Query psy8796
Match_columns 536
No_of_seqs 293 out of 1378
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:30:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibj_A CGMP-dependent 3',5'-cy 100.0 3.8E-93 1.3E-97 799.8 32.4 386 1-390 269-688 (691)
2 1tbf_A CGMP-specific 3',5'-cyc 100.0 1.5E-89 5E-94 714.5 30.0 330 60-389 13-347 (347)
3 3bjc_A CGMP-specific 3',5'-cyc 100.0 5.3E-90 1.8E-94 794.2 27.2 392 1-394 431-866 (878)
4 3itu_A CGMP-dependent 3',5'-cy 100.0 8.7E-89 3E-93 707.6 30.5 324 65-391 1-328 (345)
5 2our_A CAMP and CAMP-inhibited 100.0 4E-89 1.4E-93 707.8 27.3 331 62-399 1-331 (331)
6 3hr1_A CAMP and CAMP-inhibited 100.0 3.6E-88 1.2E-92 709.1 28.9 336 61-403 31-366 (380)
7 3dyn_A High affinity CGMP-spec 100.0 9.5E-86 3.3E-90 680.8 28.0 304 85-392 16-321 (329)
8 2r8q_A Class I phosphodiestera 100.0 4.8E-85 1.6E-89 683.4 25.3 328 61-393 14-352 (359)
9 3v93_A Cyclic nucleotide speci 100.0 2.3E-84 7.9E-89 674.3 26.1 299 86-389 39-342 (345)
10 1f0j_A PDE4B, phosphodiesteras 100.0 4.1E-84 1.4E-88 679.5 24.6 334 87-432 21-368 (377)
11 3qi3_A High affinity CGMP-spec 100.0 9.2E-83 3.2E-87 687.0 29.2 302 87-392 195-498 (533)
12 3ecm_A High affinity CAMP-spec 100.0 3.3E-83 1.1E-87 665.5 22.8 300 87-389 13-337 (338)
13 3g4g_A DPDE3, PDE43, CAMP-spec 100.0 2.4E-82 8E-87 671.6 26.7 299 87-387 100-411 (421)
14 1y2k_A DPDE3, PDE43, CAMP-spec 100.0 3.2E-82 1.1E-86 660.3 26.0 301 87-389 34-347 (349)
15 1zkl_A HCP1, TM22, high-affini 100.0 3.5E-82 1.2E-86 660.4 24.5 302 87-392 21-330 (353)
16 1taz_A Calcium/calmodulin-depe 100.0 1.2E-79 3.9E-84 643.7 19.8 298 87-391 19-362 (365)
17 1so2_A CGMP-inhibited 3',5'-cy 100.0 3.3E-78 1.1E-82 641.8 23.4 281 87-369 20-358 (420)
18 3cit_A Sensor histidine kinase 99.1 6.8E-11 2.3E-15 110.1 8.1 63 8-72 86-148 (160)
19 3dba_A CONE CGMP-specific 3',5 99.1 3.5E-11 1.2E-15 112.1 5.6 64 2-67 107-170 (180)
20 2e4s_A CAMP and CAMP-inhibited 98.4 1.7E-07 5.7E-12 85.2 5.8 68 2-72 110-177 (189)
21 2zmf_A CAMP and CAMP-inhibited 98.4 3.2E-07 1.1E-11 83.0 5.8 68 2-72 110-177 (189)
22 1ykd_A Adenylate cyclase; GAF 98.3 6.5E-07 2.2E-11 92.2 5.5 69 2-72 288-377 (398)
23 1mc0_A 3',5'-cyclic nucleotide 98.2 1.7E-06 6E-11 87.6 6.9 69 2-72 270-338 (368)
24 1f5m_A GAF; CGMP binding, sign 98.1 6.3E-06 2.2E-10 77.5 7.4 58 2-66 118-175 (180)
25 1ykd_A Adenylate cyclase; GAF 98.0 1.5E-06 5.2E-11 89.4 1.7 66 4-71 105-184 (398)
26 3mmh_A FRMSR, methionine-R-sul 97.9 1.8E-05 6.2E-10 73.8 6.7 57 2-66 102-158 (167)
27 2w3g_A DOSS, two component sen 97.8 2.7E-05 9.1E-10 67.5 6.7 66 2-72 81-146 (153)
28 1vhm_A Protein YEBR; structura 97.8 3.4E-05 1.2E-09 73.8 7.5 61 2-71 113-173 (195)
29 3oov_A Methyl-accepting chemot 97.8 2.9E-05 1E-09 68.6 6.0 59 11-72 105-163 (169)
30 2vjw_A GAF-B, GAF family prote 97.7 4.9E-05 1.7E-09 68.6 6.9 53 17-72 83-135 (149)
31 3bjc_A CGMP-specific 3',5'-cyc 97.7 4.8E-06 1.6E-10 96.0 0.0 69 2-71 250-319 (878)
32 3o5y_A Sensor protein; GAF dom 97.7 5E-05 1.7E-09 70.1 6.7 55 14-72 90-144 (165)
33 3rfb_A Putative uncharacterize 97.7 8.2E-05 2.8E-09 69.9 7.6 58 2-67 102-159 (171)
34 2k2n_A Sensor protein, SYB-CPH 97.6 2.9E-05 9.9E-10 70.7 4.1 65 3-71 103-167 (172)
35 3e0y_A Conserved domain protei 97.6 0.0001 3.4E-09 65.7 7.6 65 2-71 102-166 (181)
36 3hcy_A Putative two-component 97.6 3.6E-05 1.2E-09 67.5 4.6 67 2-72 74-140 (151)
37 3trc_A Phosphoenolpyruvate-pro 97.6 0.00012 4.3E-09 64.6 7.5 66 2-72 97-162 (171)
38 1mc0_A 3',5'-cyclic nucleotide 97.6 3E-05 1E-09 78.5 3.5 58 8-66 104-162 (368)
39 3ksh_A Putative uncharacterize 97.6 0.00011 3.8E-09 68.2 6.8 56 2-65 101-156 (160)
40 2lb5_A Sensor histidine kinase 97.5 6.1E-05 2.1E-09 70.4 4.9 59 9-71 139-197 (208)
41 3k2n_A Sigma-54-dependent tran 97.5 8.2E-05 2.8E-09 66.6 5.2 55 14-72 113-167 (177)
42 3ibj_A CGMP-dependent 3',5'-cy 97.5 3.4E-05 1.2E-09 86.3 2.7 58 9-67 105-163 (691)
43 3ci6_A Phosphoenolpyruvate-pro 97.4 0.00029 9.9E-09 61.4 6.7 63 3-71 100-163 (171)
44 3p01_A Two-component response 97.3 6.6E-05 2.3E-09 68.8 2.3 53 16-72 128-180 (184)
45 2qyb_A Membrane protein, putat 96.6 0.0024 8.1E-08 57.3 5.6 52 18-72 107-159 (181)
46 3eea_A GAF domain/HD domain pr 95.6 0.016 5.6E-07 52.3 5.9 51 19-72 107-157 (162)
47 4glq_A Methyl-accepting chemot 95.2 0.028 9.7E-07 51.7 6.4 57 13-72 99-155 (171)
48 3djb_A Hydrolase, HD family; a 94.8 0.063 2.2E-06 52.1 8.0 93 128-255 8-101 (223)
49 3dto_A BH2835 protein; all alp 94.7 0.13 4.4E-06 50.0 9.6 93 127-254 7-100 (223)
50 3b57_A LIN1889 protein; Q92AN1 94.4 0.18 6.2E-06 47.9 10.0 80 140-254 21-100 (209)
51 2hek_A Hypothetical protein; p 94.2 0.053 1.8E-06 56.6 6.0 70 110-196 27-96 (371)
52 3irh_A HD domain protein; phos 93.9 0.041 1.4E-06 59.2 4.6 76 109-196 62-146 (480)
53 2pjq_A Uncharacterized protein 93.7 0.15 5.2E-06 49.4 8.0 89 132-255 17-106 (231)
54 3u1n_A SAM domain and HD domai 93.0 0.087 3E-06 57.3 5.3 56 141-196 61-120 (528)
55 4eu0_A PELD; C-DI-GMP, signali 92.8 0.12 4.1E-06 52.4 5.7 49 16-66 100-148 (298)
56 2w1r_A Spovt, stage V sporulat 92.3 0.21 7.1E-06 43.8 6.0 45 17-65 74-118 (123)
57 2q14_A Phosphohydrolase; BT420 92.3 0.12 4.2E-06 54.6 5.3 73 143-226 53-127 (410)
58 2qgs_A Protein Se1688; alpha-h 92.2 0.44 1.5E-05 45.9 8.7 79 140-254 21-100 (225)
59 2pgs_A Putative deoxyguanosine 92.2 0.13 4.6E-06 54.9 5.5 85 141-226 58-163 (451)
60 2pq7_A Predicted HD superfamil 91.0 0.26 9E-06 47.0 5.6 48 134-188 22-70 (220)
61 3bg2_A DGTP triphosphohydrolas 90.6 0.22 7.5E-06 53.2 5.1 86 140-226 59-170 (444)
62 2dqb_A Deoxyguanosinetriphosph 88.9 0.87 3E-05 47.6 7.9 72 143-226 73-145 (376)
63 2o08_A BH1327 protein; putativ 84.5 0.56 1.9E-05 43.6 3.3 76 144-226 18-94 (188)
64 3gw7_A Uncharacterized protein 84.5 0.25 8.6E-06 48.4 0.9 43 140-189 21-63 (239)
65 3ccg_A HD superfamily hydrolas 82.8 1.6 5.3E-05 40.6 5.6 86 123-226 4-96 (190)
66 2ogi_A Hypothetical protein SA 76.5 1.8 6.2E-05 40.5 3.8 71 144-226 26-102 (196)
67 3tm8_A BD1817, uncharacterized 68.6 11 0.00037 38.1 7.7 50 142-195 164-214 (328)
68 3kq5_A Hypothetical cytosolic 64.3 6.6 0.00022 41.1 5.0 40 147-189 78-118 (393)
69 3i7a_A Putative metal-dependen 44.1 12 0.00042 36.5 3.0 45 145-189 118-162 (281)
70 2w1t_A Spovt, stage V sporulat 36.7 57 0.0019 30.4 6.1 42 19-64 131-172 (178)
71 1p0z_A Sensor kinase CITA; tra 36.4 25 0.00084 30.0 3.4 18 22-39 104-121 (131)
72 3b47_A GSU0582, methyl-accepti 34.9 27 0.00092 30.5 3.4 24 21-44 94-126 (134)
73 3by8_A Sensor protein DCUS; hi 32.2 31 0.0011 30.0 3.4 18 22-39 109-126 (142)
74 4dah_A Sporulation kinase D; a 31.2 33 0.0011 31.1 3.5 31 11-42 118-148 (217)
75 3hc1_A Uncharacterized HDOD do 30.2 23 0.00079 35.0 2.5 42 146-193 120-161 (305)
76 2o99_A Acetate operon represso 29.5 89 0.003 28.0 6.1 32 20-54 127-158 (182)
77 2qkp_A Uncharacterized protein 29.1 40 0.0014 29.6 3.6 23 20-42 107-129 (151)
78 1tf1_A Negative regulator of a 26.9 1E+02 0.0035 28.1 6.1 32 20-54 143-174 (198)
79 1ysp_A Transcriptional regulat 26.1 1E+02 0.0036 27.4 5.9 32 20-54 123-154 (181)
80 1vqr_A Hypothetical protein CJ 25.6 35 0.0012 33.5 2.8 41 145-191 125-165 (297)
81 3obf_A Putative transcriptiona 24.5 99 0.0034 27.4 5.5 32 20-54 122-153 (176)
82 3mxq_A Sensor protein; PSI2, M 24.4 75 0.0026 27.9 4.5 27 16-42 117-143 (152)
83 3szt_A QCSR, quorum-sensing co 23.4 2.2E+02 0.0074 26.7 7.9 119 15-150 107-227 (237)
84 3rf0_A Exopolyphosphatase; str 22.2 51 0.0018 30.9 3.1 57 128-188 7-65 (209)
85 3kpb_A Uncharacterized protein 21.6 52 0.0018 26.6 2.7 20 19-38 91-110 (122)
86 3ljx_A MMOQ response regulator 21.2 41 0.0014 33.0 2.3 39 146-190 110-148 (288)
87 3lif_A Putative diguanylate cy 20.4 69 0.0024 29.6 3.6 22 20-41 128-149 (254)
88 2cqz_A 177AA long hypothetical 20.2 58 0.002 29.7 2.9 45 141-187 29-73 (177)
No 1
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=100.00 E-value=3.8e-93 Score=799.76 Aligned_cols=386 Identities=38% Similarity=0.718 Sum_probs=341.8
Q ss_pred CCCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc--------------
Q psy8796 1 MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT-------------- 66 (536)
Q Consensus 1 ~~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~-------------- 66 (536)
+.||||.+.+|..+||.+||+||+||...+|+++||+++.|+.++. +|+++|++++..++.+.|.
T Consensus 269 ~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~-~f~~~d~~ll~~lA~~~aiAIena~l~~~l~~~ 347 (691)
T 3ibj_A 269 YAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGP-WFSKFDEDLATAFSIYCGISIAHSLLYKKVNEA 347 (691)
T ss_dssp TTSTTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSS-SCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999997558999999999999876 8999999765444433333
Q ss_pred ----------------ccCccccchhcccCCccccc--cccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHH
Q psy8796 67 ----------------ASGEDTRKLIKDTIPSAQVY--NLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLC 128 (536)
Q Consensus 67 ----------------~~~e~~~kLl~~~ip~~~~~--~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~ 128 (536)
++.+++.+++...+|....+ ++..|+|+++++++++++.+++.||.++|++++|+|+.++|.
T Consensus 348 ~~~~~~~~e~l~~~~~~~~~e~~~ll~~~i~~~~~~~~~~~~f~f~~~~l~~~~~~~~~~~~f~~~~~~~~~~i~~~~l~ 427 (691)
T 3ibj_A 348 QYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLA 427 (691)
T ss_dssp HHHHHHHHHHTTTCCCCCHHHHHHHCSSCCCCSTTTCTTTTSTTCCGGGSCSSSHHHHHHHHHHHTTCTTTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHhcCCCchhhhhhhccccccCCcCCCchHHHHHHHHHHHHcCchHhcCCCHHHHH
Confidence 33333445556678887766 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcC
Q psy8796 129 RWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT 208 (536)
Q Consensus 129 ~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn 208 (536)
+|+..|+++|++||||||.||+||+|++|++++.+++..+|+++|++|+++||+|||+||||+||.|++++++|||++||
T Consensus 428 ~fl~~v~~~y~~~pyHN~~Ha~dv~q~~~~~~~~~~~~~~~~~~e~~a~~~aa~~HD~~H~G~~N~f~~~~~~~la~~y~ 507 (691)
T 3ibj_A 428 RFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYS 507 (691)
T ss_dssp HHHHHHHHTSBCCSSSBHHHHHHHHHHHHHHHHHHTGGGTSCHHHHHHHHHHHHHTTTTCCCCCCSCSSSSSCCGGGTTT
T ss_pred HHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHhccchhhhCCHHHHHHHHHHHHHccCCCCCCCcHHHHHhCChHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -C-CccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q psy8796 209 -T-STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLL 286 (536)
Q Consensus 209 -~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~ll 286 (536)
+ |||||||++.+++||++++||||++|++++++.+|++|+++||||||++||+++++|+++.+. .+++.++++|.++
T Consensus 508 ~d~svlE~~h~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~ilaTDm~~h~~~~~~~~~~~~~-~~~~~~~~~~~~~ 586 (691)
T 3ibj_A 508 SEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQKMAEV-GYDRNNKQHHRLL 586 (691)
T ss_dssp CSSSHHHHHHHHHHHHHHTSTTTCTTTTSCHHHHHHHHHHHHHHHHHTCHHHHHHHHTHHHHHHHS-CCCSSCHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhC-CCCCCCHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999999999999988765 5899999999999
Q ss_pred HHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHh
Q psy8796 287 CGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT 366 (536)
Q Consensus 287 l~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~ 366 (536)
++++||||||||++|||+++++|+.++++|||+|||+||. ++.+|+|+|||++ ..+|++|+|||++||+|||++++++
T Consensus 587 ~~~~~~~aDis~~~~~~~~~~~w~~~~~~Ef~~qgd~e~~-~g~~~~~~~dr~~-~~~~~~q~~Fi~~~~~Pl~~~~~~~ 664 (691)
T 3ibj_A 587 LCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEKA-MGNRPMEMMDREK-AYIPELQISFMEHIAMPIYKLLQDL 664 (691)
T ss_dssp HHHHHHHHHTGGGTSCHHHHHHHHHHHHHHSSCCSSTTTC------------CC-TTHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred HHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHhHHHh-cCCCCCcccCccc-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999994 6777888999985 6899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHH
Q psy8796 367 FPWIQPLYDGTYENRKHWQDLAEK 390 (536)
Q Consensus 367 ~P~l~~l~~~l~~N~~~W~~l~e~ 390 (536)
+|+++++++++++|+++|+++.++
T Consensus 665 ~p~~~~~~~~~~~N~~~W~~~~~~ 688 (691)
T 3ibj_A 665 FPKAAELYERVASNREHWTKVSHL 688 (691)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHC-
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999764
No 2
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=100.00 E-value=1.5e-89 Score=714.51 Aligned_cols=330 Identities=51% Similarity=0.914 Sum_probs=311.2
Q ss_pred HhHhhhcccCccccchh---cccCCccccccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHH
Q psy8796 60 CLSYHATASGEDTRKLI---KDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKK 136 (536)
Q Consensus 60 ~~s~~a~~~~e~~~kLl---~~~ip~~~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~ 136 (536)
-++||+.++.|+++++. ...+|+....++.+|+|++|++++.+++++++.||.++|+++.|+|+.++|.+||..|++
T Consensus 13 ~~~yh~~~~~~e~~~l~~~~~~~lp~~~~~~l~~w~Fd~~~l~~~~~~~~~~~~f~~~~l~~~f~i~~~~L~~fl~~v~~ 92 (347)
T 1tbf_A 13 GLVPRGSHMEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKK 92 (347)
T ss_dssp ---------CHHHHHHHHHHHSCCCCHHHHTTTCTTCCCTTCCHHHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccchhccCCHHHHHHHhhcccccCChhhhcCCCCCCCCcccCCchhHHHHHHHHHHHCChHhhcCCCHHHHHHHHHHHHH
Confidence 37899999999999998 478999888999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-Ccccc
Q psy8796 137 NYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEH 214 (536)
Q Consensus 137 ~Y~-~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEn 214 (536)
+|+ +||||||.||+||+|++|+++..+++...|+++|++|+++||+|||+||||+||+|++++++|||++||+ |||||
T Consensus 93 ~Y~~~npYHN~~HA~dV~q~~~~ll~~~~l~~~l~~le~~alliAAl~HDv~HpG~~N~fli~~~s~LA~lYnd~SvLEn 172 (347)
T 1tbf_A 93 NYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEH 172 (347)
T ss_dssp TSCTTSSSSSHHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHH
T ss_pred hcCCCCCCcCHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHccCCCCCCCCchHHhcCCHHHHHcCCCcHHHH
Confidence 999 6999999999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred chhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhc
Q psy8796 215 HHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTAC 294 (536)
Q Consensus 215 hH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaA 294 (536)
||++.+++||+++++|||.+|++++++.+|++|+++||||||++||+++++|++++++|.++|.++++|.++++++||||
T Consensus 173 hH~a~a~~iL~~~~~ni~~~l~~~~~~~~r~~ii~~ILATDM~~Hf~~~~~~~~~~~~~~~~~~~~~~r~ll~~~iik~A 252 (347)
T 1tbf_A 173 HHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTAC 252 (347)
T ss_dssp HHHHHHHHHHHSTTCCTTTTSCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccchhhcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHH
Q psy8796 295 DVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLY 374 (536)
Q Consensus 295 DiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~ 374 (536)
||||++|||+++++|+.+|++|||+|||+||..++.+|+|+|||++...+|++|+|||++||+|||+++++++|++++++
T Consensus 253 Dis~~~rp~~~~~~W~~~l~eEF~~Qgd~Ek~~Lgl~~sp~~DR~~~~~~~k~QigFi~~iv~Pl~~~l~~~~p~~~~~~ 332 (347)
T 1tbf_A 253 DLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLL 332 (347)
T ss_dssp HTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGCGGGGGGHHHHHHHHHHHTHHHHHHHHHHHCGGGHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCcccccccHHHHHHHHHHHHHHHHHHHHHHChhhHHHH
Confidence 99999999999999999999999999999995457788899999977789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8796 375 DGTYENRKHWQDLAE 389 (536)
Q Consensus 375 ~~l~~N~~~W~~l~e 389 (536)
+++++|+++|+++++
T Consensus 333 ~~~~~N~~~W~~l~~ 347 (347)
T 1tbf_A 333 DGCRKNRQKWQALAE 347 (347)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999863
No 3
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=100.00 E-value=5.3e-90 Score=794.24 Aligned_cols=392 Identities=47% Similarity=0.849 Sum_probs=291.2
Q ss_pred CCCCCCCccccccCC---ceeeeeEEeeeecCC-CcEEEEEEEEecCCC-----CCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 1 MVDPRFNNEIDRRTG---YTTNSILCVPINSYE-GEVIGVAQIINKTDG-----TSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 1 ~~dprF~~~~D~~tg---y~TrSiLc~Pi~~~~-~~vIGViqliNK~~~-----~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
+.||||.+.+|..+| |.+||+||+||.+.+ |+||||++++|+.++ . +|+++|++++..++.+.|. ++++
T Consensus 431 ~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~~G~~~-~Ft~~d~~lL~~lA~~aai-AIen 508 (878)
T 3bjc_A 431 SKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVK-PFNRNDEQFLEAFVIFCGL-GIQN 508 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCcccCCC-CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 368999999999999 999999999999865 899999999999875 4 7999999876554444433 4433
Q ss_pred c-------------------------------cchh---cccCCccccccccceeeecCCCCchhhhHHHHHhhhhhchh
Q psy8796 72 T-------------------------------RKLI---KDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLV 117 (536)
Q Consensus 72 ~-------------------------------~kLl---~~~ip~~~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~ 117 (536)
+ .++. ...+|.....++.+|+|++|++++.+++.+++.||.++|++
T Consensus 509 arl~e~l~~~~~~~~~a~e~Ls~~~~~~~ee~~~l~~~l~~~lp~~~~~~~~~~~Fd~f~l~~~e~~~~~~~~f~~~~~~ 588 (878)
T 3bjc_A 509 TQMYEAVERAMAKQMVTLEVLSYHASAAEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLV 588 (878)
T ss_dssp -----------------------------CCHHHHHHHHHSCCCCHHHHTTTCTTCCCTTCCHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhhhHhhhhhhhhcCCHHHHHHhcccccccCCchhhhccccccceeeecCchhHHHHHHHHHHHCChh
Confidence 2 1111 23577776778999999999999999999999999999999
Q ss_pred hhcccCHHHHHHHHHHHHHcCC-CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCcccc
Q psy8796 118 KQFHIPYDVLCRWVLSVKKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQ 196 (536)
Q Consensus 118 ~~f~I~~~~L~~Fl~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fl 196 (536)
+.|+|+.++|.+||..|+++|+ +||||||.||+||+|++|++|..+++...|+++|++|+++||+|||+||||+||.|+
T Consensus 589 ~~f~i~~~~l~~fl~~v~~~Y~~~~pyHN~~Ha~dV~q~~~~~l~~~~~~~~~~~~e~~a~~~aa~~HD~~HpG~~N~f~ 668 (878)
T 3bjc_A 589 QNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYI 668 (878)
T ss_dssp HHTTCCHHHHHHHHHHHHHTSCTTSSSSSHHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCCTTCCTG
T ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHhccchhhcCCHHHHHHHHHHHHHccCCCCCCCCHHH
Confidence 9999999999999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCCccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCC
Q psy8796 197 TKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFD 276 (536)
Q Consensus 197 i~t~spLAilYn~SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d 276 (536)
+++++|||++|+.|||||||++.+++||++++||||.+|++++++.+|++|+++||||||++||+++++|+++++.+.++
T Consensus 669 ~~~~~~la~~y~~svlE~~h~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~i~~~ILaTDm~~h~~~~~~~~~~~~~~~~~ 748 (878)
T 3bjc_A 669 QRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFN 748 (878)
T ss_dssp GGSSCTTHHHHCTTHHHHHHHHHHHHHHTSTTCCTTTTSCHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HhcCCHHHHHcCchHHHHHHHHHHHHHHhCccCchhhcCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhH
Q psy8796 277 WQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVIC 356 (536)
Q Consensus 277 ~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv 356 (536)
|.++++|.++++++||||||||++|||+++++|+.+|++|||.|||+||..++.+|+|+|||++.+.+|++|+|||++||
T Consensus 749 ~~~~~~~~~~~~~~~~~aDis~~~~~~~~~~~w~~~~~~Ef~~qgd~e~~~lg~~~~~~~dr~~~~~~~~~Q~~Fi~~~~ 828 (878)
T 3bjc_A 749 LEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAIC 828 (878)
T ss_dssp TTSHHHHHHHHHHHHHHHHTGGGGSCHHHHHHHHHHHHHHHHSCTTCC---------------HHHHHHHHHHHHHHHTH
T ss_pred CCChHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCccccccchHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999985346778889999876789999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Q psy8796 357 LPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMG 394 (536)
Q Consensus 357 ~Plf~~l~~~~P~l~~l~~~l~~N~~~W~~l~e~~e~~ 394 (536)
+|||+++++++|+++++++++++|+++|+++.++.+.+
T Consensus 829 ~Pl~~~~~~~~~~~~~~~~~~~~N~~~w~~~~~~~~~~ 866 (878)
T 3bjc_A 829 LQLYEALTHVSEDCFPLLDGCRKNRQKWQALAEQQEKM 866 (878)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876654
No 4
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=100.00 E-value=8.7e-89 Score=707.57 Aligned_cols=324 Identities=38% Similarity=0.740 Sum_probs=307.1
Q ss_pred hcccCccccchhcccCCcccc--ccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCC
Q psy8796 65 ATASGEDTRKLIKDTIPSAQV--YNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVK 142 (536)
Q Consensus 65 a~~~~e~~~kLl~~~ip~~~~--~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~p 142 (536)
++|+.+++++++...||.... +++.+|+|+++++++++++.+++.||.++|++++|+|+.++|.+|+..|+++|++||
T Consensus 1 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~~~~l~~~e~~~~~~~mf~~~~l~~~f~i~~~~L~~Fl~~v~~~Y~~np 80 (345)
T 3itu_A 1 GSAMDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPP 80 (345)
T ss_dssp ----CHHHHHHHHSCCCCGGGTCTTTTSTTCCGGGSCGGGHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHTCCCCS
T ss_pred CCCCHHHHHHHHhcCCCChhhccCCcCeeeecCCCCCchHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHccCCCC
Confidence 357888899999999998664 479999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcC-C-CccccchhHHH
Q psy8796 143 YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-T-STMEHHHFDQC 220 (536)
Q Consensus 143 YHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn-~-SVLEnhH~a~~ 220 (536)
||||.||+||+|++|+++..+++...|+++|++|+++||+|||+||||+||.|++++++|||++|| + |||||||++.+
T Consensus 81 YHN~~HA~dV~q~~~~ll~~~~l~~~l~~le~~alliAal~HDv~HpG~nN~fli~t~s~LA~lYn~d~SVLEnhH~a~~ 160 (345)
T 3itu_A 81 YHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQA 160 (345)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHCGGGTSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHHTTTSCHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHhcCCCCCCCCHHHHhcCCHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6 99999999999
Q ss_pred HHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCC
Q psy8796 221 VMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIA 300 (536)
Q Consensus 221 ~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~ 300 (536)
++||+++++|||++|++++++.+|++|+++||||||++||+++++|+++.+.| +++.++++|.++++++||||||||++
T Consensus 161 ~~lL~~~~~nif~~l~~~~~~~~r~~ii~~ILATDm~~Hf~~~~~~~~~~~~~-~~~~~~~~r~lll~~lik~aDiSn~~ 239 (345)
T 3itu_A 161 IAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQT 239 (345)
T ss_dssp HHHHTSTTCCTTTTSCHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHC-CCTTCHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHhccccchhhccCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999887654 88999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy8796 301 KPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYEN 380 (536)
Q Consensus 301 Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~~~l~~N 380 (536)
|||+++++|+.+|++|||+|||+||. ++.+|+|+|||++ ..+|++|+|||++||+|||+++++++|+++++++++++|
T Consensus 240 rp~~v~~~Wa~~l~eEFf~QgD~Ek~-~gl~~sp~~DR~~-~~~~k~QigFi~~iv~Plf~~l~~~~p~~~~~l~~l~~N 317 (345)
T 3itu_A 240 KGWKTTRKIAELIYKEFFSQGDLEKA-MGNRPMEMMDREK-AYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASN 317 (345)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCCGGGCTTT-CCHHHHHHHHHHHTHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhHHHHHh-cCCCCCccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999994 6777888999986 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8796 381 RKHWQDLAEKV 391 (536)
Q Consensus 381 ~~~W~~l~e~~ 391 (536)
+++|+++.+++
T Consensus 318 ~~~W~~l~~~~ 328 (345)
T 3itu_A 318 REHWTKVSHKF 328 (345)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 5
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=100.00 E-value=4e-89 Score=707.75 Aligned_cols=331 Identities=37% Similarity=0.704 Sum_probs=311.5
Q ss_pred HhhhcccCccccchhcccCCccccccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCC
Q psy8796 62 SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPV 141 (536)
Q Consensus 62 s~~a~~~~e~~~kLl~~~ip~~~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~ 141 (536)
+||+.|+.+++++|.+..+|+....++.+|+|+++++++ ..+++.||..+|+++.|+|+.++|.+||..|+++|++|
T Consensus 1 ~yh~~~~~~e~~~l~~~~~~~~~~~~~~~w~F~~~~l~~---~~~~~~~f~~~~l~~~f~i~~~~L~~fl~~v~~~Y~~n 77 (331)
T 2our_A 1 SHMSICTSEEWQGLMQFTLPVRLCKEIELFHFDIGPFEN---MWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRV 77 (331)
T ss_dssp -CCCCCCHHHHHHHTTCCCCHHHHHHTTSTTCCCGGGGG---GHHHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHTSCSC
T ss_pred CCccccCHHHHHHHHhcCCcHHHHcCcCcCCCCcccccH---HHHHHHHHHHcCHHHhcCCCHHHHHHHHHHHHHhcCCC
Confidence 589999999999999999998877899999999999877 35778899999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHHH
Q psy8796 142 KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCV 221 (536)
Q Consensus 142 pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~~ 221 (536)
|||||.||+||+|++|+++..+ ...|+++|++|+++||+|||+||||+||.|++++++|||++||+|||||||++.++
T Consensus 78 pYHN~~HA~dV~q~~~~ll~~~--~~~l~~le~~alliAAl~HDv~HpG~~N~fli~~~~~LA~lYndSvLE~hH~a~a~ 155 (331)
T 2our_A 78 PYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTV 155 (331)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTT--GGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHSCSSHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHHHccCCCCCCCCcHHHhcCCHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999887 56799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCC
Q psy8796 222 MILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301 (536)
Q Consensus 222 ~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~R 301 (536)
+||+++++|||++|++++++.+|++|+++||||||++||+++++|+++++.|++++.++++|.++++++||||||||++|
T Consensus 156 ~iL~~~~~nif~~l~~~~~~~~r~~ii~~ILATDm~~Hf~~~~~~~~~~~~~~~~~~~~~~r~lll~~lik~ADis~~~r 235 (331)
T 2our_A 156 SILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACALCSVTK 235 (331)
T ss_dssp HHHTSTTCCTTTTSCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHTGGGGS
T ss_pred HHHhccccchhccCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy8796 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENR 381 (536)
Q Consensus 302 p~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~~~l~~N~ 381 (536)
||+++++|+.+|++|||+|||+|| .++.+|+|+|||++...+|++|+|||++||+|||+++++++|+++++++++++|+
T Consensus 236 p~~~~~~W~~~l~~Ef~~Qgd~E~-~lgl~~sp~~DR~~~~~~~k~QigFi~~vv~Pl~~~l~~~~p~~~~~~~~l~~N~ 314 (331)
T 2our_A 236 LWPVTKLTANDIYAEFWAEGDEMK-KLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDNL 314 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCGGGCGGGGGGHHHHHHHHHHHTHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 999999999999999999999999 4678888999999765699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcccc
Q psy8796 382 KHWQDLAEKVEMGLTWID 399 (536)
Q Consensus 382 ~~W~~l~e~~e~~~~~~~ 399 (536)
++|++++++.++ .||++
T Consensus 315 ~~W~~~~~~~~~-~~~~~ 331 (331)
T 2our_A 315 SQWEKVIRGEET-ATWIS 331 (331)
T ss_dssp HHHHHHHHTCC-------
T ss_pred HHHHHHHhCCcc-ccCCC
Confidence 999999987666 77863
No 6
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Probab=100.00 E-value=3.6e-88 Score=709.05 Aligned_cols=336 Identities=36% Similarity=0.689 Sum_probs=291.8
Q ss_pred hHhhhcccCccccchhcccCCccccccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCC
Q psy8796 61 LSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP 140 (536)
Q Consensus 61 ~s~~a~~~~e~~~kLl~~~ip~~~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~ 140 (536)
--+++.++.++..+++...||.....++.+|+|++|++++.. .++.+|..+|++++|+|+.++|.+||..|+++|++
T Consensus 31 ~~~~~~~~~~e~~~~~~~~lp~~~~~~i~~~~Fd~f~l~~~~---~~~~~~~~~~l~~~f~I~~~~L~~Fl~~v~~~Y~~ 107 (380)
T 3hr1_A 31 PRGSAMGTSEEWQGLMHFNLPARICRDIELFHFDIGPFENMW---PGIFVYMIHRSCGTSCFELEKLCRFIMSVKKNYRR 107 (380)
T ss_dssp ------------------CCCHHHHHHTTSTTCCCCSCGGGH---HHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHTSCC
T ss_pred CcccCCCCHHHHHHHHHccCChhhhccCCcccCCCchHHHHH---HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHccCC
Confidence 457888899999999999999887778999999999996543 23447888899999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHH
Q psy8796 141 VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQC 220 (536)
Q Consensus 141 ~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~ 220 (536)
||||||.||+||+|++|++|..+ ...|+++|++|+++||+|||+||||+||.|++++++|||++||+|||||||++.+
T Consensus 108 npYHN~~HA~dV~q~~~~ll~~~--~~~lt~le~~alliAAl~HDvdHpG~nN~Fli~t~s~LA~lYndSVLEnhH~a~~ 185 (380)
T 3hr1_A 108 VPYHNWKHAVTVAHCMYAILQNN--NGLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQT 185 (380)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHTS--TTTSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHHTCHHHHHCSSSHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHHHccCCCCCCCCHHHHHhCCHHHHHcCCcHHHHHHHHHH
Confidence 99999999999999999999877 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCC
Q psy8796 221 VMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIA 300 (536)
Q Consensus 221 ~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~ 300 (536)
++||+++++|||++|+.++++.+|++|+++||||||++||+++++|+++++.|.++|.++++|.++++++||||||||++
T Consensus 186 ~~lL~~~~~nif~~L~~~e~~~~r~~ii~~ILATDMa~Hf~~~~~~~~~~~~~~~~~~~~~~r~lll~llik~ADISn~~ 265 (380)
T 3hr1_A 186 VSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVT 265 (380)
T ss_dssp HHHHTSTTCCTTTTSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHccCCccccccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy8796 301 KPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYEN 380 (536)
Q Consensus 301 Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~~~l~~N 380 (536)
|||+++++|+.+|++|||+|||+|| .++.+|+|+|||++...+|++|+|||++||+|||+++++++|+++++++++++|
T Consensus 266 rp~~v~~~Wa~~l~eEFf~QGD~Ek-~lgl~~sp~~DR~~~~~~~ksQigFid~iv~PLf~~l~~~~p~~~~ll~~l~~N 344 (380)
T 3hr1_A 266 KLWPVTKLTANDIYAEFWAEGDEMK-KLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 344 (380)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCGGGCGGGGGGHHHHHHHHHHHTHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhhhHHH-hcCCCCCCCcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999 467888899999976789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCccccCCCC
Q psy8796 381 RKHWQDLAEKVEMGLTWIDHDKI 403 (536)
Q Consensus 381 ~~~W~~l~e~~e~~~~~~~~~~~ 403 (536)
+++|+++++. |+..+|++++..
T Consensus 345 ~~~W~~l~~~-~~~~~~~~~~~~ 366 (380)
T 3hr1_A 345 LNQWEKVIRG-EETAMWISGPAT 366 (380)
T ss_dssp HHHHHHHHC--------------
T ss_pred HHHHHHHHhc-cccccccCCCcc
Confidence 9999999884 567889987733
No 7
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A*
Probab=100.00 E-value=9.5e-86 Score=680.84 Aligned_cols=304 Identities=29% Similarity=0.519 Sum_probs=290.8
Q ss_pred cccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhch
Q psy8796 85 VYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGK 164 (536)
Q Consensus 85 ~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~ 164 (536)
.-.+.+|+|++|.+++.+++++++.||.++|++++|+||.++|.+|+..|+++|++||||||.||+||+|++|+++..++
T Consensus 16 ~~~l~~~~Fd~~~~~~~~~~~~~~~mF~~~~l~~~f~i~~~~L~~fl~~v~~~Y~~npYHN~~Ha~dV~q~~~~~l~~~~ 95 (329)
T 3dyn_A 16 IEALRKPTFDVWLWEPNEMLSCLEHMYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCS 95 (329)
T ss_dssp HHHTTSTTCCGGGCCHHHHHHHHHHHHHHTTHHHHHTCCHHHHHHHHHHHHHHSCCCSSSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCcccCCcchHHHHHHHHHHHCCchHhcCCCHHHHHHHHHHHHHhcCCCCCcCcHHHhHHHHHHHHHHHhhh
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHHHHHH
Q psy8796 165 MERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIV 243 (536)
Q Consensus 165 l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~ 243 (536)
+...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++||+++++|||.+|++++++.+
T Consensus 96 l~~~l~~le~~alliAal~HDv~HpG~nN~fli~t~s~LA~lYnd~SvLEnhH~a~~~~lL~~~~~nif~~l~~~~~~~~ 175 (329)
T 3dyn_A 96 LQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQI 175 (329)
T ss_dssp HHHHSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHHHHHHHTSGGGCTTTTSCHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHhCCHHHHHcCCCcHhHHHHHHHHHHHHhcccchhccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhH
Q psy8796 244 MKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDL 323 (536)
Q Consensus 244 r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~ 323 (536)
|++|+++||||||++||+++++|++.++ .+++.++++|.++++++||||||||++|||+++++|+.+|++|||+|||+
T Consensus 176 r~~ii~~ILATDm~~Hf~~l~~~~~~~~--~~~~~~~~~~~ll~~~lik~ADiSn~~rp~~v~~~W~~~l~eEFf~QgD~ 253 (329)
T 3dyn_A 176 RQGMITLILATDMARHAEIMDSFKEKME--NFDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDR 253 (329)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHT--TCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHh--hcccCCHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999886 47888999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHh
Q psy8796 324 EKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQ-PLYDGTYENRKHWQDLAEKVE 392 (536)
Q Consensus 324 Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~-~l~~~l~~N~~~W~~l~e~~e 392 (536)
||. ++.+|+|+|||++ ..+|++|+|||++||+|||+++++++|+++ ++++.+++|+++|+++++..+
T Consensus 254 Ek~-~glp~sp~~DR~~-~~~~k~QigFi~~iv~Pl~~~l~~~~P~~~~~~l~~L~~Nr~~w~~l~~~~~ 321 (329)
T 3dyn_A 254 EKS-EGLPVAPFMDRDK-VTKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDD 321 (329)
T ss_dssp HHH-HTCCCCGGGCTTT-CCHHHHHHHHHHHTHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-cCCCCCCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 984 4666778999986 579999999999999999999999999998 689999999999999998765
No 8
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=100.00 E-value=4.8e-85 Score=683.37 Aligned_cols=328 Identities=30% Similarity=0.515 Sum_probs=304.6
Q ss_pred hHhhhcccCccccchhcccCCccccccccceeeecCCCCc---hhh---hHHHHHhhhhhchhhhcccCHHHHHHHHHHH
Q psy8796 61 LSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSD---MDT---CRATIRMFLECDLVKQFHIPYDVLCRWVLSV 134 (536)
Q Consensus 61 ~s~~a~~~~e~~~kLl~~~ip~~~~~~l~s~~F~~~~l~~---~el---~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V 134 (536)
-+||+. +.++.++++.-.+|.. .++.+|+|++|++.+ ..+ +.+++.||.++|+++.|+|+.++|.+||..|
T Consensus 14 ~s~~~~-~~~e~~~~~~~~~~~~--~~i~~~~Fd~f~~~~~~~~~L~~~~~~~~~~f~~~~l~~~f~i~~~~L~~Fl~~v 90 (359)
T 2r8q_A 14 VKVIAV-TPEEREAVMSIDFGGA--YDFTSPGFNLFEVREKYSEPMDAAAGVVYNLLWNSGLPEKFGCREQTLLNFILQC 90 (359)
T ss_dssp --CCCC-CHHHHHHHHTCCCTTS--CCTTSTTCCHHHHHHHCSSHHHHHHHHHHHHHHTTSHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHhccCCcc--ccCCCCCCCcccccccCCCchHHHHHHHHHHHHHcCcHHhcCCCHHHHHHHHHHH
Confidence 388984 6777778888777765 488999999997654 244 7888999999999999999999999999999
Q ss_pred HHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC----C
Q psy8796 135 KKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT----S 210 (536)
Q Consensus 135 ~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~----S 210 (536)
+++|++||||||.||+||+|++|++|..+++...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |
T Consensus 91 ~~~Y~~npYHN~~HA~dV~q~~~~ll~~~~l~~~l~~le~~alliAAl~HDv~HpG~nN~fli~~~s~LA~lYnd~~n~S 170 (359)
T 2r8q_A 91 RRRYRRVPYHNFYHVVDVCQTLHTYLYTGKASELLTELECYVLLVTALVHDLDHMGVNNSFYLKTDSPLGILSSASGNNS 170 (359)
T ss_dssp HHTCCSCSSSSHHHHHHHHHHHHHHHHTSCGGGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHHHHHSCCC
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHHHcccchhcccHHHHHHHHHHHHHhcCCCCCCCchHhHhcCCHHHHHcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995 9
Q ss_pred ccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q psy8796 211 TMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMM 290 (536)
Q Consensus 211 VLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~ll 290 (536)
||||||++.+++||+++++|||.+|++++++.+|++|+++||||||++||+++++|+++++ +.+++.++++|.++++++
T Consensus 171 vLE~hH~a~a~~iL~~~~~nif~~l~~~~~~~~r~~ii~~ILATDm~~Hf~~l~~~~~~~~-~~~~~~~~~~r~lll~~l 249 (359)
T 2r8q_A 171 VLEVHHCSLAIEILSDPAADVFEGLSGQDVAYAYRALIDCVLATDMAKHADALSRFTELAT-SGFEKDNDTHRRLVMETL 249 (359)
T ss_dssp HHHHHHHHHHHHHHTSTTTCTTTTSCHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH-HCCCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCcccccCCCHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHhh-cccCcCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887 578999999999999999
Q ss_pred HhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHH-HHHHHhCCC
Q psy8796 291 MTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLY-KVMSDTFPW 369 (536)
Q Consensus 291 lkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf-~~l~~~~P~ 369 (536)
||||||||++|||+++++|+.+|++|||+|||+||. ++.+|+|+|||++...+|++|+|||++||+||| +.+++++|+
T Consensus 250 ik~ADis~~~rp~~~~~~W~~~l~eEF~~Qgd~E~~-lgl~~sp~~DR~~~~~~~k~QigFi~~iv~Pl~~~~~~~~~p~ 328 (359)
T 2r8q_A 250 IKAGDVSNVTKPFETSRMWAMAVTEEFYRQGDMEKE-KGVEVLPMFDRSKNNELARGQIGFIDFVAGKFFRDIVGNLFHG 328 (359)
T ss_dssp HHHHHTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCCGGGCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHTCGG
T ss_pred HHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcCcccccccchhHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999999999999999999999999999999999994 677788899999767899999999999999999 699999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Q psy8796 370 IQPLYDGTYENRKHWQDLAEKVEM 393 (536)
Q Consensus 370 l~~l~~~l~~N~~~W~~l~e~~e~ 393 (536)
++++++++++|+++|+++.++...
T Consensus 329 l~~~~~~l~~N~~~W~~~~~~~~~ 352 (359)
T 2r8q_A 329 MQWCVDTVNSNRAKWQEILDGRRD 352 (359)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999875443
No 9
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A*
Probab=100.00 E-value=2.3e-84 Score=674.34 Aligned_cols=299 Identities=21% Similarity=0.333 Sum_probs=286.6
Q ss_pred ccccceeeecCCC---CchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhh
Q psy8796 86 YNLYSFTFIDFDL---SDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKT 162 (536)
Q Consensus 86 ~~l~s~~F~~~~l---~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~ 162 (536)
.++.+|+||+|++ +...+..+++.||.++|+++.| ++.++|.+|+..|+++|++||||||.||+||+|++|+++..
T Consensus 39 ~~~~~W~fdif~l~~~~~~~L~~v~~~i~~~~~l~~~~-~~~~~L~~fl~~v~~~Y~~npYHN~~HA~dV~q~~~~ll~~ 117 (345)
T 3v93_A 39 VDLRDWGFDTFEVASRVPSVLQSVAMHVALAWDFFASQ-EEAQKWAFLVAAVENNYRPNPYHNAIHAADVLQGTFSLVSA 117 (345)
T ss_dssp CCTTCTTCCHHHHHTTSSCHHHHHHHHHHHHTTCCSSH-HHHHHHHHHHHHHHHTSCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCchhHHHHhcCCcHHHHHHHHHHHcCchhhh-CCHHHHHHHHHHHHHhCCCCCCcChHHHHHHHHHHHHHHHh
Confidence 4788999999964 3456888999999999999999 99999999999999999999999999999999999999999
Q ss_pred ch-hhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHHH
Q psy8796 163 GK-MERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDY 240 (536)
Q Consensus 163 ~~-l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~ 240 (536)
++ +...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++||+++++|||.+|+++++
T Consensus 118 ~~~~~~~l~~le~~alliAAl~HDvdHpG~nN~fli~t~s~LA~lYnd~SVLEnhH~a~~f~lL~~~~~nif~~l~~~~~ 197 (345)
T 3v93_A 118 AKPLMEHLTPLECKAAAFAALTHDVCHPGRTNAFLAAVQDPVSFKFSGKGTLEQLHTATAFELLNVTEFDFTSSMDNASF 197 (345)
T ss_dssp CHHHHHHCCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHSCSSCHHHHHHHHHHHHHHTSTTTCTTTTSCHHHH
T ss_pred chHhhhcCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHccchHHHhcCCCCHHHHHHHHHHHHHhcccccChhccCCHHHH
Confidence 88 889999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhc
Q psy8796 241 RIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQ 320 (536)
Q Consensus 241 ~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~Q 320 (536)
+.+|++|+++||||||++||+++++|+++++.|.+|+.++++|.++++++||||||||++|||+++++|+. +++|||+|
T Consensus 198 ~~~r~~ii~~ILATDM~~Hf~~l~~~~~~~~~~~~d~~~~~~r~lll~~lik~ADiSn~~rp~~v~~~W~~-l~eEFf~Q 276 (345)
T 3v93_A 198 LEFKNIVSHLIGHTDMSLHSETVAKHGAKLSAGGFDCTCKEDRLEALSLLLHAADIGASSRGVAIARKWLV-ILQEFADQ 276 (345)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHHHHHHHHCGGGSCHHHHHHGGG-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhccccCCHHHHHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Q psy8796 321 GDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAE 389 (536)
Q Consensus 321 GD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~~~l~~N~~~W~~l~e 389 (536)
||+||. ++.+++|+|||.+. +|++|+|||++||+|||+++++++|+++++++++++|+++|+++++
T Consensus 277 gD~Ek~-~glp~sp~~DR~~~--~~k~QigFi~~iv~Plf~~l~~~~P~l~~ll~~l~~Nr~~w~~~a~ 342 (345)
T 3v93_A 277 AEDERR-RGLPVTPGFETPSS--VEKSQIPFLDFFVIPTFDLLHQLFPSIEEPLHNLRKLRELYAAKAG 342 (345)
T ss_dssp HHHHHH-HTCCCCTTCSCCSC--HHHHHHHHHHHTHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHh-cCCCCCccccccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhC
Confidence 999984 56677789999864 9999999999999999999999999999999999999999999875
No 10
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=100.00 E-value=4.1e-84 Score=679.54 Aligned_cols=334 Identities=26% Similarity=0.407 Sum_probs=289.7
Q ss_pred cccceeeecCCCCc----hhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCC-CCCCCchhhHHHHHHHHHHHHh
Q psy8796 87 NLYSFTFIDFDLSD----MDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR-PVKYHNWRHALNVAQTMFAMLK 161 (536)
Q Consensus 87 ~l~s~~F~~~~l~~----~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~ 161 (536)
++..|+|+.|.+.+ ..+..+++.||.++|+++.|+|+.++|.+||..|+++|+ +||||||.||+||+|++|+++.
T Consensus 21 ~~~~W~fdif~l~~~~~~~~L~~~~~~if~~~~l~~~f~i~~~~L~~Fl~~v~~~Y~~~npYHN~~HA~dV~q~~~~ll~ 100 (377)
T 1f0j_A 21 DLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLS 100 (377)
T ss_dssp GTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHTSCTTSSSSSHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCceeHhhhcCCCcHHHHHHHHHHHcChHHhcCCCHHHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHHHHHh
Confidence 45677777776543 235566789999999999999999999999999999999 7999999999999999999999
Q ss_pred hchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHHH
Q psy8796 162 TGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDY 240 (536)
Q Consensus 162 ~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~ 240 (536)
.+++...|+++|++|+++||+|||+||||+||+|++++++|||++||+ |||||||++.+++||+++++|||++|+++++
T Consensus 101 ~~~l~~~l~~le~~alliAAl~HDvdHpG~nN~fli~t~s~LA~lYnd~SvLEnhH~a~a~~lL~~~~~nif~~l~~~~~ 180 (377)
T 1f0j_A 101 TPALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFMNLTKKQR 180 (377)
T ss_dssp CGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHGGGSTTCCTTTTSCHHHH
T ss_pred cchhhhhCCHHHHHHHHHHHHHcCCCCCCCCCHHHHhcCCHHHHHcCCCCHHHHHHHHHHHHHHcccccchhccCCHHHH
Confidence 999999999999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC------CCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHH
Q psy8796 241 RIVMKLVENSILSTDLAMYFKKKNRFIQLVENG------EFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVA 314 (536)
Q Consensus 241 ~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~------~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~ 314 (536)
+.+|++|+++||||||++||+++++|+++++.+ .+++.+.++|.++++++||||||||++|||+++++|+.+|+
T Consensus 181 ~~~r~~ii~~ILATDM~~Hf~~l~~~~~~~~~~~~~~~g~~~~~~~~~r~~ll~~lik~ADiS~~~rp~~v~~~W~~~l~ 260 (377)
T 1f0j_A 181 QTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIM 260 (377)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHSCCBCTTSCBCCCSHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHhccccccCChHHHHHHHHHHH
Confidence 999999999999999999999999999998753 45677889999999999999999999999999999999999
Q ss_pred HHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHhc
Q psy8796 315 DEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT-FPWIQPLYDGTYENRKHWQDLAEKVEM 393 (536)
Q Consensus 315 ~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~-~P~l~~l~~~l~~N~~~W~~l~e~~e~ 393 (536)
+|||.|||+||. ++.+|+|+|||++ ..+|++|+|||++||+|||++++++ +|.++++++++++|+++|+++++
T Consensus 261 eEFf~QGD~Er~-~gl~~sp~~DR~~-~~~~k~QigFi~~iv~Plf~~l~~l~~p~~~~~l~~l~~N~~~w~~~~~---- 334 (377)
T 1f0j_A 261 EEFFQQGDKERE-RGMEISPMCDKHT-ASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSMIP---- 334 (377)
T ss_dssp HHHHHHHHHHHH-TTCCCCTTCCTTT-CCHHHHHHHHHHHTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHH-cCCCCCCccCccc-cchHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhh----
Confidence 999999999994 5667778999985 7899999999999999999999997 69999999999999999999853
Q ss_pred cCccccCCCCCcch-HHHhhcCCCCcceeeeeeecCCCCC
Q psy8796 394 GLTWIDHDKIEKPI-EEFADAGGTKDIEFTVTTLNCDKIA 432 (536)
Q Consensus 394 ~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (536)
..+.+.|. .+-+..+++++|+|++|+.+..+..
T Consensus 335 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (377)
T 1f0j_A 335 ------QAPAPPLDEQNRDCQGLMEKFQFELTLDEEDSEG 368 (377)
T ss_dssp ------CCCC------CCSHHHHHHHTCC-----------
T ss_pred ------ccCCCCcccchhccCCCchhhhheechhhccccc
Confidence 22223333 2222334678999999998855543
No 11
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Probab=100.00 E-value=9.2e-83 Score=687.03 Aligned_cols=302 Identities=29% Similarity=0.523 Sum_probs=289.1
Q ss_pred cccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhh
Q psy8796 87 NLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKME 166 (536)
Q Consensus 87 ~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~ 166 (536)
.+..|+||+|.+++.+++.+++.||.++|+++.|+|+.++|.+||..|+.+|++||||||.||+||+|++|+++..+++.
T Consensus 195 ~L~~~~FD~~~~~~~ell~~~~~mF~~~gL~~~f~I~~~~L~rFL~~Ve~~Y~~nPYHN~~HA~DV~Q~~~~ll~~~~l~ 274 (533)
T 3qi3_A 195 ALRKPTFDVWLWEPNEMLSCLEHMYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQ 274 (533)
T ss_dssp HTTSTTCCGGGCCHHHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHTSCCCSSSSHHHHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCCcCcccCCCchHHHHHHHHHHHcCchhhcCCCHHHHHHHHHHHHHccCCCCCcChHHHhHHHHHHHHHHHhccch
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHHHHHHHH
Q psy8796 167 RFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMK 245 (536)
Q Consensus 167 ~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~ 245 (536)
..|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++||+++++|||.+|++++++.+|+
T Consensus 275 ~~ls~lE~lAlliAAl~HDvdHPG~nN~Fli~t~spLAilYnD~SVLEnHH~a~af~LL~~~~~NIf~nLs~~e~~~~R~ 354 (533)
T 3qi3_A 275 EKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQ 354 (533)
T ss_dssp GTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHSGGGCTTTTSCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHcCCCcHhHHHHHHHHHHHHhccccchhcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHH
Q psy8796 246 LVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEK 325 (536)
Q Consensus 246 ~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek 325 (536)
+|+++||||||++||+++++|++.++ .+++.++++|.++++++||||||||++|||+++++|+.+|++|||+|||+||
T Consensus 355 lII~~ILATDMa~Hf~~l~~f~~~~~--~~d~~n~~~r~lL~~llikaADISn~~Rp~~v~~kWa~~l~eEFf~QGD~Ek 432 (533)
T 3qi3_A 355 GMITLILATDMARHAEIMDSFKEKME--NFDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREK 432 (533)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHT--TCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHhHhHHH
Confidence 99999999999999999999999885 4788899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHHHHHHh
Q psy8796 326 LQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQP-LYDGTYENRKHWQDLAEKVE 392 (536)
Q Consensus 326 ~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~-l~~~l~~N~~~W~~l~e~~e 392 (536)
. ++.+++|+|||++ ..+|++|+|||++||+|||++++++||++++ +++.+++|+++|+++++..|
T Consensus 433 ~-~GLpvsPl~DR~~-~~~~ksQigFId~iv~PLfe~l~~lfP~l~~~~l~~L~~Nr~~w~~l~~~~e 498 (533)
T 3qi3_A 433 S-EGLPVAPFMDRDK-VTKATAEIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDD 498 (533)
T ss_dssp T-TTCCCCGGGCTTT-CCHHHHHHHHHHHTHHHHHHHHHTTCTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred h-cCCCCCCCCCccc-ccchhhhHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5666678999986 5799999999999999999999999999996 68999999999999987654
No 12
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A*
Probab=100.00 E-value=3.3e-83 Score=665.55 Aligned_cols=300 Identities=26% Similarity=0.448 Sum_probs=277.7
Q ss_pred cccceeeecCCCCc----hhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCC-CCCCCchhhHHHHHHHHHHHHh
Q psy8796 87 NLYSFTFIDFDLSD----MDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR-PVKYHNWRHALNVAQTMFAMLK 161 (536)
Q Consensus 87 ~l~s~~F~~~~l~~----~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~ 161 (536)
++.+|+|++|++.+ ..++.+++.||.++|+++.|+|+.++|.+||..|+++|+ +||||||.||+||+|+++++|.
T Consensus 13 ~~~~W~Fdif~l~~~~~~~~L~~~~~~lf~~~~l~~~f~i~~~~L~~fl~~v~~~Y~~~npYHN~~Ha~dV~q~~~~~l~ 92 (338)
T 3ecm_A 13 NEEYWDFDIFELEAATHNRPLIYLGLKMFARFGICEFLHCSESTLRSWLQIIEANYHSSNPYHNSTHSADVLHATAYFLS 92 (338)
T ss_dssp TTTSSSCCHHHHHHHTTSCHHHHHHHHHHHHTTCHHHHTCCHHHHHHHHHHHHHTSCTTSSSSSHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCceecccccCCCcHHHHHHHHHHHcCcHHhcCCCHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 57899999998864 458889999999999999999999999999999999999 5999999999999999999999
Q ss_pred hchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHH-hcCCCccccCCCHHH
Q psy8796 162 TGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMIL-NSDGNNIFQALSPHD 239 (536)
Q Consensus 162 ~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL-~~~~~nif~~l~~~~ 239 (536)
.+++...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++|| +++++|||++|++++
T Consensus 93 ~~~l~~~l~~~e~~all~Aal~HD~~HpG~nN~fli~~~s~LA~lYnd~SvLEnhH~a~~f~ll~~~~~~nif~~l~~~~ 172 (338)
T 3ecm_A 93 KERIKETLDPIDEVAALIAATIHDVDHPGRTNSFLCNAGSELAILYNDTAVLESHHAALAFQLTTGDDKCNIFKNMERND 172 (338)
T ss_dssp SHHHHTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHTSTTTCTTTTSCHHH
T ss_pred hcchhhhhhHHHHHHHHHHHHHhccCCCCccchHHHHhCCHHHHHcCCCChhHHHHHHHHHHHHhcCcccccccCCCHHH
Confidence 999999999999999999999999999999999999999999999997 999999999999986 678999999999999
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh--------cCC---------CCCCcHHHHHHHHHHHHhhccccCCCCC
Q psy8796 240 YRIVMKLVENSILSTDLAMYFKKKNRFIQLVE--------NGE---------FDWQSEEKKQLLCGMMMTACDVGAIAKP 302 (536)
Q Consensus 240 ~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~--------~~~---------~d~~~~e~r~lll~lllkaADiSn~~Rp 302 (536)
++.+|++|+++||||||++||+++++|++.+. +|. +++.++++|.++++++||||||||++||
T Consensus 173 ~~~~r~~ii~~ILATDm~~Hf~~l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~lik~ADisn~~rp 252 (338)
T 3ecm_A 173 YRTLRQGIIDMVLATEMTKHFEHVNKFVNSINKPLATLEENGETDKNQEVINTMLRTPENRTLIKRMLIKCADVSNPCRP 252 (338)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTHHHHHHHTTSCSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTCGGGSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccCCHHHHHHHHHHHHHHHhcccccCC
Confidence 99999999999999999999999999987543 221 2356788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHhhcCCCC-CcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy8796 303 WEVQHKMAKLVADEFFDQGDLEKLQLNTQP-VAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENR 381 (536)
Q Consensus 303 ~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P-~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~~~l~~N~ 381 (536)
|+++++|+.+|++|||+|||+||. ++.++ +|+|||++ ..+|++|+|||++||+|||++++ .||+++++++++++|+
T Consensus 253 ~~v~~~W~~~l~eEFf~QgD~Ek~-~glp~~~p~~DR~~-~~~~k~QigFi~~iv~Plf~~~~-~f~~l~~~l~~l~~N~ 329 (338)
T 3ecm_A 253 LQYCIEWAARISEEYFSQTDEEKQ-QGLPVVMPVFDRNT-CSIPKSQISFIDYFITDMFDAWD-AFVDLPDLMQHLDNNF 329 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTCCCSCTTCCTTT-CCHHHHHHHHHHHTHHHHHHHHH-HHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHh-cCCCCCCCccCccc-ccchhhHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 999999999999999999999984 34443 57999985 78999999999999999999998 6799999999999999
Q ss_pred HHHHHHHH
Q psy8796 382 KHWQDLAE 389 (536)
Q Consensus 382 ~~W~~l~e 389 (536)
++|+++.|
T Consensus 330 ~~W~~l~e 337 (338)
T 3ecm_A 330 KYWKGLDE 337 (338)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhc
Confidence 99998743
No 13
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A*
Probab=100.00 E-value=2.4e-82 Score=671.65 Aligned_cols=299 Identities=29% Similarity=0.477 Sum_probs=281.2
Q ss_pred cccceeeecCCCCch----hhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCC-CCCCCchhhHHHHHHHHHHHHh
Q psy8796 87 NLYSFTFIDFDLSDM----DTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR-PVKYHNWRHALNVAQTMFAMLK 161 (536)
Q Consensus 87 ~l~s~~F~~~~l~~~----el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~ 161 (536)
++..|+|++|.+.+. .+..+++.||.++|+++.|+||.++|.+||..|+++|+ +||||||.||+||+|++|+++.
T Consensus 100 ~i~~W~fdiF~l~~~s~~~~L~~l~~~iF~~~~L~~~f~I~~~~L~~FL~~ve~~Y~~~~pYHN~~HA~dV~Q~~~~ll~ 179 (421)
T 3g4g_A 100 DVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLS 179 (421)
T ss_dssp GTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHTCCHHHHHHHHHHHHHTSCSSCSSSSHHHHHHHHHHHHHHHT
T ss_pred ccCcCCCCcccHHHhcCCCchHHHHHHHHHhCCcHhhcCCCHHHHHHHHHHHHHcccCCCCCcCcHHHhHHHHHHHHHHh
Confidence 577899998876543 35667789999999999999999999999999999999 6999999999999999999999
Q ss_pred hchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHHH
Q psy8796 162 TGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDY 240 (536)
Q Consensus 162 ~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~ 240 (536)
.+++...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++||++++||||++|+++++
T Consensus 180 ~~~l~~~ls~le~lalliAAl~HDvdHpG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~~f~LL~~~~~nIf~~L~~~e~ 259 (421)
T 3g4g_A 180 TPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQR 259 (421)
T ss_dssp CGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHHTTSSHHHHHHHHHHHHGGGSTTCCTTTTSCHHHH
T ss_pred hhhhhhhcchHHHHHHHHHHHHhcCCCCCCCCHHHHHcCCHHHHHcCCCcHHHHHHHHHHHHHHhhccchhhhcCCHHHH
Confidence 999999999999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC------CCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHH
Q psy8796 241 RIVMKLVENSILSTDLAMYFKKKNRFIQLVENG------EFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVA 314 (536)
Q Consensus 241 ~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~------~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~ 314 (536)
+.+|++|+++||||||++||+++++|+++++.+ .+++.+.++|.++++++||||||||++|||+++++|+.+|+
T Consensus 260 ~~~r~lii~~ILATDMa~Hf~~l~~~k~~~~~~~~~~~g~~~~~~~~dr~~ll~~lik~ADISn~~rp~~v~~~Wa~~l~ 339 (421)
T 3g4g_A 260 QSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIM 339 (421)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHTCCBCTTCCBCCCSHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhccccCcccccccCChHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998754 34567888999999999999999999999999999999999
Q ss_pred HHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHH
Q psy8796 315 DEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYENRKHWQDL 387 (536)
Q Consensus 315 ~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~-P~l~~l~~~l~~N~~~W~~l 387 (536)
+|||+|||+||. ++.+|+|+|||++ ..+|++|+|||++||+|||+++++++ |+++++++++++|+++|+++
T Consensus 340 eEFf~QGD~Ek~-~Glp~sp~~DR~~-~~~~ksQigFid~iv~PLf~~la~l~~p~l~~~ld~l~~Nr~~w~~~ 411 (421)
T 3g4g_A 340 EEFFRQGDRERE-RGMEISPMCDKHN-ASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQST 411 (421)
T ss_dssp HHHHHHHHHHHH-TTCCCCTTCCTTS-CCHHHHHHHHHHHTHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhHHHh-cCCCCCCcCCccc-cchHHHHHHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHc
Confidence 999999999984 5667778999985 78999999999999999999999986 99999999999999999986
No 14
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ...
Probab=100.00 E-value=3.2e-82 Score=660.27 Aligned_cols=301 Identities=29% Similarity=0.476 Sum_probs=279.7
Q ss_pred cccceeeecCCCCc----hhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCC-CCCCCchhhHHHHHHHHHHHHh
Q psy8796 87 NLYSFTFIDFDLSD----MDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR-PVKYHNWRHALNVAQTMFAMLK 161 (536)
Q Consensus 87 ~l~s~~F~~~~l~~----~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~ 161 (536)
++..|+|+.|.+.+ ..+..+++.||.++|+++.|+|+.++|.+||..|+++|+ +||||||.||+||+|++|+++.
T Consensus 34 ~~~~w~fd~f~~~~~~~~~~L~~~~~~~f~~~~l~~~f~i~~~~L~~fl~~v~~~Y~~~npYHN~~HA~dV~q~~~~ll~ 113 (349)
T 1y2k_A 34 DVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLS 113 (349)
T ss_dssp GTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHTSCTTCSSSSHHHHHHHHHHHHHHHT
T ss_pred ccCcCCCcceeHHhhcCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHHHHHh
Confidence 34566666666543 235566789999999999999999999999999999999 7999999999999999999999
Q ss_pred hchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHHH
Q psy8796 162 TGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDY 240 (536)
Q Consensus 162 ~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~ 240 (536)
.+++...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++||+++++|||++|+++++
T Consensus 114 ~~~l~~~l~~le~~alliAAl~HDv~HpG~nN~fli~t~s~LA~lYnd~SvLEnhH~a~a~~lL~~~~~nif~~l~~~~~ 193 (349)
T 1y2k_A 114 TPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQR 193 (349)
T ss_dssp CGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHHTTSSHHHHHHHHHHHHGGGSTTCCTTTTSCHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHHHhccCCCCCCCcHHHHhcCCHHHHHcCCCCHHHHHHHHHHHHHHcccccchhhcCCHHHH
Confidence 999999999999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc------CCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHH
Q psy8796 241 RIVMKLVENSILSTDLAMYFKKKNRFIQLVEN------GEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVA 314 (536)
Q Consensus 241 ~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~------~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~ 314 (536)
+.+|++|+++||||||++||+++++|+++++. |.+++.+.++|.++++++||||||||++|||+++++|+.+|+
T Consensus 194 ~~~r~~ii~~ILATDm~~Hf~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~ll~~lik~ADis~~~rp~~~~~~W~~~l~ 273 (349)
T 1y2k_A 194 QSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIM 273 (349)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHTCCBCTTCCBCCCSHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHhcccccccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999875 445677889999999999999999999999999999999999
Q ss_pred HHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHH
Q psy8796 315 DEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT-FPWIQPLYDGTYENRKHWQDLAE 389 (536)
Q Consensus 315 ~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~-~P~l~~l~~~l~~N~~~W~~l~e 389 (536)
+|||.|||+||. ++.+|+|+|||++ .++|++|+|||++||+|||++++++ +|.++++++++++|+++|+++++
T Consensus 274 eEF~~Qgd~E~~-~gl~~sp~~DR~~-~~~~k~QigFi~~vv~Pl~~~l~~~~~p~~~~~~~~l~~N~~~w~~~i~ 347 (349)
T 1y2k_A 274 EEFFRQGDRERE-RGMEISPMCDKHN-ASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIP 347 (349)
T ss_dssp HHHHHHHHHHHH-HTCCCCTTCCTTS-CCHHHHHHHHHHHTHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH-cCCCCCCCcCccc-cchHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHhcC
Confidence 999999999994 5666778999985 7899999999999999999999997 59999999999999999998743
No 15
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=100.00 E-value=3.5e-82 Score=660.38 Aligned_cols=302 Identities=26% Similarity=0.439 Sum_probs=284.6
Q ss_pred cccceeeecCCCCc----hhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcC-CCCCCCchhhHHHHHHHHHHHHh
Q psy8796 87 NLYSFTFIDFDLSD----MDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNY-RPVKYHNWRHALNVAQTMFAMLK 161 (536)
Q Consensus 87 ~l~s~~F~~~~l~~----~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y-~~~pYHN~~HA~dV~Q~~~~lL~ 161 (536)
++.+|+|++|++++ ..++.+++.||.++|+++.|+|+.++|.+||..|+++| ++||||||.||+||+|++|+++.
T Consensus 21 ~i~~w~Fd~f~l~~~~~~~~L~~~~~~lf~~~~l~~~f~i~~~~L~~Fl~~v~~~Y~~~npYHN~~HA~dV~q~~~~ll~ 100 (353)
T 1zkl_A 21 KVGNWNFDIFLFDRLTNGNSLVSLTFHLFSLHGLIEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLK 100 (353)
T ss_dssp TTTCTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHTSCTTSSSSSHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCChhHhhhhcCCCcHHHHHHHHHHHcCcHHhcCCCHHHHHHHHHHHHHccCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 57889999998764 36889999999999999999999999999999999999 78999999999999999999999
Q ss_pred hchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHHH
Q psy8796 162 TGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDY 240 (536)
Q Consensus 162 ~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~ 240 (536)
.+++...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++||+ ++|||++|+++++
T Consensus 101 ~~~l~~~l~~le~~alliAAl~HDv~HpG~nN~fli~~~s~LA~lYnd~SvLEnhH~a~a~~iL~--~~ni~~~l~~~~~ 178 (353)
T 1zkl_A 101 EPKLANSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLR--ESGLFSHLPLESR 178 (353)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHH--HHTTTTTSCHHHH
T ss_pred hhHHhhhCCHHHHHHHHHHHHHhccCCCCCCcHHHHhcCCHHHHHcCCCCHHHHHHHHHHHHHHH--hcCccccCCHHHH
Confidence 999999999999999999999999999999999999999999999997 9999999999999998 5899999999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhc
Q psy8796 241 RIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQ 320 (536)
Q Consensus 241 ~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~Q 320 (536)
+.+|++|+++||||||++||+++++|++.++.+.+++.++++|.++++++||||||||++|||+++++|+.+|++|||.|
T Consensus 179 ~~~r~~ii~~ILATDm~~Hf~~l~~~~~~~~~~~~~~~~~~~r~lll~~iik~ADis~~~rp~~~~~~W~~~l~eEF~~Q 258 (353)
T 1zkl_A 179 QQMETQIGALILATDISRQNEYLSLFRSHLDRGDLCLEDTRHRHLVLQMALKCADICNPCRTWELSKQWSEKVTEEFFHQ 258 (353)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHh
Q psy8796 321 GDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF--PWIQPLYDGTYENRKHWQDLAEKVE 392 (536)
Q Consensus 321 GD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~--P~l~~l~~~l~~N~~~W~~l~e~~e 392 (536)
||+||. ++.+|+|+|||++ .++|++|+|||++||+|+|+++++++ |.++++++++++|+++|+++.++..
T Consensus 259 gd~E~~-lgl~~sp~~dR~~-~~~~k~QigFi~~vv~Pl~~~l~~~~~~p~~~~~l~~l~~N~~~W~~~~~~~~ 330 (353)
T 1zkl_A 259 GDIEKK-YHLGVSPLCDRHT-ESIANIQIGFMTYLVEPLFTEWARFSNTRLSQTMLGHVGLNKASWKGLQREQS 330 (353)
T ss_dssp HHHHHH-TTSCCCTTCCTTT-CCHHHHHHHHHHHTHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHh-cCCCCCCCCCCcc-cccHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999994 6667778999985 78999999999999999999999998 4578999999999999999876543
No 16
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=100.00 E-value=1.2e-79 Score=643.69 Aligned_cols=298 Identities=28% Similarity=0.469 Sum_probs=269.3
Q ss_pred cccceeeecCCCCch----hhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCC--CCCCCchhhHHHHHHHHHHHH
Q psy8796 87 NLYSFTFIDFDLSDM----DTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR--PVKYHNWRHALNVAQTMFAML 160 (536)
Q Consensus 87 ~l~s~~F~~~~l~~~----el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~--~~pYHN~~HA~dV~Q~~~~lL 160 (536)
++.+|+|++|++++. .+..+++.||.++|+++.|+|+.++|.+||..|+++|+ +||||||.||+||+|++|++|
T Consensus 19 ~i~~w~Fd~f~l~~~~~~~~L~~~~~~lf~~~~l~~~f~i~~~~L~~Fl~~v~~~Y~~~~npYHN~~HA~dV~q~~~~ll 98 (365)
T 1taz_A 19 NLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHCFL 98 (365)
T ss_dssp TTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHHHTTTCCSSSSHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCccccccccCCCcHHHHHHHHHHHCCcHHhcCCCHHHHHHHHHHHHHhcCcCCCCCcCHHHHHHHHHHHHHHH
Confidence 567899999988764 46778899999999999999999999999999999998 699999999999999999999
Q ss_pred hhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCccccCCCHHH
Q psy8796 161 KTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHD 239 (536)
Q Consensus 161 ~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~ 239 (536)
..+++...|+++|++|+++||+|||+||||+||.|++++++|||++||+ |||||||++.+++||+++++|||.+|++++
T Consensus 99 ~~~~l~~~l~~le~~alliAAl~HDv~HpG~nN~fli~t~s~LA~lYnd~SvLEnhH~a~a~~iL~~~~~nif~~l~~~e 178 (365)
T 1taz_A 99 LRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQDDEMNIFINLTKDE 178 (365)
T ss_dssp HHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHHHHHHTTSGGGCTTTTSCHHH
T ss_pred HhhhHHhhCCHHHHHHHHHHHHHhcCCCCCCccHHHHhcCChHHHHcCCCcHHHHHHHHHHHHHHhCcccccccCCCHHH
Confidence 9999999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhh
Q psy8796 240 YRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFD 319 (536)
Q Consensus 240 ~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~ 319 (536)
++.+|++|+++||||||++||+++++|++.++.++ ..+|..+++++||||||||++|||+++++|+.+|++|||+
T Consensus 179 ~~~~r~~ii~~ILATDm~~Hf~~l~~~~~~~~~~~-----~~dr~~~l~~iik~ADis~~~rp~~~~~~W~~~l~eEF~~ 253 (365)
T 1taz_A 179 FVELRALVIEMVLATDMSCHFQQVKTMKTALQQLE-----RIDKPKALSLLLHAADISHPTKQWLVHSRWTKALMEEFFR 253 (365)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcCcc-----chHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654 2357889999999999999999999999999999999999
Q ss_pred chhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCC-c----------------------------
Q psy8796 320 QGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPW-I---------------------------- 370 (536)
Q Consensus 320 QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~-l---------------------------- 370 (536)
|||+||. ++.+|+|+|||++ ..+|++|+|||++||+|||+++++++|. +
T Consensus 254 QgD~E~~-lglp~sp~~DR~~-~~~~k~QigFi~~iv~Plf~~l~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 1taz_A 254 QGDKEAE-LGLPFSPLCDRTS-TLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVG 331 (365)
T ss_dssp HHHHHHH-HTCC------CCH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHH-cCCCCCCCCCCcc-ccchHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhccccccccccccccCCCcccccc
Confidence 9999994 5677778999985 6899999999999999999999998774 1
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHH
Q psy8796 371 ----------QPLYDGTYENRKHWQDLAEKV 391 (536)
Q Consensus 371 ----------~~l~~~l~~N~~~W~~l~e~~ 391 (536)
.++.+.+.+|+++|++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~n~~~wk~~~~~~ 362 (365)
T 1taz_A 332 DPNPDVVSFRSTWVKRIQENKQKWKERAASG 362 (365)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccchhhccchHHHHHHHHHHHHHHHHhcc
Confidence 255677889999999987743
No 17
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=100.00 E-value=3.3e-78 Score=641.79 Aligned_cols=281 Identities=27% Similarity=0.460 Sum_probs=260.2
Q ss_pred cccceeeecCCCCchh-------hhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHH
Q psy8796 87 NLYSFTFIDFDLSDMD-------TCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAM 159 (536)
Q Consensus 87 ~l~s~~F~~~~l~~~e-------l~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~l 159 (536)
++.+|+|++|++++.+ +..+++.||.++|+++.|+|+.++|.+||..|+++|++||||||.||+||+|++|++
T Consensus 20 ~i~~W~Fdif~l~~~~~~~~g~~L~~~~~~lf~~~~l~~~f~I~~~~L~~Fl~~v~~~Y~~nPYHN~~HA~DV~Q~~~~l 99 (420)
T 1so2_A 20 KMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHNRIHATDVLHAVWYL 99 (420)
T ss_dssp HHTSTTCCHHHHHHHHGGGGGGHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHTTSCSCSSSSHHHHHHHHHHHHHH
T ss_pred hCCCCCCCccccchhhccccchHHHHHHHHHHHHCChHHhcCCCHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHH
Confidence 5789999999987654 456778999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc--------------------------------------------hhhccCCHHHHHHHHHHhhccCCCCCCCCccc
Q psy8796 160 LKTG--------------------------------------------KMERFMSDLEILGLLVACLCHDLDHRGTNNAF 195 (536)
Q Consensus 160 L~~~--------------------------------------------~l~~~ls~lE~lAllvAALcHDvdHpG~nN~F 195 (536)
+... .+...|+++|++|++|||+|||+||||+||+|
T Consensus 100 L~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~k~~~~~~~~~g~l~~~l~~lE~lAlliAAl~HDvdHpG~nN~F 179 (420)
T 1so2_A 100 TTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHDYDHPGRTNAF 179 (420)
T ss_dssp TTSCEETCCCCCCC---------------CCCCCCCCTTCCCSSTTEECGGGTSCHHHHHHHHHHHHHTTTTCCSCCHHH
T ss_pred HhccccccccccccccccccccccccccccchhhhhcccccccccccchhhhccCHHHHHHHHHHHHHhcCCCCCCCCch
Confidence 8631 12345899999999999999999999999999
Q ss_pred cccccchhhhhcCC-CccccchhHHHHHH-HhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC
Q psy8796 196 QTKTESPLAILYTT-STMEHHHFDQCVMI-LNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENG 273 (536)
Q Consensus 196 li~t~spLAilYn~-SVLEnhH~a~~~~i-L~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~ 273 (536)
++++++|||++||+ |||||||++.++.| |+++++|||.+|++++++.+|++||++||||||++||+++++|++++..+
T Consensus 180 lv~t~spLA~lYnD~SVLEnhH~a~af~llL~~~~~ni~~~L~~~e~~~~R~lii~~ILATDMa~Hf~~l~~f~~~~~~~ 259 (420)
T 1so2_A 180 LVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNAKANDV 259 (420)
T ss_dssp HHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHTCGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHTSS
T ss_pred hhhcCChHHHHhCCccHHHHHHHHHHHHHHhcCcccchhccCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhcc
Confidence 99999999999997 99999999999987 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhh
Q psy8796 274 ---EFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVG 350 (536)
Q Consensus 274 ---~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~Qig 350 (536)
.++|.++++|.++++++||||||||++|||+++.+|+.+|++|||+|||+||. ++.+++|+|||.+ ..+|++|+|
T Consensus 260 ~~~~~~~~~~~~r~ll~~~lik~ADISn~~rp~~v~~kWa~~l~eEFf~QGD~Ek~-lGlpisP~~DR~~-~~~~k~Qig 337 (420)
T 1so2_A 260 NSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEAN-LGLPISPFMDRSS-PQLAKLQES 337 (420)
T ss_dssp SCCCCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCCTTCCTTS-CCHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCccCCcc-cccHHHHHH
Confidence 68899999999999999999999999999999999999999999999999994 5566668999985 799999999
Q ss_pred HHHHhHHHHHHHH--HHhCCC
Q psy8796 351 FIDVICLPLYKVM--SDTFPW 369 (536)
Q Consensus 351 Fi~~iv~Plf~~l--~~~~P~ 369 (536)
||++||+|||+++ +.++|.
T Consensus 338 Fi~~iv~PLf~~~~~a~l~P~ 358 (420)
T 1so2_A 338 FITHIVGPLCNSYDAAGLLPG 358 (420)
T ss_dssp HHHHTHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHhhhCch
Confidence 9999999999996 667896
No 18
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=99.14 E-value=6.8e-11 Score=110.08 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=51.5
Q ss_pred ccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 8 NEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 8 ~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
+.+.+.|||+||||||||+...+|+++||+|++||.++. .|+++|++.+..+..+ +++++|+.
T Consensus 86 pr~~~~tg~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~-~f~~eD~e~l~lLA~~-~a~aien~ 148 (160)
T 3cit_A 86 PQWLERPGTHLPCVLLLPLRGADEGSFGTLVLANSVAIS-APDGEDIESLQLLATL-LAAHLENN 148 (160)
T ss_dssp CEEEECTTSSSCEEEEEEEECSSSSEEEEEEEEESSCCC-CCCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred cccccccCcccceeEEEeeecCCCcEEEEEEEeccCCCC-CCCHHHHHHHHHHHHH-HHHHHHHH
Confidence 444469999999999999987799999999999999986 8999999975554444 44466654
No 19
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.13 E-value=3.5e-11 Score=112.06 Aligned_cols=64 Identities=30% Similarity=0.562 Sum_probs=57.1
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATA 67 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~ 67 (536)
+||||.+.+|..+||++||+||+||+. +|+||||+++.||.++. +|+++|++++..+++++|.+
T Consensus 107 ~d~~f~~~~~~~~~~~~~S~L~vPl~~-~~~viGVL~l~n~~~~~-~Ft~~d~~lL~~lA~~aa~~ 170 (180)
T 3dba_A 107 KNNHFSDYLDKKTGYTTVNMMAIPITQ-GKEVLAVVMALNKLNAS-EFSKEDEEVFKKYLNFISLV 170 (180)
T ss_dssp GCTTCCCHHHHHHCCCCCCEEEEEEEE-TTEEEEEEEEEEESSSS-SCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccChhhccccCccccEEEEEEecc-CCEEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999997 58999999999999875 89999999877777766654
No 20
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.44 E-value=1.7e-07 Score=85.21 Aligned_cols=68 Identities=44% Similarity=0.687 Sum_probs=56.8
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.||+|.+..|...|+.++|+||+||+. +|+++||+.+.|+..+. .|+++|++++..++.+.| .++++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~s~l~vPl~~-~~~~iGvl~l~~~~~~~-~f~~~d~~ll~~la~~~a-~ai~na 177 (189)
T 2e4s_A 110 ADPRFNREVDLYTGYTTRNILCMPIVS-RGSVIGVVQMVNKISGS-AFSKTDENNFKMFAVFCA-LALHCA 177 (189)
T ss_dssp GSTTCCTHHHHHHCCCCCCEEEEEEEE-TTEEEEEEEEEEETTSS-SCCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cCcccChhhccccCCccceEEEEEecc-CCeEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 588999888989999999999999995 88999999999998875 799999998666555444 456554
No 21
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=98.37 E-value=3.2e-07 Score=82.97 Aligned_cols=68 Identities=44% Similarity=0.687 Sum_probs=57.2
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.||+|....+...++.++|+||+||.. +|+++||+.++|+..+. +|+++|++++..++.+.| .+++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~s~l~vPl~~-~~~~~Gvl~l~~~~~~~-~f~~~d~~ll~~lA~q~a-~Ai~na 177 (189)
T 2zmf_A 110 ADPRFNREVDLYTGYTTRNILCMPIVS-RGSVIGVVQMVNKISGS-AFSKTDENNFKMFAVFCA-LALHCA 177 (189)
T ss_dssp GSTTCCTHHHHHHCCCCCCEEEEEEEE-TTEEEEEEEEEEETTSS-SCCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred ccccccccchhhcccccceEEEeeecc-cCceeeEEEEEEcCCCC-CcCHHHHHHHHHHHHHHH-HHHHHH
Confidence 478898888989999999999999996 68999999999998876 899999998666555554 456664
No 22
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.25 E-value=6.5e-07 Score=92.23 Aligned_cols=69 Identities=30% Similarity=0.477 Sum_probs=56.6
Q ss_pred CCCCCCcc--ccccCCceeeeeEEeeeecCCCcEEEEEEEEecCC-------------------CCCCCCHHHHHHHHHH
Q psy8796 2 VDPRFNNE--IDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTD-------------------GTSSFTDRDIEVALEC 60 (536)
Q Consensus 2 ~dprF~~~--~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~-------------------~~~~Ft~~D~~~~~~~ 60 (536)
.||+|... +|..+||.++|+||+||++.+|+++||+++.|+.+ .. .|+++|++++..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~d~~ll~~l 366 (398)
T 1ykd_A 288 DHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKKTGEFPPYNPETWPIAPECFQA-SFDRNDEEFMEAF 366 (398)
T ss_dssp GSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECCSSCCCCCCGGGTTCCCGGGCC-CCCHHHHHHHHHH
T ss_pred cCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCCcccccccccccccccccccCC-CCCHHHHHHHHHH
Confidence 57899877 88889999999999999976889999999999984 33 8999999986665
Q ss_pred hHhhhcccCccc
Q psy8796 61 LSYHATASGEDT 72 (536)
Q Consensus 61 ~s~~a~~~~e~~ 72 (536)
+.+.| .++++.
T Consensus 367 a~~~a-~al~na 377 (398)
T 1ykd_A 367 NIQAG-VALQNA 377 (398)
T ss_dssp HHHHH-HHHHHH
T ss_pred HHHHH-HHHHHH
Confidence 55544 456654
No 23
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.19 E-value=1.7e-06 Score=87.60 Aligned_cols=69 Identities=36% Similarity=0.599 Sum_probs=57.7
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.||+|.+..+..+||.++|+||+||...+|+++||+.+.|+..+. +|+++|.+++..++.+.|. ++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~-~f~~~d~~ll~~la~~~a~-ai~na 338 (368)
T 1mc0_A 270 AHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGP-WFSKFDEDLATAFSIYCGI-SIAHS 338 (368)
T ss_dssp TCTTCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSS-SCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCcccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 689999999999999999999999997568999999999998775 7999999986665555444 56553
No 24
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.06 E-value=6.3e-06 Score=77.51 Aligned_cols=58 Identities=24% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
+||||.. .++.+||+||+||+..+|+|+||+++.++..+ .|+++|++++..+....+.
T Consensus 118 ~dp~~~~-----~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~--~F~~~d~~~L~~la~~~a~ 175 (180)
T 1f5m_A 118 KYPGHIA-----CDGETKSEIVVPIISNDGKTLGVIDIDCLDYE--GFDHVDKEFLEKLAKLINK 175 (180)
T ss_dssp GSTTCCC-----SSTTCCEEEEEEEECTTSCEEEEEEEEESSTT--CCCHHHHHHHHHHHHHHHH
T ss_pred cCccccc-----cCcccceEEEEEEEcCCCeEEEEEEeccCCCC--CcCHHHHHHHHHHHHHHHH
Confidence 5788862 35788999999999758899999999998775 7999999987776666554
No 25
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=97.98 E-value=1.5e-06 Score=89.43 Aligned_cols=66 Identities=29% Similarity=0.433 Sum_probs=53.7
Q ss_pred CCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEec--------------CCCCCCCCHHHHHHHHHHhHhhhcccC
Q psy8796 4 PRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINK--------------TDGTSSFTDRDIEVALECLSYHATASG 69 (536)
Q Consensus 4 prF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK--------------~~~~~~Ft~~D~~~~~~~~s~~a~~~~ 69 (536)
|+|.+.+|..+||.++|+||+||.+.+|+++||+++.|+ .... .|+++|++++..+..+.+ .++
T Consensus 105 ~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~~~~~~~~~~~l~~~~~~~-~f~~~d~~~l~~~a~~~~-~al 182 (398)
T 1ykd_A 105 SIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKPYSPPDALLAERIDNQ-GFTSADEQLFQEFAPSIR-LIL 182 (398)
T ss_dssp GHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEEBCSCCCTTCCHHHHBCTT-CCCHHHHHHGGGTHHHHH-HHH
T ss_pred hhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEeccCCcccccccccccccccC-CCCHHHHHHHHHHHHHHH-HHH
Confidence 788899999999999999999999878999999999999 2343 899999997665544444 345
Q ss_pred cc
Q psy8796 70 ED 71 (536)
Q Consensus 70 e~ 71 (536)
++
T Consensus 183 ~~ 184 (398)
T 1ykd_A 183 ES 184 (398)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 26
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.87 E-value=1.8e-05 Score=73.78 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=46.1
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
+||+|... ...++|+||+||+. +|+||||+.+-++..+ .|+++|++++..++...+.
T Consensus 102 ~~p~~~~~-----~~~~~S~i~vPi~~-~g~viGVL~i~s~~~~--~F~~~d~~~L~~lA~~la~ 158 (167)
T 3mmh_A 102 AHPDHIAC-----SSLSRSEIVVPLFS-DGRCIGVLDADSEHLA--QFDETDALYLGELAKILEK 158 (167)
T ss_dssp GSTTCCCS-----STTCCEEEEEEEEE-TTEEEEEEEEEESSTT--CCCHHHHHHHHHHHHHHHH
T ss_pred cCcchhhc-----CccCCeEEEEEecc-CCEEEEEEEEecCCCC--CCCHHHHHHHHHHHHHHHH
Confidence 57888542 35689999999996 7899999999998765 6999999987776665554
No 27
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=97.83 E-value=2.7e-05 Score=67.50 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.||+|..... .....+|+||+||+ .+|+++||+.+.++..+. .|+++|.+++..+..+.+. ++++.
T Consensus 81 ~~~~~~~~~~--~~~~~~s~l~vPl~-~~~~~~Gvl~l~~~~~~~-~f~~~~~~~l~~la~~~a~-ai~~a 146 (153)
T 2w3g_A 81 AHPASIGFPP--YHPPMRTFLGVPVR-VRDESFGTLYLTDKTNGQ-PFSDDDEVLVQALAAAAGI-AVANA 146 (153)
T ss_dssp GSTTCCCCCT--TCCCCCCEEEEEEE-ETTEEEEEEEEEEETTSC-CCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCchhcCCCC--cCCCCCeEEEeeEE-ECCEEEEEEEEeeCCCCC-CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 3566655444 33467999999999 488999999999998865 8999999986665555444 55543
No 28
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.80 E-value=3.4e-05 Score=73.80 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=47.0
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
+||+|... ...+||+||+||+. +|+|+||+++-++..+ .|+++|++++..+++..+. ++++
T Consensus 113 ~~p~~~~~-----~~~~~S~l~VPI~~-~g~viGVL~i~s~~~~--~F~e~d~~~L~~lA~~ia~-ale~ 173 (195)
T 1vhm_A 113 VFDGHIAC-----DAASNSEIVLPLVV-KNQIIGVLDIDSTVFG--RFTDEDEQGLRQLVAQLEK-VLAT 173 (195)
T ss_dssp TCTTCCCS-----CCCCSEEEEEEEEE-TTEEEEEEEEEESSTT--CCCHHHHHHHHHHHHHHHH-HHHT
T ss_pred cCcchhhc-----CCCccEEEEEeEeE-CCEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 57887442 23579999999996 7899999999998775 7999999987766665554 4443
No 29
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=97.76 E-value=2.9e-05 Score=68.56 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=46.1
Q ss_pred cccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 11 DRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 11 D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
+...++..+|+||+||.. +|+++||+.+.++..+. +|+++|.+++..+..+. +.++++.
T Consensus 105 ~~~~~~~~~s~l~vPl~~-~~~~iGvl~~~~~~~~~-~f~~~d~~~l~~~a~~~-a~ai~na 163 (169)
T 3oov_A 105 DAIRALRSKSFVICPIVV-KGEAIGVFAVDNRSSRR-SLNDTDVDTIKLFADQA-SSAIVRI 163 (169)
T ss_dssp GGCGGGCCSSEEEEEEEE-TTEEEEEEEEECTTSSS-CCCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHhcCcCcEEEEEEEe-CCcEEEEEEEEccccCC-CCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 445667899999999995 78999999999998765 79999999866655444 4455554
No 30
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=97.72 E-value=4.9e-05 Score=68.63 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=41.8
Q ss_pred eeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 17 TTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 17 ~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.++|+||+||.. +|+++||+.+.|+.... +|+++|++++..+.++.|. ++++.
T Consensus 83 ~~~s~l~vPL~~-~~~~~GvL~l~~~~~~~-~f~~~d~~ll~~lA~~aa~-al~~a 135 (149)
T 2vjw_A 83 LGGPALVLPLRA-TDTVAGVLVAVQGSGAR-PFTAEQLEMMTGFADQAAV-AWQLA 135 (149)
T ss_dssp CEEEEEEEEEEE-TTEEEEEEEEEEETTCC-CCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCCeEEEEEEcc-CCeEEEEEEEeeCCCCC-CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 478999999996 78999999999995544 8999999986665555544 55554
No 31
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=97.71 E-value=4.8e-06 Score=96.01 Aligned_cols=69 Identities=45% Similarity=0.737 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCC-CCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGT-SSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~-~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
.||+|...+|..+||.++|+||+||.+.+|+++||+++.|+..+. ..|+++|++++..++.+.+. ++++
T Consensus 250 ~dp~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~-AL~n 319 (878)
T 3bjc_A 250 EDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGI-VLHN 319 (878)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cCcccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence 689999999999999999999999997688999999999998761 27999999986665555444 4543
No 32
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=97.70 E-value=5e-05 Score=70.11 Aligned_cols=55 Identities=25% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 14 TGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 14 tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
....+||+||+||.. +|++|||+.+-|+..+ .|+++|.+++..++++.|. +++++
T Consensus 90 ~~~~~~S~l~vPL~~-~~~~iGvl~l~~~~~~--~f~~~d~~~l~~la~~~ai-ai~na 144 (165)
T 3o5y_A 90 AILDLKSILVIPIYS-KNKRVGVLSIGRKQQI--DWSLDDLAFLEQLTDHLAV-SIENV 144 (165)
T ss_dssp HTTTCCEEEEEEEEC-SSCEEEEEEEEESSCC--CCCHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HhhCCCEEEEeCeeE-CCEEEEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 445689999999995 7899999999998654 7999999987766655555 67765
No 33
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.66 E-value=8.2e-05 Score=69.87 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATA 67 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~ 67 (536)
+||+|-.. | ..++|.||+||+. +|+||||+.+-++..+ .|+++|++++..++...+.+
T Consensus 102 ~~p~~i~~-~----~~~~Sei~VPI~~-~g~viGVL~i~s~~~~--~F~e~D~~~L~~lA~~la~~ 159 (171)
T 3rfb_A 102 TYLNYISC-D----SLAKSEIVVPMMK-NGQLLGVLDLDSSEIE--DYDAMDRDYLEQFVAILLEK 159 (171)
T ss_dssp SCSSCCCS-C----TTCCEEEEEEEEE-TTEEEEEEEEEESSTT--CCCHHHHHHHHHHHHHHHHS
T ss_pred cCcccccc-C----cccCceEEEEEEE-CCEEEEEEEEecCCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 57888431 2 4589999999995 7899999999998765 69999999877776666553
No 34
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=97.64 E-value=2.9e-05 Score=70.65 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=49.6
Q ss_pred CCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 3 dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
+++|....+...++.+||+||+||.. +|+++||+.+.|+... .|+++|.+++..++...|. ++++
T Consensus 103 ~~~~~~~~~~~~~~~~~s~l~vPi~~-~~~l~G~l~~~~~~~~--~~~~~e~~~l~~la~~~a~-ai~~ 167 (172)
T 2k2n_A 103 RPVDPCHVHYLKSMGVASSLVVPLMH-HQELWGLLVSHHAEPR--PYSQEELQVVQLLADQVSI-AIAQ 167 (172)
T ss_dssp CCCCHHHHHHHHTTTCSEEEECCCSC-SSCCCEEEEEEECSCC--CCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred cCCCHHHHHHHHhcCCeEEEEEEEEE-CCEEEEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 45565556666788999999999995 8899999999998443 7999999986665555444 4544
No 35
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=97.64 E-value=0.0001 Score=65.66 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=44.2
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
.||+|.. .....++..+|+||+||.. +|+++||+.+.++..+ .|+++|.+++..+..+.+. ++++
T Consensus 102 ~~~~~~~-~~~~~~~~~~s~l~vPl~~-~~~~iGvl~~~~~~~~--~f~~~~~~~l~~la~~~a~-al~~ 166 (181)
T 3e0y_A 102 QDPRYRY-FPELQEEKYNSMLSFPIGD-KKEVYGVINLNTTSIR--SFHEDEIYFVSIIANLILT-AIKL 166 (181)
T ss_dssp CCCCC----------CEEEEEEEEEEC-SSCEEEEEEEEESSCC--CCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred cCccccc-cccccccCcceEEEEEEEe-CCeEEEEEEEeeCCCC--CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 4666643 2223356779999999996 6899999999999644 7999999987665555554 4544
No 36
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=97.63 E-value=3.6e-05 Score=67.53 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.||+|...-+.......+|++|+||.. +|+++||+.+.++..+ .|+++|.+++..+..+ ++.++++.
T Consensus 74 ~~~~~~~~~~~~~~~g~~s~~~vPl~~-~~~~iGvl~~~~~~~~--~f~~~~~~ll~~~a~~-~a~ai~~~ 140 (151)
T 3hcy_A 74 DAEFSRELKESIVGEGIAALGFFPLVT-EGRLIGKFMTYYDRPH--RFADSEIGMALTIARQ-LGFSIQRM 140 (151)
T ss_dssp GSCCCHHHHHHHHHHTCCEEEEEEEES-SSSEEEEEEEEESSCC--CCCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hCcccchhHHHHHhcCchheEEeceEE-CCEEEEEEEEecCCCC--CCCHHHHHHHHHHHHH-HHHHHHHH
Confidence 356664332222333458999999997 8899999999998765 6999999976665444 44455543
No 37
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=97.59 E-value=0.00012 Score=64.56 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=48.1
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.||+|..... ......+|++|+||.. +|+++||+.+.++..+ .|+++|.+++..+..+.+. ++++.
T Consensus 97 ~~~~~~~~~~-~~~~~~~s~l~vPl~~-~~~~~Gvl~~~~~~~~--~f~~~d~~~l~~la~~~a~-ai~~a 162 (171)
T 3trc_A 97 LHPAYKHRPE-LGEEDYHGFLGIPIIE-QGELLGILVIQQLESH--HFAEEEEAFCVTLAIHLAA-EIAHA 162 (171)
T ss_dssp GSTTCCCCGG-GCCCCCCEEEEEEEEE-TTEEEEEEEEEESSSC--CCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCCccccccc-CCcccccEEEEEeEEE-CCEEEEEEEEeecCCC--CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 3677754322 2356779999999996 6899999999998754 7999999986665555444 55543
No 38
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=97.57 E-value=3e-05 Score=78.49 Aligned_cols=58 Identities=33% Similarity=0.587 Sum_probs=48.0
Q ss_pred ccccccCCceeeeeEEeeeecC-CCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 8 NEIDRRTGYTTNSILCVPINSY-EGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 8 ~~~D~~tgy~TrSiLc~Pi~~~-~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
+.+|...||.++|+||+||... +|+++||+.+.++.++. .|+++|++++..++.+.+.
T Consensus 104 ~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~-~f~~~d~~~l~~la~~~~~ 162 (368)
T 1mc0_A 104 QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGD-FFTDEDEHVIQHCFHYTGT 162 (368)
T ss_dssp HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCS-SCCSHHHHHHHHHHHHHHH
T ss_pred cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 4556778999999999999974 38999999999998875 7999999987776665554
No 39
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.55 E-value=0.00011 Score=68.23 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=44.4
Q ss_pred CCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhh
Q psy8796 2 VDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHA 65 (536)
Q Consensus 2 ~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a 65 (536)
+||+|-.. | ..++|.||+||+. +|+||||+.+-++..+ .|+++|++++..++...+
T Consensus 101 ~~p~~i~~-~----~~~~Sei~VPI~~-~g~viGVL~i~s~~~~--~F~e~D~~~L~~lA~~la 156 (160)
T 3ksh_A 101 QFKGHIAC-D----ANSKSEIVVPIFK-DDKIIGVLDIDAPITD--RFDDNDKEHLEAIVKIIE 156 (160)
T ss_dssp GSTTCCGG-G----TTCSEEEEEEEEE-TTEEEEEEEEEESSSS--CCCHHHHHHHHHHHHHHH
T ss_pred cCcccccc-C----cccCceEEEEEEE-CCEEEEEEEEecCCCC--CCCHHHHHHHHHHHHHHH
Confidence 47888442 2 3579999999996 7899999999998766 699999998777666544
No 40
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=97.54 E-value=6.1e-05 Score=70.38 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=45.4
Q ss_pred cccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 9 EIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 9 ~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
..+...++.++|+||+||.. +|+++||+.+.|+.. . .|+++|.+++..+....|. ++++
T Consensus 139 ~~~~l~~~~~~S~l~vPi~~-~~~l~GvL~~~~~~~-~-~~~~~e~~ll~~la~~~a~-ai~~ 197 (208)
T 2lb5_A 139 HVHYLKSMGVASSLVVPLMH-HQELWGLLVSHHAEP-R-PYSQEELQVVQLLADQVSI-AIAQ 197 (208)
T ss_dssp HHHHHHHTTCSEEEEEEEEE-TTEEEEEEEEEESCC-C-CCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHhcCCcEEEEEEEEE-CCEeEEEEEEeeCCC-C-CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 34444577899999999995 789999999999844 3 7999999986665555554 4544
No 41
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=97.51 E-value=8.2e-05 Score=66.61 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 14 TGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 14 tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.+..++|+||+||.. +|+++||+.+.++..+ .|+++|.+++..+..+.|. +++++
T Consensus 113 ~~~~~~s~l~vPL~~-~~~~iGvL~l~~~~~~--~f~~~d~~ll~~lA~~~a~-Ai~na 167 (177)
T 3k2n_A 113 HELGMRQIVLSPLRS-GGRVIGFLSFVSAEEK--LWSDGDKSLLSGVSSSIAI-AVSNA 167 (177)
T ss_dssp HHHTCCEEEEEEEEE-TTEEEEEEEEEESSCC--CCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHcCceEEEEEEEEE-CCEEEEEEEEEECCCC--CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 345579999999996 6799999999998766 7999999986665555444 56554
No 42
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=97.48 E-value=3.4e-05 Score=86.33 Aligned_cols=58 Identities=33% Similarity=0.603 Sum_probs=48.3
Q ss_pred cccccCCceeeeeEEeeeecC-CCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcc
Q psy8796 9 EIDRRTGYTTNSILCVPINSY-EGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATA 67 (536)
Q Consensus 9 ~~D~~tgy~TrSiLc~Pi~~~-~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~ 67 (536)
..|..+||.++|+||+||... +|+++||+.+.|+..+. .|+++|++++..++.+.+.+
T Consensus 105 ~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~-~ft~~d~~lL~~la~~~a~a 163 (691)
T 3ibj_A 105 QLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGD-LFTDEDEHVIQHCFHYTSTV 163 (691)
T ss_dssp HHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSC-CCCTTHHHHHHHHHHHHHHH
T ss_pred ccccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 456788999999999999973 48999999999998876 89999999877766555543
No 43
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=97.36 E-value=0.00029 Score=61.38 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=42.2
Q ss_pred CCCCCcccc-ccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCcc
Q psy8796 3 DPRFNNEID-RRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGED 71 (536)
Q Consensus 3 dprF~~~~D-~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~ 71 (536)
||+|....+ ...| .+|++|+||.. +|+++||+.+.++..+ .|+++|.+++..+..+.+. ++++
T Consensus 100 ~~~~~~~~~~~~~~--~~s~l~vPl~~-~~~~~Gvl~l~~~~~~--~f~~~~~~~l~~la~~~a~-al~~ 163 (171)
T 3ci6_A 100 HERFAYLPETGEEI--YNSFLGVPVMY-RRKVMGVLVVQNKQPQ--DFSEAAESFLVTLCAQLSG-VIAH 163 (171)
T ss_dssp STTC---------C--CCEEEEEEEEE-TTEEEEEEEEEESSCC--CCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred Ccchhccccccccc--cceEEEEeEEE-CCEEEEEEEEecCCCC--CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 556544333 2333 58999999995 7899999999999553 7999999986665554444 4544
No 44
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=97.34 E-value=6.6e-05 Score=68.76 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=39.9
Q ss_pred ceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 16 YTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 16 y~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
+.++|+||+||.. +|+++||+.+ +..... .|+++|.+++..+..+.|. +++++
T Consensus 128 ~~~~s~l~vPL~~-~~~~~GvL~l-~~~~~~-~f~~~d~~ll~~lA~q~ai-Ai~nA 180 (184)
T 3p01_A 128 NGIQSHVVIPITY-RNEMLGVLSL-QWQQPI-SLREDELTLIHLSAQLVAI-ALTSS 180 (184)
T ss_dssp HTCCEEEEEEEEE-TTEEEEEEEE-EESSCC-CCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hCccEEEEEEEEE-CCEEEEEEEe-CcCCCC-CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 3579999999996 7899999999 444444 8999999986665555444 55554
No 45
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=96.58 E-value=0.0024 Score=57.35 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=39.3
Q ss_pred eeeeEEeeeecCCCc-EEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 18 TNSILCVPINSYEGE-VIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 18 TrSiLc~Pi~~~~~~-vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
.+|++|+||.. +|+ ++||+.+.++.... .|+++|.+++..+... ++.++++.
T Consensus 107 ~~s~~~vPl~~-~~~~~~GvL~l~~~~~~~-~f~~~d~~lL~~la~~-~a~al~~a 159 (181)
T 2qyb_A 107 IKSFAHIPISR-KGEPPFGILSVFSRTIVG-LFNEPFLNLLESLAGQ-LAQAVKIV 159 (181)
T ss_dssp CCEEEEEEECC-TTSCCCEEEEEEESSCSS-CCCHHHHHHHHHHHHH-HHHHHHHC
T ss_pred cceEEEEEEEe-CCCeEEEEEEEecCCCCC-CCCHHHHHHHHHHHHH-HHHHHHHH
Confidence 68999999996 667 99999999944433 7999999976655444 44455554
No 46
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=95.62 E-value=0.016 Score=52.33 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=41.2
Q ss_pred eeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 19 NSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 19 rSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
-+||++|+.- .++||||+-+-|+.... +|+.+|..++.++++.+|. +++++
T Consensus 107 ~~ILgVPL~~-g~qVIGVLFaArR~~R~-~Fs~dEiALL~SLAahAAI-AIdnA 157 (162)
T 3eea_A 107 LCVLAVPMVV-RTQVIGAVFMARTRDNP-PFSDAETAIIRDLVSHAAL-VVSHM 157 (162)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEETTSC-CCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CeEEEeccee-CCEEEEEEEEecccccC-CCCHHHHHHHHHHHHHHHH-HHHHh
Confidence 4799999996 67999999999999886 8999999987776555554 45543
No 47
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=95.21 E-value=0.028 Score=51.68 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=44.7
Q ss_pred cCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccc
Q psy8796 13 RTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDT 72 (536)
Q Consensus 13 ~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~ 72 (536)
...+.+||+|++||.. +|+++|++.+-+..... .|+++|.+++..++...+. +++++
T Consensus 99 l~~~~v~S~L~vPi~~-~~~l~GlL~~~~~~~~r-~w~~~ei~ll~~lA~ql~i-Ai~qa 155 (171)
T 4glq_A 99 LRPLKVRANLVVPMVI-DDQLFGLLIAHQASEPR-QWQEIEIDQFSELASTGSL-VLERL 155 (171)
T ss_dssp HGGGTEEEEEEEEEEE-TTEEEEEEEEEEESSCC-CCCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHhcCCcEEEEEEEEE-CCEEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 3567889999999995 78999999999965544 7999999987776665555 45443
No 48
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=94.85 E-value=0.063 Score=52.08 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCC-CCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhh
Q psy8796 128 CRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAIL 206 (536)
Q Consensus 128 ~~Fl~~V~~~Y~~-~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAil 206 (536)
.+...-|+..+.+ .++|++.|...|+..+..+....+ .+...+.+||+.||++.+...+
T Consensus 8 ~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~-------~d~~~l~~AAlLHDig~~k~~~------------- 67 (223)
T 3djb_A 8 EKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEG-------GNRFIIEMAALLHDVADEKLNE------------- 67 (223)
T ss_dssp HHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTC-------SCHHHHHHHHTTHHHHC--CCS-------------
T ss_pred HHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHhhccccccCC-------------
Confidence 3333445555543 689999999999999998876432 2467788999999999754321
Q ss_pred cCCCccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcc
Q psy8796 207 YTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTD 255 (536)
Q Consensus 207 Yn~SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATD 255 (536)
. |..++..+..+|.+.+ +++++ ...|..+|.+.-
T Consensus 68 ---h--~~~ga~~a~~~L~~~g------~~~~~----i~~V~~~I~~Hs 101 (223)
T 3djb_A 68 ---S--EEAGMKKVSDWLEELH------VEEEE----SKHVLHIIANMS 101 (223)
T ss_dssp ---S--STTTHHHHHHHHHHTC------CCHHH----HHHHHHHTTCCC
T ss_pred ---c--HHHHHHHHHHHHHHCC------CCHHH----HHHHHHHHHHhC
Confidence 0 2345666778887644 45544 445777777763
No 49
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=94.66 E-value=0.13 Score=49.96 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCC-CCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhh
Q psy8796 127 LCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAI 205 (536)
Q Consensus 127 L~~Fl~~V~~~Y~~-~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAi 205 (536)
+.+...-|+..+.+ .++|++.|...|+..+..+....+ .+...+.+||+.||++-+...+ +
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~-------~d~~~l~~AalLHDig~~k~~~-------~---- 68 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEK-------VDVFVVQIAALFHDLIDDKLVD-------D---- 68 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHSTTC-----------------
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHhhccccccCC-------C----
Confidence 34444445555644 689999999999999988876432 2457788999999999653211 0
Q ss_pred hcCCCccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc
Q psy8796 206 LYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILST 254 (536)
Q Consensus 206 lYn~SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT 254 (536)
|..++..+..+|.+.+ +++++ ...|..+|.+.
T Consensus 69 -------~~~ga~~a~~~L~~~g------~~~~~----i~~V~~~I~~H 100 (223)
T 3dto_A 69 -------PETAKQQLIDWMEAAG------VPSQK----IDHTMDIINTI 100 (223)
T ss_dssp --------CHHHHHHHHHHHTTT------CCHHH----HHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHHHcC------CCHHH----HHHHHHHHHHc
Confidence 2235566778887643 45554 44566777665
No 50
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=94.43 E-value=0.18 Score=47.94 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=48.7
Q ss_pred CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHH
Q psy8796 140 PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQ 219 (536)
Q Consensus 140 ~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~ 219 (536)
..+||++.|...|+..+..+....+ .+...+.+|||.||++..-... + +..+...
T Consensus 21 ~~~~H~~~H~~rV~~~a~~ia~~~~-------~d~~~v~~AAlLHDig~~~~~~---------------~---~~~~a~~ 75 (209)
T 3b57_A 21 ETTGHDWSHIKRVWKLSKEIQSKEG-------GDLFTIELAALFHDYSDIKLTT---------------D---EQEATKT 75 (209)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHC-------SCHHHHHHHHHHTTCCC-------------------------CHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHhccCcccCCC---------------c---hHHHHHH
Confidence 4699999999999999988876432 2456788999999998642211 0 0125566
Q ss_pred HHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc
Q psy8796 220 CVMILNSDGNNIFQALSPHDYRIVMKLVENSILST 254 (536)
Q Consensus 220 ~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT 254 (536)
+..+|.+.+ ++++. ...|..+|.++
T Consensus 76 a~~~L~~~g------~~~~~----~~~V~~~I~~H 100 (209)
T 3b57_A 76 LINWMETKE------IPSEL----IKKIIRIIQSV 100 (209)
T ss_dssp HHHHHHHTT------CCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHCC------CCHHH----HHHHHHHHHHc
Confidence 667777643 55554 34456666655
No 51
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=94.18 E-value=0.053 Score=56.63 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=49.5
Q ss_pred hhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 110 mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
.|+++.-+.+.+.. ..-|...+-|-|.|...|++.+..+....++ ++. ..+.+|||+||+||.
T Consensus 27 ~fqRLr~i~QlG~~-----------~~v~p~a~~~r~~Hsl~V~~~a~~ia~~~~~----~~~--~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 27 PFQRLRYVKQLGLA-----------YLVFPSAQHTRFEHSLGVYHITERICESLKV----KEK--ELVKLAGLLHDLGHP 89 (371)
T ss_dssp HHHGGGGSBTTTTG-----------GGTSTTCCCBHHHHHHHHHHHHHHHHHHHTC----TTH--HHHHHHHHTTTTTCC
T ss_pred HHhCccccCccCcc-----------ceeeCCCCCChhHHHHHHHHHHHHHHHHcCC----CHH--HHHHHHHHHHhcCcc
Confidence 55665555555442 1145555678899999999999998876543 322 678899999999998
Q ss_pred CCCcccc
Q psy8796 190 GTNNAFQ 196 (536)
Q Consensus 190 G~nN~Fl 196 (536)
-++..|.
T Consensus 90 pfsh~~e 96 (371)
T 2hek_A 90 PFSHTTE 96 (371)
T ss_dssp SSSSCHH
T ss_pred ccccchH
Confidence 7765543
No 52
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=93.89 E-value=0.041 Score=59.23 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=51.3
Q ss_pred HhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCc-hhhHHHHHHHHHHHHhhchh--------hccCCHHHHHHHHH
Q psy8796 109 RMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHN-WRHALNVAQTMFAMLKTGKM--------ERFMSDLEILGLLV 179 (536)
Q Consensus 109 ~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN-~~HA~dV~Q~~~~lL~~~~l--------~~~ls~lE~lAllv 179 (536)
.-|+++.-+.+.+... --| +-..|+ +.|+.-|+|.+..+...-.. ...+++.|..++.+
T Consensus 62 ~~FqRLr~i~QlG~~~-----------~v~-pga~HTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 129 (480)
T 3irh_A 62 AEVQRLRRIKQLGTSS-----------FTF-HGAEHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLC 129 (480)
T ss_dssp HHHHGGGGSBSSTTGG-----------GTS-TTCCCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHH
T ss_pred HHHHhhhhhhcccccc-----------eec-CCCCcCHHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHH
Confidence 4667776666655420 012 234677 79999999999887764321 11256677788899
Q ss_pred HhhccCCCCCCCCcccc
Q psy8796 180 ACLCHDLDHRGTNNAFQ 196 (536)
Q Consensus 180 AALcHDvdHpG~nN~Fl 196 (536)
||||||+|||-++-.+.
T Consensus 130 AaLlHDIGH~PFsH~~E 146 (480)
T 3irh_A 130 AALLHDVGHGPYSHTFE 146 (480)
T ss_dssp HHHHTTTTCCTTHHHHH
T ss_pred HHHHhccCCCCccchhh
Confidence 99999999997765554
No 53
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=93.74 E-value=0.15 Score=49.42 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=55.9
Q ss_pred HHHHHcCC-CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCC
Q psy8796 132 LSVKKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTS 210 (536)
Q Consensus 132 ~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~S 210 (536)
..|+..+. ..+||++.|...|+..+..+....+ .+...+.+||+.||++-+-.++
T Consensus 17 ~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~-------~d~~ll~lAAlLHDigk~k~~~----------------- 72 (231)
T 2pjq_A 17 TYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEG-------ANLNLTLAAAWLHDVIDDKLMA----------------- 72 (231)
T ss_dssp HHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHT-------CCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHcCCcccCCC-----------------
Confidence 33444443 4689999999999999988876432 2456788999999998532111
Q ss_pred ccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcc
Q psy8796 211 TMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTD 255 (536)
Q Consensus 211 VLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATD 255 (536)
-|..+...+..+|...+ ++++. .+.|..+|.++-
T Consensus 73 -~~~~ga~~a~~~L~~~g------~~~~~----~~~V~~~I~~Hs 106 (231)
T 2pjq_A 73 -NPAKAHQDLIVQLNAQN------VTADD----QTAIFAIIDHMS 106 (231)
T ss_dssp -----CHHHHHHHHHTTT------CCHHH----HHHHHHHHTSCC
T ss_pred -hHHHHHHHHHHHHHHCC------CCHHH----HHHHHHHHHHcC
Confidence 01246667778887643 45543 445666776653
No 54
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=92.98 E-value=0.087 Score=57.28 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=42.6
Q ss_pred CCCCc-hhhHHHHHHHHHHHHhhchh---hccCCHHHHHHHHHHhhccCCCCCCCCcccc
Q psy8796 141 VKYHN-WRHALNVAQTMFAMLKTGKM---ERFMSDLEILGLLVACLCHDLDHRGTNNAFQ 196 (536)
Q Consensus 141 ~pYHN-~~HA~dV~Q~~~~lL~~~~l---~~~ls~lE~lAllvAALcHDvdHpG~nN~Fl 196 (536)
...|+ +.|+.-|+|.+..+...-.. .-.++..|..++.+|||+||+|||-++=.|.
T Consensus 61 ga~hTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiGH~PFsH~~E 120 (528)
T 3u1n_A 61 GASHNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFD 120 (528)
T ss_dssp TCCCBHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTTCBTTBHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccCCCCccchhh
Confidence 34576 78999999999887764321 1125677888899999999999998876654
No 55
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=92.76 E-value=0.12 Score=52.41 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=36.0
Q ss_pred ceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc
Q psy8796 16 YTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT 66 (536)
Q Consensus 16 y~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~ 66 (536)
-.+|+++|+|+.+.+|+++||+.+-+..-- .|+++..+++.-++.|.+.
T Consensus 100 ~~sryL~viPLld~~g~i~Gvl~V~~mpF~--a~~~~~LqlL~VL~g~~ad 148 (298)
T 4eu0_A 100 AHSAAAVCVPLVDTDGRILALLAVEQMPFF--VFNERTFSLLAILAGHIAD 148 (298)
T ss_dssp ----CCEEEEEECTTSCEEEEEEEEECCGG--GCSHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEEeecCCCcEEEEEEEecCCcc--ccCHhHHHHHHHHHHHHHH
Confidence 367999999999889999999999997433 6888888875555555544
No 56
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=92.32 E-value=0.21 Score=43.80 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=36.0
Q ss_pred eeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhh
Q psy8796 17 TTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHA 65 (536)
Q Consensus 17 ~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a 65 (536)
.-++.+++||+. +|++||+|.|+ .++. .|++.+.+++..++.+.+
T Consensus 74 ~~~s~ii~PI~~-~g~viG~i~l~-~~~~--~~~~~~~~la~gla~lls 118 (123)
T 2w1r_A 74 DMNSYTVGPIVA-NGDPIGAVVIF-SKDQ--TMGEVEHKAVETAAGFLA 118 (123)
T ss_dssp EESEEEEEEEEE-TTEEEEEEEEE-ESSS--CCCHHHHHHHHHHHHHHC
T ss_pred CeeEEEEEEEEE-CCEEEEEEEEE-EcCC--CCCHHHHHHHHHHHHHHH
Confidence 347999999995 78999999999 4444 499999998877666554
No 57
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=92.32 E-value=0.12 Score=54.59 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=50.3
Q ss_pred CCc-hhhHHHHHHHHHHHHhhchhh-ccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHH
Q psy8796 143 YHN-WRHALNVAQTMFAMLKTGKME-RFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQC 220 (536)
Q Consensus 143 YHN-~~HA~dV~Q~~~~lL~~~~l~-~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~ 220 (536)
-|+ |.|..-|+|.+..+...-+.. ..+++.+.-.+.+|||+||+|||-++=.+..... -.-.|-.+.
T Consensus 53 ~htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh~PfsH~~E~~~~-----------~~~~He~~s 121 (410)
T 2q14_A 53 QHTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGHGPFSHVLEDTIV-----------QGVSHEEIS 121 (410)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTCCTTHHHHHTTTS-----------TTCCHHHHH
T ss_pred CCCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCccccccHHhhc-----------CCCCHHHHH
Confidence 344 789999999999887754321 2367778889999999999999977644432211 024576666
Q ss_pred HHHHhc
Q psy8796 221 VMILNS 226 (536)
Q Consensus 221 ~~iL~~ 226 (536)
..++..
T Consensus 122 ~~ii~~ 127 (410)
T 2q14_A 122 LMLMER 127 (410)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 58
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=92.22 E-value=0.44 Score=45.88 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=52.0
Q ss_pred CCCCCchhhHHHHHHHHHHH-HhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhH
Q psy8796 140 PVKYHNWRHALNVAQTMFAM-LKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFD 218 (536)
Q Consensus 140 ~~pYHN~~HA~dV~Q~~~~l-L~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a 218 (536)
..+||++.|...|+..+..+ ....+ .+...+.+|||.||++-+-.. + +..+..
T Consensus 21 ~~~~H~~~H~~rV~~~a~~i~a~~~~-------~d~~~l~lAAlLHDigk~~~~--------~-----------~~~ga~ 74 (225)
T 2qgs_A 21 DTTGHDIAHVERVYNNACYIAKRENI-------TDTLVIELSSLLHDTVDSKLT--------D-----------EILAYD 74 (225)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHTTC-------SCCHHHHHHHHHTTTTCCSSS--------C-----------HHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHhhccC-------CCHHHHHHHHHHHcCCCCCCC--------c-----------HHHHHH
Confidence 46999999999999998887 54322 145678899999999975221 0 112555
Q ss_pred HHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhc
Q psy8796 219 QCVMILNSDGNNIFQALSPHDYRIVMKLVENSILST 254 (536)
Q Consensus 219 ~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILAT 254 (536)
.+..+|.+-+ ++++. .+.|..+|.++
T Consensus 75 ~a~~~L~~~g------~~~~~----i~~V~~~I~~H 100 (225)
T 2qgs_A 75 QLKQFLSTLD------LSSEI----SQQVLYIIKHM 100 (225)
T ss_dssp HHHHHHHTTT------CCHHH----HHHHHHHHHTT
T ss_pred HHHHHHHHCC------CCHHH----HHHHHHHHHHc
Confidence 6667776533 45544 34466666653
No 59
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=92.18 E-value=0.13 Score=54.95 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCCCc-hhhHHHHHHHHHHHHhhchh------hccCCHHHHH-HHHHHhhccCCCCCCCCccccccccchhhhhcCC---
Q psy8796 141 VKYHN-WRHALNVAQTMFAMLKTGKM------ERFMSDLEIL-GLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT--- 209 (536)
Q Consensus 141 ~pYHN-~~HA~dV~Q~~~~lL~~~~l------~~~ls~lE~l-AllvAALcHDvdHpG~nN~Fli~t~spLAilYn~--- 209 (536)
-.+|+ +.|..-|+|.+-.+...-.. ...+++.++- .+-.|||+||+|||-++=.+...-+.-... ++.
T Consensus 58 ~~~htR~~Hsl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~a~L~HDiGH~PFgH~gE~~l~~~~~~-~gg~~~ 136 (451)
T 2pgs_A 58 DHIHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSGEDAIRNWFNQ-AAGRGW 136 (451)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHH-HHTTTT
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHhhccCCCCccccHHHHHHHHHHh-cCCcch
Confidence 45677 79999999998776654321 1234555654 677999999999998876655443321111 111
Q ss_pred -Ccc---------ccchhHHHHHHHhc
Q psy8796 210 -STM---------EHHHFDQCVMILNS 226 (536)
Q Consensus 210 -SVL---------EnhH~a~~~~iL~~ 226 (536)
+.| --.|-++.++|+..
T Consensus 137 ~~~l~~~~~~D~~~fehnaqs~Ril~~ 163 (451)
T 2pgs_A 137 LDAMSETERNDFLNFEGNAQGFRVLTQ 163 (451)
T ss_dssp TTTSCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hhhcchhhhccccCCchhHHHHHHHHH
Confidence 011 14678888888766
No 60
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=90.98 E-value=0.26 Score=46.99 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHcCC-CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCC
Q psy8796 134 VKKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188 (536)
Q Consensus 134 V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdH 188 (536)
++..+. ..++|.|.|...|+..+..+....+ .+...+.+|||.||+|-
T Consensus 22 v~~~~~~~~~~h~~~H~~rV~~~a~~la~~~~-------~d~~~l~~AaLLHDIg~ 70 (220)
T 2pq7_A 22 REAFKDYDDPAHDISHTFRVMENASEIASREK-------CDLQKAIIAALLHDIKR 70 (220)
T ss_dssp HHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHT-------CCHHHHHHHHHHTTTTH
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHcCCC
Confidence 333343 5799999999999999988876432 14467889999999953
No 61
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=90.60 E-value=0.22 Score=53.20 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=53.0
Q ss_pred CCCCCc-hhhHHHHHHHHHHHHhhchh--hcc---------CCHHHH-HHHHHHhhccCCCCCCCCccccccccchhhhh
Q psy8796 140 PVKYHN-WRHALNVAQTMFAMLKTGKM--ERF---------MSDLEI-LGLLVACLCHDLDHRGTNNAFQTKTESPLAIL 206 (536)
Q Consensus 140 ~~pYHN-~~HA~dV~Q~~~~lL~~~~l--~~~---------ls~lE~-lAllvAALcHDvdHpG~nN~Fli~t~spLAil 206 (536)
+-.+|+ +.|..-|+|..-.+...-.. ... +++.++ -.+-.|||+||+|||-++=.+...-+.-...
T Consensus 59 ~~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~HDiGH~PFgH~gE~~l~~~~~~- 137 (444)
T 3bg2_A 59 TDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIGNPPFGHSGEKAIGEFFKN- 137 (444)
T ss_dssp CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHT-
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHhcccCCCCccccHHHHHHHHHHh-
Confidence 456788 79999999998777654321 111 233343 4677999999999998876555433221111
Q ss_pred cCC-Cc------------cccchhHHHHHHHhc
Q psy8796 207 YTT-ST------------MEHHHFDQCVMILNS 226 (536)
Q Consensus 207 Yn~-SV------------LEnhH~a~~~~iL~~ 226 (536)
++. .. .--.|-++.++|+..
T Consensus 138 ~gg~~~~~~l~~~~~~D~~~Fehnaqs~Ril~~ 170 (444)
T 3bg2_A 138 GYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQ 170 (444)
T ss_dssp SGGGGGGGGSCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred ccccchhhccchhhhccccCCchHHHHHHHHHH
Confidence 111 00 124688888988876
No 62
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=88.90 E-value=0.87 Score=47.56 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=47.3
Q ss_pred CCc-hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCCCccccchhHHHH
Q psy8796 143 YHN-WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCV 221 (536)
Q Consensus 143 YHN-~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~SVLEnhH~a~~~ 221 (536)
||| +.|..-|+|.+..+...-++. + -.+-.|||+||+|||-++-.+...-+ .... ..---.|-++++
T Consensus 73 ~~tRl~HSl~Va~iar~ia~~l~l~----~---~l~~~a~LlHDiGh~PFgH~~E~~l~----~~~~-~~ggf~Hn~~s~ 140 (376)
T 2dqb_A 73 YRTRLTHTLEVAQVSRSIARALGLN----E---DLTEAIALSHDLGHPPFGHTGEHVLN----ALMQ-DHGGFEHNAQAL 140 (376)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCC----H---HHHHHHHHHTTTTCCSSTTHHHHHHH----HHTT-TTTCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCC----H---HHHHHHHHHHhcCCCccccchHHHHH----HHhh-ccCCCcHHHHHH
Confidence 465 489999999999998765532 2 25669999999999976654432211 1000 001135888889
Q ss_pred HHHhc
Q psy8796 222 MILNS 226 (536)
Q Consensus 222 ~iL~~ 226 (536)
+++.+
T Consensus 141 ril~~ 145 (376)
T 2dqb_A 141 RILTH 145 (376)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88876
No 63
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=84.52 E-value=0.56 Score=43.63 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcC-CCccccchhHHHHH
Q psy8796 144 HNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVM 222 (536)
Q Consensus 144 HN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn-~SVLEnhH~a~~~~ 222 (536)
+.|.|+..|+..+..+.+..+ +++. -+.+|||.||+|.......++.+....-..+.. .......|......
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g----~~~~---~~~~agLLHDIGk~~~~~~il~~~~~~~~~l~~~e~~~~~~H~~~G~~ 90 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYG----ADQQ---KAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAY 90 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----CCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC----cCHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCHHHHHHHhhHHHHHHH
Confidence 579999999999998877654 3433 268999999999976544333221100000000 01233458877778
Q ss_pred HHhc
Q psy8796 223 ILNS 226 (536)
Q Consensus 223 iL~~ 226 (536)
+|.+
T Consensus 91 il~~ 94 (188)
T 2o08_A 91 YVRE 94 (188)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 64
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=84.50 E-value=0.25 Score=48.40 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=29.3
Q ss_pred CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 140 PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 140 ~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
..+||++.|...|+..+..+....+ .+...+.+||+.||++-.
T Consensus 21 ~~~~H~~~H~~rV~~~a~~ia~~~~-------~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 21 QDAAHDVCHFRRVWATAQKLAADDD-------VDMLVILTACYFHDIVSL 63 (239)
T ss_dssp ------CCHHHHHHHHHHHHTTTSC-------SCTTHHHHHHHHTTTTC-
T ss_pred CCCCccHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHhhcccc
Confidence 3789999999999999888876432 345678899999999763
No 65
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=82.83 E-value=1.6 Score=40.64 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccch
Q psy8796 123 PYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESP 202 (536)
Q Consensus 123 ~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~sp 202 (536)
+.+.+..++...... +.|.|+..|+..+..+.+..+ +++. -+.+|||.||+|.......++....
T Consensus 4 ~~~~~~~~l~~~~~~------~~~~Hs~~Va~~A~~lA~~~g----~d~~---~~~~AgLLHDiGk~~~~~~il~~~~-- 68 (190)
T 3ccg_A 4 SYDKITDYLMNNLGE------KRYKHSLGVMDTAVRLAGIYN----EDTE---KARIAGLVHDCAKKLPGEKIIEICT-- 68 (190)
T ss_dssp CHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHT----CCHH---HHHHHHHHTTTTTTSCHHHHHHHHH--
T ss_pred CHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHC----cCHH---HHHHHHHHHHhcCCCCHHHHHHHHH--
Confidence 345555666554443 369999999999998877654 3433 2689999999999765443332211
Q ss_pred hhhhcCC--C-----ccccchhHHHHHHHhc
Q psy8796 203 LAILYTT--S-----TMEHHHFDQCVMILNS 226 (536)
Q Consensus 203 LAilYn~--S-----VLEnhH~a~~~~iL~~ 226 (536)
-++. + .....|......+|.+
T Consensus 69 ---~~~~~l~~~E~~~~~~~H~~~Ga~il~~ 96 (190)
T 3ccg_A 69 ---NEGYELGDEDIRNSYLLHGLAGRILAKK 96 (190)
T ss_dssp ---HTTCCCCHHHHTTTTC-CHHHHHHHHHH
T ss_pred ---HcCCCCCHHHHhHHHcchHHHHHHHHHH
Confidence 1111 1 1223488888888876
No 66
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=76.53 E-value=1.8 Score=40.50 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=45.6
Q ss_pred CchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcC-C-Cccc----cchh
Q psy8796 144 HNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-T-STME----HHHF 217 (536)
Q Consensus 144 HN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn-~-SVLE----nhH~ 217 (536)
+.|.|+..|+..+..+.+..++ ++ + -+.+|||.||+|.......++.+.. -++ + +..| ..|.
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~----d~-~--~~~~AgLLHDIGK~~~~~~il~~~~-----~~~~~l~~~E~~~~~~H~ 93 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGY----DK-E--KAGLAALLHDYAKELSDDEFLRLID-----KYQPDPDLKKWGNNIWHG 93 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----CH-H--HHHHHHHHTTTTTTCCHHHHHHHHH-----HHCCCTGGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCc----CH-H--HHHHHHHHHHcCCcCCHHHHHHHHH-----hcCCCCCHHHHHHHhccH
Confidence 4799999999999988776543 43 3 2689999999999865443332211 011 0 1122 3477
Q ss_pred HHHHHHHhc
Q psy8796 218 DQCVMILNS 226 (536)
Q Consensus 218 a~~~~iL~~ 226 (536)
.....+|++
T Consensus 94 ~~G~~ll~~ 102 (196)
T 2ogi_A 94 LVGIYKIQE 102 (196)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
No 67
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=68.58 E-value=11 Score=38.10 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred CCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHH-HHHHhhccCCCCCCCCccc
Q psy8796 142 KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILG-LLVACLCHDLDHRGTNNAF 195 (536)
Q Consensus 142 pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lA-llvAALcHDvdHpG~nN~F 195 (536)
....|.|+..|+..+..+.+..+ +++.++.. +.+|||.||+|--......
T Consensus 164 ~~~~~~Hs~~Va~la~~la~~lg----l~~~~~~~~l~~aaLLHDIGk~~ip~~i 214 (328)
T 3tm8_A 164 DKTISHHGVTVSTLSIALAQKLG----ITDPKKTQLLTLGALLHDYGHHHSPLNL 214 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTGGGTTCSCCC
T ss_pred CchHHHHHHHHHHHHHHHHHHcC----cCHHHHHHHHHHHHHHhcCCcccCCHHH
Confidence 34579999999999988877654 57788888 9999999999966554433
No 68
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=64.33 E-value=6.6 Score=41.06 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=31.0
Q ss_pred hhHHH-HHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 147 RHALN-VAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 147 ~HA~d-V~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
.|... |+..+-.+...- ....+.|..+++.|||+||+|-.
T Consensus 78 eHtLerVa~~A~~l~~~Y---P~~~~~Er~~l~~aALLHDIGKl 118 (393)
T 3kq5_A 78 NEGLLRGVNSLNHYIQNH---PEATPLERYALFSAGLLLEVAHA 118 (393)
T ss_dssp HHHHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhccchh
Confidence 78999 887766665543 23456789999999999999965
No 69
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=44.12 E-value=12 Score=36.53 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCC
Q psy8796 145 NWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189 (536)
Q Consensus 145 N~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHp 189 (536)
-|.|+..|+.++..+.+.......+...+.-.+++|+|.||+|--
T Consensus 118 ~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~~~~laGLLHdiGkl 162 (281)
T 3i7a_A 118 VWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGAL 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHCCHH
Confidence 489999999998888765311000122233346899999999853
No 70
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=36.67 E-value=57 Score=30.40 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=33.0
Q ss_pred eeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhh
Q psy8796 19 NSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYH 64 (536)
Q Consensus 19 rSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~ 64 (536)
.+.++.||.. .|.+||.+-++.|..+ |++.+.+++...+++-
T Consensus 131 ~~~~i~pI~~-~gd~~Gavi~~~~~~~---~~~~e~k~a~~aa~fL 172 (178)
T 2w1t_A 131 NSYTVGPIVA-NGDPIGAVVIFSKDQT---MGEVEHKAVETAAGFL 172 (178)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEEESSSC---CCHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEe-CCCceEEEEEEecCCC---CCHHHHHHHHHHHHHH
Confidence 4788899995 8899999999998644 8988888766555443
No 71
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=36.45 E-value=25 Score=30.05 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=14.7
Q ss_pred EEeeeecCCCcEEEEEEE
Q psy8796 22 LCVPINSYEGEVIGVAQI 39 (536)
Q Consensus 22 Lc~Pi~~~~~~vIGViql 39 (536)
..+||++.+|++|||+-+
T Consensus 104 ~~~PV~~~~g~viGvv~v 121 (131)
T 1p0z_A 104 GKSPIQDATGKVIGIVSV 121 (131)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred EEEeEECCCCCEEEEEEE
Confidence 346999878999999875
No 72
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=34.88 E-value=27 Score=30.52 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=19.6
Q ss_pred eEEeeeecC---------CCcEEEEEEEEecCC
Q psy8796 21 ILCVPINSY---------EGEVIGVAQIINKTD 44 (536)
Q Consensus 21 iLc~Pi~~~---------~~~vIGViqliNK~~ 44 (536)
-+..||.+. .++|+||+++.=...
T Consensus 94 ~~~~Pi~n~~~C~~CH~~~~~vLG~l~v~~sl~ 126 (134)
T 3b47_A 94 SFIVPLANEVRCQSCHEQGARFNGAMLLTTSLE 126 (134)
T ss_dssp EEEEEEECCTTGGGTSCTTCSEEEEEEEEEECS
T ss_pred EEEEeccCCCCchhhhCCCCeEEEEEEEEEchH
Confidence 468899997 789999999976543
No 73
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=32.16 E-value=31 Score=29.97 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.6
Q ss_pred EEeeeecCCCcEEEEEEE
Q psy8796 22 LCVPINSYEGEVIGVAQI 39 (536)
Q Consensus 22 Lc~Pi~~~~~~vIGViql 39 (536)
..+||++.+|++|||+-+
T Consensus 109 ~~~PV~~~~g~viGvv~v 126 (142)
T 3by8_A 109 VFTPIYDENHKQIGVVAI 126 (142)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred EEEeEEcCCCCEEEEEEE
Confidence 345999767899999876
No 74
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=31.22 E-value=33 Score=31.15 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=22.3
Q ss_pred cccCCceeeeeEEeeeecCCCcEEEEEEEEec
Q psy8796 11 DRRTGYTTNSILCVPINSYEGEVIGVAQIINK 42 (536)
Q Consensus 11 D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK 42 (536)
+..+|- .--.+++||.+.+|+++||+-+-=.
T Consensus 118 ~~~~g~-~~i~ia~pi~~~~g~~~Gvl~~~i~ 148 (217)
T 4dah_A 118 SRITGQ-PIFTICVPVLDSKRNVTDYLVAAIQ 148 (217)
T ss_dssp CTTTCS-EEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cCCCCC-EEEEEEEEEECCCCCEEEEEEEEEc
Confidence 444443 3346899999888999999987544
No 75
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=30.24 E-value=23 Score=35.02 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCc
Q psy8796 146 WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNN 193 (536)
Q Consensus 146 ~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN 193 (536)
|.|+.-|+.++..+.+..+. .+ .-.+++||+.||+|--+...
T Consensus 120 ~~hs~~va~~a~~la~~~~~----~~--~~~~~~agllHDIGkl~l~~ 161 (305)
T 3hc1_A 120 WAHSLGVARIAKLIAERTGF----LN--PVNVYVAGLLHDVGEVFINF 161 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----SC--HHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC----CC--HHHHHHHHHHHHhhHHHHHH
Confidence 89999999999888876443 22 33567999999999776654
No 76
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=29.52 E-value=89 Score=28.00 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=25.0
Q ss_pred eeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHH
Q psy8796 20 SILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDI 54 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~ 54 (536)
+-+++||.+.+|+++|+|-+.--.. .|++++.
T Consensus 127 ~~iAaPv~~~~g~~~aalsv~~p~~---r~~~~~~ 158 (182)
T 2o99_A 127 RCLAACIFDEHREPFAAISISGPIS---RITDDRV 158 (182)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETT---TSCGGGH
T ss_pred EEEEEEEECCCCCEEEEEEEEeehH---hCCHHHH
Confidence 5688999999999999999987542 4676554
No 77
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=29.07 E-value=40 Score=29.59 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=19.0
Q ss_pred eeEEeeeecCCCcEEEEEEEEec
Q psy8796 20 SILCVPINSYEGEVIGVAQIINK 42 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliNK 42 (536)
.+-.+||++.+|+++||++++.-
T Consensus 107 ~v~~~Pi~d~~G~~~G~vev~~D 129 (151)
T 2qkp_A 107 YVTYAAVRDQAGDFQGVLEYVQD 129 (151)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEEEE
Confidence 44478999888999999998764
No 78
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=26.93 E-value=1e+02 Score=28.15 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=25.1
Q ss_pred eeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHH
Q psy8796 20 SILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDI 54 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~ 54 (536)
+-+++||.+.+|+++|+|-+.--.. .|++++.
T Consensus 143 ~~iAaPI~~~~g~~~aalsvs~p~~---r~~~~~~ 174 (198)
T 1tf1_A 143 NCIASAIYDDVGSVVAAISISGPSS---RLTEDRF 174 (198)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETT---TSCGGGH
T ss_pred eEEEEEEECCCCCEEEEEEEeeehH---hCCHHHH
Confidence 5688999999999999999987542 4666554
No 79
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=26.06 E-value=1e+02 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=24.4
Q ss_pred eeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHH
Q psy8796 20 SILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDI 54 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~ 54 (536)
+-+++||.+.+|+++|+|-+.=-.. .|+.++.
T Consensus 123 ~~vAaPv~~~~g~~~~alsv~~p~~---r~~~~~~ 154 (181)
T 1ysp_A 123 RCIAVPVFDRFGVVIAGLSISFPTL---RFSEERL 154 (181)
T ss_dssp EEEEEEEECTTSCEEEEEEECCBSS---SCCHHHH
T ss_pred EEEEEEEECCCCCEEEEEEEEeehH---hcCHHHH
Confidence 5688999999999999998875432 4776554
No 80
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=25.55 E-value=35 Score=33.50 Aligned_cols=41 Identities=10% Similarity=-0.141 Sum_probs=30.7
Q ss_pred chhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCC
Q psy8796 145 NWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGT 191 (536)
Q Consensus 145 N~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~ 191 (536)
=|.|+..|+..+..+... +...+.--+++|||.||+|-...
T Consensus 125 ~~~hs~~va~~a~~la~~------~~~~~~e~a~~aGLLHDIGkl~l 165 (297)
T 1vqr_A 125 FLKTCNEEATFIANWLND------EDKKLSHLLVPCAMLLRLGIVIF 165 (297)
T ss_dssp HHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------ccCCCHHHHHHHHHHHHccHHHH
Confidence 478999998888777653 23455667889999999986654
No 81
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=24.45 E-value=99 Score=27.44 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=25.1
Q ss_pred eeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHH
Q psy8796 20 SILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDI 54 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~ 54 (536)
+-+++||.+.+|+++|+|-+.=-.. .|+++..
T Consensus 122 ~~iAaPI~~~~g~~~aalsv~~p~~---r~~~~~~ 153 (176)
T 3obf_A 122 VGVASPVYDHRGNMVASVLIPAPKF---RVSQDTL 153 (176)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEGG---GCCHHHH
T ss_pred EEEEEEEECCCCCEEEEEEeEeehh---hCCHHHH
Confidence 5689999999999999998876532 4777664
No 82
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=24.38 E-value=75 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=22.8
Q ss_pred ceeeeeEEeeeecCCCcEEEEEEEEec
Q psy8796 16 YTTNSILCVPINSYEGEVIGVAQIINK 42 (536)
Q Consensus 16 y~TrSiLc~Pi~~~~~~vIGViqliNK 42 (536)
+..-++-..||.+.+|+|.||+.++.-
T Consensus 117 ~~~~~~ti~Pl~d~~G~v~gv~~ii~D 143 (152)
T 3mxq_A 117 QMYQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEE
Confidence 556688889999999999999988753
No 83
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=23.37 E-value=2.2e+02 Score=26.67 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=64.7
Q ss_pred CceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhcccCccccchhcccCCccccccccceeee
Q psy8796 15 GYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFI 94 (536)
Q Consensus 15 gy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~~~~e~~~kLl~~~ip~~~~~~l~s~~F~ 94 (536)
.|-.++-+++|+.+.+ ..+|++-+.... . +|++.+...+...+...+....+...++........ .
T Consensus 107 ~~gl~~G~~~p~~~~~-g~~g~ls~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~ 172 (237)
T 3szt_A 107 HHGIRHGWSIPVRGKY-GLISMLSLVRSS--E-SIAATEILEKESFLLWITSMLQATFGDLLAPRIVPE----------S 172 (237)
T ss_dssp HTTCCEEEEEEEECGG-GCEEEEEEEESS--S-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG----------G
T ss_pred HcCCCCEEEEEeeCCC-CCeEEEEEecCC--C-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC----------C
Confidence 3455699999999855 578888887653 2 688877654333222222221122222221000000 1
Q ss_pred cCCCCchhh--hHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCCCCCCCchhhHH
Q psy8796 95 DFDLSDMDT--CRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHAL 150 (536)
Q Consensus 95 ~~~l~~~el--~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~~~pYHN~~HA~ 150 (536)
.-.|++.|. +..+..-...-.+-+.++|+..++...+..+.+... -+|..+++
T Consensus 173 ~~~Lt~re~~vl~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~---~~~~~~~~ 227 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLN---SSNKAEAT 227 (237)
T ss_dssp GCCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT---CSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 123454442 222222223345667799999999999988887654 34555554
No 84
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=22.19 E-value=51 Score=30.90 Aligned_cols=57 Identities=16% Similarity=0.029 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHH--HHHHHHhhccCCCC
Q psy8796 128 CRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEI--LGLLVACLCHDLDH 188 (536)
Q Consensus 128 ~~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~--lAllvAALcHDvdH 188 (536)
.+=+..+...|. -+-.||--|.+++-.+.....-...+++.+. --+-.||+.||||-
T Consensus 7 ~~sv~~l~~ry~----vd~~ha~~V~~~A~~Lf~~l~~~~~l~~~~~~~~lL~~Aa~LHdIG~ 65 (209)
T 3rf0_A 7 QRTAKSLADHYN----IDREQARRVLETTEQLYTQWLAQNTKLVQPQLEALLKWAAMLHEVGL 65 (209)
T ss_dssp HHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHccc
Confidence 333455555564 2457898888888777654221112344555 67789999999984
No 85
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=21.59 E-value=52 Score=26.57 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.9
Q ss_pred eeeEEeeeecCCCcEEEEEE
Q psy8796 19 NSILCVPINSYEGEVIGVAQ 38 (536)
Q Consensus 19 rSiLc~Pi~~~~~~vIGViq 38 (536)
+.+=++|+.+.+|+++|+|-
T Consensus 91 ~~~~~l~Vvd~~g~~~Givt 110 (122)
T 3kpb_A 91 YNISGVPVVDDYRRVVGIVT 110 (122)
T ss_dssp HTCSEEEEECTTCBEEEEEE
T ss_pred hCCCeEEEECCCCCEEEEEe
Confidence 34457899998899999974
No 86
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=21.24 E-value=41 Score=32.97 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCC
Q psy8796 146 WRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRG 190 (536)
Q Consensus 146 ~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG 190 (536)
|.|+..|+.++..+.+..+.. + .-.+++|+|.||+|-..
T Consensus 110 ~~hs~~~A~~a~~la~~~~~~----~--~~~~~~agLLhdiGkl~ 148 (288)
T 3ljx_A 110 WQKSLARAVALQSITAQASTV----A--PKEAFTLGLLADVGRLA 148 (288)
T ss_dssp HHHHHHHHHHHHHHHHTSSSS----C--HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC----C--HHHHHHHHHHHhccHHH
Confidence 899999999988887654321 2 33468999999998543
No 87
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=20.37 E-value=69 Score=29.58 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=18.1
Q ss_pred eeEEeeeecCCCcEEEEEEEEe
Q psy8796 20 SILCVPINSYEGEVIGVAQIIN 41 (536)
Q Consensus 20 SiLc~Pi~~~~~~vIGViqliN 41 (536)
=.++.||.+.+|+++||+-+.=
T Consensus 128 i~~~~pi~~~~g~~~Gvl~~~i 149 (254)
T 3lif_A 128 FVVSRRLETTDGKFFGVVVATI 149 (254)
T ss_dssp EEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEEeeeeCCCCCEeEEEEEEE
Confidence 3578999988899999987654
No 88
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=20.18 E-value=58 Score=29.74 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=29.5
Q ss_pred CCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCC
Q psy8796 141 VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLD 187 (536)
Q Consensus 141 ~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvd 187 (536)
.++--+.|..-|+..++.+-... ...-...+..-++.+||.||+.
T Consensus 29 ~~esvaeHs~rVa~~A~~la~~~--~~~~~~~d~~~v~~~aLlHD~~ 73 (177)
T 2cqz_A 29 EPESIADHSFGVAFITLVLADVL--EKRGKRIDVEKALKMAIVHDLA 73 (177)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHH--HHTTCCCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHhchH
Confidence 36667899999999888776531 0000123445566899999983
Done!