Query psy8796
Match_columns 536
No_of_seqs 293 out of 1378
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 19:30:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3689|consensus 100.0 5E-100 1E-104 835.5 33.4 381 1-391 265-678 (707)
2 PF00233 PDEase_I: 3'5'-cyclic 100.0 3.1E-70 6.7E-75 544.1 23.0 235 143-381 1-237 (237)
3 KOG3688|consensus 100.0 1E-66 2.3E-71 536.4 16.3 273 87-367 156-436 (554)
4 KOG1229|consensus 100.0 1E-57 2.2E-62 470.0 18.8 298 88-389 443-763 (775)
5 cd00077 HDc Metal dependent ph 98.3 2.1E-07 4.5E-12 81.2 1.3 142 143-318 1-145 (145)
6 KOG3689|consensus 97.9 2.5E-06 5.5E-11 96.1 -0.6 63 1-65 85-147 (707)
7 PF01590 GAF: GAF domain; Int 97.7 7E-05 1.5E-09 67.2 5.6 63 2-66 76-152 (154)
8 PRK11061 fused phosphoenolpyru 97.4 0.00026 5.6E-09 82.0 7.0 66 1-71 91-156 (748)
9 PF13185 GAF_2: GAF domain; PD 97.2 0.00054 1.2E-08 61.0 5.7 53 11-66 93-145 (148)
10 TIGR01817 nifA Nif-specific re 97.2 0.00051 1.1E-08 76.5 6.2 63 2-67 93-155 (534)
11 PF13492 GAF_3: GAF domain; PD 96.7 0.0024 5.2E-08 55.4 5.0 54 10-66 72-125 (129)
12 smart00471 HDc Metal dependent 96.0 0.009 1.9E-07 50.8 4.3 51 141-197 1-51 (124)
13 smart00065 GAF Domain present 95.6 0.032 7E-07 47.2 6.3 50 15-66 87-137 (149)
14 PRK15429 formate hydrogenlyase 95.6 0.0091 2E-07 68.7 3.5 67 2-72 94-164 (686)
15 PRK15429 formate hydrogenlyase 94.8 0.047 1E-06 62.9 6.2 54 14-71 290-343 (686)
16 PRK05022 anaerobic nitric oxid 94.4 0.083 1.8E-06 58.8 6.7 48 16-66 107-154 (509)
17 COG2203 FhlA FOG: GAF domain [ 94.1 0.052 1.1E-06 47.8 3.6 48 18-67 114-161 (175)
18 PF01966 HD: HD domain; Inter 93.5 0.083 1.8E-06 45.3 3.7 43 146-193 2-44 (122)
19 PRK12705 hypothetical protein; 90.7 0.044 9.5E-07 60.9 -1.7 137 4-227 244-381 (508)
20 PRK05092 PII uridylyl-transfer 90.4 4 8.7E-05 49.0 14.1 144 141-323 487-649 (931)
21 COG1956 GAF domain-containing 89.8 0.58 1.3E-05 44.5 5.1 44 17-63 112-155 (163)
22 TIGR01353 dGTP_triPase deoxygu 89.1 0.84 1.8E-05 49.2 6.5 102 142-247 35-145 (381)
23 PRK10119 putative hydrolase; P 88.0 0.87 1.9E-05 45.9 5.4 48 134-188 14-62 (231)
24 TIGR01693 UTase_glnD [Protein- 88.0 5.7 0.00012 47.2 13.0 143 140-324 421-585 (850)
25 COG1078 HD superfamily phospho 87.9 0.6 1.3E-05 51.0 4.5 72 146-226 53-126 (421)
26 PRK01286 deoxyguanosinetriphos 87.4 0.52 1.1E-05 50.0 3.5 69 146-226 64-132 (336)
27 PRK03059 PII uridylyl-transfer 87.3 7.1 0.00015 46.6 13.2 143 140-322 433-595 (856)
28 PRK13558 bacterio-opsin activa 87.1 1.2 2.6E-05 50.7 6.5 56 20-78 390-447 (665)
29 PRK00275 glnD PII uridylyl-tra 87.0 8.3 0.00018 46.2 13.6 143 141-323 454-616 (895)
30 TIGR02851 spore_V_T stage V sp 86.8 1.5 3.3E-05 42.5 6.1 46 18-65 131-176 (180)
31 KOG2681|consensus 86.5 1.3 2.8E-05 48.2 5.8 58 141-198 69-131 (498)
32 PRK05007 PII uridylyl-transfer 86.2 14 0.00029 44.4 14.8 142 140-323 454-617 (884)
33 PRK01759 glnD PII uridylyl-tra 85.1 13 0.00027 44.5 13.8 143 141-323 430-592 (854)
34 TIGR03760 ICE_TraI_Pfluor inte 84.3 2.8 6.1E-05 41.9 6.8 47 143-189 61-120 (218)
35 COG0232 Dgt dGTP triphosphohyd 83.6 1.2 2.7E-05 48.3 4.1 73 147-226 71-143 (412)
36 PRK04374 PII uridylyl-transfer 82.6 29 0.00064 41.6 15.4 142 140-323 442-605 (869)
37 PRK05318 deoxyguanosinetriphos 82.2 1.7 3.7E-05 47.7 4.7 78 143-226 56-139 (432)
38 TIGR00277 HDIG uncharacterized 81.7 2.4 5.1E-05 33.8 4.3 41 145-192 5-45 (80)
39 PRK00227 glnD PII uridylyl-tra 81.0 14 0.00031 43.0 11.7 139 139-324 372-523 (693)
40 PRK03007 deoxyguanosinetriphos 80.4 1.7 3.6E-05 47.7 3.8 72 143-226 68-140 (428)
41 PRK03381 PII uridylyl-transfer 80.1 37 0.0008 40.2 14.9 138 140-324 413-563 (774)
42 PRK01096 deoxyguanosinetriphos 79.8 2.2 4.7E-05 47.0 4.5 55 142-196 58-121 (440)
43 PRK10885 cca multifunctional t 79.5 45 0.00099 36.4 14.5 40 140-191 219-262 (409)
44 PRK04926 dgt deoxyguanosinetri 77.6 2.9 6.3E-05 46.7 4.7 55 141-195 61-128 (503)
45 TIGR03401 cyanamide_fam HD dom 77.5 2.8 6.1E-05 42.1 4.2 64 118-188 31-96 (228)
46 COG2206 c-di-GMP phosphodieste 76.3 15 0.00033 38.9 9.5 53 138-194 142-194 (344)
47 TIGR02916 PEP_his_kin putative 74.3 4.9 0.00011 46.2 5.6 47 18-66 409-455 (679)
48 COG3294 HD supefamily hydrolas 72.0 12 0.00025 37.9 6.7 100 134-257 50-161 (269)
49 COG3605 PtsP Signal transducti 68.0 5.4 0.00012 45.2 3.8 43 18-63 107-149 (756)
50 PRK12704 phosphodiesterase; Pr 62.9 11 0.00024 42.4 5.2 76 125-227 317-393 (520)
51 TIGR00488 putative HD superfam 59.0 8.8 0.00019 35.9 3.0 39 144-189 8-46 (158)
52 TIGR03319 YmdA_YtgF conserved 57.5 22 0.00049 40.0 6.4 116 126-305 312-428 (514)
53 PRK00106 hypothetical protein; 53.3 20 0.00043 40.6 5.1 128 110-304 321-448 (535)
54 PF07514 TraI_2: Putative heli 49.8 19 0.00042 38.1 4.1 44 146-189 68-119 (327)
55 TIGR00295 conserved hypothetic 49.1 40 0.00086 31.9 5.8 68 137-227 7-74 (164)
56 PRK13298 tRNA CCA-pyrophosphor 47.5 3E+02 0.0064 30.4 12.8 17 175-191 247-263 (417)
57 PF02743 Cache_1: Cache domain 45.9 21 0.00046 29.0 3.0 23 17-39 12-34 (81)
58 TIGR03276 Phn-HD phosphonate d 45.8 8.7 0.00019 37.3 0.7 40 136-189 17-58 (179)
59 COG1418 Predicted HD superfami 44.7 39 0.00085 33.8 5.2 49 138-193 30-78 (222)
60 PF09884 DUF2111: Uncharacteri 42.1 37 0.0008 29.0 3.8 29 13-41 53-81 (84)
61 PF00571 CBS: CBS domain CBS d 41.6 26 0.00056 26.1 2.6 20 19-38 28-47 (57)
62 COG4341 Predicted HD phosphohy 41.0 9.2 0.0002 36.7 0.1 77 128-226 14-91 (186)
63 PF14827 Cache_3: Sensory doma 39.8 28 0.0006 30.7 2.9 19 22-40 92-110 (116)
64 PRK12703 tRNA 2'-O-methylase; 38.2 51 0.0011 35.2 5.1 43 142-191 185-227 (339)
65 TIGR01596 cas3_HD CRISPR-assoc 37.0 39 0.00084 31.3 3.6 42 147-188 3-45 (177)
66 PF12210 Hrs_helical: Hepatocy 33.7 68 0.0015 28.1 4.2 41 352-392 30-70 (96)
67 PRK07152 nadD putative nicotin 33.1 34 0.00074 36.2 2.8 39 145-190 197-235 (342)
68 PRK11031 guanosine pentaphosph 32.4 90 0.0019 34.9 6.1 59 127-189 309-367 (496)
69 TIGR02692 tRNA_CCA_actino tRNA 29.5 65 0.0014 35.7 4.4 40 143-191 257-296 (466)
70 PF12917 HD_2: HD containing h 29.2 88 0.0019 31.3 4.7 39 147-187 32-70 (215)
71 COG4048 Uncharacterized protei 28.4 66 0.0014 28.9 3.3 34 11-45 69-102 (123)
72 COG3604 FhlA Transcriptional r 27.4 1.3E+02 0.0028 34.1 6.0 52 3-57 122-180 (550)
73 KOG1348|consensus 25.6 46 0.001 35.9 2.2 24 141-165 55-78 (477)
74 COG4339 Uncharacterized protei 24.6 2E+02 0.0043 28.0 6.0 141 115-317 11-155 (208)
75 PRK11388 DNA-binding transcrip 23.8 1.3E+02 0.0029 34.4 5.7 27 17-43 141-167 (638)
76 PRK10188 DNA-binding transcrip 22.6 3.6E+02 0.0078 27.0 7.9 123 10-150 107-231 (240)
77 cd04627 CBS_pair_14 The CBS do 21.5 77 0.0017 27.1 2.5 21 19-39 97-117 (123)
78 PRK10854 exopolyphosphatase; P 21.2 2E+02 0.0044 32.2 6.4 60 126-189 314-375 (513)
79 PF01614 IclR: Bacterial trans 21.1 1.1E+02 0.0023 26.9 3.4 33 20-55 80-112 (129)
80 PF13596 PAS_10: PAS domain; P 20.7 1.1E+02 0.0023 25.9 3.2 25 17-41 79-103 (106)
No 1
>KOG3689|consensus
Probab=100.00 E-value=4.9e-100 Score=835.52 Aligned_cols=381 Identities=48% Similarity=0.855 Sum_probs=354.1
Q ss_pred CCCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHh-------------------
Q psy8796 1 MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECL------------------- 61 (536)
Q Consensus 1 ~~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~------------------- 61 (536)
+.||+|+++.|. .|.+.+++||+||.+.+|++|||+|++||.+|+ +|+..||..+..+.
T Consensus 265 ~~~~~f~~q~d~-~~~~~~~il~~pi~~~~~~~igv~~~~nk~~g~-~f~~~de~~~~~~~~~~gl~i~~~~~y~~~~~s 342 (707)
T KOG3689|consen 265 IADPRFDKQVDE-DGTGIRPILCIPIKNKKGEVIGVQQLVNKEDGN-PFSRNDEDLFEAFTIFCGLSIHNTHMYSKINKS 342 (707)
T ss_pred cccccccccccc-cccccceeEEEecccccCceecceeeeccccCC-ccccchHHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 469999999998 888888899999999889999999999999998 99999996544332
Q ss_pred -----------HhhhcccCccccchhcccCCccccccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHH
Q psy8796 62 -----------SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW 130 (536)
Q Consensus 62 -----------s~~a~~~~e~~~kLl~~~ip~~~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~F 130 (536)
+||+.+..++.. .+| +...++..|.|+++.+++.++..+++.||+++|++++|+|+.++|++|
T Consensus 343 ~~r~~v~~e~l~~h~~~~~~e~~-----~~~-~~~~~l~d~~f~d~~~~~~~l~~~~~~mf~~l~lv~~f~I~~~tL~r~ 416 (707)
T KOG3689|consen 343 EPRQGVALEFLSYHAKALEEEVQ-----WGP-ATILKLLDFFFSDRLLSENELTKCTFRMFQDLGLVKKFKIDVETLCRF 416 (707)
T ss_pred ccccchhHHHHHHHHhhhHHhhc-----ccc-hhhhccccceeccccCCCchHHHHHHHHHHHcCcceeeccCHHHHHHH
Confidence 222222222222 224 445678999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC
Q psy8796 131 VLSVKKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT 209 (536)
Q Consensus 131 l~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~ 209 (536)
|++|+++|| +||||||+||+||+|+||.+|+++++..+||++|++|+++||+|||+||||+||.|++|++||||.+|++
T Consensus 417 lltV~k~Yr~~v~YHNw~HAf~VaQ~m~~lL~t~~L~~~fTdlEiLalliAalcHDlDHrGtNN~f~iks~s~LA~lY~~ 496 (707)
T KOG3689|consen 417 LLTVEKNYRSNVPYHNWRHAFDVAQAMFALLKTPKLQNKFTDLEILALLIAALCHDLDHRGTNNSYLIKSNSPLAQLYND 496 (707)
T ss_pred HhhhhhccccCCcchhHHHHHHHHHHHHHHHhchhHHhhcChHHHHHHHHHHHHccCCCCCCCcHHHHhcCCHHHHHhCC
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc-CCCCCCcHHHHHHHH
Q psy8796 210 -STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVEN-GEFDWQSEEKKQLLC 287 (536)
Q Consensus 210 -SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~-~~~d~~~~e~r~lll 287 (536)
|||||||++++++||++++||||+||+.++|++++++|+++|||||||+||+++.+|+++++. |.+++.+.+||.+++
T Consensus 497 ~SvLE~HH~~~~~~lLqe~~~nIfsnLs~~~~~~~~~~i~~~ILATDla~h~~~~~~lk~~v~~~~~~~~~~~~hr~lvl 576 (707)
T KOG3689|consen 497 SSVLENHHFAQAFKLLQEEGCNIFSNLSKKQYQQIRKLIIDAILATDLALHFKKRADLKEMVETKGVYDLENYSHRILVL 576 (707)
T ss_pred ccHHHHHHHHHHHHHHhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred HHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhC
Q psy8796 288 GMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF 367 (536)
Q Consensus 288 ~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~ 367 (536)
+|+||||||||++|||+++++|+++|++|||+|||+|+ .++..|+|||||++.. +|++|||||++||+|+|+++++++
T Consensus 577 ~mmmtacDLSn~TKpwei~~qwa~~I~~EFf~QGDeek-~lg~~p~pmmDR~k~~-vp~~QvgFid~I~~Plyet~a~l~ 654 (707)
T KOG3689|consen 577 AMMMTACDLSNPTKPWEIQKQWAELIAEEFFDQGDEEK-ELGLEPSPMMDRDKAS-VPKLQVGFIDYICIPLYETWADLV 654 (707)
T ss_pred HHHHHHhhccCCcCCccHHHHHHHHHHHHHHhcchHHH-HcCCCCCcccccCccc-CchhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999777 5789999999999865 999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Q psy8796 368 PWIQPLYDGTYENRKHWQDLAEKV 391 (536)
Q Consensus 368 P~l~~l~~~l~~N~~~W~~l~e~~ 391 (536)
|+.+|+++.+.+|+.+|++++++.
T Consensus 655 ~~~~pmld~l~~Nr~~w~~l~~~~ 678 (707)
T KOG3689|consen 655 PDAQPMLDGLEDNREWWQSLIPES 678 (707)
T ss_pred cchhhHHHHHHHhHHHHHHhhhhh
Confidence 999999999999999999999854
No 2
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=100.00 E-value=3.1e-70 Score=544.05 Aligned_cols=235 Identities=43% Similarity=0.752 Sum_probs=220.1
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHH
Q psy8796 143 YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCV 221 (536)
Q Consensus 143 YHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~ 221 (536)
||||.||+||+|++|+++..+++...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.++
T Consensus 1 yHN~~Ha~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~~N~flv~~~~~LA~~Y~d~SvLE~~H~~~~~ 80 (237)
T PF00233_consen 1 YHNFRHAADVLQFVYYLLSNGGLREYLSPLEIFALLIAALCHDVDHPGVNNAFLVKTNSPLAILYNDRSVLENHHCALAF 80 (237)
T ss_dssp SSSHHHHHHHHHHHHHHHHHGGGGTTS-HHHHHHHHHHHHHTTTT-SSSCHHHHHHTTSHHHHHTTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHccCccccCCHHHHHHHHHHHHHhcCCCCccccchhhccccchhhhcCccCCccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCC
Q psy8796 222 MILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301 (536)
Q Consensus 222 ~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~R 301 (536)
.||+++++|||.++++++++.+|++|+++||||||++||+++++|++.+..+.. .+.++|.++++++||||||||++|
T Consensus 81 ~lL~~~~~nil~~l~~~~~~~~r~~ii~~ILaTDm~~h~~~~~~~~~~~~~~~~--~~~~~r~~~l~~ll~~ADisn~~r 158 (237)
T PF00233_consen 81 QLLRKEECNILSNLSEDDYQEFRKLIIELILATDMSKHFELLSKLQEKLDSGDF--LDEDDRQLLLQLLLKAADISNPAR 158 (237)
T ss_dssp HHHTSTTTTTTTTS-HHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHHHTTEB--TTTCHHHHHHHHHHHHHHTGGGGS
T ss_pred HHHHhhhhhhhcchhhhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhcc--cchHHHHHHHHhcccccccccccC
Confidence 999999999999999999999999999999999999999999999999987643 122389999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCC-cHHHHHHHHHH
Q psy8796 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPW-IQPLYDGTYEN 380 (536)
Q Consensus 302 p~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~-l~~l~~~l~~N 380 (536)
||+++++|+.++++|||.|||+|+. ++.+|.|+|||.+. ++|++|+|||++||.|+|+++++++|+ ++++++++++|
T Consensus 159 p~~~~~kW~~~l~~Ef~~Qgd~E~~-~gl~~s~~~dr~~~-~~~~~Qi~Fi~~iv~Plf~~l~~~~p~~~~~~~~~l~~N 236 (237)
T PF00233_consen 159 PWDVAKKWAERLMEEFFRQGDLEKE-LGLPVSPLMDRDKT-NLAKSQIGFIDFIVKPLFEALAKLFPEDLQPLLDQLEEN 236 (237)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSCTTGSTTTG-GHHHHHHHHHHHTHHHHHHHHHHHSTTTGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhhhHHHH-cCCCcccccCcccc-CcccCCCchhHHHHHHHHHHHHHHCHHHHHHHHHHHHcC
Confidence 9999999999999999999999984 56777889999864 999999999999999999999999999 99999999999
Q ss_pred H
Q psy8796 381 R 381 (536)
Q Consensus 381 ~ 381 (536)
+
T Consensus 237 r 237 (237)
T PF00233_consen 237 R 237 (237)
T ss_dssp H
T ss_pred C
Confidence 7
No 3
>KOG3688|consensus
Probab=100.00 E-value=1e-66 Score=536.44 Aligned_cols=273 Identities=31% Similarity=0.503 Sum_probs=252.2
Q ss_pred cccceeeecCCCCchh----hhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCC--CCCCCchhhHHHHHHHHHHHH
Q psy8796 87 NLYSFTFIDFDLSDMD----TCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR--PVKYHNWRHALNVAQTMFAML 160 (536)
Q Consensus 87 ~l~s~~F~~~~l~~~e----l~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~--~~pYHN~~HA~dV~Q~~~~lL 160 (536)
++..|.|+.|.+++.. +-.+.+.+|.++|++.+|+||...|..|+..++.+|. .|||||-.||+||+|.+++++
T Consensus 156 ~~d~w~FdVf~lneas~~HaLk~~~~El~~ry~~I~rfkip~~~l~~f~~ale~gy~k~knPyhn~~haadVtqt~H~~l 235 (554)
T KOG3688|consen 156 DVDKWSFDVFALNEASGGHALKFVYYELFTRYNLIHRFKIPHGCLELFAHALEVGYSKYKNPYHNLIHAADVTQTVHYHL 235 (554)
T ss_pred HhhhceecceecccccccchhHHHHHhhhhhhcchhhhcccHHHHHHHHHHHHhcccCCCCCccchhhhhhcccCchHHh
Confidence 4577999999988654 3345678999999999999999999999999999997 499999999999999999999
Q ss_pred hhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHH
Q psy8796 161 KTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHD 239 (536)
Q Consensus 161 ~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~ 239 (536)
...++-+.|+.+|++|+++||+.||++|+|+||+|+|++++.-|+|||| |||||||++.+|++|+.++.||+.||++++
T Consensus 236 ~~Tgim~~Lt~LEllA~~faAaiHDYeHtGtTNnFhiQt~s~~AiLYNDRSVLENHH~sas~rLl~edE~nil~nLs~de 315 (554)
T KOG3688|consen 236 LHTGIMNWLTELELLALLFAAAIHDYEHTGTTNNFHIQTRSDKAILYNDRSVLENHHASASFRLLQEDEMNILINLSKDE 315 (554)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccceEEEecCceeEEeccHHHHhhhhHHHHHHHhcchhhhHHhcCCHHH
Confidence 9888989999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhh
Q psy8796 240 YRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFD 319 (536)
Q Consensus 240 ~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~ 319 (536)
++.+|.+||++||||||+.||..+..+++.+...+ ..+|...+++++||||||+|+|||.++.+|..+|++|||+
T Consensus 316 ~relR~LViEmVLaTDms~HFqqiktmk~~L~~~e-----~iDk~k~lsLllh~aDIshPaK~w~lH~rWT~~llEEFfr 390 (554)
T KOG3688|consen 316 WRELRNLVIEMVLATDMSQHFQQIKTMKERLQQPE-----GIDKLKALSLLLHAADISHPAKPWGLHHRWTMALLEEFFR 390 (554)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhChh-----hhhhHHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987543 2578899999999999999999999999999999999999
Q ss_pred chhHHHh-hcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhC
Q psy8796 320 QGDLEKL-QLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF 367 (536)
Q Consensus 320 QGD~Ek~-~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~ 367 (536)
|||+|+. ||+.. |+|||.. ..+|++|+|||+|||.|.|.++.++.
T Consensus 391 QGD~EaelGLPfS--PlcDR~s-t~VAqsQigFIdfIVePt~tv~~d~~ 436 (554)
T KOG3688|consen 391 QGDKEAELGLPFS--PLCDRKS-TMVAQSQIGFIDFIVEPTFTVLTDMT 436 (554)
T ss_pred ccchHhhcCCCCC--cccCCcc-hhhhhhhccceeeeecchHHHHHHHH
Confidence 9999983 33333 5899984 68999999999999999999998864
No 4
>KOG1229|consensus
Probab=100.00 E-value=1e-57 Score=470.01 Aligned_cols=298 Identities=26% Similarity=0.486 Sum_probs=267.5
Q ss_pred ccceeeecCCCCch----hhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCC-CCCCchhhHHHHHHHHHHHHhh
Q psy8796 88 LYSFTFIDFDLSDM----DTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKT 162 (536)
Q Consensus 88 l~s~~F~~~~l~~~----el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~-~pYHN~~HA~dV~Q~~~~lL~~ 162 (536)
-..|+|++|+|... -+..+++.+|.++|+++-++++...|.+|++.|+.+|+. |.|||..||+||+|++.++|..
T Consensus 443 de~WdFdIfeLEais~~~~L~~lGlKVFeRfgVCdfL~CSd~~L~aWf~~IEA~YHa~NaYHNaTHAADVLhATaFFL~k 522 (775)
T KOG1229|consen 443 DECWDFDIFELEAISDHHALSQLGLKVFERFGVCDFLGCSDDLLHAWFLSIEAHYHAGNAYHNATHAADVLHATAFFLDK 522 (775)
T ss_pred ccccccceeeeeeccccchHHHHhHHHHHHhcccccccCcHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHhcCC
Confidence 35799999998654 378889999999999999999999999999999999995 9999999999999999999998
Q ss_pred chhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHH-Hhc-CCCccccCCCHHH
Q psy8796 163 GKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMI-LNS-DGNNIFQALSPHD 239 (536)
Q Consensus 163 ~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~i-L~~-~~~nif~~l~~~~ 239 (536)
..+...++.++..|.|+||..||+||||.+|+|++++...||+|||+ +||||||.+++|++ |+. ..||||.+++.++
T Consensus 523 erV~g~ldeld~VAALiAAaVHDlDHPGR~NafLcNagqeLAiLYNDnaiLEnHH~ALAFQLTlkdn~ncNIFknidRe~ 602 (775)
T KOG1229|consen 523 ERVAGHLDELDAVAALIAAAVHDLDHPGRGNAFLCNAGQELAILYNDNAILENHHIALAFQLTLKDNANCNIFKNIDREE 602 (775)
T ss_pred chhhcccchHHHHHHHHHHHHhccCCCCCCceeEecCCcceeEEeccchHhhhhhhhheeeeeeccCcccchhhccCHHH
Confidence 88888999999999999999999999999999999999999999997 99999999999986 333 4599999999999
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC---CC----------CCCcHHHHHHHHHHHHhhccccCCCCCHHHH
Q psy8796 240 YRIVMKLVENSILSTDLAMYFKKKNRFIQLVENG---EF----------DWQSEEKKQLLCGMMMTACDVGAIAKPWEVQ 306 (536)
Q Consensus 240 ~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~---~~----------d~~~~e~r~lll~lllkaADiSn~~Rp~~v~ 306 (536)
|.++|+-|++|+|||||++||+.+++|.+.++.. +. ..+-++...+++.||+|||||+||+|||+++
T Consensus 603 f~qlR~AiidMVLATdiskHFEhl~KF~ksinkpmaaeiegsDcecepagknf~eNqilI~~MliKCADiaNP~R~ldLC 682 (775)
T KOG1229|consen 603 FIQLRHAIIDMVLATDISKHFEHLAKFNKSINKPMAAEIEGSDCECEPAGKNFDENQILICDMLIKCADIANPARELDLC 682 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCccccccCCCCccceeHHHHHHHHhccCCccchhhHH
Confidence 9999999999999999999999999998865531 00 0112456778999999999999999999999
Q ss_pred HHHHHHHHHHhhhchhHHHhhcCCCCC--cCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy8796 307 HKMAKLVADEFFDQGDLEKLQLNTQPV--AMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHW 384 (536)
Q Consensus 307 ~kWa~~l~~EFf~QGD~Ek~~l~~~P~--~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~~~l~~N~~~W 384 (536)
.+|+.++.+|||.|.|.||.+ +.|+ +..||+ ++++|++|+|||++++.-+|.++.. |..+-.+++.+..|.++|
T Consensus 683 ieWAgRIsEEYFaQTdEEK~k--GLPV~M~VFDRN-TCniP~sQ~~FID~F~~d~F~a~da-FAhL~aLmdhLadNYehW 758 (775)
T KOG1229|consen 683 IEWAGRISEEYFAQTDEEKEK--GLPVTMEVFDRN-TCNIPISQCGFIDMFARDAFAAFDA-FAHLGALMDHLADNYEHW 758 (775)
T ss_pred HHHHhHHHHHHHHhhhHHHhc--CCceeeeeecCC-ccCCchhhhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhhhhh
Confidence 999999999999999999864 5566 468998 5899999999999999999999855 556778999999999999
Q ss_pred HHHHH
Q psy8796 385 QDLAE 389 (536)
Q Consensus 385 ~~l~e 389 (536)
+.+-+
T Consensus 759 Ktldd 763 (775)
T KOG1229|consen 759 KTLDD 763 (775)
T ss_pred eechh
Confidence 99854
No 5
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.30 E-value=2.1e-07 Score=81.22 Aligned_cols=142 Identities=23% Similarity=0.237 Sum_probs=92.5
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHH
Q psy8796 143 YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCV 221 (536)
Q Consensus 143 YHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~ 221 (536)
+|++.|+..|++.+..+...... +..+...+.+|||+||+|+++..+.| |.. ...+..|.....
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~~----~~~~~~~l~~aaLlHDig~~~~~~~~-----------~~~~~~~~~~h~~~g~ 65 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELGL----SEEDIELLRLAALLHDIGKPGTPDAI-----------TEEESELEKDHAIVGA 65 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhCc----CHHHHHHHHHHHHHHhcCCccCcccc-----------CHHHHHHHHhhHHHHH
Confidence 47899999999999888765432 57788999999999999999998877 332 567778888777
Q ss_pred HHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCC
Q psy8796 222 MILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301 (536)
Q Consensus 222 ~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~R 301 (536)
.+++.. .....+....+.|++++ ..|.+... ..................+++.||.-...+
T Consensus 66 ~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~AD~~~~~~ 126 (145)
T cd00077 66 EILREL-----------LLEEVIKLIDELILAVD-ASHHERLD-------GLGYPDGLKGEEITLEARIVKLADRLDALR 126 (145)
T ss_pred HHHHHh-----------hhcccccccHHHHHHHH-HHcccCCC-------CCCCCCCCCcccCCHHHHHHHHHHHHHHHh
Confidence 777543 11123333445555555 44433211 111111111223346677899999887776
Q ss_pred C--HHHHHHHHHHHHHHhh
Q psy8796 302 P--WEVQHKMAKLVADEFF 318 (536)
Q Consensus 302 p--~~v~~kWa~~l~~EFf 318 (536)
. +....+|.....++||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (145)
T cd00077 127 RDSREKRRRIAEEDLEELL 145 (145)
T ss_pred cCCCCccccCCHHHHHhhC
Confidence 6 6777777777666654
No 6
>KOG3689|consensus
Probab=97.86 E-value=2.5e-06 Score=96.13 Aligned_cols=63 Identities=51% Similarity=0.816 Sum_probs=56.1
Q ss_pred CCCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhh
Q psy8796 1 MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHA 65 (536)
Q Consensus 1 ~~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a 65 (536)
++|+||+..+|..|||+|+++||+||.+.. +|+||+|.+||.+|. .|++.|++++..++.+..
T Consensus 85 ~~~~~f~~~~d~~t~~~~~~~l~~pi~~~~-~~~~~~~~~~k~~~~-~~~~~~~~~~~~~l~~~~ 147 (707)
T KOG3689|consen 85 YEDSRFNSETDKLTGYKTKSILCMPIVNSR-EVVGVAQAINKSNGP-TFTERDESVFSAYLGFCS 147 (707)
T ss_pred ccccccccccccccCCCccceeeccccchh-HHHHHHHhhcccccc-ccccccHHHHHhhcCCce
Confidence 479999999999999999999999999988 999999999997776 999999998766555443
No 7
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=97.66 E-value=7e-05 Score=67.21 Aligned_cols=63 Identities=35% Similarity=0.594 Sum_probs=48.4
Q ss_pred CCCCCCccccccC--------------CceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 2 VDPRFNNEIDRRT--------------GYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 2 ~dprF~~~~D~~t--------------gy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
.||+|....+... .+..+|+||+||.. +|+++||+.+.++.++. .|+++|++++..+....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~-~g~~~G~l~l~~~~~~~-~~~~~d~~ll~~~a~~~a~ 152 (154)
T PF01590_consen 76 ADPRFAPQIAAQSALRALSSAERPFLAEYGVRSYLCVPIIS-GGRLIGVLSLYRTRPGR-PFTEEDLALLESFAQQLAI 152 (154)
T ss_dssp GSTTSSCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEE-TTEEEEEEEEEEESSSS-S--HHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCceeeEeeeec-ccCcEEEEEEEECCCCC-CcCHHHHHHHHHHHHHHHh
Confidence 4677776665543 67899999999885 78999999999999865 8999999987776555443
No 8
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.40 E-value=0.00026 Score=82.02 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=49.8
Q ss_pred CCCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 1 MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 1 ~~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
.+||||.. .+....+.++|+||+||.. +|+||||+++.|+..+ .|+++|+.++..++++.| .++++
T Consensus 91 ~~dprf~~-~~~~~~~~~~S~L~VPL~~-~geVIGVL~v~~~~~~--~Fs~~d~~lL~~LA~~aA-iAL~n 156 (748)
T PRK11061 91 QKHPSFKY-IPSVKEERFRAFLGVPIIY-RRQLLGVLVVQQRELR--QFDESEESFLVTLATQLA-AILSQ 156 (748)
T ss_pred ccCccccc-CccccCccceEEEEEEEee-CCEEEEEEEEeeCCCC--CCCHHHHHHHHHHHHHHH-HHHHH
Confidence 36899942 2333467899999999995 7899999999999876 699999997666555444 34444
No 9
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=97.23 E-value=0.00054 Score=60.96 Aligned_cols=53 Identities=34% Similarity=0.508 Sum_probs=39.6
Q ss_pred cccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 11 DRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 11 D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
...-+...+|++|+||.. +|+++||+.+.++..+ .|+++|.+++..++...+.
T Consensus 93 ~~~~~~~~~s~l~vPl~~-~~~~~Gvl~l~~~~~~--~f~~~~~~~l~~la~~~a~ 145 (148)
T PF13185_consen 93 ELARHPGIRSILCVPLRS-GGEVIGVLSLYSKEPN--AFSEEDLELLEALADQIAI 145 (148)
T ss_dssp HHHCCTT-SEEEEEEEEE-TTEEEEEEEEEESSTT-----HHHHHHHHHHHHHHHH
T ss_pred hhhccccCCEEEEEEEeE-CCEEEEEEEEeeCCCC--CcCHHHHHHHHHHHHHHHH
Confidence 445667789999999996 6799999999998764 7999999987776665554
No 10
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.20 E-value=0.00051 Score=76.54 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=49.1
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATA 67 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~ 67 (536)
.||+|..... ..++.++|+||+||. .+|+|+||+.+.|+.... .|+++|++++..++.+.|.+
T Consensus 93 ~d~~~~~~~~-~~~~~~~S~l~VPL~-~~g~viGvL~v~s~~~~~-~ft~~d~~lL~~lA~~ia~a 155 (534)
T TIGR01817 93 AEPLFLDRLS-LYDPGPVPFIGVPIK-ADSETIGVLAADRDFRSR-ERLEEEVRFLEMVANLIGQT 155 (534)
T ss_pred cCchhhhccc-cccCCcceEEEEEEc-CCCEEEEEEEEEeccccc-cccHHHHHHHHHHHHHHHHH
Confidence 5778854443 345668999999999 588999999999997765 79999999877666665554
No 11
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=96.71 E-value=0.0024 Score=55.38 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=39.0
Q ss_pred ccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 10 IDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 10 ~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
.+....-..++++|+||...+ +++||+.+ +...+. .|+++|++++..++.+.|.
T Consensus 72 ~~~~~~~~~~s~~~vPl~~~~-~~~Gvl~~-~~~~~~-~~~~~d~~~l~~~a~~~a~ 125 (129)
T PF13492_consen 72 IDERDFLGIRSLLVVPLRSRD-RVIGVLCL-DSREPE-EFSDEDLQLLESLANQLAI 125 (129)
T ss_dssp CCC-TTTTTCEEEEEEEEETT-EEEEEEEE-EECTTC-G-SHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEEEEEeECC-EEEEEEEE-EECCCC-CCCHHHHHHHHHHHHHHHH
Confidence 344444566999999999754 99999998 555555 7999999986665555554
No 12
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.98 E-value=0.009 Score=50.76 Aligned_cols=51 Identities=37% Similarity=0.537 Sum_probs=40.8
Q ss_pred CCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccc
Q psy8796 141 VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQT 197 (536)
Q Consensus 141 ~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli 197 (536)
++++.+.|+..|++.+..+....+. .+...+.+|||+||+|++...+.+..
T Consensus 1 ~~~~~~~H~~~v~~~~~~l~~~~~~------~~~~~~~~a~LlHDig~~~~~~~~~~ 51 (124)
T smart00471 1 SDYHVFEHSLRVAQLAAALAEELGL------LDIELLLLAALLHDIGKPGTPDSFLV 51 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCh------HHHHHHHHHHHHHcccCccCCHHHhc
Confidence 3678999999999999888765432 45567899999999999988775543
No 13
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=95.62 E-value=0.032 Score=47.20 Aligned_cols=50 Identities=32% Similarity=0.496 Sum_probs=39.2
Q ss_pred Cce-eeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 15 GYT-TNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 15 gy~-TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
++. .++++|+||.. +|+++|++.+..+.... .|+++|..++..+....+.
T Consensus 87 ~~~~~~s~~~~Pl~~-~~~~~G~l~~~~~~~~~-~~~~~~~~~l~~~~~~i~~ 137 (149)
T smart00065 87 RYQGVRSFLAVPLVA-DGELVGVLALHNKDSPR-PFTEEDEELLQALANQLAI 137 (149)
T ss_pred ceeceeeEEEeeeee-cCEEEEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 444 89999999997 78999999999984444 7999999876665544443
No 14
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.57 E-value=0.0091 Score=68.69 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCCCCCcccccc---CCcee-eeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 2 VDPRFNNEIDRR---TGYTT-NSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 2 ~dprF~~~~D~~---tgy~T-rSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.+++|...+++. ..|.. ++.+.|||.. .|+|+||+.+.+|. +. +||++|+.++.. ++.+++.++|++
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~lgvPl~~-~~~v~G~l~l~~~~-~~-~Ft~~d~~ll~~-la~~a~~aie~~ 164 (686)
T PRK15429 94 SYEEFCETWPQLAAGGLYPKFGHYCLMPLAA-EGHIFGGCEFIRYD-DR-PWSEKEFNRLQT-FTQIVSVVTEQI 164 (686)
T ss_pred chHHhhhccHHHhhcccccCccceEEeceee-CCeeEEEEEEEEcC-CC-CCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 345666655443 24443 5667799996 78999999999998 44 899999997544 556666666654
No 15
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.76 E-value=0.047 Score=62.88 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=42.2
Q ss_pred CCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 14 TGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 14 tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
.+..++|++|+||.. +|+|+||+.+.++..+ .|+++|.+++..++++.|. ++++
T Consensus 290 ~~~~~~s~l~vPL~~-~~~v~GvL~l~~~~~~--~F~~~dl~lL~~iA~~~A~-Aie~ 343 (686)
T PRK15429 290 WGNQIQTLCLLPLMS-GDTMLGVLKLAQCEEK--VFTTTNLKLLRQIAERVAI-AVDN 343 (686)
T ss_pred ccccceEEEEEeEEE-CCEEEEEEEEeeCCCC--cCCHHHHHHHHHHHHHHHH-HHHH
Confidence 355689999999995 7799999999987643 7999999987766555554 4444
No 16
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.36 E-value=0.083 Score=58.81 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=38.0
Q ss_pred ceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 16 YTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 16 y~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
-..+|+||+||.. +|+++||+.+.....+ .|+++|+.++..+.+..+.
T Consensus 107 ~gi~S~l~vPL~~-~~~~~GvL~l~~~~~~--~f~~~~~~~l~~~a~~~a~ 154 (509)
T PRK05022 107 LPVHDCMGLPLFV-DGRLIGALTLDALDPG--QFDAFSDEELRALAALAAA 154 (509)
T ss_pred CCcceEEEEEEEE-CCEEEEEEEEeeCCCC--cCCHHHHHHHHHHHHHHHH
Confidence 3568999999996 7899999999998655 6999999976555444443
No 17
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=94.07 E-value=0.052 Score=47.84 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=40.1
Q ss_pred eeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcc
Q psy8796 18 TNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATA 67 (536)
Q Consensus 18 TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~ 67 (536)
.++.||+||.. +|+++|++.+.+..... .|+++++.++..+....+.+
T Consensus 114 i~~~l~vPl~~-~~~~~G~l~~~~~~~~~-~~~~~e~~ll~~la~~~a~a 161 (175)
T COG2203 114 IRSYLGVPLIA-QGELLGLLCVHDSEPRR-QWSEEELELLEELAEQVAIA 161 (175)
T ss_pred HHHheeeeeeE-CCEeeEEeeeeccCCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 69999999996 66899999999998764 69999999877766665553
No 18
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=93.49 E-value=0.083 Score=45.35 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCc
Q psy8796 146 WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNN 193 (536)
Q Consensus 146 ~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN 193 (536)
+.|...|+..+..+....+. +.+...+.+|||+||+|+.....
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~-----~~~~~~l~~aaLlHDiGk~~~~~ 44 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGL-----EEDRELLRIAALLHDIGKIPTPD 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHTTTTHHSTHH
T ss_pred hhHHHHHHHHHHHHHHHcCC-----chhHHHHHHHHHHHhcCCCCCch
Confidence 57999999999888775443 88999999999999999987654
No 19
>PRK12705 hypothetical protein; Provisional
Probab=90.72 E-value=0.044 Score=60.93 Aligned_cols=137 Identities=16% Similarity=0.085 Sum_probs=82.9
Q ss_pred CCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccccchhcccCCcc
Q psy8796 4 PRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSA 83 (536)
Q Consensus 4 prF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~~kLl~~~ip~~ 83 (536)
++|++.-++.+++.++++++.|..++ ++|.+|++.+|+ .|+..+.+...+.+...+.
T Consensus 244 s~fdp~rreia~~~l~~Li~dgri~p-~rIeevv~~~~~-----~~~~~i~~~ge~a~~~lgi----------------- 300 (508)
T PRK12705 244 SSFNPIRREIARLTLEKLLADGRIHP-ARIEEYVQKANE-----EFKQKIYEIGEEVLEELGI----------------- 300 (508)
T ss_pred cccCccchHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcc-----------------
Confidence 67888888888888888888888765 567777777776 2555444432221111111
Q ss_pred ccccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCC-chhhHHHHHHHHHHHHhh
Q psy8796 84 QVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYH-NWRHALNVAQTMFAMLKT 162 (536)
Q Consensus 84 ~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYH-N~~HA~dV~Q~~~~lL~~ 162 (536)
. +++ ..+..++..+ .|+..+-. -|.|+..|++.+..|...
T Consensus 301 ---------------------------------~---~~~-~~li~~Lg~L--~~R~sygqnvl~HSl~VA~lA~~LA~~ 341 (508)
T PRK12705 301 ---------------------------------F---DLK-PGLVRLLGRL--YFRTSYGQNVLSHSLEVAHLAGIIAAE 341 (508)
T ss_pred ---------------------------------c---ccc-HHHHHHHHHH--hhcccCCchHHHHHHHHHHHHHHHHHH
Confidence 0 011 2223333332 24432222 489999999999999876
Q ss_pred chhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHHHHHHhcC
Q psy8796 163 GKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSD 227 (536)
Q Consensus 163 ~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~~~iL~~~ 227 (536)
.+ +++.. +..|||.||+|..-. + -.+.-|......++.+-
T Consensus 342 lG----ld~d~---a~~AGLLHDIGK~ie---------------~---e~~~~H~~iGaeLlkk~ 381 (508)
T PRK12705 342 IG----LDPAL---AKRAGLLHDIGKSID---------------R---ESDGNHVEIGAELARKF 381 (508)
T ss_pred cC----cCHHH---HHHHHHHHHcCCcch---------------h---hhcccHHHHHHHHHHhc
Confidence 54 34433 246999999998521 0 02346888888888653
No 20
>PRK05092 PII uridylyl-transferase; Provisional
Probab=90.39 E-value=4 Score=49.03 Aligned_cols=144 Identities=22% Similarity=0.297 Sum_probs=78.6
Q ss_pred CCCCch---hhHHHHHHHHHHHHhhchh------hccCCHH-HHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCC
Q psy8796 141 VKYHNW---RHALNVAQTMFAMLKTGKM------ERFMSDL-EILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTS 210 (536)
Q Consensus 141 ~pYHN~---~HA~dV~Q~~~~lL~~~~l------~~~ls~l-E~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~S 210 (536)
..||.. .|..-|+..+-.+.....- ...+..+ ....|.+|||+||+|-+...
T Consensus 487 d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGKg~~~------------------ 548 (931)
T PRK05092 487 NMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAKGRPE------------------ 548 (931)
T ss_pred ccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhcCCCC------------------
Confidence 566654 7877777766555421100 0011111 13468899999999974211
Q ss_pred ccccchhHH----HHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHH-----HHHHHHHHHHHhcCCCCCCcHH
Q psy8796 211 TMEHHHFDQ----CVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMY-----FKKKNRFIQLVENGEFDWQSEE 281 (536)
Q Consensus 211 VLEnhH~a~----~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~H-----f~~~~~f~~~~~~~~~d~~~~e 281 (536)
-|... +-.++.+- +++.++.+.+..+|..-.+--+++.- -+.+.+|-..+. +++
T Consensus 549 ----dHs~~Ga~~a~~~~~rl------~l~~~~~~~v~~LV~~Hl~ms~~a~rrDi~d~~~i~~fa~~v~-------~~~ 611 (931)
T PRK05092 549 ----DHSIAGARIARRLCPRL------GLSPAETETVAWLVEHHLLMSDTAQKRDLSDPKTIEDFADAVQ-------SPE 611 (931)
T ss_pred ----CHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHhHHhHHHHcccCCCHHHHHHHHHHhC-------CHh
Confidence 13322 33444443 36778877777777654322211111 123444443332 122
Q ss_pred HHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhH
Q psy8796 282 KKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDL 323 (536)
Q Consensus 282 ~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~ 323 (536)
. +-+=++++.||+..+. | ..-..|...+..|.|.....
T Consensus 612 ~--L~~L~~Lt~ADi~a~~-~-~~wn~wk~~Ll~~Ly~~t~~ 649 (931)
T PRK05092 612 R--LKLLLILTVADIRAVG-P-GVWNGWKAQLLRTLYYETEE 649 (931)
T ss_pred H--hhHHHHHHHHhhcccC-c-chHHHHHHHHHHHHHHHHHH
Confidence 2 2222578999997665 2 55667999999999987543
No 21
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=89.75 E-value=0.58 Score=44.47 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=35.9
Q ss_pred eeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHh
Q psy8796 17 TTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSY 63 (536)
Q Consensus 17 ~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~ 63 (536)
.++|=||+||.. +|++|||+-+=--..+ .|+++|++.+..+...
T Consensus 112 as~SEIVvPi~~-~g~~iGvlDiDS~~~~--~Fd~~D~~~Le~~~~~ 155 (163)
T COG1956 112 ASNSEIVVPIFK-DGKLIGVLDIDSPTPG--RFDEEDEAGLEKLAAL 155 (163)
T ss_pred ccCceEEEEEEE-CCEEEEEEecCCCCcc--cCCHHHHHHHHHHHHH
Confidence 468999999996 8999999998776666 6999999887665543
No 22
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=89.06 E-value=0.84 Score=49.25 Aligned_cols=102 Identities=17% Similarity=0.028 Sum_probs=57.7
Q ss_pred CCCc-hhhHHHHHHHHHHHHhhchhhc----cCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccch
Q psy8796 142 KYHN-WRHALNVAQTMFAMLKTGKMER----FMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHH 216 (536)
Q Consensus 142 pYHN-~~HA~dV~Q~~~~lL~~~~l~~----~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH 216 (536)
-||| +.|+..|+|..-.+.+.-.... .......-.+..|||+||+|||-+.=..... |...+..--.-=.|
T Consensus 35 ~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiGhpPfgH~gE~~----l~~~~~~~g~~f~~ 110 (381)
T TIGR01353 35 FVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIGNPPFGHAGERA----LNDWMREYGPGFEG 110 (381)
T ss_pred CCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCCCCCCcccHHHH----HHHHHHhcCCCCCh
Confidence 4676 4899999999988765432200 0011133456689999999999887655432 22222110001247
Q ss_pred hHHHHHHHhc-CCCc-cccC--CCHHHHHHHHHHH
Q psy8796 217 FDQCVMILNS-DGNN-IFQA--LSPHDYRIVMKLV 247 (536)
Q Consensus 217 ~a~~~~iL~~-~~~n-if~~--l~~~~~~~~r~~I 247 (536)
-+++++||.+ +..+ .+.+ |+-+....+.|.-
T Consensus 111 n~q~~ri~~~Le~~~~~~~GLNLT~~tL~~i~KYp 145 (381)
T TIGR01353 111 NAQTFRILTTLEKRRRAKGGLNLTWRTLAGILKYP 145 (381)
T ss_pred HHHHHHHHHHHhhccCCcCCcCCCHHHHHHHHcCC
Confidence 8889998876 2221 1333 4555555554443
No 23
>PRK10119 putative hydrolase; Provisional
Probab=88.00 E-value=0.87 Score=45.87 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=36.8
Q ss_pred HHHcCC-CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCC
Q psy8796 134 VKKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188 (536)
Q Consensus 134 V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdH 188 (536)
|++.+. ..++|+|.|..-|...+-.|....+ .+...+.+||+.||++.
T Consensus 14 v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~-------~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 14 LKNHHQHQDAAHDICHFRRVWATAQKLAADDD-------VDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHhhcCCCccChHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHhhcch
Confidence 344444 3899999999999999988865432 35667889999999964
No 24
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=87.96 E-value=5.7 Score=47.21 Aligned_cols=143 Identities=20% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCCCch---hhHHHHHHHHHHHHhhch---------hhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhc
Q psy8796 140 PVKYHNW---RHALNVAQTMFAMLKTGK---------MERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY 207 (536)
Q Consensus 140 ~~pYHN~---~HA~dV~Q~~~~lL~~~~---------l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilY 207 (536)
...||-. .|...|++.+..+..... +...++ ...++.+|||+||+|.+..
T Consensus 421 ~~~~H~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~lAaLlHDiGKg~~---------------- 482 (850)
T TIGR01693 421 FDLFHVYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIE--DPELLYLAALLHDIGKGRG---------------- 482 (850)
T ss_pred cCceeecchhHHHHHHHHHHHHHhccccccccccHHHHHhccC--CHHHHHHHHHHHHHhcCCC----------------
Confidence 4567764 688888887766543110 111122 2456899999999998411
Q ss_pred CCCccccchhHH----HHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHhcCCCCC
Q psy8796 208 TTSTMEHHHFDQ----CVMILNSDGNNIFQALSPHDYRIVMKLVENSILST------DLAMYFKKKNRFIQLVENGEFDW 277 (536)
Q Consensus 208 n~SVLEnhH~a~----~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT------DMa~Hf~~~~~f~~~~~~~~~d~ 277 (536)
.-|... +-.++.+- +++.++.+.+..+|..-.+-. |+. --+.+.+|-..+.
T Consensus 483 ------~~H~~~Ga~~a~~~~~rl------~l~~~~~~~v~~LV~~Hl~~~~~aqr~d~~-d~~~i~~f~~~v~------ 543 (850)
T TIGR01693 483 ------GDHSVLGAEDARDVCPRL------GLDRPDTELVAWLVRNHLLMSITAQRRDLN-DPKTVFAFAEAVG------ 543 (850)
T ss_pred ------CCHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHHhHHHhcCCCC-CHHHHHHHHHHhC------
Confidence 113333 23444442 467777777777776443221 211 0123344433331
Q ss_pred CcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHH
Q psy8796 278 QSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLE 324 (536)
Q Consensus 278 ~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~E 324 (536)
+++. +-.=++++.||+.... | ..-..|...+..|.|..-..-
T Consensus 544 -~~~~--L~~L~~Lt~AD~~a~~-~-~~w~~wk~~Ll~~Ly~~t~~~ 585 (850)
T TIGR01693 544 -DPER--LEYLLALTVADIRATG-P-GVWNSWKASLLRDLYNRTEQV 585 (850)
T ss_pred -CHHH--HHHHHHHHHHhhhccC-c-chhHHHHHHHHHHHHHHHHHH
Confidence 1221 1222468999986544 2 355678888999998875444
No 25
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=87.88 E-value=0.6 Score=51.01 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHhh--chhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHHHHH
Q psy8796 146 WRHALNVAQTMFAMLKT--GKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMI 223 (536)
Q Consensus 146 ~~HA~dV~Q~~~~lL~~--~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~~~i 223 (536)
|.|..=|.+.+-.++.. .......++.+...+.+|||.||+||+-++=.|..-....+- ..|-+.+-.+
T Consensus 53 FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIGHgPFSH~fE~~~~~~~~---------~~He~~~~~i 123 (421)
T COG1078 53 FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIGHGPFSHTFEYVLDKNLG---------FYHEDVTQRI 123 (421)
T ss_pred cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccCCCccccchHHHhccccc---------ccHHHHHHHH
Confidence 57888888888777653 222345677888899999999999999998776643221111 1476666666
Q ss_pred Hhc
Q psy8796 224 LNS 226 (536)
Q Consensus 224 L~~ 226 (536)
...
T Consensus 124 i~~ 126 (421)
T COG1078 124 IKN 126 (421)
T ss_pred hcC
Confidence 653
No 26
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=87.39 E-value=0.52 Score=49.98 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHHHHHHh
Q psy8796 146 WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILN 225 (536)
Q Consensus 146 ~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~~~iL~ 225 (536)
+.|..-|+|..-.+.+..++ +. + .+-.|||+||+|||-+.=.+...-+ ..+.+ ..--.|-++.++|+.
T Consensus 64 ~~Hsl~V~~iar~~~~~l~~----~~-~--l~~aaaL~HDiGh~PfgH~gE~~l~----~~~~~-~~~f~hn~~s~ri~~ 131 (336)
T PRK01286 64 LTHTLEVAQIARTIARALRL----NE-D--LTEAIALGHDLGHTPFGHAGEDALN----ELMKE-YGGFEHNEQSLRVVD 131 (336)
T ss_pred HHHHHHHHHHHHHHHHHhCC----CH-H--HHHHHHHHhcCCCCCCcchHHHHHH----Hhccc-cCCCcHHHHHHHHHH
Confidence 68999999999888775432 21 2 2345899999999988776643211 11111 112467788888775
Q ss_pred c
Q psy8796 226 S 226 (536)
Q Consensus 226 ~ 226 (536)
.
T Consensus 132 ~ 132 (336)
T PRK01286 132 K 132 (336)
T ss_pred H
Confidence 5
No 27
>PRK03059 PII uridylyl-transferase; Provisional
Probab=87.28 E-value=7.1 Score=46.56 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=79.2
Q ss_pred CCCCCc---hhhHHHHHHHHHHHHhhch------hhccCCHH-HHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC
Q psy8796 140 PVKYHN---WRHALNVAQTMFAMLKTGK------MERFMSDL-EILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT 209 (536)
Q Consensus 140 ~~pYHN---~~HA~dV~Q~~~~lL~~~~------l~~~ls~l-E~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~ 209 (536)
...||- +.|..-|++.+..+..... ..+.+..+ ....|.+|||+||+|-|...
T Consensus 433 ~~~~H~ytVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGKg~~~----------------- 495 (856)
T PRK03059 433 HDLFHVYTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAKGRGG----------------- 495 (856)
T ss_pred ccccccCcHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhccCCCC-----------------
Confidence 356664 5688888777655432110 00111111 24568899999999975221
Q ss_pred Cccccchh----HHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHhcCCCCCCc
Q psy8796 210 STMEHHHF----DQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILST------DLAMYFKKKNRFIQLVENGEFDWQS 279 (536)
Q Consensus 210 SVLEnhH~----a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT------DMa~Hf~~~~~f~~~~~~~~~d~~~ 279 (536)
-|. ..+-.++.+-+ ++.++.+.+..+|..-.+-- |+.. -+.+.+|.+.+. +
T Consensus 496 -----~Hs~~GA~~A~~il~rl~------l~~~~~~~V~~LV~~Hl~~~~~aqrrDi~d-~~~i~~fa~~v~-------~ 556 (856)
T PRK03059 496 -----DHSTLGAVDARRFCRQHG------LAREDAELVVWLVEHHLTMSQVAQKQDLSD-PEVIARFAELVG-------D 556 (856)
T ss_pred -----CchHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhchHhHHHhhcCCCC-HHHHHHHHHHhC-------C
Confidence 132 23345555543 56777777777776543211 2211 233444444432 1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchh
Q psy8796 280 EEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGD 322 (536)
Q Consensus 280 ~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD 322 (536)
++. +-.=++++.||+.... -..-..|...+..|.|....
T Consensus 557 ~~~--L~~L~lLt~AD~~a~~--~~~wn~Wk~~LL~~Ly~~t~ 595 (856)
T PRK03059 557 ERR--LTALYLLTVADIRGTS--PKVWNAWKGKLLEDLYRATL 595 (856)
T ss_pred HHH--HHHHHhHHHHhhhccC--cchhhHHHHHHHHHHHHHHH
Confidence 211 2233579999995543 25667899999999998753
No 28
>PRK13558 bacterio-opsin activator; Provisional
Probab=87.08 E-value=1.2 Score=50.65 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=41.6
Q ss_pred eeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcc--cCccccchhcc
Q psy8796 20 SILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATA--SGEDTRKLIKD 78 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~--~~e~~~kLl~~ 78 (536)
|.+|+||. .+|+++||+.+....++ .|+++|..++.++....+.+ +.+..+.|..+
T Consensus 390 s~~~vPL~-~~g~~~GvL~v~~~~~~--~f~~~e~~ll~~la~~ia~aI~~~~~~~~l~~~ 447 (665)
T PRK13558 390 AVAAVPLV-YRETTYGVLVVYTAEPD--EIDDRERVVLEALGRAVGAAINALESRRTLTTD 447 (665)
T ss_pred eEEEEeEE-ECCEEEEEEEEeeCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999 48899999999987555 69999999888776654443 23444444443
No 29
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=87.01 E-value=8.3 Score=46.20 Aligned_cols=143 Identities=21% Similarity=0.259 Sum_probs=81.7
Q ss_pred CCCCc---hhhHHHHHHHHHHHHhhch------hhccCCHHHH-HHHHHHhhccCCCCCCCCccccccccchhhhhcCCC
Q psy8796 141 VKYHN---WRHALNVAQTMFAMLKTGK------MERFMSDLEI-LGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTS 210 (536)
Q Consensus 141 ~pYHN---~~HA~dV~Q~~~~lL~~~~------l~~~ls~lE~-lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~S 210 (536)
.+||- +.|..-|++.+..+..... ....+..++. ..|.+|||+||+|=+...
T Consensus 454 d~yH~ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg~~~------------------ 515 (895)
T PRK00275 454 DLFHIYTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKGRGG------------------ 515 (895)
T ss_pred cccccCcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcCCCC------------------
Confidence 56664 5688888887766543210 0011111222 367899999999875321
Q ss_pred ccccchhHH----HHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHhcCCCCCCcH
Q psy8796 211 TMEHHHFDQ----CVMILNSDGNNIFQALSPHDYRIVMKLVENSILST------DLAMYFKKKNRFIQLVENGEFDWQSE 280 (536)
Q Consensus 211 VLEnhH~a~----~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT------DMa~Hf~~~~~f~~~~~~~~~d~~~~ 280 (536)
-|... +-.++.+- +++.++.+.+..+|..-.+-- |+.. -+.+.+|.+.+.+ +
T Consensus 516 ----~Hs~~Ga~~a~~i~~rl------~l~~~~~~~v~~LV~~HL~ms~~aqrrDi~d-~~~i~~fa~~v~~-------~ 577 (895)
T PRK00275 516 ----DHSELGAVDAEAFCQRH------QLPAWDTRLVVWLVENHLLMSTTAQRKDLSD-PQVIHDFALKVGD-------Q 577 (895)
T ss_pred ----CHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHHhHHHhccCCCC-HHHHHHHHHHhCC-------H
Confidence 14333 33455543 367788887777776543211 3221 2355555554421 2
Q ss_pred HHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhH
Q psy8796 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDL 323 (536)
Q Consensus 281 e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~ 323 (536)
+. +-+=++++.||+..+. | .+-..|...+..|.|.....
T Consensus 578 ~~--L~~L~lLT~ADi~at~-~-~~wn~wk~~Ll~~Ly~~t~~ 616 (895)
T PRK00275 578 TH--LDYLYVLTVADINATN-P-TLWNSWRASLLRQLYTETKR 616 (895)
T ss_pred HH--HHHHHHHHHHHhhccC-c-chhHHHHHHHHHHHHHHHHH
Confidence 11 2223579999996644 3 66678999999999987543
No 30
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=86.84 E-value=1.5 Score=42.47 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=36.5
Q ss_pred eeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhh
Q psy8796 18 TNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHA 65 (536)
Q Consensus 18 TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a 65 (536)
-.+.+++||.. +|+++|++.|. +++....|++.+.+++..++.+.+
T Consensus 131 l~s~ii~Pl~~-~g~viGtLkly-~k~~~~~~~~~e~~la~glA~lLS 176 (180)
T TIGR02851 131 YTSQVIAPIIA-EGDPIGAVIIF-SKEPGEKLGEVEQKAAETAAAFLG 176 (180)
T ss_pred cceEEEEEEEE-CCeEEEEEEEE-ECCccCCCCHHHHHHHHHHHHHHH
Confidence 47999999995 77999999999 665323799999998777655543
No 31
>KOG2681|consensus
Probab=86.49 E-value=1.3 Score=48.19 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=41.1
Q ss_pred CCCCc-hhhHHHHHHHHHHH---Hhhc-hhhccCCHHHHHHHHHHhhccCCCCCCCCcccccc
Q psy8796 141 VKYHN-WRHALNVAQTMFAM---LKTG-KMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTK 198 (536)
Q Consensus 141 ~pYHN-~~HA~dV~Q~~~~l---L~~~-~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~ 198 (536)
..=|+ |.|..-|--....+ |... ..+-.+++.+..|.-|||||||+||--++-.|.-.
T Consensus 69 ~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~El~It~~d~~~vqvA~LLHDIGHGPfSHmFe~~ 131 (498)
T KOG2681|consen 69 GANHSRFEHSLGTYTLAGILVNALNKNQCPELCITEVDLQAVQVAALLHDIGHGPFSHLFEGE 131 (498)
T ss_pred CCccchhhhhhhhHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhhe
Confidence 34444 46666554444444 3333 25667999999999999999999999888887654
No 32
>PRK05007 PII uridylyl-transferase; Provisional
Probab=86.20 E-value=14 Score=44.38 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=82.1
Q ss_pred CCCCCch---hhHHHHHHHHHHHHhhchh---------hccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhc
Q psy8796 140 PVKYHNW---RHALNVAQTMFAMLKTGKM---------ERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY 207 (536)
Q Consensus 140 ~~pYHN~---~HA~dV~Q~~~~lL~~~~l---------~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilY 207 (536)
..+||-+ .|..-|+..+..+...... ...+. ....|.+|||+||+|=+...
T Consensus 454 ~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~lL~lAaLlHDIGKg~~~--------------- 516 (884)
T PRK05007 454 FDLFHAYTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLP--KKELLLLAALFHDIAKGRGG--------------- 516 (884)
T ss_pred cCccccCcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcC--ChhHHHHHHHHHhhcCCCCC---------------
Confidence 4688877 8999998887766542110 00111 23468899999999875211
Q ss_pred CCCccccchhHH----HHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHhcCCCCC
Q psy8796 208 TTSTMEHHHFDQ----CVMILNSDGNNIFQALSPHDYRIVMKLVENSILST------DLAMYFKKKNRFIQLVENGEFDW 277 (536)
Q Consensus 208 n~SVLEnhH~a~----~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT------DMa~Hf~~~~~f~~~~~~~~~d~ 277 (536)
.|... +-.++.+- ++++++.+.+..+|..-.+-- |+..- +.+.+|-+.+.
T Consensus 517 -------dHs~~Ga~~a~~il~rl------~l~~~~~~~v~~LV~~Hl~~~~~a~rrdi~d~-~~i~~~a~~v~------ 576 (884)
T PRK05007 517 -------DHSILGAQDALEFAELH------GLNSRETQLVAWLVRNHLLMSVTAQRRDIQDP-DVIKQFAEEVQ------ 576 (884)
T ss_pred -------ChHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHhhHHHhccCCCCH-HHHHHHHHHhC------
Confidence 24433 33455443 367777777777776543222 22111 33444444432
Q ss_pred CcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhH
Q psy8796 278 QSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDL 323 (536)
Q Consensus 278 ~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~ 323 (536)
+.+ + +-.=++|+.||+....- .+-..|...+..|.|.....
T Consensus 577 -~~~-~-L~~L~~Lt~AD~~a~~p--~~wn~Wk~~LL~eLy~~t~~ 617 (884)
T PRK05007 577 -DEN-R-LRYLVCLTVADICATNE--TLWNSWKQSLLRELYFATEK 617 (884)
T ss_pred -CHH-H-HHHHHHHHHhhhcccCc--chhhHHHHHHHHHHHHHHHH
Confidence 122 2 22225799999955432 34557999999999987544
No 33
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=85.13 E-value=13 Score=44.47 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=78.0
Q ss_pred CCCCc---hhhHHHHHHHHHHHHhhchhh------ccCCH-HHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCC
Q psy8796 141 VKYHN---WRHALNVAQTMFAMLKTGKME------RFMSD-LEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTS 210 (536)
Q Consensus 141 ~pYHN---~~HA~dV~Q~~~~lL~~~~l~------~~ls~-lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~S 210 (536)
.+||- +.|...|++.+..+.....-. +.+.. .....|.+|||+||+|-+ ...
T Consensus 430 d~yH~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGKG-~~~----------------- 491 (854)
T PRK01759 430 DLFHIYTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAKG-RGG----------------- 491 (854)
T ss_pred cccccCcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC-----------------
Confidence 45553 467777777765554321000 00011 134568899999999973 211
Q ss_pred ccccchhHH----HHHHHhcCCCccccCCCHHHHHHHHHHHHH-HHHh-----cchhHHHHHHHHHHHHHhcCCCCCCcH
Q psy8796 211 TMEHHHFDQ----CVMILNSDGNNIFQALSPHDYRIVMKLVEN-SILS-----TDLAMYFKKKNRFIQLVENGEFDWQSE 280 (536)
Q Consensus 211 VLEnhH~a~----~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~-~ILA-----TDMa~Hf~~~~~f~~~~~~~~~d~~~~ 280 (536)
-|... +-.++.+- +++.++.+.+..+|.. ++++ -|++. -+.+.+|-..+. ++
T Consensus 492 ----dHs~~Ga~~a~~i~~rl------~l~~~~~~~v~~LV~~Hl~ms~~Aqr~Di~d-p~~i~~fa~~vg-------~~ 553 (854)
T PRK01759 492 ----DHAELGAVDMRQFAQQH------GFDQREIETMAWLVQQHLLMSVTAQRRDIHD-PEVVMNFAEEVQ-------NQ 553 (854)
T ss_pred ----ChhHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHhhHHHHHHhccCCCC-HHHHHHHHHHhC-------CH
Confidence 13322 33455443 3577777777777763 3333 22211 134444444432 11
Q ss_pred HHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhH
Q psy8796 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDL 323 (536)
Q Consensus 281 e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~ 323 (536)
++ +-+=++++.||+..+.- .+-..|...+..|.|.....
T Consensus 554 ~~--L~~L~lLt~ADi~at~~--~~wn~Wk~~LL~eLY~~t~~ 592 (854)
T PRK01759 554 VR--LDYLTCLTVADICATNE--TLWNSWKRSLFATLYQFTNQ 592 (854)
T ss_pred hh--hHHHHHHHHhHhhccCc--chhhHHHHHHHHHHHHHHHH
Confidence 11 22335799999965532 44557999999999987543
No 34
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=84.29 E-value=2.8 Score=41.85 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=32.8
Q ss_pred CCch-----hhHHHHHHHHHHHHhhchhhccCCHHH--------HHHHHHHhhccCCCCC
Q psy8796 143 YHNW-----RHALNVAQTMFAMLKTGKMERFMSDLE--------ILGLLVACLCHDLDHR 189 (536)
Q Consensus 143 YHN~-----~HA~dV~Q~~~~lL~~~~l~~~ls~lE--------~lAllvAALcHDvdHp 189 (536)
.|+. .|...|+.++..+...-.+..-.++.+ ..++++||||||+|-+
T Consensus 61 Hha~~GGLl~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 61 HHAYLGGLLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKL 120 (218)
T ss_pred CccccchHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 5665 899999998888765432222223332 3689999999999887
No 35
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=83.56 E-value=1.2 Score=48.35 Aligned_cols=73 Identities=25% Similarity=0.216 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHHHHHHhc
Q psy8796 147 RHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNS 226 (536)
Q Consensus 147 ~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~~~iL~~ 226 (536)
+|...|+|..-.+...-++... .|.+-++ =.|||+||+|||-+.=.=...-+ ....-|+. =-|-|++|+||.+
T Consensus 71 THSLEVAQIgRsia~~l~~~~~-~~~~dL~-E~a~LaHDiGhPPFGH~GE~ALn-~~m~~~gG----FEGNAQ~fRIlT~ 143 (412)
T COG0232 71 THSLEVAQIGRSIARELGLDLD-LPFEDLV-ETACLAHDIGHPPFGHAGEDALN-EVMREYGG----FEGNAQTFRILTK 143 (412)
T ss_pred hhhHHHHHHHHHHHHHhccccC-CChHHHH-HHHHHHhcCCCCCCCccHHHHHH-HHHHHcCC----CcccchhhHHHHH
Confidence 7999999999888776554422 3333332 35789999999955432222211 12222332 2377888888766
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=82.60 E-value=29 Score=41.56 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=79.8
Q ss_pred CCCCCc---hhhHHHHHHHHHHHHhhc---------hhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhc
Q psy8796 140 PVKYHN---WRHALNVAQTMFAMLKTG---------KMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY 207 (536)
Q Consensus 140 ~~pYHN---~~HA~dV~Q~~~~lL~~~---------~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilY 207 (536)
...||- +.|..-|++.+-.+.... .+-..+..-+ .|.+|||+||+|=+...
T Consensus 442 ~d~yH~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--lL~lAaLlHDIGKg~~~--------------- 504 (869)
T PRK04374 442 FDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPE--LLLLAGLFHDIAKGRGG--------------- 504 (869)
T ss_pred ccCccCCcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCcc--HHHHHHHHHhccCCCCC---------------
Confidence 356664 578888888765443211 0111122223 57899999999875211
Q ss_pred CCCccccchhH----HHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHhcCCCCC
Q psy8796 208 TTSTMEHHHFD----QCVMILNSDGNNIFQALSPHDYRIVMKLVENSILST------DLAMYFKKKNRFIQLVENGEFDW 277 (536)
Q Consensus 208 n~SVLEnhH~a----~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT------DMa~Hf~~~~~f~~~~~~~~~d~ 277 (536)
-|.. .+-.++.+- +++.++.+.+..+|..-.+-- |++. -+.+.+|.+.+.+
T Consensus 505 -------dHs~~Ga~~a~~i~~Rl------~l~~~~~~~v~~LV~~Hl~m~~~aqr~di~D-~~~i~~fa~~v~~----- 565 (869)
T PRK04374 505 -------DHSELGAVDARAFCLAH------RLSEGDTELVTWLVEQHLRMSVTAQKQDISD-PEVIHRFATLVGT----- 565 (869)
T ss_pred -------ChHHHhHHHHHHHHHHc------CCCHHHHHHHHHHHHHhhhHHHHHhccCCCC-HHHHHHHHHHhCC-----
Confidence 1332 234555543 367777777777776542222 2221 2345555554421
Q ss_pred CcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhH
Q psy8796 278 QSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDL 323 (536)
Q Consensus 278 ~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~ 323 (536)
.+. +-+=++++.||+.... | ..-..|...+..|.|.....
T Consensus 566 --~~~--L~~L~~Lt~ADi~a~~-~-~~wn~Wk~~LL~~Ly~~t~~ 605 (869)
T PRK04374 566 --RER--LDYLYLLTCADIAGTS-P-KLWNAWKDRLLADLYFAARR 605 (869)
T ss_pred --HhH--HHHHHhHHHHHccCCC-c-chhhHHHHHHHHHHHHHHHH
Confidence 111 2223469999996554 2 44468999999999987544
No 37
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=82.21 E-value=1.7 Score=47.68 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=46.1
Q ss_pred CCc-hhhHHHHHHHHHHHHhhch--hhccCCH-HHHHH-HHHHhhccCCCCCCCCccccccccchhhhhcCC-Cccccch
Q psy8796 143 YHN-WRHALNVAQTMFAMLKTGK--MERFMSD-LEILG-LLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHH 216 (536)
Q Consensus 143 YHN-~~HA~dV~Q~~~~lL~~~~--l~~~ls~-lE~lA-llvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH 216 (536)
||| ..|+..|+|..-.+.+.-. ...-+.. ++.-. +-.|||+||+|||-+.=.+... |...+.+ -- =.|
T Consensus 56 ~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiGhpPfgH~gE~~----L~~~~~~~gg--FEg 129 (432)
T PRK05318 56 YRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIGHPPFGHGGEVA----LNYMMRDHGG--FEG 129 (432)
T ss_pred CcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCCCCCCcccHHHH----HHHHHHhcCC--Cch
Confidence 455 5899999999877766431 0000100 11112 3478899999999887665433 2222221 11 237
Q ss_pred hHHHHHHHhc
Q psy8796 217 FDQCVMILNS 226 (536)
Q Consensus 217 ~a~~~~iL~~ 226 (536)
-++.++||.+
T Consensus 130 NaQslRIlt~ 139 (432)
T PRK05318 130 NGQTFRILTK 139 (432)
T ss_pred HHHHHHHHHH
Confidence 8899998865
No 38
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=81.69 E-value=2.4 Score=33.77 Aligned_cols=41 Identities=22% Similarity=0.132 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCC
Q psy8796 145 NWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTN 192 (536)
Q Consensus 145 N~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~n 192 (536)
.+.|+..|+..+..+.+..+ ++. -.+.+|||+||+|-+...
T Consensus 5 ~~~H~~~v~~~a~~la~~~~----~~~---~~l~~AalLHDiG~~~~~ 45 (80)
T TIGR00277 5 VLQHSLEVAKLAEALARELG----LDV---ELARRGALLHDIGKPITR 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHcC----CCH---HHHHHHHHHHccCCcccc
Confidence 37899999999988876543 233 237799999999988654
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=80.97 E-value=14 Score=43.04 Aligned_cols=139 Identities=16% Similarity=0.098 Sum_probs=76.7
Q ss_pred CCCCCCc---hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccc
Q psy8796 139 RPVKYHN---WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHH 215 (536)
Q Consensus 139 ~~~pYHN---~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnh 215 (536)
...+||. +.|...|++.+..+... ...-+ .+.+|||+||+|=+.-. -
T Consensus 372 Q~d~yH~ytVDeHTL~~l~~~~~~~~~------~~~~~--lL~LAALlHDIGKg~g~----------------------d 421 (693)
T PRK00227 372 PREPSHIHTIDEHSLNTVANCALETVT------VARPD--LLLLGALYHDIGKGYPR----------------------P 421 (693)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhhc------cCccH--HHHHHHHHHhhcCCCCC----------------------C
Confidence 3466775 45776666654444221 22233 35799999999976310 1
Q ss_pred hhHH----HHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhH-----HHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q psy8796 216 HFDQ----CVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAM-----YFKKKNRFIQLVENGEFDWQSEEKKQLL 286 (536)
Q Consensus 216 H~a~----~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~-----Hf~~~~~f~~~~~~~~~d~~~~e~r~ll 286 (536)
|... +-.++.+- ++++++.+.+..+|..-.+--.++. --+.+.+|-+.+.. +++. +-
T Consensus 422 Hs~~GA~~A~~i~~RL------gl~~~~~e~V~~LV~~HL~ms~~AqrrDi~dp~~I~~fa~~vg~------~~~~--L~ 487 (693)
T PRK00227 422 HEQVGAEMVARAARRM------GLNLRDRAVVQTLVAEHTTLARIAGRLDPTSEEAVDKLLDAVRY------DLLT--LN 487 (693)
T ss_pred hhHHHHHHHHHHHHHc------CcCHHHHHHHHHHHHHhccHhHHhhccCCCCHHHHHHHHHHhCC------Chhh--HH
Confidence 3332 33444443 3677777777777765432222111 12445555544421 1211 11
Q ss_pred HHHHHhhccccCCC-CCHHHHHHHHHHHHHHhhhchhHH
Q psy8796 287 CGMMMTACDVGAIA-KPWEVQHKMAKLVADEFFDQGDLE 324 (536)
Q Consensus 287 l~lllkaADiSn~~-Rp~~v~~kWa~~l~~EFf~QGD~E 324 (536)
+=++++.||+.... +-| ..|...+..|.|.....-
T Consensus 488 lL~lLt~ADi~Atgp~~W---n~wka~Ll~~L~~~a~~~ 523 (693)
T PRK00227 488 LLEVLTEADAEGTGPGVW---TARLEQGLRIVCSRARAR 523 (693)
T ss_pred HHHHHHHhhhccCCCCcc---cHHHHHHHHHHHHHHHHH
Confidence 11268999995543 344 579999999999886544
No 40
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=80.36 E-value=1.7 Score=47.73 Aligned_cols=72 Identities=19% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCc-hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHHH
Q psy8796 143 YHN-WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCV 221 (536)
Q Consensus 143 YHN-~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~~ 221 (536)
||| ..|+..|+|..-.+...-++ + .-.+..|||+||+|||-+.-.....-+. +..-|+ ==.|-++++
T Consensus 68 ~~tRltHslev~~~~r~~~~~~~~----~---~~~~~~~~l~hd~GhpPfgH~gE~~l~~-~~~~~g----gFEGNAQsl 135 (428)
T PRK03007 68 PRTRLTHSLEVAQIGRGIAAGLGC----D---PDLVDLAGLAHDIGHPPYGHNGERALDE-VAADCG----GFEGNAQTL 135 (428)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHHHHhcCCCCCCcccHHHHHHH-HHHhCC----CCchHHHHH
Confidence 555 58999999999888765432 1 1235689999999999776544322211 111111 014778899
Q ss_pred HHHhc
Q psy8796 222 MILNS 226 (536)
Q Consensus 222 ~iL~~ 226 (536)
+||.+
T Consensus 136 RIlt~ 140 (428)
T PRK03007 136 RILTR 140 (428)
T ss_pred HHHHH
Confidence 88865
No 41
>PRK03381 PII uridylyl-transferase; Provisional
Probab=80.07 E-value=37 Score=40.17 Aligned_cols=138 Identities=20% Similarity=0.205 Sum_probs=74.0
Q ss_pred CCCCCch---hhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccch
Q psy8796 140 PVKYHNW---RHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHH 216 (536)
Q Consensus 140 ~~pYHN~---~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH 216 (536)
...||.. .|...|++.+..+.. .+.+-++ +.+|||+||+|-+... -|
T Consensus 413 ~~~~H~ytVd~Htl~~l~~~~~~~~------~~~~~~l--L~lAaLlHDiGKg~~~----------------------~H 462 (774)
T PRK03381 413 RDPVHRWTVDRHLVETAVRAAALTR------RVARPDL--LLLGALLHDIGKGRGG----------------------DH 462 (774)
T ss_pred CCCCccChHHHHHHHHHHHHHHHHh------ccCCHHH--HHHHHHHHhhcCCCCC----------------------Ch
Confidence 3577764 577777665533322 2333343 5799999999974211 13
Q ss_pred hHH----HHHHHhcCCCccccCCCHHHHHHHHHHHHHH-HHh-c----chhHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q psy8796 217 FDQ----CVMILNSDGNNIFQALSPHDYRIVMKLVENS-ILS-T----DLAMYFKKKNRFIQLVENGEFDWQSEEKKQLL 286 (536)
Q Consensus 217 ~a~----~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~-ILA-T----DMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~ll 286 (536)
... +-.++.+- +++.++.+.+..+|..- .++ + |+.. -+.+.+|-+.+.. +++. +-
T Consensus 463 s~~Ga~~a~~i~~RL------~l~~~~~~~v~~LV~~Hl~~~~~a~rrdi~d-~~~i~~f~~~vg~------~~e~--L~ 527 (774)
T PRK03381 463 SVVGAELARQIGARL------GLSPADVALLSALVRHHLLLPETATRRDLDD-PATIEAVAEALGG------DPVL--LE 527 (774)
T ss_pred HHHHHHHHHHHHHHc------CcCHHHHHHHHHHHHHhhhHHHHHhhcCCCC-HHHHHHHHHHhCC------hHHH--HH
Confidence 322 33455443 35677777777766532 222 1 1111 1334444443321 1121 22
Q ss_pred HHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHH
Q psy8796 287 CGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLE 324 (536)
Q Consensus 287 l~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~E 324 (536)
.=++++.||+..... ..-..|...+..|.|......
T Consensus 528 ~L~~Lt~AD~~a~~~--~~wn~wk~~ll~~L~~~~~~~ 563 (774)
T PRK03381 528 LLHALTEADSLATGP--GVWSDWKASLVGDLVRRCRAV 563 (774)
T ss_pred HHHHHHHhhccccCc--chhhHHHHHHHHHHHHHHHHH
Confidence 234688999966542 223578888888888876443
No 42
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=79.79 E-value=2.2 Score=46.98 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCCc-hhhHHHHHHHHHHHHhhch--hhc-----cCCHHHH-HHHHHHhhccCCCCCCCCcccc
Q psy8796 142 KYHN-WRHALNVAQTMFAMLKTGK--MER-----FMSDLEI-LGLLVACLCHDLDHRGTNNAFQ 196 (536)
Q Consensus 142 pYHN-~~HA~dV~Q~~~~lL~~~~--l~~-----~ls~lE~-lAllvAALcHDvdHpG~nN~Fl 196 (536)
-+|| ..|...|+|..-.+...-. +.. ...+.++ -.+-.|||+||+|||-+.=...
T Consensus 58 ~~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiGhpPFgH~gE 121 (440)
T PRK01096 58 HIHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHFGE 121 (440)
T ss_pred CCcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCCCCCCcccHH
Confidence 3565 5899999999877754322 111 1111122 2456889999999997765544
No 43
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=79.50 E-value=45 Score=36.38 Aligned_cols=40 Identities=35% Similarity=0.485 Sum_probs=25.6
Q ss_pred CCCCCc----hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCC
Q psy8796 140 PVKYHN----WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGT 191 (536)
Q Consensus 140 ~~pYHN----~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~ 191 (536)
+..||. +.|...|++.+-.+- .+ +.+.+||||||+|-|.+
T Consensus 219 ~~~~H~e~dv~~Htl~~l~~~~~l~---------~~---l~lr~AaLlHDlGK~~t 262 (409)
T PRK10885 219 PAKWHPEIDTGIHTLMVLDQAAKLS---------PS---LDVRFAALCHDLGKGLT 262 (409)
T ss_pred CcCCCCCCcHHHHHHHHHHHHHhcC---------CC---HHHHHHHHhccccCCCC
Confidence 355664 577777766443321 11 24889999999998754
No 44
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=77.55 E-value=2.9 Score=46.71 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=32.7
Q ss_pred CCCCc-hhhHHHHHHHHHHHHhhch--hh--c-----cCC--HHHHHHH-HHHhhccCCCCCCCCccc
Q psy8796 141 VKYHN-WRHALNVAQTMFAMLKTGK--ME--R-----FMS--DLEILGL-LVACLCHDLDHRGTNNAF 195 (536)
Q Consensus 141 ~pYHN-~~HA~dV~Q~~~~lL~~~~--l~--~-----~ls--~lE~lAl-lvAALcHDvdHpG~nN~F 195 (536)
--+|| ..|+..|+|..-.+...-. +. . .++ +.++-.+ -.|||+||+|||-+.=..
T Consensus 61 d~~rtRltHSleV~~i~r~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~lveaa~L~HDiGhpPFGH~G 128 (503)
T PRK04926 61 AAVRSRLTHSLEVQQVGRYIAKEILSRLKEQKLLEAYGLDELTGPFESIVEMACLMHDIGNPPFGHFG 128 (503)
T ss_pred CCeeCHhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchHHHHHHHHHHhcCCCCCCcccH
Confidence 44676 4899999998876644210 00 0 121 1222233 488999999999765433
No 45
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=77.49 E-value=2.8 Score=42.10 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=42.7
Q ss_pred hhcccCHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhc--hhhccCCHHHHHHHHHHhhccCCCC
Q psy8796 118 KQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTG--KMERFMSDLEILGLLVACLCHDLDH 188 (536)
Q Consensus 118 ~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~--~l~~~ls~lE~lAllvAALcHDvdH 188 (536)
..+.||...+.+-+......+. +-|.+.|..-|..+...+.+.. ++ -+ +...+++|||.||+|=
T Consensus 31 ~~~~iPdt~l~~~a~~~~~~~l--~~~~~~Hs~RV~~~a~~ia~~e~~~~--~~---D~evl~lAALLHDIG~ 96 (228)
T TIGR03401 31 EDTPLPDTPLVKFAQEYAKARL--PPETYNHSLRVYYYGLAIARDQFPEW--DL---SDETWFLTCLLHDIGT 96 (228)
T ss_pred CCCCCCChHHHHHHHHHHHhhC--CHhhhHHHHHHHHHHHHHHHHhcccc--CC---CHHHHHHHHHHHhhcc
Confidence 3456777777766555444432 3499999999999887776532 11 12 2334789999999973
No 46
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=76.29 E-value=15 Score=38.94 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=42.8
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCcc
Q psy8796 138 YRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNA 194 (536)
Q Consensus 138 Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~ 194 (536)
+..--...+.|...|+-.+-.+-+..+ |++.++..|.+||++||+|=-|..+.
T Consensus 142 ~~~kd~~t~~Hs~~va~~a~~ia~~lg----l~~~~i~~l~~aalLHDIGKi~ip~~ 194 (344)
T COG2206 142 IKAKDDYTYGHSVRVAELAEAIAKKLG----LSEEKIEELALAGLLHDIGKIGIPDS 194 (344)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhhcccccCCHH
Confidence 333444568899999998888877654 78999999999999999998888763
No 47
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=74.31 E-value=4.9 Score=46.17 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=37.3
Q ss_pred eeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 18 TNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 18 TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
.++.+|+||.. +|+++|++.+.|+.... .|+.+|.+++..+..+.+.
T Consensus 409 ~~~~l~vPL~~-~~~~~G~l~l~~~~~~~-~~~~e~~~lL~~l~~q~a~ 455 (679)
T TIGR02916 409 PNAWLIVPLIS-GEELVGFVVLARPRTAG-EFNWEVRDLLKTAGRQAAS 455 (679)
T ss_pred CCceEEEEecc-CCEEEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 57899999986 67899999999987665 8999999976655544443
No 48
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=72.04 E-value=12 Score=37.85 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=60.3
Q ss_pred HHHcCCCCCCCchhhHHHHHH---HHHHHHhhchhhc------cCC-HHHHHHHHHHhhccCCCCCCCCccccccccchh
Q psy8796 134 VKKNYRPVKYHNWRHALNVAQ---TMFAMLKTGKMER------FMS-DLEILGLLVACLCHDLDHRGTNNAFQTKTESPL 203 (536)
Q Consensus 134 V~~~Y~~~pYHN~~HA~dV~Q---~~~~lL~~~~l~~------~ls-~lE~lAllvAALcHDvdHpG~nN~Fli~t~spL 203 (536)
-+.+|++ |+..||.-|+- .+|.+|..+++.. ..+ ..+....++||..||+||.=.- +.
T Consensus 50 ~RlgYND---HG~vHa~Iva~~Al~i~~lL~~~Gv~ps~v~dg~gd~eD~~vivlLga~LHDIGnsVHR------d~--- 117 (269)
T COG3294 50 GRLGYND---HGPVHARIVANSALAIYKLLLEKGVKPSGVTDGVGDEEDSPVIVLLGAYLHDIGNSVHR------DD--- 117 (269)
T ss_pred hhhcccC---CCceeeeeccchHHHHHHHHHhcCCCcccccccCCchhhhhHHHHHHHHHHhccchhcc------cc---
Confidence 4457876 55566655543 3455565544321 122 2456777899999999975321 11
Q ss_pred hhhcCCCccccchhHHHHHHHhcCCCccccCC--CHHHHHHHHHHHHHHHHhcchh
Q psy8796 204 AILYTTSTMEHHHFDQCVMILNSDGNNIFQAL--SPHDYRIVMKLVENSILSTDLA 257 (536)
Q Consensus 204 AilYn~SVLEnhH~a~~~~iL~~~~~nif~~l--~~~~~~~~r~~Ii~~ILATDMa 257 (536)
-|-|.+.++..|+.+ |+..+ +++..-.++..|-.+|.++|..
T Consensus 118 --------H~~~sa~La~~Ildr----IL~kiy~~~~k~~~~rsevlhAI~ch~~~ 161 (269)
T COG3294 118 --------HELYSAVLALDILDR----ILSKIYPDPEKAVRVRSEVLHAIYCHDEN 161 (269)
T ss_pred --------HHHHhHHHhHHHHHH----HhhhhcCCHHHHHhHHHHHHHHhhccCCC
Confidence 233344556666654 44333 2356667999999999998864
No 49
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=67.97 E-value=5.4 Score=45.20 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=34.5
Q ss_pred eeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHh
Q psy8796 18 TNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSY 63 (536)
Q Consensus 18 TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~ 63 (536)
=+|.|.+||.. .|+++||+.+=||... .|++..++.+...+..
T Consensus 107 Y~sFLGvPIi~-~~r~lGVLVVQqk~~R--~y~E~Eve~L~T~A~~ 149 (756)
T COG3605 107 YHSFLGVPIIR-RGRLLGVLVVQQRELR--QYDEDEVEFLVTLAMQ 149 (756)
T ss_pred HHHhhccceee-cCceeEEEEEeccccc--ccchHHHHHHHHHHHH
Confidence 37999999994 7899999999999876 5998888765554433
No 50
>PRK12704 phosphodiesterase; Provisional
Probab=62.88 E-value=11 Score=42.40 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCCCCC-CchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchh
Q psy8796 125 DVLCRWVLSVKKNYRPVKY-HNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPL 203 (536)
Q Consensus 125 ~~L~~Fl~~V~~~Y~~~pY-HN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spL 203 (536)
..+.++|..+ .|++..- .-|.|+..|++.+..|-...+ +++.. +..|||.||+|-.-..
T Consensus 317 ~~i~~ll~~l--~~R~~~~qn~l~Hs~~Va~lA~~lA~~lg----ld~~~---a~~AgLLHDIGK~~~~----------- 376 (520)
T PRK12704 317 PELIKLLGRL--KYRTSYGQNVLQHSIEVAHLAGLMAAELG----LDVKL---AKRAGLLHDIGKALDH----------- 376 (520)
T ss_pred HHHHHHHHHh--hccCcCCCcHhHHHHHHHHHHHHHHHHhC----cCHHH---HHHHHHHHccCcCccc-----------
Confidence 3456676665 4554222 247899999999988887644 34333 4689999999986310
Q ss_pred hhhcCCCccccchhHHHHHHHhcC
Q psy8796 204 AILYTTSTMEHHHFDQCVMILNSD 227 (536)
Q Consensus 204 AilYn~SVLEnhH~a~~~~iL~~~ 227 (536)
-.+.-|+.....++...
T Consensus 377 -------e~~~~H~~iGa~il~~~ 393 (520)
T PRK12704 377 -------EVEGSHVEIGAELAKKY 393 (520)
T ss_pred -------cccCCHHHHHHHHHHHc
Confidence 01345888888888763
No 51
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=59.03 E-value=8.8 Score=35.91 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=30.3
Q ss_pred CchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 144 HNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 144 HN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
+.|.|..-|+..+..+-+..+ +++ | -+++|+|+||+|..
T Consensus 8 ~r~~Hsl~Va~~a~~lA~~~~----~d~-e--~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 8 HRYQHCLGVGQTAKQLAEANK----LDS-K--KAEIAGAYHDLAKF 46 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----cCH-H--HHHHHHHHHHHhcc
Confidence 458899999999988877543 333 3 37799999999984
No 52
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=57.51 E-value=22 Score=39.95 Aligned_cols=116 Identities=19% Similarity=0.137 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCCCCCC-chhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhh
Q psy8796 126 VLCRWVLSVKKNYRPVKYH-NWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLA 204 (536)
Q Consensus 126 ~L~~Fl~~V~~~Y~~~pYH-N~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLA 204 (536)
.+.++|..++ |+...-. .|.|+..|+.++..|-...+ +++.. +..|||.||+|.....
T Consensus 312 ~~~~~l~~l~--~r~~~~~~~l~Hs~~VA~lA~~LA~~lg----ld~~~---a~~AGLLHDIGK~~~~------------ 370 (514)
T TIGR03319 312 ELIKLLGRLK--FRTSYGQNVLQHSIEVAHLAGIMAAELG----EDVKL---AKRAGLLHDIGKAVDH------------ 370 (514)
T ss_pred HHHHHHHHhh--ccccCCccHHHHHHHHHHHHHHHHHHhC----cCHHH---HHHHHHHHhcCcccch------------
Confidence 4456665543 5532222 58999999999998887654 34432 3479999999986310
Q ss_pred hhcCCCccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHH
Q psy8796 205 ILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQ 284 (536)
Q Consensus 205 ilYn~SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~ 284 (536)
-.+.-|+.....++.+-+ +++ .|.++|.+ |-. .. . + .
T Consensus 371 ------e~~~~H~~~Ga~ll~~~~------~~~--------~V~~aI~~-----HH~----------~~--~---~---~ 407 (514)
T TIGR03319 371 ------EVEGSHVEIGAELAKKYK------ESP--------EVVNAIAA-----HHG----------DV--E---P---T 407 (514)
T ss_pred ------hhcccHHHHHHHHHHHcC------CCH--------HHHHHHHH-----hCC----------CC--C---C---C
Confidence 013458888888886532 222 25555532 111 00 0 0 1
Q ss_pred HHHHHHHhhccccCCCCCHHH
Q psy8796 285 LLCGMMMTACDVGAIAKPWEV 305 (536)
Q Consensus 285 lll~lllkaADiSn~~Rp~~v 305 (536)
-++..++++||.-...||..-
T Consensus 408 ~~~a~IV~~AD~lsa~rpgar 428 (514)
T TIGR03319 408 SIEAVLVAAADALSAARPGAR 428 (514)
T ss_pred CHHHHHHHHHHHhcCCCCCCc
Confidence 256678999998888887754
No 53
>PRK00106 hypothetical protein; Provisional
Probab=53.35 E-value=20 Score=40.58 Aligned_cols=128 Identities=15% Similarity=0.094 Sum_probs=75.8
Q ss_pred hhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 110 mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
...++|+. +++ ..+.++|-.++..+.... ..|.|...|+.++..|-...++ + .--+.+|+|.||+|--
T Consensus 321 a~~~lg~~---~~~-~e~~~~lg~l~~r~sy~q-nl~~HSv~VA~lA~~lA~~lgl----d---~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 321 AAYEIGAP---NLH-PDLIKIMGRLQFRTSYGQ-NVLRHSVEVGKLAGILAGELGE----N---VALARRAGFLHDMGKA 388 (535)
T ss_pred HHHHcCCC---CCC-HHHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHHHHHhccCc
Confidence 33445543 344 456677765543322222 2699999999999888765442 2 3457889999999976
Q ss_pred CCCccccccccchhhhhcCCCccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q psy8796 190 GTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQL 269 (536)
Q Consensus 190 G~nN~Fli~t~spLAilYn~SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~ 269 (536)
+... .+.-|+.....++...+ +++ .++++|.+ .|.
T Consensus 389 -v~~e-----------------~~g~Ha~iGa~ll~~~~------~~~--------~v~~aI~~----HH~--------- 423 (535)
T PRK00106 389 -IDRE-----------------VEGSHVEIGMEFARKYK------EHP--------VVVNTIAS----HHG--------- 423 (535)
T ss_pred -cCcc-----------------ccCChHHHHHHHHHHcC------CCH--------HHHHHHHH----hCC---------
Confidence 3211 12248888888886432 233 25555543 111
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHH
Q psy8796 270 VENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWE 304 (536)
Q Consensus 270 ~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~ 304 (536)
..... -.+..++++||.=...||..
T Consensus 424 ----~~~~~------s~~a~IV~~AD~lsa~Rpga 448 (535)
T PRK00106 424 ----DVEPE------SVIAVIVAAADALSSARPGA 448 (535)
T ss_pred ----CCCCC------ChHHHHHHHHHHhccCCCCC
Confidence 11111 14567899999888888754
No 54
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=49.80 E-value=19 Score=38.11 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHhhchhh--------ccCCHHHHHHHHHHhhccCCCCC
Q psy8796 146 WRHALNVAQTMFAMLKTGKME--------RFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 146 ~~HA~dV~Q~~~~lL~~~~l~--------~~ls~lE~lAllvAALcHDvdHp 189 (536)
++|+.+|+-+...+-+.-.+. ....+.=.+|+++||||||+|=|
T Consensus 68 l~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~ 119 (327)
T PF07514_consen 68 LDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKP 119 (327)
T ss_pred HHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCcc
Confidence 589999987766654322111 12234446799999999999875
No 55
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=49.05 E-value=40 Score=31.90 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=46.1
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccch
Q psy8796 137 NYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHH 216 (536)
Q Consensus 137 ~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH 216 (536)
.|. .+=+-+.|...|+..+..+....+... -+.+.--+.+|||.||+|-....+ .-|
T Consensus 7 ~~~-~~~~~~~Hs~~Va~~A~~ia~~~~~~~--~~~d~~~l~~aaLLHDIGK~~~~~--------------------~~H 63 (164)
T TIGR00295 7 KYK-CDESVRRHCLAVARVAMELAENIRKKG--HEVDMDLVLKGALLHDIGRARTHG--------------------FEH 63 (164)
T ss_pred HhC-CCccHHHHHHHHHHHHHHHHHHhcccc--ccCCHHHHHHHHHHhcCCcccCCC--------------------CCH
Confidence 443 345579999999999988876543211 123566789999999999654321 247
Q ss_pred hHHHHHHHhcC
Q psy8796 217 FDQCVMILNSD 227 (536)
Q Consensus 217 ~a~~~~iL~~~ 227 (536)
......+|...
T Consensus 64 ~~~G~~iL~~~ 74 (164)
T TIGR00295 64 FVKGAEILRKE 74 (164)
T ss_pred HHHHHHHHHHc
Confidence 77777888753
No 56
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=47.47 E-value=3e+02 Score=30.40 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=13.9
Q ss_pred HHHHHHhhccCCCCCCC
Q psy8796 175 LGLLVACLCHDLDHRGT 191 (536)
Q Consensus 175 lAllvAALcHDvdHpG~ 191 (536)
+.+-+||||||+|-|.+
T Consensus 247 l~lR~AaLlHDiGK~~t 263 (417)
T PRK13298 247 IDIRFSYLCQFLGSMIP 263 (417)
T ss_pred HHHHHHHHHhhhcCCCC
Confidence 34789999999999853
No 57
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=45.87 E-value=21 Score=28.96 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=18.9
Q ss_pred eeeeeEEeeeecCCCcEEEEEEE
Q psy8796 17 TTNSILCVPINSYEGEVIGVAQI 39 (536)
Q Consensus 17 ~TrSiLc~Pi~~~~~~vIGViql 39 (536)
..--.+++||++.+|+++||+-+
T Consensus 12 ~~vi~~s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 12 QPVITISVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEE
T ss_pred cEEEEEEEEEECCCCCEEEEEEE
Confidence 34456899999988999999975
No 58
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=45.84 E-value=8.7 Score=37.35 Aligned_cols=40 Identities=35% Similarity=0.479 Sum_probs=25.0
Q ss_pred HcCC--CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 136 KNYR--PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 136 ~~Y~--~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
..|- +++| ..|+..|++... ..|. + -.+++|||.||+||-
T Consensus 17 ~~y~Ge~Vs~--leH~LQ~A~lA~---~~Ga-----d----~elvvAALLHDIGhl 58 (179)
T TIGR03276 17 RQYGGEAVSQ--LEHALQCAQLAE---AAGA-----D----DELIVAAFLHDIGHL 58 (179)
T ss_pred cccCCCCCcH--HHHHHHHHHHHH---HcCC-----C----HHHHHHHHHHhcchh
Confidence 3454 3555 788887766322 2221 1 235899999999995
No 59
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=44.68 E-value=39 Score=33.78 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=38.1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCc
Q psy8796 138 YRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNN 193 (536)
Q Consensus 138 Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN 193 (536)
|+.-+=|.+.|...|+-.++.|-...+ .+...+..|||.||+++.=.++
T Consensus 30 ~~~~~~~~l~H~~~Va~lA~~Ia~~~g-------~D~~l~~~aaLLHDIg~~~~~~ 78 (222)
T COG1418 30 FRTYGQHVLEHSLRVAYLAYRIAEEEG-------VDPDLALRAALLHDIGKAIDHE 78 (222)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHhhccccccC
Confidence 443233999999999999998877533 3667888999999999876655
No 60
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=42.12 E-value=37 Score=28.99 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=24.3
Q ss_pred cCCceeeeeEEeeeecCCCcEEEEEEEEe
Q psy8796 13 RTGYTTNSILCVPINSYEGEVIGVAQIIN 41 (536)
Q Consensus 13 ~tgy~TrSiLc~Pi~~~~~~vIGViqliN 41 (536)
.--|+-.-++.+||++.+|++||.|-++.
T Consensus 53 ~G~Y~G~PViV~PI~~~~g~viaAiGvVD 81 (84)
T PF09884_consen 53 EGPYKGVPVIVAPIKDEDGEVIAAIGVVD 81 (84)
T ss_pred CcccCCeeEEEEEEEcCCCCEEEEEEEEE
Confidence 34588889999999998899999887653
No 61
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=41.57 E-value=26 Score=26.07 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=16.9
Q ss_pred eeeEEeeeecCCCcEEEEEE
Q psy8796 19 NSILCVPINSYEGEVIGVAQ 38 (536)
Q Consensus 19 rSiLc~Pi~~~~~~vIGViq 38 (536)
..+-++||.|.+|+++|++-
T Consensus 28 ~~~~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 28 NGISRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp HTSSEEEEESTTSBEEEEEE
T ss_pred cCCcEEEEEecCCEEEEEEE
Confidence 44678999999999999985
No 62
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=40.97 E-value=9.2 Score=36.67 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhc
Q psy8796 128 CRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY 207 (536)
Q Consensus 128 ~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilY 207 (536)
..|...-...|..-|---..||..++ ..-=+.|. --+++.|||.||+||==- ++.--+
T Consensus 14 ~~F~~~g~e~y~ge~VTq~eHaLQ~A---tlAerdGa---------~~~lVaaALLHDiGhl~~----------~~g~~p 71 (186)
T COG4341 14 YLFLRHGDEGYSGEPVTQLEHALQCA---TLAERDGA---------DTALVAAALLHDIGHLYA----------DYGHTP 71 (186)
T ss_pred HHHHHccccccccCcchhhhhHHHHh---HHHHhcCC---------cHHHHHHHHHHhHHHHhh----------hcCCCc
Confidence 34555556677766666677775443 22222221 137889999999998410 011011
Q ss_pred C-CCccccchhHHHHHHHhc
Q psy8796 208 T-TSTMEHHHFDQCVMILNS 226 (536)
Q Consensus 208 n-~SVLEnhH~a~~~~iL~~ 226 (536)
. .++...+|-..+..+|..
T Consensus 72 s~~~i~d~~hee~~~~vL~~ 91 (186)
T COG4341 72 SAAGIDDPFHEEFATPVLRK 91 (186)
T ss_pred cccccchhHHHHHhHHHHHH
Confidence 1 368888898888888876
No 63
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=39.79 E-value=28 Score=30.68 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=14.6
Q ss_pred EEeeeecCCCcEEEEEEEE
Q psy8796 22 LCVPINSYEGEVIGVAQII 40 (536)
Q Consensus 22 Lc~Pi~~~~~~vIGViqli 40 (536)
..+||++.+|++|||+.+-
T Consensus 92 ~~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEEE-TTS-EEEEEEEE
T ss_pred EEEeeECCCCcEEEEEEEE
Confidence 5689998899999999764
No 64
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=38.16 E-value=51 Score=35.21 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=31.6
Q ss_pred CCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCC
Q psy8796 142 KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGT 191 (536)
Q Consensus 142 pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~ 191 (536)
+-+-+.|...|+..+..+....+ .+.-.+..|||.||++....
T Consensus 185 ~e~l~~Hs~rVa~lA~~LA~~~~-------~D~~ll~aAALLHDIGK~k~ 227 (339)
T PRK12703 185 SDLLIRHVKTVYKLAMRIADCIN-------ADRRLVAAGALLHDIGRTKT 227 (339)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHhcccccc
Confidence 33469999999999988876532 22344668999999998643
No 65
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=37.03 E-value=39 Score=31.34 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHhh-chhhccCCHHHHHHHHHHhhccCCCC
Q psy8796 147 RHALNVAQTMFAMLKT-GKMERFMSDLEILGLLVACLCHDLDH 188 (536)
Q Consensus 147 ~HA~dV~Q~~~~lL~~-~~l~~~ls~lE~lAllvAALcHDvdH 188 (536)
.|..||+..+-.+... ..+...+.....-.+.+||++||+|=
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK 45 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGK 45 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCcc
Confidence 6889998877654311 01111122123456778999999985
No 66
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=33.74 E-value=68 Score=28.14 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=35.8
Q ss_pred HHHhHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHh
Q psy8796 352 IDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVE 392 (536)
Q Consensus 352 i~~iv~Plf~~l~~~~P~l~~l~~~l~~N~~~W~~l~e~~e 392 (536)
-|.-|.+||..|..+.|.+-..++...+-+.+|+.+-+++.
T Consensus 30 nDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~ 70 (96)
T PF12210_consen 30 NDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLA 70 (96)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999998889999999999999988775
No 67
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=33.13 E-value=34 Score=36.18 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCC
Q psy8796 145 NWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRG 190 (536)
Q Consensus 145 N~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG 190 (536)
-|.|+..|+..+..+....+ +++ --+.+|||.||+|=-.
T Consensus 197 ~~~HSl~VA~~A~~LA~~~g----~d~---~~a~~AGLLHDIGK~~ 235 (342)
T PRK07152 197 RYKHCLRVAQLAAELAKKNN----LDP---KKAYYAGLYHDITKEW 235 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhC----cCH---HHHHHHHHHHHhhccC
Confidence 68999999999888876544 344 3445899999999754
No 68
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=32.36 E-value=90 Score=34.91 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 127 LCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 127 L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
+...+..+...|. -+..||..|..++..+...-.-...+.+.+...|-.||+.||+|.-
T Consensus 309 ~~~s~~~l~~ry~----~d~~ha~~v~~~a~~Lf~~l~~~~~l~~~~~~LL~~Aa~LhdiG~~ 367 (496)
T PRK11031 309 RSRTLRNIQRRFQ----IDTEQAQRVAKLADNFLQQVENEWHLEPRSRELLISACQLHEIGLS 367 (496)
T ss_pred HHHHHHHHHHHcC----cCHHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhcCCc
Confidence 3444666666663 2467999998888777654322234688899999999999999864
No 69
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=29.55 E-value=65 Score=35.66 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCC
Q psy8796 143 YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGT 191 (536)
Q Consensus 143 YHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~ 191 (536)
|.-|.|...|+..+..+-.. . ....+.+|||+||+|-|.+
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~--------~-~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDD--------G-PDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred CcHHHHHHHHHHHHHhcccc--------c-cCHHHHHHHHHhhccCCCC
Confidence 44567776666554322110 0 1237899999999987654
No 70
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=29.22 E-value=88 Score=31.33 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCC
Q psy8796 147 RHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLD 187 (536)
Q Consensus 147 ~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvd 187 (536)
.|.+-|++..+.+-.... ..-..+++-+++..||+||+.
T Consensus 32 ~HSf~Va~iA~~Lg~iee--~~G~~vd~~~lyekAL~HD~~ 70 (215)
T PF12917_consen 32 EHSFKVAMIAQFLGDIEE--QFGNEVDWKELYEKALNHDYP 70 (215)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTT----HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHH--HhCCccCHHHHHHHHhccccH
Confidence 688888888776654321 234568888999999999983
No 71
>COG4048 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.38 E-value=66 Score=28.92 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=27.8
Q ss_pred cccCCceeeeeEEeeeecCCCcEEEEEEEEecCCC
Q psy8796 11 DRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDG 45 (536)
Q Consensus 11 D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~ 45 (536)
-..--|+-+.+..+||++ +|+||+.+-++.-..+
T Consensus 69 P~~GpY~G~pVVV~Pik~-~g~viaAiGiVDlt~g 102 (123)
T COG4048 69 PIIGPYRGLPVVVAPIKD-EGEVIAAIGIVDLTAG 102 (123)
T ss_pred CCCCccCCceEEEEEecc-CCeEEEEEEeeehhhh
Confidence 344568999999999995 8899999998887655
No 72
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=27.44 E-value=1.3e+02 Score=34.08 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=34.2
Q ss_pred CCCCCccccccC----CceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCC---CHHHHHHH
Q psy8796 3 DPRFNNEIDRRT----GYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSF---TDRDIEVA 57 (536)
Q Consensus 3 dprF~~~~D~~t----gy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~F---t~~D~~~~ 57 (536)
|+-|....|..- |-...+.|++||+. .++++|++-+---..+. | .+++...+
T Consensus 122 d~~~~~~~~~l~~~~~~~~~~a~i~~PL~~-~~~~~G~Ltld~~~~~~--f~~~~~~~lr~L 180 (550)
T COG3604 122 DSLFPDPYDGLLPDTEGNKKHACIGVPLKS-GDKLIGALTLDHTEPDQ--FDEDLDEELRFL 180 (550)
T ss_pred CcccCCcccccccCccCCcceeEEeeeeee-CCeeeeeEEeeeecccc--cchhHHHHHHHH
Confidence 455554444332 22458999999995 67899999998877653 5 34444443
No 73
>KOG1348|consensus
Probab=25.58 E-value=46 Score=35.89 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=20.7
Q ss_pred CCCCchhhHHHHHHHHHHHHhhchh
Q psy8796 141 VKYHNWRHALNVAQTMFAMLKTGKM 165 (536)
Q Consensus 141 ~pYHN~~HA~dV~Q~~~~lL~~~~l 165 (536)
+.|-|.+|-+||+|+ |.+|+.+++
T Consensus 55 ngyyNYRHQADvcHA-YqiLrkgGi 78 (477)
T KOG1348|consen 55 NGYYNYRHQADVCHA-YQILRKGGI 78 (477)
T ss_pred CcccchhhhhhHHHH-HHHHHhcCC
Confidence 789999999999996 888887764
No 74
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.56 E-value=2e+02 Score=28.00 Aligned_cols=141 Identities=21% Similarity=0.242 Sum_probs=82.8
Q ss_pred chhhhcccCHHHHHHHHHHHHHcCCC--CCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCC
Q psy8796 115 DLVKQFHIPYDVLCRWVLSVKKNYRP--VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTN 192 (536)
Q Consensus 115 ~l~~~f~I~~~~L~~Fl~~V~~~Y~~--~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~n 192 (536)
.+++.|+.+.. ..-+..+-..|+. --|||-.|-..|+|.+--+-. +..-.. ++=+|+-.||+
T Consensus 11 ~l~q~lg~~~~--~~~f~~L~aaY~~~dRHYH~l~HI~a~L~~~~~~r~---la~dp~-----~VElA~WfHD~------ 74 (208)
T COG4339 11 QLLQNLGVDKT--TQVFTHLIAAYSSPDRHYHTLKHISAVLQTIQTLRT---LAQDPP-----GVELAAWFHDV------ 74 (208)
T ss_pred HHHHHhcCCCc--hHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHH---HhcCCc-----hhHHHHHHHHH------
Confidence 45666666432 1223344456773 679999999999987643321 111112 23356667886
Q ss_pred ccccccccchhhhhcCC--CccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q psy8796 193 NAFQTKTESPLAILYTT--STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLV 270 (536)
Q Consensus 193 N~Fli~t~spLAilYn~--SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~ 270 (536)
+|.+ .=.|-...+.+-.-|++-|- ..++.-|..+||||--.+
T Consensus 75 -------------iYDtqaqDNEa~Saa~a~~~L~s~g~-----------p~~~~~v~~lIlaT~~HQ------------ 118 (208)
T COG4339 75 -------------IYDTQAQDNEAKSAAYAGAALQSLGI-----------PSCITKVKRLILATKHHQ------------ 118 (208)
T ss_pred -------------HhhhhccccHHHhHHHHHHHHHhCCC-----------hHHHHHHHHHHHHHhccc------------
Confidence 3432 23455666777777766541 146677899999996421
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHh
Q psy8796 271 ENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEF 317 (536)
Q Consensus 271 ~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EF 317 (536)
.+. +..+-.+++. +|++-..-|-..+......|-.|+
T Consensus 119 ----app-dDaDa~l~lD-----~DLaILaa~~~~y~~Ye~avR~EY 155 (208)
T COG4339 119 ----APP-DDADAQLLLD-----ADLAILAANRVDYQEYEHAVRQEY 155 (208)
T ss_pred ----CCC-ccccHHHHhh-----ccHHHHcCCchhHHHHHHHHHHHh
Confidence 111 1113344443 477777777788888887787776
No 75
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=23.80 E-value=1.3e+02 Score=34.42 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=23.1
Q ss_pred eeeeeEEeeeecCCCcEEEEEEEEecC
Q psy8796 17 TTNSILCVPINSYEGEVIGVAQIINKT 43 (536)
Q Consensus 17 ~TrSiLc~Pi~~~~~~vIGViqliNK~ 43 (536)
+.-+..++||.+++|+++|||.+....
T Consensus 141 ~~~~c~aaPI~d~~G~liGvl~l~~~~ 167 (638)
T PRK11388 141 HNWAFCATPVFDSKGRLTGTIALACPV 167 (638)
T ss_pred cCceEEeeEEEcCCCCEEEEEEEEecc
Confidence 334678999999999999999999865
No 76
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=22.57 E-value=3.6e+02 Score=27.00 Aligned_cols=123 Identities=9% Similarity=0.051 Sum_probs=66.7
Q ss_pred ccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccccchhcccCCcccccccc
Q psy8796 10 IDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLY 89 (536)
Q Consensus 10 ~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~~kLl~~~ip~~~~~~l~ 89 (536)
++....|.-++=+++|+..+.| .+|++-+........++...+....+..+..++.... .++...... .
T Consensus 107 ~~~a~~~Gl~~G~t~p~~~~~g-~~g~~s~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~---~~l~~~~~~-~------ 175 (240)
T PRK10188 107 WDAARAHGLRRGVTQCLMLPNR-ALGFLSFSRCSAREIPILSDELELRLQLLVRESLMAL---MRLEDEMVM-T------ 175 (240)
T ss_pred HHHHHHcCCcceEEEEeecCCC-CeEEEEEeccCCcccccchhhHHHHHHHHHHHHHHHH---HHhhhcccC-C------
Confidence 3444556667789999998776 5799999876432225665554322333322221111 112111000 0
Q ss_pred ceeeecCCCCchh--hhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHH
Q psy8796 90 SFTFIDFDLSDMD--TCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHAL 150 (536)
Q Consensus 90 s~~F~~~~l~~~e--l~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~ 150 (536)
....|++.| ..+.+..-.....+-+.++|+..++..-+..+.+.+. -+|..||+
T Consensus 176 ----~~~~LT~rE~evl~~~a~G~t~~eIa~~l~is~~TV~~h~~~~~~KL~---~~nr~q~v 231 (240)
T PRK10188 176 ----PEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFN---APNKTQIA 231 (240)
T ss_pred ----CCCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 011244333 2333333333455667789999999999999888775 34555554
No 77
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.53 E-value=77 Score=27.05 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=16.4
Q ss_pred eeeEEeeeecCCCcEEEEEEE
Q psy8796 19 NSILCVPINSYEGEVIGVAQI 39 (536)
Q Consensus 19 rSiLc~Pi~~~~~~vIGViql 39 (536)
..+=.+||.+.+|+++|+|-.
T Consensus 97 ~~~~~lpVvd~~~~~vGiit~ 117 (123)
T cd04627 97 EGISSVAVVDNQGNLIGNISV 117 (123)
T ss_pred cCCceEEEECCCCcEEEEEeH
Confidence 445578999888899999853
No 78
>PRK10854 exopolyphosphatase; Provisional
Probab=21.22 E-value=2e+02 Score=32.22 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhch-hh-ccCCHHHHHHHHHHhhccCCCCC
Q psy8796 126 VLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGK-ME-RFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 126 ~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~-l~-~~ls~lE~lAllvAALcHDvdHp 189 (536)
.+..-+..+...|. -+..||.-|+.++..+..... .. ..+++.+..-|-.||+.||+|.-
T Consensus 314 ~~~~s~~~la~ry~----~d~~ha~~V~~~a~~LFd~l~~~h~~~~~~~~~~LL~~Aa~LhdiG~~ 375 (513)
T PRK10854 314 IRSRTAKSLANHYN----IDREQARRVLETTMQLYEQWREQNPKLAHPQLEALLKWAAMLHEVGLN 375 (513)
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence 34445555566664 345788888888877765422 22 22478888899999999999854
No 79
>PF01614 IclR: Bacterial transcriptional regulator This Pfam family contains some of the members of the iclR family; InterPro: IPR014757 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; PDB: 3MQ0_A 2IA2_D 3OBF_B 2G7U_C 3R4K_A 1TF1_D 1MKM_A 1YSP_A 3BJN_A 1TD5_A ....
Probab=21.10 E-value=1.1e+02 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=24.8
Q ss_pred eeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHH
Q psy8796 20 SILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIE 55 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~ 55 (536)
+-+++||.+.+|+++|+|-+.=-.. .|+++...
T Consensus 80 ~~iA~Pi~~~~g~~~~alsv~~~~~---~~~~~~~~ 112 (129)
T PF01614_consen 80 AAIAVPIFDPNGQVVAALSVSGPSE---RFDEERLE 112 (129)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEGG---GSHHHHHH
T ss_pred ceEEEEEECCCCCEEEEEEEeeEhH---hCCHHHHH
Confidence 4589999999999999998887542 36655543
No 80
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=20.67 E-value=1.1e+02 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=18.4
Q ss_pred eeeeeEEeeeecCCCcEEEEEEEEe
Q psy8796 17 TTNSILCVPINSYEGEVIGVAQIIN 41 (536)
Q Consensus 17 ~TrSiLc~Pi~~~~~~vIGViqliN 41 (536)
+.--+-..|+.+.+|++.|++..+-
T Consensus 79 ~~~~~~~~P~~~~~g~~~G~v~~~~ 103 (106)
T PF13596_consen 79 RWYLVRYRPYRDEDGEYAGAVITFQ 103 (106)
T ss_dssp EEEEEEEEEEE-TTS-EEEEEEEEE
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEE
Confidence 3445678999999999999998763
Done!