query: 66 YQEKIKFYRVDVSNE----SQVENFTQHIAQQHGGVDVLINNAAV----------HLDYA 111
+ D++N + E + G DVL+NNA+ H D +
Sbjct: 79 -------CQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNS 131
Query: 112 GHLTKSEKLNRTMEVNYFGLLRICH-------FLFPLLRQSA-RVIHVTS 153
T ++ + N + P S ++++
Sbjct: 132 NGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCD 181
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 61.0 bits (149), Expect = 8e-11
Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 34/152 (22%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTG + GIG + + G V +T +
Sbjct: 23 SVLVTGGNRGIGLAIARAFAD--AGDKVAITYRSGEPP---------------------- 58
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNRT 123
E + D+++ QVE + I + HG V+VLI NA V D L E
Sbjct: 59 -EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKD---QLLMRMSEEDFTSV 114
Query: 124 MEVNYFGLLRIC-HFLFPLLRQ-SARVIHVTS 153
+E N G R+ +LR RV+ ++S
Sbjct: 115 VETNLTGTFRVVKRANRAMLRAKKGRVVLISS 146
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 60.3 bits (147), Expect = 1e-10
Identities = 20/165 (12%), Positives = 45/165 (27%), Gaps = 46/165 (27%)
Query: 7 SVAIVTGASTGIG-----------YNVVQDLVRFYDGTVYMTCINETAGLAA--VDQIKK 53
S+ ++TGAS+G+G L ++
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATY---------------------LTGRSESKLST 40
Query: 54 IYENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGH 113
+ + + D+++ +VE Q ++++A
Sbjct: 41 V--------TNCLSNNVGYRARDLASHQEVEQL---FEQLDSIPSTVVHSAGSGYFGLLQ 89
Query: 114 LTKSEKLNRTMEVNYFGLLRICHFLFP-LLRQSARVIHVTSQCGH 157
E++ +E N + + L Q V+ + S
Sbjct: 90 EQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ 134
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 60.2 bits (147), Expect = 1e-10
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 26/154 (16%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
A+VTG S GIG + + LV G V + N ++ +
Sbjct: 4 KALVTGGSRGIGRAIAEALVA--RGYRVAIASRNPEEAAQSLGAV--------------- 46
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
D+ + + + + GG+ VL++ AAV++ E+ R + +
Sbjct: 47 -----PLPTDLEKD-DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYL 100
Query: 127 NYFGLLRIC-HFLFPLLRQ-SARVIHVTSQCGHV 158
+ + + RV+ + S
Sbjct: 101 HLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFT 134
Score = 27.1 bits (61), Expect = 8.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPIL 342
VN + PGY +T+ + L + E +PI
Sbjct: 169 VNLLCPGYVETEFT--LPLRQNPELYEPIT 196
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 60.2 bits (147), Expect = 1e-10
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 34/152 (22%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+VTG + GIG + Q L DG V +T A
Sbjct: 17 SVLVTGGNRGIGLAIAQRLAA--DGHKVAVTHRGSGAP---------------------- 52
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT---KSEKLNRT 123
+ + VDV++ V+ + + G V+VL++NA + D EK +
Sbjct: 53 -KGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSAD---AFLMRMTEEKFEKV 108
Query: 124 MEVNYFGLLRICHFLF-PLLRQ-SARVIHVTS 153
+ N G R+ + R R+I + S
Sbjct: 109 INANLTGAFRVAQRASRSMQRNKFGRMIFIGS 140
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 60.3 bits (147), Expect = 1e-10
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 38/169 (22%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETI 60
M + +VA+VTG ++G+G + L+ V + I +A +
Sbjct: 5 MEIRD-AVAVVTGGASGLGLATTKRLLD-AGAQVVVLDIRGEDVVADLG----------- 51
Query: 61 PTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKS--- 117
++ +F DV++E+ V + +A+ G + +++N A S
Sbjct: 52 -------DRARFAAADVTDEAAVASALD-LAETMGTLRIVVNCAGTGNA---IRVLSRDG 100
Query: 118 ----EKLNRTMEVNYFGLLRICHFLFPLLRQSARVIHVTSQCGHVSQIR 162
+ +++N G F +LR +A I T G ++ R
Sbjct: 101 VFSLAAFRKIVDINLVG-------SFNVLRLAAERIAKTEPVGPNAEER 142
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 59.9 bits (146), Expect = 2e-10
Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 34/158 (21%)
Query: 8 VAIVTGASTGI-----------GYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYE 56
A+VTG +GI G +V + + E I++
Sbjct: 51 KALVTGGDSGIGRAAAIAYAREGADVA---INYLPA-------EEEDAQQVKALIEE--- 97
Query: 57 NETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT- 115
K D+S+ES + + GG+D+L A
Sbjct: 98 ---------CGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDL 148
Query: 116 KSEKLNRTMEVNYFGLLRICHFLFPLLRQSARVIHVTS 153
SE+ +T VN F L I PLL + A +I +S
Sbjct: 149 TSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 59.9 bits (146), Expect = 3e-10
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 29/162 (17%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIY 55
VA +TGA+ G G + + D+ + DG V Q++
Sbjct: 30 VAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKL-PMSTPDDLAETVRQVEA-- 86
Query: 56 ENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG-HL 114
R +I +VDV + ++ Q G +D+++ NAA+ + +
Sbjct: 87 ------LGR----RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNR 136
Query: 115 TKSEKLNRTMEVNYFGLLRICHFLFPLL---RQSARVIHVTS 153
+ ++VN G P + ++ ++ +S
Sbjct: 137 MDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS 178
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 58.0 bits (141), Expect = 1e-09
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 28/161 (17%)
Query: 8 VAIVTGASTGIG-----------YNVV-QDLVRFYDGTVYMTCINETAGLAAVDQIKKIY 55
VA +TGA+ G G ++V DL R Y + V +++
Sbjct: 48 VAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQG-SPEELKETVRLVEE-- 104
Query: 56 ENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT 115
R +I + DV + + ++ + G +D+L++N +
Sbjct: 105 ------QGR----RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSL 154
Query: 116 KSEKLNRTMEVNYFGLLRICHFLFP-LLRQ--SARVIHVTS 153
++ + ++ N G C + P ++ + VI V+S
Sbjct: 155 TDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSS 195
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 57.8 bits (140), Expect = 2e-09
Identities = 24/186 (12%), Positives = 46/186 (24%), Gaps = 33/186 (17%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENE 58
P VA+VTGA+ +G ++ + L +G V + + A + N
Sbjct: 42 TAPTVP-VALVTGAAKRLGRSIAEGLHA--EGYAVCLHYHRSAAEANALSATLNARRPNS 98
Query: 59 TIPTK------RYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLD--- 109
I + V+ ++ G DVL+NNA+
Sbjct: 99 AITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPL 158
Query: 110 -----------YAGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQSA--------RVIH 150
N + + + +I+
Sbjct: 159 LRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIIN 218
Query: 151 VTSQCG 156
+
Sbjct: 219 MVDAMT 224
Score = 31.3 bits (71), Expect = 0.54
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 32/137 (23%)
Query: 212 GVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDT----------LTEEELTQ 261
DVL+NNA+ + + E D L + +
Sbjct: 142 RCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 201
Query: 262 LMHQYVEDYQQ-GR-------HLEKGWPESP-YTVSK---IGVSK-LAMVQQNQHFQNGT 308
+ + + YT++K G+++ A+ +
Sbjct: 202 VAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAAL-------ELAP 254
Query: 309 ADLSVNAVNPGYAKTQM 325
+ VN V PG + +
Sbjct: 255 LQIRVNGVGPGL--SVL 269
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 57.2 bits (139), Expect = 2e-09
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 29/132 (21%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIY 55
VA +TGA+ G G + DL Y A V ++ I
Sbjct: 15 VAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPY-PLATPEELAATVKLVEDI- 72
Query: 56 ENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLT 115
+I + DV + + Q + G +D+++ NA + A
Sbjct: 73 -----------GSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI----APMSA 117
Query: 116 KSEKLNRTMEVN 127
+ + ++VN
Sbjct: 118 GDDGWHDVIDVN 129
Score = 29.1 bits (66), Expect = 2.1
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 313 VNAVNPGYAKTQM--SNFSGLMEADEAGDPILYLASIQPYQPEPRG 356
VN+++P +T M + F+ A A ++ P
Sbjct: 200 VNSIHPSGVETPMINNEFTREWLAKMAAATDT-PGAMGNAMPVEVL 244
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 57.4 bits (139), Expect = 2e-09
Identities = 24/186 (12%), Positives = 46/186 (24%), Gaps = 33/186 (17%)
Query: 1 MWLPGPSVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCI-NETAGLAAVDQIKKIYENE 58
P VA+VTGA+ +G ++ + L +G V + + A + N
Sbjct: 5 TAPTVP-VALVTGAAKRLGRSIAEGLHA--EGYAVCLHYHRSAAEANALSATLNARRPNS 61
Query: 59 TIPTK------RYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLD--- 109
I + V+ ++ G DVL+NNA+
Sbjct: 62 AITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPL 121
Query: 110 -----------YAGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQSA--------RVIH 150
N + + + +I+
Sbjct: 122 LRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIIN 181
Query: 151 VTSQCG 156
+
Sbjct: 182 MVDAMT 187
Score = 31.9 bits (73), Expect = 0.30
Identities = 22/191 (11%), Positives = 50/191 (26%), Gaps = 50/191 (26%)
Query: 158 VSQIRNGTELQEKFLNDTLTEEELTQLMRQYVEDYQQGRHLEKGKYPGIQVHQSGVDVLI 217
+S + +L+ + GR DVL+
Sbjct: 69 LSNVATAPVSGADGSAPVTLFTRCAELVAACYTHW--GR----------------CDVLV 110
Query: 218 NNAAVHLD-YAGHLTKSEKDNQDKIEPALQERFLN--DT-------LTEEELTQLMHQYV 267
NNA+ + + A++ + + L + ++
Sbjct: 111 NNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPA 170
Query: 268 EDYQQ-GR-------HLEKGWPESP-YTVSK---IGVSK-LAMVQQNQHFQNGTADLSVN 314
+ + YT++K G+++ A+ + + VN
Sbjct: 171 KHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAAL-------ELAPLQIRVN 223
Query: 315 AVNPGYAKTQM 325
V PG + +
Sbjct: 224 GVGPGL--SVL 232
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 57.2 bits (139), Expect = 2e-09
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 28/136 (20%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVD---QIKKIYENETIP--- 61
VA VTGA+ G G + L + E A + AVD I+ + IP
Sbjct: 13 VAFVTGAARGQGRSHAVRLAQ------------EGADIIAVDICKPIRAGVVDTAIPAST 60
Query: 62 ------TKRYYQE---KIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAG 112
T + +I VDV + ++ +Q G +D+++ NA +
Sbjct: 61 PEDLAETADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDT 120
Query: 113 -HLTKSEKLNRTMEVN 127
T E +++N
Sbjct: 121 LDKTSEEDWTEMIDIN 136
Score = 29.1 bits (66), Expect = 2.0
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 278 KGWP-ESPYTVSKIGVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLME--- 333
K +P Y +K GV L + G + VN+V+P + KT M + G +
Sbjct: 170 KAYPHTGHYVAAKHGVVGLMRAFGVEL---GQHMIRVNSVHPTHVKTPMLHNEGTFKMFR 226
Query: 334 ---ADEAGDPILYLASIQPYQPEPRGR 357
+ D + + + P P
Sbjct: 227 PDLENPGPDDMAPICQMFHTLPIPWVE 253
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 56.8 bits (138), Expect = 3e-09
Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 25/159 (15%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIP------ 61
A++TG + G+G + L A +A D+ +
Sbjct: 12 TALITGGARGMGRSHAVALAE------------AGADIAICDRCENSDVVGYPLATADDL 59
Query: 62 --TKRYYQE---KIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTK 116
T ++ + +VDV + + +E+F GG+D+ I NA + +
Sbjct: 60 AETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVE 119
Query: 117 SEKLNRTMEVNYFGLLRICHFLFP-LLRQ-SARVIHVTS 153
S + + + N G + P ++++ R++ V+S
Sbjct: 120 SAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSS 158
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 54.9 bits (133), Expect = 7e-09
Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 39/147 (26%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
A+VTG ++G+G L G + +D
Sbjct: 4 SALVTGGASGLGRAAALALKA--RG----------YRVVVLDL------RRE-------G 38
Query: 68 EKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKL-----NR 122
E + + DV+ E V AQ+ + +++ A V L L K R
Sbjct: 39 EDLIYVEGDVTREEDVRRAVA-RAQEEAPLFAVVSAAGVGLA-EKILGKEGPHGLESFRR 96
Query: 123 TMEVNYFGLLRICHFLFPLLRQSARVI 149
+EVN G F +LR +A +
Sbjct: 97 VLEVNLLG-------TFNVLRLAAWAM 116
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 54.3 bits (131), Expect = 2e-08
Identities = 39/176 (22%), Positives = 58/176 (32%), Gaps = 49/176 (27%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKK-- 53
V IVTGA GIG VV D+ DG+ +A + VD+I
Sbjct: 29 VVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGS---PASGGSAAQSVVDEITAAG 85
Query: 54 -----IYENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHL 108
+V++ Q Q + GG+DVL+NNA +
Sbjct: 86 GEAVADGS-------------------NVADWDQAAGLIQTAVETFGGLDVLVNNAGIVR 126
Query: 109 DYAGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQ--------SARVIHVTSQCG 156
D T E+ + + V+ G R R+I+ +S G
Sbjct: 127 DRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG 182
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 54.3 bits (131), Expect = 3e-08
Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 43/168 (25%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKK-- 53
V I+TGA G+G VV DL +G N A VD+I K
Sbjct: 10 VVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQG----GNSKAADVVVDEIVKNG 65
Query: 54 ---IYENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDY 110
+ D +N + + + G V V+INNA + D
Sbjct: 66 GVAV--------------------ADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDA 105
Query: 111 AGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCG 156
+ + ++V+ G + +P ++ R+++ +S G
Sbjct: 106 SMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAG 153
Score = 43.1 bits (102), Expect = 1e-04
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 95 GGVDVLINNAAVHLDYAGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQ--SARVIHVT 152
G +D+L+NNA + D + ++ + +V+ G + +P + R+I++T
Sbjct: 394 GTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINIT 453
Query: 153 SQCG 156
S G
Sbjct: 454 STSG 457
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 52.6 bits (127), Expect = 5e-08
Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 42/151 (27%)
Query: 7 SVAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRY 65
SV +TG+++GIG + + L R G TV + A + A
Sbjct: 2 SVIAITGSASGIGAALKELLAR--AGHTVIGIDRGQ-ADIEA------------------ 40
Query: 66 YQEKIKFYRVDVSNESQVENFTQHIAQQHGGV-DVLINNAAVHLDYAGHLTKSEKLNRTM 124
D+S E + + GGV D L+ A V + +
Sbjct: 41 ----------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVG-------VTAANSGLVV 83
Query: 125 EVNYFGLLRICHFLFPLLRQS--ARVIHVTS 153
VNYFG+ + L L + + V S
Sbjct: 84 AVNYFGVSALLDGLAEALSRGQQPAAVIVGS 114
Score = 33.0 bits (76), Expect = 0.12
Identities = 15/88 (17%), Positives = 22/88 (25%), Gaps = 25/88 (28%)
Query: 279 GWPESPYTVSKIGVSKLAMVQQNQHFQNGTADLSVNAVNPGYAKTQMSNFSGLMEADEA- 337
G Y SK V+ LA + +N V PG +T +
Sbjct: 147 GQTHLAYAGSKYAVTCLARRNVVDW---AGRGVRLNVVAPGAVETPL--LQASKADPRYG 201
Query: 338 -------------GDP------ILYLAS 346
+P I +L
Sbjct: 202 ESTRRFVAPLGRGSEPREVAEAIAFLLG 229
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 53.3 bits (128), Expect = 7e-08
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 39/167 (23%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIY 55
VA+VTGA G+G VV DL + G ++ A VD+I+K
Sbjct: 21 VAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDG----ASQRAADIVVDEIRKAG 76
Query: 56 ENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQ---QHGGVDVLINNAAVHLDYAG 112
V++ + V + + I G VD+L+NNA + D +
Sbjct: 77 GE------------------AVADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSL 118
Query: 113 HLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCGH 157
T + N +V+ G + FP +++ R+I +S G
Sbjct: 119 VKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGI 165
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 52.4 bits (126), Expect = 8e-08
Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 43/168 (25%)
Query: 8 VAIVTGASTGIGYN------------VVQDLVRFYDGTVYMTCINETAGLAAVDQIKK-- 53
V +VTGA G+G VV DL + G +A V++I++
Sbjct: 11 VVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVG----KGSSAADKVVEEIRRRG 66
Query: 54 ---IYENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDY 110
+ + + E + G +DV++NNA + D
Sbjct: 67 GKAV--------------------ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDR 106
Query: 111 AGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQ--SARVIHVTSQCG 156
+ E + V+ G ++ + +++ R+I S G
Sbjct: 107 SFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASG 154
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 46.8 bits (112), Expect = 4e-06
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 32/149 (21%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDG-TVYMTCINETAGLAAVDQIKKIYENETIPTKRYY 66
+V AS GIG V L + +G V + NE + +
Sbjct: 21 GVLVLAASRGIGRAVADVLSQ--EGAEVTICARNEELLKRSGHRYVV------------- 65
Query: 67 QEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEV 126
D+ + + + ++ VD+L+ NA +E ++
Sbjct: 66 --------CDLRKDLDL------LFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDS 111
Query: 127 NYFGLLRICHFLFPLL--RQSARVIHVTS 153
+ +++I P + + R++ +TS
Sbjct: 112 LFLNMIKIVRNYLPAMKEKGWGRIVAITS 140
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 46.4 bits (110), Expect = 1e-05
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 59/178 (33%)
Query: 8 VAIVTGASTG-IGYNVVQDLVRFYDG--TVYMTCINETAGLAAVDQIKKIYENETIPTKR 64
++TGA G IG V+Q L++ G V +T +
Sbjct: 478 YVLITGAGKGSIGAEVLQGLLQ---GGAKVVVTTSRFSK-----------------QVTD 517
Query: 65 YYQEKIKFYRVDVSNESQ-------------VENFTQHI--AQQHGGV----DVLINNAA 105
YYQ Y + S VE + I +++GG+ D +I AA
Sbjct: 518 YYQS---IYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAA 574
Query: 106 VH-----LDYAGHLTKSEKLNRTMEVNYFGLLRICHFLFPLLRQSARVIHVTSQCGHV 158
+ L++ +KSE +R M N +LR + +++ + ++ V
Sbjct: 575 IPEQGIELEHID--SKSEFAHRIMLTN---ILR----MMGCVKKQKSARGIETRPAQV 623
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 44.1 bits (104), Expect = 4e-05
Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 23/129 (17%)
Query: 8 VAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQ 67
A+V + +G L V + AA D + K ++
Sbjct: 121 KAVVLAGTGPVGMRSAALLAG-EGAEVVLCGRKLDKAQAAADSVNKRFKVNVTA------ 173
Query: 68 EKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAA--VHLDYAGHLTKSEKLNRTME 125
+ ++++ G + A + L + +
Sbjct: 174 -------AETADDASRAEAV-------KGAHFVFTAGAIGLELLPQAAWQNESSIEIVAD 219
Query: 126 VNYFGLLRI 134
N L I
Sbjct: 220 YNAQPPLGI 228
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 37.9 bits (89), Expect = 0.003
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 72 FYRVDVSNESQVENFTQHIAQQHGGVDVLI------NNAAVHLDYAGHLTKSEKLNRTME 125
+R DV+ + +++ + + GG+D L+ A+ Y T+ + +E
Sbjct: 62 LFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYID--TRRQDWLLALE 119
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVT 152
V+ + L+ + PLLR+ ++ +T
Sbjct: 120 VSAYSLVAVARRAEPLLREGGGIVTLT 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 45/264 (17%), Positives = 76/264 (28%), Gaps = 90/264 (34%)
Query: 60 IPTKRYY---QEKIKFYR--------VDVSNE--SQVE---NFTQHIA----QQHGG--V 97
+PT ++ Q + +F + +E + E F +++ G
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 98 DVL-----------INNAAVHLDYAGHLTKSE--KLNRTMEV--NYFGLLRICHFLFPLL 142
VL + +H A L + L +T E+ NY + F
Sbjct: 82 QVLNLCLTEFENCYLEGNDIH-ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 143 RQSARVIHVTSQCGHVSQIRNGTELQ---EKFLNDTLTEEELTQLMRQYVEDYQQGRHLE 199
SA V + I G Q + + EEL L YQ
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGG---QGNTDDYF------EELRDL-------YQ------ 178
Query: 200 KGKYPGIQVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQ-ERFLNDTLT--E 256
Y + V LI +A L L ++ D + L +L + +
Sbjct: 179 --TYHVL------VGDLIKFSAETLS---ELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 257 EE-------------LTQLMHQYV 267
++ + QL H V
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVV 251
Score = 29.2 bits (65), Expect = 3.0
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 55/154 (35%)
Query: 6 PSVAIVTGASTGIG-Y-------NV--VQDLVR--FYDGTVYMTCI------NETAGLAA 47
P+ A G S +G Y +V ++ LV FY G + G+ A
Sbjct: 1754 PADATFAGHS--LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 48 VDQIKKIYENETIPTKRYYQEKIKFYRVDVS-NESQVENFTQHIAQQHGGVDVLI-N-NA 104
++ P RV S ++ ++ + + ++ G + V I N N
Sbjct: 1812 IN-----------PG-----------RVAASFSQEALQYVVERVGKRTGWL-VEIVNYNV 1848
Query: 105 A----VHLDYAGHLTKSEKLNRTMEVNYFGLLRI 134
V AG L + + + N+ L +I
Sbjct: 1849 ENQQYV---AAGDLRALDTVTNVL--NFIKLQKI 1877
Score = 28.9 bits (64), Expect = 3.8
Identities = 36/226 (15%), Positives = 57/226 (25%), Gaps = 73/226 (32%)
Query: 140 PL-LRQ-SARV-IHV-TSQCGHVSQIRNGTELQEKFLNDTLTEEELTQLMRQYVEDYQQG 195
PL L S + V T+ SQ LQE+F L + + D +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQ------LQEQFNKI------LPEPTEGFAADDEPT 55
Query: 196 RHLEKGKYPGIQVHQSGVDVLINNAAVHLDYAGHLTKSEKDNQDKIEPALQ---ERFLND 252
E L L Y L E + + L F N
Sbjct: 56 TPAE----------------L---VGKFLGYVSSLV--EPSKVGQFDQVLNLCLTEFENC 94
Query: 253 TLTEEELTQLMHQYVEDYQQGRHLEKGWPESPYTVSKIGVSKLAMVQQNQHFQNGTADLS 312
L ++ L + +++ K ++ T A + + F +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT---------ARIMAKRPFDKKSN--- 142
Query: 313 VNAVNPGYAKTQMSNFSGLMEADEAGDPILYLA-----SIQPYQPE 353
S L A G+ L + Y E
Sbjct: 143 ----------------SALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 37.5 bits (88), Expect = 0.005
Identities = 8/83 (9%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLI------NNAAVHLDYAGHLTKSEKLNRTMEVNYF 129
DV+ ++ ++ + + D + + DY +T+ E +++ +
Sbjct: 67 DVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTR-EGFKIAHDISSY 125
Query: 130 GLLRICHFLFPLLRQSARVIHVT 152
+ + +L + ++ ++
Sbjct: 126 SFVAMAKACRSMLNPGSALLTLS 148
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLI------NNAAVHLDYAGHLTKSEKLNRTMEVNYF 129
DV ++ +V N + I + G +D + N + ++ T E +++ +
Sbjct: 92 DVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSE--TSREGFLLAQDISSY 149
Query: 130 GLLRICHFLFPLLRQSARVIHVT 152
L + H L+ + ++ T
Sbjct: 150 SLTIVAHEAKKLMPEGGSIVATT 172
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 36.8 bits (86), Expect = 0.008
Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLI------NNAAVHLDYAGHLTKSEKLNRTMEVNYF 129
DV++++Q++ + +D L+ A+ D+ LT+ E +++ +
Sbjct: 72 DVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTR-ENFRIAHDISAY 130
Query: 130 GLLRICHFLFPLLRQSARVIHVT 152
+ P+L A ++ ++
Sbjct: 131 SFPALAKAALPMLSDDASLLTLS 153
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 36.4 bits (85), Expect = 0.011
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLI------NNAAVHLDYAGHLTKSEKLNRTMEVNYF 129
DVS E ++ + + G +D ++ A+ T N ME++ +
Sbjct: 64 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLE--TSKSAFNTAMEISVY 121
Query: 130 GLLRICHFLFPLLRQSARVIHVT 152
L+ + + L PLL A V+ ++
Sbjct: 122 SLIELTNTLKPLLNNGASVLTLS 144
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 36.2 bits (83), Expect = 0.015
Identities = 18/101 (17%), Positives = 24/101 (23%)
Query: 5 GPSVAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKR 64
GP +V GASTG G
Sbjct: 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAA 105
Query: 65 YYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAA 105
K D ++ + I Q G VD +I + A
Sbjct: 106 QKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 35.7 bits (83), Expect = 0.016
Identities = 5/74 (6%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLI------NNAAVHLDYAGHLTKSEKLNRTMEVNYF 129
DV ++ ++++ + + G+D ++ + ++ E + +++ +
Sbjct: 83 DVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFI-DCVTREGFSIAHDISAY 141
Query: 130 GLLRICHFLFPLLR 143
+ +++
Sbjct: 142 SFAALAKEGRSMMK 155
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 35.2 bits (82), Expect = 0.021
Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLI------NNAAVHLDYAGHLTKSEKLNRTMEVNYF 129
DV+N++++E I +Q G + + N + +Y T + ++ +
Sbjct: 67 DVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLN--TNRDGFLLAHNISSY 124
Query: 130 GLLRICHFLFPLLRQSARVIHVT 152
L + P++ + ++ +T
Sbjct: 125 SLTAVVKAARPMMTEGGSIVTLT 147
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 34.9 bits (81), Expect = 0.031
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYA------GHL--TKSEKLNRTMEVN 127
DVS+ V+N + +A++ G +D +++ A ++ G T +M ++
Sbjct: 88 DVSDAESVDNMFKVLAEEWGSLDFVVHAVA----FSDKNELKGRYVDTSLGNFLTSMHIS 143
Query: 128 YFGLLRICHFLFPLLRQSARVIHVT 152
+ I PL+ ++ ++
Sbjct: 144 CYSFTYIASKAEPLMTNGGSILTLS 168
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766,
riken ST genomics/proteomics initiative, RSGI, NPPSFA;
2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1
c.23.4.1
Length = 457
Score = 35.3 bits (82), Expect = 0.032
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 7 SVAIVTGAST---GIGYNVVQDLVRFYDGTVYMTCIN----ETAGLAAVDQIKKI 54
+A++ GAS +GY V ++L + G VY +N E G+ A +K I
Sbjct: 10 GIAVI-GASNDPKKLGYEVFKNLKEYKKGKVYP--VNIKEEEVQGVKAYKSVKDI 61
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 34.9 bits (81), Expect = 0.032
Identities = 12/85 (14%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 76 DVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYA------GHL--TKSEKLNRTMEVN 127
DV++ + ++ + + ++ G +D L++ ++ G T TM ++
Sbjct: 89 DVADAASIDAVFETLEKKWGKLDFLVHAIG----FSDKDELTGRYIDTSEANFTNTMLIS 144
Query: 128 YFGLLRICHFLFPLLRQSARVIHVT 152
+ L + L+ ++ +T
Sbjct: 145 VYSLTAVSRRAEKLMADGGSILTLT 169
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 33.7 bits (77), Expect = 0.092
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 2 WLPGPSVAIVTGASTG-IGYNVVQDLVRFYD--GTVYMTCIN-ETAGLAAVDQIKKIYEN 57
P ++TGA TG +G +V +L+R D G + C+ + A +++K +++
Sbjct: 69 PSPELRTVLLTGA-TGFLGRYLVLELLRRLDVDGRLI--CLVRAESDEDARRRLEKTFDS 125
Query: 58 ETIPTKRYYQE----KIKFYRVDVSNE----SQVENFTQHIAQQHGGVDVLINNAAV--H 107
R+++E +++ D S Q + + +A+ VD+++++AA+
Sbjct: 126 GDPELLRHFKELAADRLEVVAGDKSEPDLGLDQ-PMW-RRLAET---VDLIVDSAAMVNA 180
Query: 108 LDYAGH 113
Y
Sbjct: 181 FPYHEL 186
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 33.6 bits (76), Expect = 0.10
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 1/102 (0%)
Query: 5 GPSVAIVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKR 64
GP +V GAS+G G + + + +
Sbjct: 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAK 119
Query: 65 YYQEKIKFYRVDVSNESQVENFTQHIAQQHGG-VDVLINNAA 105
K D +++ + I + GG VD+++ + A
Sbjct: 120 AAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLA 161
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU;
2.64A {Bacteroides thetaiotaomicron}
Length = 325
Score = 33.5 bits (77), Expect = 0.10
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 31 DGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQEKIKFYRVDVSNESQVENFTQHI 90
D + T I T G + I E + P K + VD +N ++ T HI
Sbjct: 236 DSVLDATFIYPTNGDKVLQLAMDILEKKPYP-KETV---MNTAVVDRTNAHVMQLQTTHI 291
Query: 91 AQQHGGVDVL 100
++ ++ L
Sbjct: 292 SELDKKIETL 301
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 33.5 bits (77), Expect = 0.11
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 32/125 (25%)
Query: 10 IVTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQEK 69
+VTG+S IG +V L Y + A D +++
Sbjct: 3 LVTGSSGQIGTELVPYLAEKYGKKN----------VIASDIVQRDTGG------------ 40
Query: 70 IKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEVNYF 129
IKF +DVSN +++ +++ +D + + A + + +VN
Sbjct: 41 IKFITLDVSNRDEIDR----AVEKY-SIDAIFHLAGI-----LSAKGEKDPALAYKVNMN 90
Query: 130 GLLRI 134
G I
Sbjct: 91 GTYNI 95
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.25
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 174 DTLTEEELTQLMRQYVEDYQQGRHLEKGKYPGIQVHQSGVDVLINNAAVHLD-----YAG 228
D LT+E + +R++ E+ Q+ R E + A L+ +
Sbjct: 78 DRLTQEP--ESIRKWREE-QRKRLQELDA-----ASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 229 HLTKSEKDNQDKIEPALQERFLNDTLTEEEL 259
+ K++ +N+ + Q+ + ++
Sbjct: 130 QVEKNKINNRIADKAFYQQP-------DADI 153
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 31.4 bits (72), Expect = 0.35
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 51 IKK---IYENETIPTKRYYQEKIKFYRVD 76
IKK ++ ++P Y++ K K RV
Sbjct: 155 IKKRFNTFKETSMPVIEYFETKSKVVRVR 183
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 31.1 bits (71), Expect = 0.60
Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 38/139 (27%)
Query: 11 VTGASTGIGYNVVQDLVRFYDGTVYMTCINETAGLAAVDQIKKIYENETIPTKRYYQEKI 70
+ GA IG + Q L + Y + I+K+ +
Sbjct: 7 IIGACGQIGTELTQKLRKLYGTEN----VI-------ASDIRKLNTDVV--------NSG 47
Query: 71 KFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHLTKSEKLNRTMEVNYFG 130
F V+ + +Q+E+ + + H + + AA+ T + ++N
Sbjct: 48 PFEVVNALDFNQIEH----LVEVH-KITDIYLMAAL----LS-ATAEKNPAFAWDLNMNS 97
Query: 131 LLRIC---------HFLFP 140
L + +P
Sbjct: 98 LFHVLNLAKAKKIKKIFWP 116
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 30.6 bits (70), Expect = 0.64
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 51 IKK---IYENETIPTKRYYQEKIKFYRVD 76
I K Y +IP YY+ K + ++++
Sbjct: 150 IAKRLEAYYRASIPVIAYYETKTQLHKIN 178
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 30.8 bits (70), Expect = 0.64
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 74 RVDVSNESQVENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTMEVNYFGL 131
R S+ V+ + + Q G +D+L+++ A + + L T + + + +
Sbjct: 97 RYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSF 156
Query: 132 LRICHFLFPLLRQSARVIHVT 152
+ + P++ I +T
Sbjct: 157 VSLLSHFLPIMNPGGASISLT 177
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 30.2 bits (69), Expect = 0.70
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 51 IKK---IYENETIPTKRYYQEKIKFYRVD 76
IKK Y T P +Y+++ +V+
Sbjct: 147 IKKRLETYYKATEPVIAFYEKRGIVRKVN 175
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 30.2 bits (69), Expect = 0.79
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 51 IKK---IYENETIPTKRYYQEKIKFYRVD 76
IKK + +T +Y + K +
Sbjct: 145 IKKRFNTFNVQTKLVIDHYNKFDKVKIIP 173
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 30.2 bits (69), Expect = 0.79
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 51 IKK---IYENETIPTKRYYQEKIKFYRVD 76
++K Y T P Y+E K ++D
Sbjct: 148 LEKRIQTYLQSTKPIIDLYEEMGKVKKID 176
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 29.8 bits (68), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
++Y +T P YY+ + RVD
Sbjct: 145 EVYREKTEPLVGYYEARGVLKRVD 168
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 30.2 bits (68), Expect = 1.1
Identities = 10/87 (11%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 76 DVSNESQ--------VENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTME 125
+VS+ + + + + G +D+L+++ A + L T + +
Sbjct: 105 EVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVT 152
+ + + + PL+++ + ++
Sbjct: 165 SSSYSFVSLLQHFLPLMKEGGSALALS 191
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 30.1 bits (67), Expect = 1.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 7 SVAIVTGASTGIGYNVVQDLVR 28
SVA++ G + IG ++ + L
Sbjct: 2 SVALIVGVTGIIGNSLAEILPL 23
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.3
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 12/29 (41%)
Query: 345 ASIQPYQPE--PRGRLIWNNKEEQAWNAT 371
AS++ Y + P L A AT
Sbjct: 27 ASLKLYADDSAP--AL--------AIKAT 45
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 29.7 bits (67), Expect = 1.5
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 63 KRYYQEKIKFYRVDVSNESQVENFTQHIAQQHGGVDVLINNAAVH 107
+ + +++ + SNE Q++N Q AQ+H +D +
Sbjct: 2 ETFVGDQV--LEIVPSNEEQIKNLLQLEAQEHLQLDFWKSPTTPG 44
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 28.6 bits (64), Expect = 2.0
Identities = 9/83 (10%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 124 MEVNYFGLLRICHFLFPLLRQSARVIHVTSQCGHVSQIRNGTELQE-KFLNDTLTEEEL- 181
+ +R+ ++ P R + + +++ +++ + EE+
Sbjct: 58 ISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWV----SAEEIL 113
Query: 182 ------TQLMRQYVEDYQQGRHL 198
+ L+ + + YQ G+
Sbjct: 114 QASNLRSPLVAESIRCYQSGQRY 136
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 29.0 bits (65), Expect = 2.4
Identities = 9/87 (10%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 76 DVSNESQ--------VENFTQHIAQQHGGVDVLINNAAVHLDYAGHL--TKSEKLNRTME 125
D+ + + ++ + Q G +D+L+++ A + L T +
Sbjct: 92 DIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASS 151
Query: 126 VNYFGLLRICHFLFPLLRQSARVIHVT 152
+ + + + P++ + + ++
Sbjct: 152 NSAYSFVSLLQHFGPIMNEGGSAVTLS 178
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 28.3 bits (64), Expect = 3.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
++Y +T P YY++K +D
Sbjct: 163 EVYREQTAPLIEYYKKKGILRIID 186
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 28.3 bits (64), Expect = 3.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
++ +T P +Y EK V+
Sbjct: 173 EVNMKQTAPLLDFYDEKGYLVNVN 196
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 28.3 bits (64), Expect = 4.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
+ Y +T P YY ++ +D
Sbjct: 189 EAYHTQTTPLVEYYSKRGIHSAID 212
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.9 bits (63), Expect = 4.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
K YE++T P YYQ+K
Sbjct: 174 KAYEDQTKPVLEYYQKKGVLETFS 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.9 bits (63), Expect = 4.2
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
Y +T P +Y++ + VD
Sbjct: 178 AAYHAQTEPIVDFYKKTGIWAGVD 201
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase;
HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB:
3cgz_A 3cgy_A
Length = 152
Score = 27.6 bits (62), Expect = 4.3
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 16 TGIGYNVVQDLVRFYDGTV 34
G+G V +++ Y+G +
Sbjct: 108 QGVGLAVAREITEQYEGKI 126
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 27.9 bits (63), Expect = 4.6
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
+ +T P +Y +K +D
Sbjct: 173 DVNMKQTQPLLDFYSQKGVLKDID 196
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.0 bits (63), Expect = 5.0
Identities = 3/31 (9%), Positives = 14/31 (45%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVDVSNESQV 83
+ Y++ P Y+ + ++ + +++
Sbjct: 194 RQYKDVAKPVIELYKSRGVLHQFSGTETNKI 224
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.0 bits (63), Expect = 5.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
++++ET P YY+ K +D
Sbjct: 202 TVFKSETSPLISYYKNKNLLINLD 225
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.9 bits (63), Expect = 5.2
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 53 KIYENETIPTKRYYQEKIKFYRVD 76
++ +T P ++Y++ RV+
Sbjct: 178 DVFHKQTAPLVKFYEDLGILKRVN 201
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 27.9 bits (63), Expect = 6.7
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 12/38 (31%)
Query: 4 PGPSVAIV----TGASTGIGYNVVQDLVRFYD---GTV 34
G A+V +G ST V+ L+R YD GT+
Sbjct: 369 SGSVTALVGPSGSGKST-----VLSLLLRLYDPASGTI 401
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 27.5 bits (62), Expect = 8.0
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 11 VTGASTGIGY----NVVQDLVRFYDGTVYMTCINETAGLA----AVDQIKKIYENETIPT 62
VTG G GY V++ L Y V N G ++ +++++ T
Sbjct: 7 VTG---GAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-------T 56
Query: 63 KRYYQEKIKFYRVDVSNESQVEN-FTQH 89
R ++F +D+ ++ ++ F ++
Sbjct: 57 GR----SVEFEEMDILDQGALQRLFKKY 80
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 26.7 bits (59), Expect = 8.0
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 169 EKFLNDTLTEEELTQLMRQYVEDYQQGRHLEKGKY 203
E LN+ ++ E+L + +++ + G + ++
Sbjct: 2 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQF 36
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 26.3 bits (58), Expect = 8.3
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 169 EKFLNDTLTEEELTQLMRQYVEDYQQGRHLEKGKY 203
E LN+ ++ E+L + +++ + G + ++
Sbjct: 5 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQF 39
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 27.5 bits (60), Expect = 8.5
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 160 QIRNGTELQEKFLNDTLTEEELTQLMRQYVEDYQQGRHLEKGKYPGIQVHQSGVDVLINN 219
+++ + QE F+ + Q + Q R + +Q Q ++ +
Sbjct: 34 ELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETA---LQQKQVSLETWLQR 90
Query: 220 AAVHLDYAGHLTKSEKDNQDKIEPALQERFLNDTLTEEELTQLMHQ 265
A L + ++ Q L+D L + + Q +
Sbjct: 91 EAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAG 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.394
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,903,371
Number of extensions: 349730
Number of successful extensions: 2143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1904
Number of HSP's successfully gapped: 409
Length of query: 386
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 291
Effective length of database: 4,049,298
Effective search space: 1178345718
Effective search space used: 1178345718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)