BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8796
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/415 (47%), Positives = 268/415 (64%), Gaps = 39/415 (9%)
Query: 20 SILCVPI-NSYEGEVIGVAQIINK----TDGTSSFTDRDIE------------------- 55
S+LC PI N + +VIGV Q++NK T F D +
Sbjct: 453 SLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMY 512
Query: 56 -----------VALECLSYHATASGEDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDM 101
V LE LSYHA+A+ E+TR+L +PSAQ + F+F DF+LSD+
Sbjct: 513 EAVERAMAKQMVTLEVLSYHASAAEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDL 572
Query: 102 DTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAML 160
+T TIRMF + +LV+ F + ++VLCRW+LSVKKNYR V YHNWRHA N AQ MFA L
Sbjct: 573 ETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAAL 632
Query: 161 KTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQC 220
K GK++ ++DLEIL LL+A L HDLDHRG NN++ ++E PLA LY S MEHHHFDQC
Sbjct: 633 KAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQC 692
Query: 221 VMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSE 280
+MILNS GN I LS +Y+ +K+++ +IL+TDLA+Y K++ F +L+ +F+ +
Sbjct: 693 LMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDP 752
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
+K+L M+MTACD+ AI KPW +Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+
Sbjct: 753 HQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREK 812
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGL 395
K+++P MQVGFID ICL LY+ ++ PL DG +NR+ WQ LAE+ E L
Sbjct: 813 KNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALAEQQEKML 867
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGT-SSFTDRD 53
DPRFN E+D+ TGY T SILC+PI ++ EV+GVAQ INK G +FT++D
Sbjct: 251 DPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKD 302
>pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a
Length = 366
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 172/333 (51%), Positives = 238/333 (71%), Gaps = 4/333 (1%)
Query: 64 HATASGEDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQF 120
H +A+ E+TR+L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F
Sbjct: 20 HMSAAEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNF 79
Query: 121 HIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLV 179
+ ++VLCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+
Sbjct: 80 QMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLI 139
Query: 180 ACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHD 239
A L HDLDHRG NN++ ++E PLA LY S MEHHHFDQC+MILNS GN I LS +
Sbjct: 140 AALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEE 199
Query: 240 YRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAI 299
Y+ +K+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI
Sbjct: 200 YKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAI 259
Query: 300 AKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPL 359
KPW +Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL L
Sbjct: 260 TKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQL 319
Query: 360 YKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVE 392
Y+ ++ PL DG +NR+ WQ LAE+ E
Sbjct: 320 YEALTHVSEDCFPLLDGCRKNRQKWQALAEQQE 352
>pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx
Length = 326
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 169/325 (52%), Positives = 233/325 (71%), Gaps = 4/325 (1%)
Query: 70 EDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDV 126
E+TR+L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++V
Sbjct: 1 EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEV 60
Query: 127 LCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
LCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HD
Sbjct: 61 LCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHD 120
Query: 186 LDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMK 245
LDHRG NN++ ++E PLA LY S MEHHHFDQC+MILNS GN I LS +Y+ +K
Sbjct: 121 LDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLK 180
Query: 246 LVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEV 305
+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +
Sbjct: 181 IIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI 240
Query: 306 QHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSD 365
Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 241 QQRLAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTH 300
Query: 366 TFPWIQPLYDGTYENRKHWQDLAEK 390
PL DG +NR+ WQ LAE+
Sbjct: 301 VSEDCFPLLDGCRKNRQKWQALAEQ 325
>pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
pdb|3B2R|B Chain B, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
Length = 330
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 169/325 (52%), Positives = 233/325 (71%), Gaps = 4/325 (1%)
Query: 70 EDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDV 126
E+TR+L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++V
Sbjct: 5 EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEV 64
Query: 127 LCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
LCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HD
Sbjct: 65 LCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHD 124
Query: 186 LDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMK 245
LDHRG NN++ ++E PLA LY S MEHHHFDQC+MILNS GN I LS +Y+ +K
Sbjct: 125 LDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLK 184
Query: 246 LVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEV 305
+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +
Sbjct: 185 IIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI 244
Query: 306 QHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSD 365
Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 245 QQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTH 304
Query: 366 TFPWIQPLYDGTYENRKHWQDLAEK 390
PL DG +NR+ WQ LAE+
Sbjct: 305 VSEDCFPLLDGCRKNRQKWQALAEQ 329
>pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded
Pde5
pdb|2H42|A Chain A, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|B Chain B, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|C Chain C, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H44|A Chain A, Crystal Structure Of Pde5a1 In Complex With Icarisid Ii
Length = 326
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 169/325 (52%), Positives = 233/325 (71%), Gaps = 4/325 (1%)
Query: 70 EDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDV 126
E+TR+L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++V
Sbjct: 1 EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEV 60
Query: 127 LCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
LCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HD
Sbjct: 61 LCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHD 120
Query: 186 LDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMK 245
LDHRG NN++ ++E PLA LY S MEHHHFDQC+MILNS GN I LS +Y+ +K
Sbjct: 121 LDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLK 180
Query: 246 LVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEV 305
+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +
Sbjct: 181 IIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI 240
Query: 306 QHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSD 365
Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 241 QQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTH 300
Query: 366 TFPWIQPLYDGTYENRKHWQDLAEK 390
PL DG +NR+ WQ LAE+
Sbjct: 301 VSEDCFPLLDGCRKNRQKWQALAEQ 325
>pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SHZ|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|B Chain B, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSF|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
Length = 347
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/325 (52%), Positives = 233/325 (71%), Gaps = 4/325 (1%)
Query: 70 EDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDV 126
E+TR+L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++V
Sbjct: 22 EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEV 81
Query: 127 LCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
LCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HD
Sbjct: 82 LCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHD 141
Query: 186 LDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMK 245
LDHRG NN++ ++E PLA LY S MEHHHFDQC+MILNS GN I LS +Y+ +K
Sbjct: 142 LDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLK 201
Query: 246 LVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEV 305
+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +
Sbjct: 202 IIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI 261
Query: 306 QHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSD 365
Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 262 QQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTH 321
Query: 366 TFPWIQPLYDGTYENRKHWQDLAEK 390
PL DG +NR+ WQ LAE+
Sbjct: 322 VSEDCFPLLDGCRKNRQKWQALAEQ 346
>pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Sildenafil(Viagra)
pdb|1UDU|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UDU|B Chain B, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UHO|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Vardenafil(Levitra)
Length = 324
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 166/321 (51%), Positives = 230/321 (71%), Gaps = 1/321 (0%)
Query: 71 DTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW 130
+ + L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++VLCRW
Sbjct: 3 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRW 62
Query: 131 VLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189
+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HDLDHR
Sbjct: 63 ILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHR 122
Query: 190 GTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVEN 249
G NN++ ++E PLA LY S MEHHHFDQC+MILNS GN I LS +Y+ +K+++
Sbjct: 123 GVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQ 182
Query: 250 SILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKM 309
+IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +Q ++
Sbjct: 183 AILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRI 242
Query: 310 AKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPW 369
A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 243 AELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSED 302
Query: 370 IQPLYDGTYENRKHWQDLAEK 390
PL DG +NR+ WQ LAE+
Sbjct: 303 CFPLLDGCRKNRQKWQALAEQ 323
>pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|B Chain B, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|C Chain C, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|D Chain D, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWR|A Chain A, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87.
pdb|3JWR|B Chain B, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87
Length = 330
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 168/325 (51%), Positives = 232/325 (71%), Gaps = 4/325 (1%)
Query: 70 EDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDV 126
E+TR+L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++V
Sbjct: 5 EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEV 64
Query: 127 LCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
LCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HD
Sbjct: 65 LCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHD 124
Query: 186 LDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMK 245
LDHRG NN++ ++E PLA LY S MEHHHFDQC+MILNS GN I LS +Y+ +K
Sbjct: 125 LDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLK 184
Query: 246 LVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEV 305
+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +
Sbjct: 185 IIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI 244
Query: 306 QHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSD 365
Q ++A+LVA EF++QGDLE+ L QP+ MMDR ++DELP++QVGFID +C LY+ ++
Sbjct: 245 QQRIAELVATEFWEQGDLERTVLQQQPIPMMDRNKRDELPKLQVGFIDFVCTQLYEALTH 304
Query: 366 TFPWIQPLYDGTYENRKHWQDLAEK 390
PL DG +NR+ WQ LAE+
Sbjct: 305 VSEDCFPLLDGCRKNRQKWQALAEQ 329
>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Tadalafil
pdb|1XP0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Vardenafil
Length = 364
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 165/331 (49%), Positives = 229/331 (69%), Gaps = 2/331 (0%)
Query: 64 HATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIP 123
H + + L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F +
Sbjct: 20 HMEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMK 79
Query: 124 YDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACL 182
++VLCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L
Sbjct: 80 HEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAAL 139
Query: 183 CHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYR 241
HDLDH G +N F T S LA++Y S +EHHHFDQC+MILNS GN I LS +Y+
Sbjct: 140 SHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYK 199
Query: 242 IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301
+K+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI K
Sbjct: 200 TTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITK 259
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
PW +Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+
Sbjct: 260 PWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYE 319
Query: 362 VMSDTFPWIQPLYDGTYENRKHWQDLAEKVE 392
++ PL DG +NR+ WQ LAE+ E
Sbjct: 320 ALTHVSEDCFPLLDGCRKNRQKWQALAEQQE 350
>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo
Pyrimidinones- A Flipped Binding Mode In Pde5
pdb|3TGE|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor1
pdb|3TGG|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor2
Length = 326
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 166/325 (51%), Positives = 229/325 (70%), Gaps = 5/325 (1%)
Query: 70 EDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDV 126
E+TR+L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++V
Sbjct: 2 EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEV 61
Query: 127 LCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
LCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HD
Sbjct: 62 LCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHD 121
Query: 186 LDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVM 244
LDH G +N F T S LA++Y S +EHHHFDQC+MILNS GN I LS +Y+ +
Sbjct: 122 LDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTL 181
Query: 245 KLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWE 304
K+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW
Sbjct: 182 KIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHEKELFLAMLMTACDLSAITKPWP 241
Query: 305 VQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMS 364
+Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 242 IQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALT 301
Query: 365 DTFPWIQPLYDGTYENRKHWQDLAE 389
PL DG +NR+ WQ LAE
Sbjct: 302 HVSEDCFPLLDGCRKNRQKWQALAE 326
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Sildenafil
Length = 347
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 227/328 (69%), Gaps = 2/328 (0%)
Query: 64 HATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIP 123
H + + L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F +
Sbjct: 20 HMEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMK 79
Query: 124 YDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACL 182
++VLCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L
Sbjct: 80 HEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAAL 139
Query: 183 CHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYR 241
HDLDH G +N F T S LA++Y S +EHHHFDQC+MILNS GN I LS +Y+
Sbjct: 140 SHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYK 199
Query: 242 IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301
+K+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI K
Sbjct: 200 TTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITK 259
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
PW +Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+
Sbjct: 260 PWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYE 319
Query: 362 VMSDTFPWIQPLYDGTYENRKHWQDLAE 389
++ PL DG +NR+ WQ LAE
Sbjct: 320 ALTHVSEDCFPLLDGCRKNRQKWQALAE 347
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
Inhibitors: Evaluation Of Modifications To The Central
Ring System.
pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
Pyrido[3,2b]pryaziones As Potent And Selective Pde5
Inhibitors
Length = 324
Score = 357 bits (917), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 163/321 (50%), Positives = 226/321 (70%), Gaps = 2/321 (0%)
Query: 71 DTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW 130
+ + L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++VLCRW
Sbjct: 4 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRW 63
Query: 131 VLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189
+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HDLDH
Sbjct: 64 ILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHP 123
Query: 190 GTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVE 248
G +N F T S LA++Y S +EHHHFDQC+MILNS GN I LS +Y+ +K+++
Sbjct: 124 GVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIK 183
Query: 249 NSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHK 308
+IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +Q +
Sbjct: 184 QAILATDLALYIKRRGEFFELIRKNQFNLEDPHEKELFLAMLMTACDLSAITKPWPIQQR 243
Query: 309 MAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFP 368
+A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 244 IAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSE 303
Query: 369 WIQPLYDGTYENRKHWQDLAE 389
PL DG +NR+ WQ LAE
Sbjct: 304 DCFPLLDGCRKNRQKWQALAE 324
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/422 (36%), Positives = 236/422 (55%), Gaps = 38/422 (9%)
Query: 4 PRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGT--SSFTDRDIEVAL--- 58
P F +D TG+ T +ILC PI + EVIGVA+++NK +G S F D D+ A
Sbjct: 272 PLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKF-DEDLATAFSIY 330
Query: 59 -------------------------ECLSYHATASGEDTRKLIKDTI-PSAQV-YNLYSF 91
E + YH S ++ KL+ D I P A + N SF
Sbjct: 331 CGISIAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFASF 390
Query: 92 TFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALN 151
T+ L + DT A + M + + + + I L R+ L VKK YR YHNW HA +
Sbjct: 391 TYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAFS 450
Query: 152 VAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-- 209
V+ + + K ++ ++ D+EI L ++C+CHDLDHRGTNN+FQ ++S LA LY++
Sbjct: 451 VSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEG 510
Query: 210 STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQL 269
S ME HHF Q + ILN+ G NIF S DY+ ++ L+ + IL+TDLA + + ++
Sbjct: 511 SVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQKM 570
Query: 270 VENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLN 329
E G +D +++ +LL ++MT+CD+ K W+ K+A+L+ EFF QGDLEK +
Sbjct: 571 AEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEK-AMG 628
Query: 330 TQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAE 389
+P+ MMDRE K +P++Q+ F++ I +P+YK++ D FP LY+ NR+HW ++
Sbjct: 629 NRPMEMMDRE-KAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASNREHWTKVSH 687
Query: 390 KV 391
V
Sbjct: 688 LV 689
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 255 bits (651), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 201/340 (59%), Gaps = 7/340 (2%)
Query: 58 LECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLV 117
+E LSYH+ + E+ + L++ T+P + F FD+ + I +++
Sbjct: 1 MEKLSYHSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYMVHRSC 57
Query: 118 KQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGL 177
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GL
Sbjct: 58 GTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGL 115
Query: 178 LVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSP 237
L+ACLCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS
Sbjct: 116 LIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSS 175
Query: 238 HDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVG 297
+Y V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+
Sbjct: 176 SEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLC 235
Query: 298 AIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICL 357
++ K W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +
Sbjct: 236 SVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAI 294
Query: 358 PLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTW 397
P Y ++ P +PL +N W+ + E TW
Sbjct: 295 PCYTTLTQILPPTEPLLKACRDNLSQWEKVIRGEETA-TW 333
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 204/352 (57%), Gaps = 10/352 (2%)
Query: 57 ALECLSYHATAS---GEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLE 113
+E LSYH+ S E+ + L++ T+P + F FD+ + I +++
Sbjct: 1 GMEKLSYHSHMSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYMV 57
Query: 114 CDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLE 173
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE
Sbjct: 58 HRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLE 115
Query: 174 ILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQ 233
GLL+ACLCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF
Sbjct: 116 RKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFS 175
Query: 234 ALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTA 293
LS +Y V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTA
Sbjct: 176 TLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTA 235
Query: 294 CDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFID 353
CD+ ++ K W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF +
Sbjct: 236 CDLCSVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYN 294
Query: 354 VICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEK 405
+ +P Y ++ P +PL +N W+ + E TWI + +
Sbjct: 295 AVAIPCYTTLTQILPPTEPLLKACRDNLSQWEKVIRGEETA-TWISSPSVAQ 345
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 200/344 (58%), Gaps = 7/344 (2%)
Query: 62 SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFH 121
S+ + + E+ + L++ T+P + F FD+ + I +++
Sbjct: 2 SHMSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYMVHRSCGTSC 58
Query: 122 IPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVAC 181
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+AC
Sbjct: 59 FELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIAC 116
Query: 182 LCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYR 241
LCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y
Sbjct: 117 LCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 176
Query: 242 IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301
V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K
Sbjct: 177 QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTK 236
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y
Sbjct: 237 LWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYT 295
Query: 362 VMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEK 405
++ P +PL +N W+ + E TWI + +
Sbjct: 296 TLTQILPPTEPLLKACRDNLSQWEKVIRGEETA-TWISSPSVAQ 338
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 200/340 (58%), Gaps = 9/340 (2%)
Query: 56 VALECLSYHATAS---GEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFL 112
+ +E LSYH+ S E+ + L++ T+P + F FD+ + I +++
Sbjct: 4 MGMEKLSYHSHMSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYM 60
Query: 113 ECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDL 172
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DL
Sbjct: 61 VHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDL 118
Query: 173 EILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIF 232
E GLL+ACLCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF
Sbjct: 119 ERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIF 178
Query: 233 QALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMT 292
LS +Y V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMT
Sbjct: 179 STLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMT 238
Query: 293 ACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFI 352
ACD+ ++ K W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF
Sbjct: 239 ACDLCSVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFY 297
Query: 353 DVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVE 392
+ + +P Y ++ P +PL +N W+ + E
Sbjct: 298 NAVAIPCYTTLTQILPPTEPLLKACRDNLSQWEKVIRGEE 337
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 176/279 (63%), Gaps = 4/279 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 63 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDL 120
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 121 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 180
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 181 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVT 240
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y ++
Sbjct: 241 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQI 299
Query: 367 FPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEK 405
P +PL +N W+ + E TWI + +
Sbjct: 300 LPPTEPLLKACRDNLSQWEKVIRGEETA-TWISSPSVAQ 337
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 199/339 (58%), Gaps = 9/339 (2%)
Query: 57 ALECLSYHATAS---GEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLE 113
+E LSYH+ S E+ + L++ T+P + F FD+ + I +++
Sbjct: 1 GMEKLSYHSHMSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYMV 57
Query: 114 CDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLE 173
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE
Sbjct: 58 HRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLE 115
Query: 174 ILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQ 233
GLL+ACLCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF
Sbjct: 116 RKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFS 175
Query: 234 ALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTA 293
LS +Y V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTA
Sbjct: 176 TLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTA 235
Query: 294 CDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFID 353
CD+ ++ K W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF +
Sbjct: 236 CDLCSVTKLWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYN 294
Query: 354 VICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVE 392
+ +P Y ++ P +PL +N W+ + E
Sbjct: 295 AVAIPCYTTLTQILPPTEPLLKACRDNLSQWEKVIRGEE 333
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 198/338 (58%), Gaps = 7/338 (2%)
Query: 62 SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFH 121
S+ + + E+ + L++ T+P + F FD+ + I +++
Sbjct: 1 SHMSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYMVHRSCGTSC 57
Query: 122 IPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVAC 181
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+AC
Sbjct: 58 FELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIAC 115
Query: 182 LCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYR 241
LCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y
Sbjct: 116 LCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 175
Query: 242 IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301
V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K
Sbjct: 176 QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTK 235
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y
Sbjct: 236 LWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYT 294
Query: 362 VMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWID 399
++ P +PL +N W+ + E TWI
Sbjct: 295 TLTQILPPTEPLLKACRDNLSQWEKVIRGEETA-TWIS 331
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 176/279 (63%), Gaps = 4/279 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 57 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDL 114
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 115 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 174
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 175 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVT 234
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y ++
Sbjct: 235 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQI 293
Query: 367 FPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEK 405
P +PL +N W+ + E TWI + +
Sbjct: 294 LPPTEPLLKACRDNLSQWEKVIRGEETA-TWISSPSVAQ 331
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 248 bits (634), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 176/279 (63%), Gaps = 4/279 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 62 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDL 119
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 120 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 179
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 180 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVT 239
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y ++
Sbjct: 240 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQI 298
Query: 367 FPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEK 405
P +PL +N W+ + E TWI + +
Sbjct: 299 LPPTEPLLKACRDNLSQWEKVIRGEETA-TWISSPSVAQ 336
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 176/283 (62%), Gaps = 4/283 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 94 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNN--GLFTDLERKGLLIACLCHDL 151
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 152 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 211
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 212 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVT 271
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR+++DE+PQ Q+GF + + +P Y ++
Sbjct: 272 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQI 330
Query: 367 FPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEE 409
P +PL +N W+ + E + WI K E
Sbjct: 331 LPPTEPLLKACRDNLNQWEKVIRGEETAM-WISGPATSKSTSE 372
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 176/283 (62%), Gaps = 4/283 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 76 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNN--GLFTDLERKGLLIACLCHDL 133
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 134 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 193
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 194 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVT 253
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR+++DE+PQ Q+GF + + +P Y ++
Sbjct: 254 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQI 312
Query: 367 FPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEE 409
P +PL +N W+ + E + WI K E
Sbjct: 313 LPPTEPLLKACRDNLNQWEKVIRGEETAM-WISGPATSKSTSE 354
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 176/283 (62%), Gaps = 4/283 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 90 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNN--GLFTDLERKGLLIACLCHDL 147
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 148 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 207
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 208 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVT 267
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR+++DE+PQ Q+GF + + +P Y ++
Sbjct: 268 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQI 326
Query: 367 FPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEE 409
P +PL +N W+ + E + WI K E
Sbjct: 327 LPPTEPLLKACRDNLNQWEKVIRGEETAM-WISGPATSKSTSE 368
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 198/338 (58%), Gaps = 7/338 (2%)
Query: 62 SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFH 121
S+ + + E+ + L++ T+P + F FD+ + I +++
Sbjct: 1 SHMSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYMVHRSCGTSC 57
Query: 122 IPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVAC 181
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+AC
Sbjct: 58 FELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIAC 115
Query: 182 LCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYR 241
LCH+LDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y
Sbjct: 116 LCHNLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 175
Query: 242 IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301
V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K
Sbjct: 176 QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTK 235
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y
Sbjct: 236 LWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYT 294
Query: 362 VMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWID 399
++ P +PL +N W+ + E TWI
Sbjct: 295 TLTQILPPTEPLLKACRDNLSQWEKVIRGEETA-TWIS 331
>pdb|1Z1L|A Chain A, The Crystal Structure Of The Phosphodiesterase 2a
Catalytic Domain
Length = 345
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 199/328 (60%), Gaps = 7/328 (2%)
Query: 67 ASGEDTRKLIKDTI-PSAQV-YNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPY 124
AS ++ KL+ D I P A + N SFT+ L + DT A + M + + + + I
Sbjct: 3 ASDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDC 62
Query: 125 DVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCH 184
L R+ L VKK YR YHNW HA +V+ + + K ++ ++ D+EI L ++C+CH
Sbjct: 63 PTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCH 122
Query: 185 DLDHRGTNNAFQTKTESPLAILYTT--STMEHHHFDQCVMILNSDGNNIFQALSPHDYRI 242
DLDHRGTNN+FQ ++S LA LY++ S ME HHF Q + ILN+ G NIF S DY+
Sbjct: 123 DLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQR 182
Query: 243 VMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKP 302
++ L+ + IL+TDLA + + ++ E G +D +++ +LL ++MT+CD+ K
Sbjct: 183 MLDLMRDIILATDLAHHLRIFKDLQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKG 241
Query: 303 WEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKV 362
W+ K+A+L+ EFF QGDLEK + +P+ MMDRE K +P++Q+ F++ I +P+YK+
Sbjct: 242 WKTTRKIAELIYKEFFSQGDLEK-AMGNRPMEMMDRE-KAYIPELQISFMEHIAMPIYKL 299
Query: 363 MSDTFPWIQPLYDGTYENRKHWQDLAEK 390
+ D FP LY+ NR+HW ++ K
Sbjct: 300 LQDLFPKAAELYERVASNREHWTKVSHK 327
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 197/338 (58%), Gaps = 7/338 (2%)
Query: 62 SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFH 121
S+ + + E+ + L++ T+P + F FD+ + I +++
Sbjct: 1 SHMSICTSEEWQGLMQFTLPVRLCKEIELF---HFDIGPFENMWPGIFVYMVHRSCGTSC 57
Query: 122 IPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVAC 181
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+AC
Sbjct: 58 FELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIAC 115
Query: 182 LCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYR 241
LCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y
Sbjct: 116 LCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 175
Query: 242 IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301
V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTAC + ++ K
Sbjct: 176 QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACALCSVTK 235
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
W V A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y
Sbjct: 236 LWPVTKLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYT 294
Query: 362 VMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWID 399
++ P +PL +N W+ + E TWI
Sbjct: 295 TLTQILPPTEPLLKACRDNLSQWEKVIRGEETA-TWIS 331
>pdb|3ITM|A Chain A, Catalytic Domain Of Hpde2a
pdb|3ITM|B Chain B, Catalytic Domain Of Hpde2a
pdb|3ITM|C Chain C, Catalytic Domain Of Hpde2a
pdb|3ITM|D Chain D, Catalytic Domain Of Hpde2a
pdb|3ITU|A Chain A, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|B Chain B, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|C Chain C, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|D Chain D, Hpde2a Catalytic Domain Complexed With Ibmx
Length = 345
Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 199/330 (60%), Gaps = 7/330 (2%)
Query: 65 ATASGEDTRKLIKDTI-PSAQV-YNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHI 122
+A ++ KL+ D I P A + N SFT+ L + DT A + M + + + + I
Sbjct: 1 GSAMDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKI 60
Query: 123 PYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACL 182
L R+ L VKK YR YHNW HA +V+ + + K ++ ++ D+EI L ++C+
Sbjct: 61 DCPTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCM 120
Query: 183 CHDLDHRGTNNAFQTKTESPLAILYTT--STMEHHHFDQCVMILNSDGNNIFQALSPHDY 240
CHDLDHRGTNN+FQ ++S LA LY++ S ME HHF Q + ILN+ G NIF S DY
Sbjct: 121 CHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDY 180
Query: 241 RIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIA 300
+ ++ L+ + IL+TDLA + + ++ E G +D +++ +LL ++MT+CD+
Sbjct: 181 QRMLDLMRDIILATDLAHHLRIFKDLQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQT 239
Query: 301 KPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLY 360
K W+ K+A+L+ EFF QGDLEK + +P+ MMDRE K +P++Q+ F++ I +P+Y
Sbjct: 240 KGWKTTRKIAELIYKEFFSQGDLEK-AMGNRPMEMMDRE-KAYIPELQISFMEHIAMPIY 297
Query: 361 KVMSDTFPWIQPLYDGTYENRKHWQDLAEK 390
K++ D FP LY+ NR+HW ++ K
Sbjct: 298 KLLQDLFPKAAELYERVASNREHWTKVSHK 327
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 244 bits (624), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 170/261 (65%), Gaps = 3/261 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 57 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDL 114
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 115 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 174
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 175 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVT 234
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR++KDE+PQ Q+GF + + +P Y ++
Sbjct: 235 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQI 293
Query: 367 FPWIQPLYDGTYENRKHWQDL 387
P +PL +N W+ +
Sbjct: 294 LPPTEPLLKACRDNLSQWEKV 314
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 171/266 (64%), Gaps = 3/266 (1%)
Query: 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDL 186
LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACLCHDL
Sbjct: 46 LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNN--GLFTDLERKGLLIACLCHDL 103
Query: 187 DHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKL 246
DHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y V+++
Sbjct: 104 DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEI 163
Query: 247 VENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306
+ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K W V
Sbjct: 164 IRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVT 223
Query: 307 HKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366
A + EF+ +GD E +L QP+ MMDR+++DE+PQ Q+GF + + +P Y ++
Sbjct: 224 KLTANDIYAEFWAEGD-EMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQI 282
Query: 367 FPWIQPLYDGTYENRKHWQDLAEKVE 392
P +PL +N W+ + E
Sbjct: 283 LPPTEPLLKACRDNLNQWEKVIRGEE 308
>pdb|2R8Q|A Chain A, Structure Of Lmjpdeb1 In Complex With Ibmx
pdb|2R8Q|B Chain B, Structure Of Lmjpdeb1 In Complex With Ibmx
Length = 359
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 168/325 (51%), Gaps = 16/325 (4%)
Query: 77 KDTIPSAQVYNLYSFTFIDFDLSD--------MDTCRATIRMFL-ECDLVKQFHIPYDVL 127
++ + S Y FT F+L + MD + L L ++F L
Sbjct: 24 REAVMSIDFGGAYDFTSPGFNLFEVREKYSEPMDAAAGVVYNLLWNSGLPEKFGCREQTL 83
Query: 128 CRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLD 187
++L ++ YR V YHN+ H ++V QT+ L TGK +++LE LLV L HDLD
Sbjct: 84 LNFILQCRRRYRRVPYHNFYHVVDVCQTLHTYLYTGKASELLTELECYVLLVTALVHDLD 143
Query: 188 HRGTNNAFQTKTESPLAILYTT----STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIV 243
H G NN+F KT+SPL IL + S +E HH + IL+ ++F+ LS D
Sbjct: 144 HMGVNNSFYLKTDSPLGILSSASGNNSVLEVHHCSLAIEILSDPAADVFEGLSGQDVAYA 203
Query: 244 MKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPW 303
+ + + +L+TD+A + +RF +L +G F+ ++ ++L+ ++ A DV + KP+
Sbjct: 204 YRALIDCVLATDMAKHADALSRFTELATSG-FEKDNDTHRRLVMETLIKAGDVSNVTKPF 262
Query: 304 EVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK-V 362
E A V +EF+ QGD+EK + + + M DR + +EL + Q+GFID + ++ +
Sbjct: 263 ETSRMWAMAVTEEFYRQGDMEK-EKGVEVLPMFDRSKNNELARGQIGFIDFVAGKFFRDI 321
Query: 363 MSDTFPWIQPLYDGTYENRKHWQDL 387
+ + F +Q D NR WQ++
Sbjct: 322 VGNLFHGMQWCVDTVNSNRAKWQEI 346
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 14/317 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 169
M+ + LV+ F I L RW+ V NYR +HN+RH VAQ M++M+ ++
Sbjct: 218 MYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKF 277
Query: 170 SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDG 228
S +IL L+ A +CHDLDH G NN +Q + LA+ Y S +E+HH IL
Sbjct: 278 SQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPE 337
Query: 229 NNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCG 288
NIF + P ++ + + + IL+TD+A + + + F + +EN FD+ +EE LL
Sbjct: 338 CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFKEKMEN--FDYSNEEHMTLLKM 395
Query: 289 MMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVA-MMDRERKDELPQM 347
+++ CD+ +P EV + +E+F Q D EK + PVA MDR++ +
Sbjct: 396 ILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE--GLPVAPFMDRDKVTK-ATA 452
Query: 348 QVGFIDVICLPLYKVMSDTFPWI-----QPLYDG--TYENRKHWQDLAEKVEMGLTWIDH 400
++GFI + +P+++ ++ FP + QPL++ YE K D ++++ +
Sbjct: 453 EIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQKKTDSLTS 512
Query: 401 DKIEKPIEEFADAGGTK 417
EK E D ++
Sbjct: 513 GATEKSRERSRDVKNSE 529
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 155/292 (53%), Gaps = 14/292 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 169
M+ + LV+ F I L RW+ V NYR +HN+RH VAQ M++M+ ++
Sbjct: 38 MYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKF 97
Query: 170 SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDG 228
S +IL L+ A +CHDLDH G NN +Q + LA+ Y S +E+HH IL
Sbjct: 98 SQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPE 157
Query: 229 NNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCG 288
NIF + P ++ + + + IL+TD+A + + + F + +EN FD+ +EE LL
Sbjct: 158 CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFKEKMEN--FDYSNEEHMTLLKM 215
Query: 289 MMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVA-MMDRERKDELPQM 347
+++ CD+ +P EV + +E+F Q D EK + PVA MDR++ +
Sbjct: 216 ILIKCCDISNAVRPMEVAEPWVDCLLEEYFMQSDREKSE--GLPVAPFMDRDKVTK-ATA 272
Query: 348 QVGFIDVICLPLYKVMSDTFPWI-----QPLYDG--TYENRKHWQDLAEKVE 392
Q+GFI + +P+++ ++ FP + QPL++ YE K D ++++
Sbjct: 273 QIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQ 324
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 155/292 (53%), Gaps = 14/292 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 169
M+ + LV+ F I L RW+ V NYR +HN+RH VAQ M++M+ ++
Sbjct: 45 MYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKF 104
Query: 170 SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDG 228
S +IL L+ A +CHDLDH G NN +Q + LA+ Y S +E+HH IL
Sbjct: 105 SQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPE 164
Query: 229 NNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCG 288
NIF + P ++ + + + IL+TD+A + + + F + +EN FD+ +EE LL
Sbjct: 165 CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFKEKMEN--FDYSNEEHMTLLKM 222
Query: 289 MMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVA-MMDRERKDELPQM 347
+++ CD+ +P EV + +E+F Q D EK + PVA MDR++ +
Sbjct: 223 ILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE--GLPVAPFMDRDKVTK-ATA 279
Query: 348 QVGFIDVICLPLYKVMSDTFPWI-----QPLYDG--TYENRKHWQDLAEKVE 392
Q+GFI + +P+++ ++ FP + QPL++ YE K D ++++
Sbjct: 280 QIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQ 331
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 155/292 (53%), Gaps = 14/292 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 169
M+ + LV+ F I L RW+ V NYR +HN+RH VAQ M++M+ ++
Sbjct: 41 MYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKF 100
Query: 170 SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDG 228
S +IL L+ A +CHDLDH G NN +Q + LA+ Y S +E+HH IL
Sbjct: 101 SQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPE 160
Query: 229 NNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCG 288
NIF + P ++ + + + IL+TD+A + + + F + +EN FD+ +EE LL
Sbjct: 161 CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFKEKMEN--FDYSNEEHMTLLKM 218
Query: 289 MMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVA-MMDRERKDELPQM 347
+++ CD+ +P EV + +E+F Q D EK + PVA MDR++ +
Sbjct: 219 ILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE--GLPVAPFMDRDKVTK-ATA 275
Query: 348 QVGFIDVICLPLYKVMSDTFPWI-----QPLYDG--TYENRKHWQDLAEKVE 392
Q+GFI + +P+++ ++ FP + QPL++ YE K D ++++
Sbjct: 276 QIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQ 327
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 155/292 (53%), Gaps = 14/292 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 169
M+ + LV+ F I L RW+ V NYR +HN+RH VAQ M++M+ ++
Sbjct: 38 MYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKF 97
Query: 170 SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDG 228
S +IL L+ A +CHDLDH G NN +Q + LA+ Y S +E+HH IL
Sbjct: 98 SQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPE 157
Query: 229 NNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCG 288
NIF + P ++ + + + IL+TD+A + + + F + +EN FD+ +EE LL
Sbjct: 158 CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFKEKMEN--FDYSNEEHMTLLKM 215
Query: 289 MMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVA-MMDRERKDELPQM 347
+++ CD+ +P EV + +E+F Q D EK + PVA MDR++ +
Sbjct: 216 ILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE--GLPVAPFMDRDKVTK-ATA 272
Query: 348 QVGFIDVICLPLYKVMSDTFPWI-----QPLYDG--TYENRKHWQDLAEKVE 392
Q+GFI + +P+++ ++ FP + QPL++ YE K D ++++
Sbjct: 273 QIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQ 324
>pdb|2QYM|A Chain A, Crystal Structure Of Unliganded Pde4c2
Length = 358
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 157/327 (48%), Gaps = 27/327 (8%)
Query: 70 EDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCR 129
EDT K D A++ T I F + F E DL+K F IP D L
Sbjct: 20 EDTNKWGLDVFKVAELSGNRPLTAIIFSI------------FQERDLLKTFQIPADTLAT 67
Query: 130 WVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188
++L ++ +Y V YHN HA +VAQ+ +L T +E +DLEIL L A HD+DH
Sbjct: 68 YLLMLEGHYHANVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEILAALFASAIHDVDH 127
Query: 189 RGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLV 247
G +N F T S LA++Y S +E+HH +L ++ +IFQ LS + ++V
Sbjct: 128 PGVSNQFLINTNSELALMYNDASVLENHHLAVGFKLLQAENCDIFQNLSAKQRLSLRRMV 187
Query: 248 ENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------EEKKQLLCGMMMTACDVGAIA 300
+ +L+TD++ + +VE + ++ Q+L ++ A D+
Sbjct: 188 IDMVLATDMSKHMNLLADLKTMVETKKVTSLGVLLLDNYSDRIQVLQNLVHCA-DLSNPT 246
Query: 301 KPWEVQHKMAKLVADEFFDQGDLEKLQ-LNTQPVAMMDRERKDELPQMQVGFIDVICLPL 359
KP + + + EFF QGD E+ L+ P M D+ + + QVGFID I PL
Sbjct: 247 KPLPLYRQWTDRIMAEFFQQGDRERESGLDISP--MCDKHTA-SVEKSQVGFIDYIAHPL 303
Query: 360 YKVMSD-TFPWIQPLYDGTYENRKHWQ 385
++ +D P Q L D +NR+ +Q
Sbjct: 304 WETWADLVHPDAQDLLDTLEDNREWYQ 330
>pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
Length = 421
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 127 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 186
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 187 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 246
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 247 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 306
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 307 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 364
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 365 AS-VEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 409
>pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4K|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4L|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G58|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
Length = 381
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 49 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 108
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 109 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 168
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 169 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 228
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 229 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 286
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 287 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 331
>pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
Length = 377
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 49 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 108
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 109 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 168
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 169 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 228
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 229 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 286
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 287 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 331
>pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TB7|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TBB|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
pdb|1TBB|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
Length = 332
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 44 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 103
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 104 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 163
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 164 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 223
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 224 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 281
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 282 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 326
>pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
Length = 359
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 47 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 106
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 107 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 166
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 167 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 226
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 227 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 284
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 285 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 329
>pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|B Chain B, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|C Chain C, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|D Chain D, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1OYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|C Chain C, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|D Chain D, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1PTW|A Chain A, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|B Chain B, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|C Chain C, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|D Chain D, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|3V9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
Length = 360
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 47 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 106
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 107 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 166
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 167 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 226
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 227 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 284
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 285 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 329
>pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx
pdb|1ZKN|B Chain B, Structure Of Pde4d2-Ibmx
pdb|1ZKN|C Chain C, Structure Of Pde4d2-Ibmx
pdb|1ZKN|D Chain D, Structure Of Pde4d2-Ibmx
Length = 334
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 47 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 106
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 107 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 166
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 167 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 226
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 227 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 284
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 285 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 329
>pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|B Chain B, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|C Chain C, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|D Chain D, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM5|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|C Chain C, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|D Chain D, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|3SL3|A Chain A, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|B Chain B, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|C Chain C, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|D Chain D, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL6|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
Length = 361
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 47 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 106
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 107 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 166
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 167 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 226
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 227 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 284
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 285 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 329
>pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|B Chain B, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|C Chain C, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|D Chain D, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|E Chain E, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|F Chain F, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|G Chain G, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|H Chain H, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|I Chain I, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|J Chain J, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|K Chain K, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|L Chain L, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
Length = 328
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 40 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 99
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 100 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 159
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 160 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 219
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 220 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFPQGDRER-ERGMEISPMCDKHN 277
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 278 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 322
>pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
pdb|2QYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
Length = 328
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 40 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 99
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 100 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 159
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 160 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 219
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 220 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 277
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 278 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 322
>pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XOM|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XON|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XON|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XOQ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOQ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOR|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1XOR|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1Y2B|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2B|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2C|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2C|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2E|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2E|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2K|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2K|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|3IAK|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d (Pde4d)
With Papaverine.
pdb|3K4S|A Chain A, The Structure Of The Catalytic Domain Of Human Pde4d With
4- (3-Butoxy-4-Methoxyphenyl)methyl-2-Imidazolidone
Length = 349
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 61 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 120
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 121 FTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 180
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 181 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 240
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 241 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 298
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 299 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 343
>pdb|2PW3|A Chain A, Structure Of The Pde4d-Camp Complex
pdb|2PW3|B Chain B, Structure Of The Pde4d-Camp Complex
Length = 327
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F IP D L ++++++ +Y V YHN HA +V Q+ +L T +E
Sbjct: 40 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAV 99
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A H++DH G +N F T S LA++Y +S +E+HH +L +
Sbjct: 100 FTDLEILAAIFASAIHNVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEE 159
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IFQ L+ + + K+V + +L+TD++ + +VE +
Sbjct: 160 NCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYS 219
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ KP ++ + + +EFF QGD E+ + + M D+
Sbjct: 220 DRIQVLQNMVHCA-DLSNPTKPLQLYRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKHN 277
Query: 341 KDELPQMQVGFIDVICLPLYKVMSD-TFPWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR+ +Q
Sbjct: 278 A-SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQ 322
>pdb|1TAZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 1b
Length = 365
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 149/289 (51%), Gaps = 17/289 (5%)
Query: 115 DLVKQFHIPYDVLCRWVLSVKKNYRPVK--YHNWRHALNVAQTMFAMLKTGKMERFMSDL 172
+L+ +F IP L ++ +++ Y K YHN HA +V QT+ L M +S++
Sbjct: 51 NLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHXFLLRTGMVHCLSEI 110
Query: 173 EILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNI 231
E+L ++ A HD +H GT N+F +T+S AI+Y S +E+HH ++ D NI
Sbjct: 111 ELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQDDEMNI 170
Query: 232 FQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMM 291
F L+ ++ + LV +L+TD++ +F++ ++ E + ++ K L +++
Sbjct: 171 FINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLE---RIDKPKAL--SLLL 225
Query: 292 TACDVGAIAKPWEVQHKMAKLVADEFFDQGDLE-KLQLNTQPVAMMDRERKDELPQMQVG 350
A D+ K W V + K + +EFF QGD E +L L P + DR + Q Q+G
Sbjct: 226 HAADISHPTKQWLVHSRWTKALMEEFFRQGDKEAELGLPFSP--LCDR-TSTLVAQSQIG 282
Query: 351 FIDVICLPLYKVMSDTF-PWIQPLYDGTYENRK----HWQDLAEKVEMG 394
FID I P + V++D +QPL D +++ W+ + VE+G
Sbjct: 283 FIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVG 331
>pdb|3I8V|A Chain A, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
pdb|3I8V|B Chain B, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
Length = 354
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 15/324 (4%)
Query: 71 DTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW 130
D +L+ + + + L F D+ TC + +F E DL+K+F IP D + +
Sbjct: 31 DQEELLAQELENLNKWGLNIFXVSDYAGGRSLTCIMYM-IFQERDLLKKFRIPVDTMVTY 89
Query: 131 VLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189
+L+++ +Y V YHN HA +V Q+ +L T ++ +DLEIL L A HD+DH
Sbjct: 90 MLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDLEILAALFAAAIHDVDHP 149
Query: 190 GTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVE 248
G +N F T S LA++Y S +E+HH +L D +IFQ LS + + K+V
Sbjct: 150 GVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLSKRQRQSLRKMVI 209
Query: 249 NSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------EEKKQLLCGMMMTACDVGAIAK 301
+ +L+TD++ + +VE + ++ Q+L M+ A D+ K
Sbjct: 210 DMVLATDMSKHMTLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCA-DLSNPTK 268
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
P E+ + + EFF QGD E+ + + M D+ + + QVGFID I PL++
Sbjct: 269 PLELYRQWTDRIMAEFFQQGDRER-ERGMEISPMCDKHTA-SVEKSQVGFIDYIVHPLWE 326
Query: 362 VMSD-TFPWIQPLYDGTYENRKHW 384
+D P Q + D T E+ + W
Sbjct: 327 TWADLVHPDAQEILD-TLEDNRDW 349
>pdb|3TVX|A Chain A, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
pdb|3TVX|B Chain B, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
Length = 338
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 15/324 (4%)
Query: 71 DTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW 130
D +L+ + + + L F D+ TC + +F E DL+K+F IP D + +
Sbjct: 15 DQEELLAQELENLNKWGLNIFCVSDYAGGRSLTCIMYM-IFQERDLLKKFRIPVDTMVTY 73
Query: 131 VLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189
+L+++ +Y V YHN HA +V Q+ +L T ++ +DLEIL L A HD+DH
Sbjct: 74 MLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDLEILAALFAAAIHDVDHP 133
Query: 190 GTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVE 248
G +N F T S LA++Y S +E+HH +L D +IFQ LS + + K+V
Sbjct: 134 GVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLSKRQRQSLRKMVI 193
Query: 249 NSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------EEKKQLLCGMMMTACDVGAIAK 301
+ +L+TD++ + +VE + ++ Q+L M+ A D+ K
Sbjct: 194 DMVLATDMSKHMTLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCA-DLSNPTK 252
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
P E+ + + EFF QGD E+ + + M D+ + + QVGFID I PL++
Sbjct: 253 PLELYRQWTDRIMAEFFQQGDRER-ERGMEISPMCDKHTA-SVEKSQVGFIDYIVHPLWE 310
Query: 362 VMSD-TFPWIQPLYDGTYENRKHW 384
+D P Q + D T E+ + W
Sbjct: 311 TWADLVHPDAQEILD-TLEDNRDW 333
>pdb|2QYK|A Chain A, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
pdb|2QYK|B Chain B, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
Length = 335
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 158/321 (49%), Gaps = 14/321 (4%)
Query: 71 DTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW 130
D +L+ + + + L F D+ TC + +F E DL+K+F IP D + +
Sbjct: 12 DQEELLAQELENLNKWGLNIFCVSDYAGGRSLTCIMYM-IFQERDLLKKFRIPVDTMVTY 70
Query: 131 VLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189
+L+++ +Y V YHN HA +V Q+ +L T ++ +DLEIL L A HD+DH
Sbjct: 71 MLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDLEILAALFAAAIHDVDHP 130
Query: 190 GTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVE 248
G +N F T S LA++Y S +E+HH +L D +IFQ LS + + K+V
Sbjct: 131 GVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLSKRQRQSLRKMVI 190
Query: 249 NSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------EEKKQLLCGMMMTACDVGAIAK 301
+ +L+TD++ + +VE + ++ Q+L M+ A D+ K
Sbjct: 191 DMVLATDMSKHMTLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCA-DLSNPTK 249
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
P E+ + + EFF QGD E+ + + M D+ + + QVGFID I PL++
Sbjct: 250 PLELYRQWTDRIMAEFFQQGDRER-ERGMEISPMCDKHTA-SVEKSQVGFIDYIVHPLWE 307
Query: 362 VMSD-TFPWIQPLYDGTYENR 381
+D P Q + D +NR
Sbjct: 308 TWADLVHPDAQEILDTLEDNR 328
>pdb|1XM6|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XM6|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XN0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XN0|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XOS|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Sildenafil
Length = 398
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 69 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 128
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 129 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 188
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 189 HXDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 248
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + ++ M +
Sbjct: 249 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKERER--GMEISPMXDKH 305
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 306 TASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 353
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 8/257 (3%)
Query: 107 TIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVK-YHNWRHALNVAQTMFAMLKTGKM 165
T +F L++ FH+ L R+++ ++++Y YHN HA +V Q M LK K+
Sbjct: 45 TFHLFSLHGLIEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKL 104
Query: 166 ERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY-TTSTMEHHHFDQCVMIL 224
++ +IL L+A HDLDH G N F KT LA LY TS +E+HH+ V +L
Sbjct: 105 ANSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNTSVLENHHWRSAVGLL 164
Query: 225 NSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQ 284
G +F L + + + IL+TD++ + + F ++ G+ + +
Sbjct: 165 RESG--LFSHLPLESRQQMETQIGALILATDISRQNEYLSLFRSHLDRGDLCLEDTRHRH 222
Query: 285 LLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLE-KLQLNTQPVAMMDRERKDE 343
L+ M + D+ + WE+ + ++ V +EFF QGD+E K L P+ DR +
Sbjct: 223 LVLQMALKCADICNPCRTWELSKQWSEKVTEEFFHQGDIEKKYHLGVSPLC--DR-HTES 279
Query: 344 LPQMQVGFIDVICLPLY 360
+ +Q+GF+ + PL+
Sbjct: 280 IANIQIGFMTYLVEPLF 296
>pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 69 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 128
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 129 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 188
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 189 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 248
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + ++ M +
Sbjct: 249 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKERER--GMEISPMXDKH 305
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 306 TASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 353
>pdb|1XLZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XLZ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XM4|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 69 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 128
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 129 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 188
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 189 HXDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 248
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 249 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 306
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 307 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 353
>pdb|3ECM|A Chain A, Crystal Structure Of The Unliganded Pde8a Catalytic Domain
pdb|3ECN|A Chain A, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
pdb|3ECN|B Chain B, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
Length = 338
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 152/340 (44%), Gaps = 31/340 (9%)
Query: 78 DTIPSAQVYNLYSFTFIDFDLSDMDTCRAT-------IRMFLECDLVKQFHIPYDVLCRW 130
D +P + + + DFD+ +++ ++MF + + H L W
Sbjct: 1 DDVPPRIARAMENEEYWDFDIFELEAATHNRPLIYLGLKMFARFGICEFLHCSESTLRSW 60
Query: 131 VLSVKKNYRPVK-YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189
+ ++ NY YHN H+ +V L +++ + ++ + L+A HD+DH
Sbjct: 61 LQIIEANYHSSNPYHNSTHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHP 120
Query: 190 GTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGN-NIFQALSPHDYRIVMKLV 247
G N+F S LAILY T+ +E HH + D NIF+ + +DYR + + +
Sbjct: 121 GRTNSFLCNAGSELAILYNDTAVLESHHAALAFQLTTGDDKCNIFKNMERNDYRTLRQGI 180
Query: 248 ENSILSTDLAMYFKKKNRFIQ--------LVENGEFDWQSE---------EKKQLLCGMM 290
+ +L+T++ +F+ N+F+ L ENGE D E E + L+ M+
Sbjct: 181 IDMVLATEMTKHFEHVNKFVNSINKPLATLEENGETDKNQEVINTMLRTPENRTLIKRML 240
Query: 291 MTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKD-ELPQMQV 349
+ DV +P + + A +++E+F Q D EK Q PV M +R +P+ Q+
Sbjct: 241 IKCADVSNPCRPLQYCIEWAARISEEYFSQTDEEKQQ--GLPVVMPVFDRNTCSIPKSQI 298
Query: 350 GFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAE 389
FID ++ D F + L N K+W+ L E
Sbjct: 299 SFIDYFITDMFDAW-DAFVDLPDLMQHLDNNFKYWKGLDE 337
>pdb|3G45|A Chain A, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
pdb|3G45|B Chain B, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
Length = 421
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 127 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 186
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 187 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 246
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 247 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 306
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 307 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 364
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 365 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 411
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6-
Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One
Length = 318
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 8/257 (3%)
Query: 107 TIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVK-YHNWRHALNVAQTMFAMLKTGKM 165
T +F L++ FH+ L R+++ ++++Y YHN HA +V Q M LK K+
Sbjct: 36 TFHLFSLHGLIEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKL 95
Query: 166 ERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY-TTSTMEHHHFDQCVMIL 224
++ +IL L+A HDLDH G N F KT LA LY TS +E+HH+ V +L
Sbjct: 96 ANSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNTSVLENHHWRSAVGLL 155
Query: 225 NSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQ 284
G +F L + + + IL+TD++ + + F ++ G+ + +
Sbjct: 156 RESG--LFSHLPLESRQQMETQIGALILATDISRQNEYLSLFRSHLDRGDLCLEDTRHRH 213
Query: 285 LLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLE-KLQLNTQPVAMMDRERKDE 343
L+ M + D+ + WE+ + ++ V +EFF QGD+E K L P+ DR +
Sbjct: 214 LVLQMALKCADICNPCRTWELSKQWSEKVTEEFFHQGDIEKKYHLGVSPLC--DRH-TES 270
Query: 344 LPQMQVGFIDVICLPLY 360
+ +Q+GF+ + PL+
Sbjct: 271 IANIQIGFMTYLVEPLF 287
>pdb|3LY2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|E Chain E, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|F Chain F, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|G Chain G, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|H Chain H, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
Length = 357
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 69 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 128
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 129 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 188
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 189 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 248
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 249 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 306
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 307 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 353
>pdb|2QYL|A Chain A, Crystal Structure Of Pde4b2b In Complex With Inhibitor Npv
Length = 337
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 49 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 108
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 109 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 168
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 169 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 228
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 229 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 286
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 287 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 333
>pdb|1TB5|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
pdb|1TB5|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
Length = 381
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 52 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 111
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 112 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 171
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 172 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 231
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 232 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 289
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 290 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 336
>pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XLX|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XOT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1XOT|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1Y2H|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2H|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
Length = 398
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 69 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 128
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 129 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 188
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 189 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 248
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 249 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 306
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 307 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 353
>pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509.
pdb|3KKT|B Chain B, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509
Length = 398
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 69 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 128
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 129 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 188
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 189 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 248
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 249 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 306
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 307 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 353
>pdb|3O0J|A Chain A, Pde4b In Complex With Ligand An2898
Length = 323
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 38 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 97
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 98 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 157
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 158 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 217
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 218 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 275
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 276 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 322
>pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b
pdb|1F0J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b
Length = 377
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 48 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 107
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 108 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 167
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 168 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 227
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 228 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 285
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 286 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 332
>pdb|1RO6|A Chain A, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO6|B Chain B, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO9|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1RO9|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1ROR|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
pdb|1ROR|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
Length = 378
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 49 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 108
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 109 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 168
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 169 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 228
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 229 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 286
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387
+ + QVGFID I PL++ +D P Q + D +NR +Q +
Sbjct: 287 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSM 333
>pdb|3HMV|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
pdb|3HMV|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
Length = 378
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 143/286 (50%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 49 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 108
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 109 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 168
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 169 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 228
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 229 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 286
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR +Q
Sbjct: 287 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQ 331
>pdb|3D3P|A Chain A, Crystal Structure Of Pde4b Catalytic Domain In Complex
With A Pyrazolopyridine Inhibitor
pdb|3FRG|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3GWT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3O56|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
pdb|3O57|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
Length = 353
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 143/286 (50%), Gaps = 13/286 (4%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERF 168
+F E DL+K F I D ++++++ +Y V YHN HA +VAQ+ +L T ++
Sbjct: 49 IFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAV 108
Query: 169 MSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSD 227
+DLEIL + A HD+DH G +N F T S LA++Y S +E+HH +L +
Sbjct: 109 FTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEE 168
Query: 228 GNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQS-------E 280
+IF L+ + + K+V + +L+TD++ + +VE +
Sbjct: 169 HCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYT 228
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
++ Q+L M+ A D+ K E+ + + +EFF QGD E+ + + M D+
Sbjct: 229 DRIQVLRNMVHCA-DLSNPTKSLELYRQWTDRIMEEFFQQGDKER-ERGMEISPMCDKHT 286
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQ 385
+ + QVGFID I PL++ +D P Q + D +NR +Q
Sbjct: 287 A-SVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQ 331
>pdb|3V93|A Chain A, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|B Chain B, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|C Chain C, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|D Chain D, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|E Chain E, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|F Chain F, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|G Chain G, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|H Chain H, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V94|A Chain A, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|B Chain B, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|C Chain C, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|D Chain D, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|E Chain E, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|F Chain F, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|G Chain G, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|H Chain H, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
Length = 345
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 117/249 (46%), Gaps = 9/249 (3%)
Query: 131 VLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGK-MERFMSDLEILGLLVACLCHDLDHR 189
V +V+ NYRP YHN HA +V Q F+++ K + ++ LE A L HD+ H
Sbjct: 86 VAAVENNYRPNPYHNAIHAADVLQGTFSLVSAAKPLMEHLTPLECKAAAFAALTHDVCHP 145
Query: 190 GTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVE 248
G NAF + P++ ++ T+E H +LN + ++ + +V
Sbjct: 146 GRTNAFLAAVQDPVSFKFSGKGTLEQLHTATAFELLNVTEFDFTSSMDNASFLEFKNIVS 205
Query: 249 NSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHK 308
+ I TD++++ + + + G FD +E + +++ A D+GA ++ + K
Sbjct: 206 HLIGHTDMSLHSETVAKHGAKLSAGGFDCTCKEDRLEALSLLLHAADIGASSRGVAIARK 265
Query: 309 MAKLVADEFFDQGDLEKLQ-LNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF 367
++ EF DQ + E+ + L P E + + Q+ F+D +P + ++ F
Sbjct: 266 WL-VILQEFADQAEDERRRGLPVTP----GFETPSSVEKSQIPFLDFFVIPTFDLLHQLF 320
Query: 368 PWI-QPLYD 375
P I +PL++
Sbjct: 321 PSIEEPLHN 329
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SOJ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|E Chain E, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|F Chain F, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|G Chain G, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|H Chain H, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|J Chain J, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|K Chain K, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|L Chain L, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|I Chain I, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
Length = 420
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 51/299 (17%)
Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAM---------- 159
+F + L++ F IP + +++ YR + YHN HA +V ++ +
Sbjct: 50 LFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHNRIHATDVLHAVWYLTTRPVPGLQQ 109
Query: 160 ----------------LKTGKMERFMSD------------------LEILGLLVACLCHD 185
+ G++ S LE++ L VA HD
Sbjct: 110 IHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHD 169
Query: 186 LDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCV-MILNSDGNNIFQALSPHDYRIV 243
DH G NAF T +P A+LY S +E+HH + L+ N L +++
Sbjct: 170 YDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRF 229
Query: 244 MKLVENSILSTDLAMYF---KKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIA 300
LV +IL+TDL +F + N V + +W +E + L+C + + D+ A
Sbjct: 230 RFLVIEAILATDLKKHFDFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPA 289
Query: 301 KPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPL 359
K ++ K + + +EF++QGD E+ L MDR +L ++Q FI I PL
Sbjct: 290 KVRDLHLKWTEGIVNEFYEQGD-EEANLGLPISPFMDRSSP-QLAKLQESFITHIVGPL 346
>pdb|3LFV|A Chain A, Crystal Structure Of Unliganded Pde5a Gaf Domain
pdb|3LFV|B Chain B, Crystal Structure Of Unliganded Pde5a Gaf Domain
Length = 431
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGT-SSFTDRD 53
DPRFN E+D+ TGY T SILC+PI ++ EV+GVAQ INK G +FT++D
Sbjct: 159 DPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKD 210
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 20 SILCVPI-NSYEGEVIGVAQIINKTD 44
S+LC PI N + +VIGV Q++NK +
Sbjct: 361 SLLCTPIKNGKKNKVIGVCQLVNKME 386
>pdb|2K31|A Chain A, Solution Structure Of Cgmp-Binding Gaf Domain Of
Phosphodiesterase 5
Length = 176
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGT-SSFTDRD 53
DPRFN E+D+ TGY T SILC+PI ++ EV+GVAQ INK G +FT++D
Sbjct: 86 DPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKD 137
>pdb|3MF0|A Chain A, Crystal Structure Of Pde5a Gaf Domain (89-518)
pdb|3MF0|B Chain B, Crystal Structure Of Pde5a Gaf Domain (89-518)
Length = 432
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGT-SSFTDRD 53
DPRFN E+D+ TGY T SILC+PI ++ EV+GVAQ INK G +FT++D
Sbjct: 160 DPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKD 211
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 20 SILCVPI-NSYEGEVIGVAQIINKTD 44
S+LC PI N + +VIGV Q++NK +
Sbjct: 362 SLLCTPIKNGKKNKVIGVCQLVNKME 387
>pdb|2ZMF|A Chain A, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
pdb|2ZMF|B Chain B, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
Length = 189
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRD 53
DPRFN E+D TGYTT +ILC PI S G VIGV Q +NK G S+F+ D
Sbjct: 110 ADPRFNREVDLYTGYTTRNILCXPIVS-RGSVIGVVQXVNKISG-SAFSKTD 159
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide
Phosphodiesterase 2a, Containing The Gaf A And Gaf B
Domains
Length = 368
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 4 PRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGT--SSFTDRDIEVA 57
P F +D TG+ T +ILC PI + EVIGVA+++NK +G S F D D+ A
Sbjct: 272 PLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKF-DEDLATA 326
>pdb|1YKD|A Chain A, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
pdb|1YKD|B Chain B, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
Length = 398
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 9 EIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIE---VALECL 61
+ID++ GY T S+LC+P+ + + E+IGV Q++NK T F + E +A EC
Sbjct: 297 QIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK-TGEFPPYNPETWPIAPECF 351
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 3 DPR--FNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINK 42
DPR F + ++ TGY T ++L +P+ S +G ++ V Q++NK
Sbjct: 102 DPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143
>pdb|3DBA|A Chain A, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
pdb|3DBA|B Chain B, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
Length = 180
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 6 FNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSY 63
F++ +D++TGYTT +++ +PI + EV+ V +NK + S F+ D EV + L++
Sbjct: 111 FSDYLDKKTGYTTVNMMAIPITQGK-EVLAVVMALNKLNA-SEFSKEDEEVFKKYLNF 166
>pdb|3K2D|A Chain A, Crystal Structure Of Immunogenic Lipoprotein A From Vibrio
Vulnificus
pdb|3K2D|B Chain B, Crystal Structure Of Immunogenic Lipoprotein A From Vibrio
Vulnificus
Length = 237
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 492 KDKDRELSNLSTSRSDDIHNKNEENFGRMFPTMSYFT 528
+DK+ NL +R D++ N+N +NF + + T +T
Sbjct: 194 EDKESPYVNLIVARQDNVQNENVQNFVKAYQTEEVYT 230
>pdb|2XSS|A Chain A, Crystal Structure Of Gafb From The Human Phosphodiesterase
5
pdb|2XSS|B Chain B, Crystal Structure Of Gafb From The Human Phosphodiesterase
5
Length = 181
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 20 SILCVPI-NSYEGEVIGVAQIINKTD 44
S+LC PI N + +VIGV Q++NK +
Sbjct: 121 SLLCTPIKNGKKNKVIGVCQLVNKME 146
>pdb|3KHY|A Chain A, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3KHY|B Chain B, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 384
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 221 VMILNSDGNNI-FQALSPHDYR-IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQ 278
+++LN +++ F ++PH + +V L EN I + + + FK +++ ++ +ENG +
Sbjct: 4 ILVLNCGSSSVKFALINPHTSQSLVTGLAEN-IATKNCKVVFKAEHKIVKYLENGSYKDV 62
Query: 279 SEEKKQLL 286
E K L
Sbjct: 63 FEXLKDFL 70
>pdb|3T7A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp At Ph 5.2
pdb|3T9A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 7.0
pdb|3T9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 5.2
pdb|3T9C|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And Inositol Hexakisphosphate
(Ip6)
pdb|3T9D|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And 5- (Pp)-Ip5 (5-Ip7)
pdb|3T9E|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp, 5-(Pp)-Ip5 (5-Ip7) And Mgf3
(Transition State Mimic)
pdb|3T9F|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And 1,5- (Pp)2-Ip4 (1,5-Ip8)
pdb|4HN2|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And A Substrate Analog 5pa-Ip5
Length = 330
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 60 CLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQ 119
CL++ T G D + + V ++ F+F+ + D C + + +L Q
Sbjct: 262 CLAFKQTVCGFDLLRANGQSY----VCDVNGFSFVKNSMKYYDDCAKILGNIVMRELAPQ 317
Query: 120 FHIPYDV 126
FHIP+ +
Sbjct: 318 FHIPWSI 324
>pdb|3T54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Atp And Cadmium
pdb|3T99|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And In The Absence Of Cadmium At Ph
7.0
Length = 334
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 60 CLSYHATASGEDTRKLIKDTIPSAQVY--NLYSFTFIDFDLSDMDTCRATIRMFLECDLV 117
CL++ T G D + + Q Y ++ F+F+ + D C + + +L
Sbjct: 266 CLAFKQTVCGFDLLRA------NGQSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMRELA 319
Query: 118 KQFHIPYDV 126
QFHIP+ +
Sbjct: 320 PQFHIPWSI 328
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 327 QLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHW 384
Q+++Q V +++ E+ + P + F+D I + +K +SD F + P YDG +E+ W
Sbjct: 293 QISSQRV-VLEVEKAESNPGSKKAFLDEILI--WKEISDNFCYYNPGYDG-FESFPSW 346
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 16/193 (8%)
Query: 74 KLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCR---- 129
KL+ DTI S+ ++ + F ++D +DT +++ ++ ++P D +
Sbjct: 247 KLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-------QKINMPSDATLQGSFK 299
Query: 130 -WVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188
+V + ++ K HN + VA +LKT E + L+IL A +
Sbjct: 300 EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKT---ESDKTSLKILFTPTANEVFNFIS 356
Query: 189 RGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVE 248
+ F ++ +A + T T+E+ + + V++ N IF S + + +E
Sbjct: 357 TTKDRVFLATYDNVVAKV-VTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415
Query: 249 NSILSTDLAMYFK 261
NSI+ + ++ K
Sbjct: 416 NSIVPPTIYLWVK 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,945,976
Number of Sequences: 62578
Number of extensions: 645806
Number of successful extensions: 1794
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 104
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)