RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8796
(536 letters)
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase;
HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB:
1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A*
3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A*
2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Length = 347
Score = 427 bits (1099), Expect = e-148
Identities = 165/336 (49%), Positives = 228/336 (67%), Gaps = 2/336 (0%)
Query: 56 VALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECD 115
L H + + L +PSAQ + F+F DF+LSD++T TIRMF + +
Sbjct: 12 SGLVPRGSHMEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLN 71
Query: 116 LVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEI 174
LV+ F + ++VLCRW+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEI
Sbjct: 72 LVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEI 131
Query: 175 LGLLVACLCHDLDHRGTNNAFQTKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQ 233
L LL+A L HDLDH G +N F T S LA++Y S +EHHHFDQC+MILNS GN I
Sbjct: 132 LALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILS 191
Query: 234 ALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTA 293
LS +Y+ +K+++ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTA
Sbjct: 192 GLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTA 251
Query: 294 CDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFID 353
CD+ AI KPW +Q ++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID
Sbjct: 252 CDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFID 311
Query: 354 VICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAE 389
ICL LY+ ++ PL DG +NR+ WQ LAE
Sbjct: 312 AICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALAE 347
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 405 bits (1042), Expect = e-139
Identities = 124/337 (36%), Positives = 196/337 (58%), Gaps = 7/337 (2%)
Query: 62 SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFH 121
S+ + + E+ + L++ T+P + F F +M I +++
Sbjct: 1 SHMSICTSEEWQGLMQFTLPVRLCKEIELFHFDIGPFENM---WPGIFVYMVHRSCGTSC 57
Query: 122 IPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVAC 181
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+AC
Sbjct: 58 FELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNH--TLFTDLERKGLLIAC 115
Query: 182 LCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYR 241
LCHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y
Sbjct: 116 LCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 175
Query: 242 IVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAK 301
V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTAC + ++ K
Sbjct: 176 QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACALCSVTK 235
Query: 302 PWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYK 361
W V A + EF+ +GD K +L QP+ MMDR++KDE+PQ Q+GF + + +P Y
Sbjct: 236 LWPVTKLTANDIYAEFWAEGDEMK-KLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYT 294
Query: 362 VMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWI 398
++ P +PL +N W+ + E TWI
Sbjct: 295 TLTQILPPTEPLLKACRDNLSQWEKVIRGEETA-TWI 330
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 415 bits (1067), Expect = e-136
Identities = 197/432 (45%), Positives = 271/432 (62%), Gaps = 42/432 (9%)
Query: 3 DPRFNNEIDRRTGYTTN---SILCVPI-NSYEGEVIGVAQIINKTDGTSS----FTDRD- 53
D RF + S+LC PI N + +VIGV Q++NK + + F D
Sbjct: 433 DKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRNDE 492
Query: 54 -----------------------------IEVALECLSYHATASGEDTRKL---IKDTIP 81
V LE LSYHA+A+ E+TR+L +P
Sbjct: 493 QFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYHASAAEEETRELQSLAAAVVP 552
Query: 82 SAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP- 140
SAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++VLCRW+LSVKKNYR
Sbjct: 553 SAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKN 612
Query: 141 VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTE 200
V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HDLDHRG NN++ ++E
Sbjct: 613 VAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSE 672
Query: 201 SPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYF 260
PLA LY S MEHHHFDQC+MILNS GN I LS +Y+ +K+++ +IL+TDLA+Y
Sbjct: 673 HPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYI 732
Query: 261 KKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQ 320
K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +Q ++A+LVA EFFDQ
Sbjct: 733 KRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQ 792
Query: 321 GDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYEN 380
GD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++ PL DG +N
Sbjct: 793 GDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKN 852
Query: 381 RKHWQDLAEKVE 392
R+ WQ LAE+ E
Sbjct: 853 RQKWQALAEQQE 864
Score = 75.2 bits (184), Expect = 2e-14
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSS-FTDRDIEVALECL 61
DPRFN E+D+ TGY T SILC+PI ++ EV+GVAQ INK G FT++D + L
Sbjct: 251 DPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYL 310
Query: 62 SYHATA 67
++
Sbjct: 311 AFCGIV 316
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 407 bits (1048), Expect = e-135
Identities = 152/424 (35%), Positives = 235/424 (55%), Gaps = 38/424 (8%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVA----- 57
P F +D TG+ T +ILC PI + EVIGVA+++NK +G F+ D ++A
Sbjct: 271 HPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKING-PWFSKFDEDLATAFSI 329
Query: 58 -------------------------LECLSYHATASGEDTRKLIKDTIP--SAQVYNLYS 90
E + YH S ++ KL+ D I +A N S
Sbjct: 330 YCGISIAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFAS 389
Query: 91 FTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHAL 150
FT+ L + DT A + M + + + + I L R+ L VKK YR YHNW HA
Sbjct: 390 FTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAF 449
Query: 151 NVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT- 209
+V+ + + K ++ ++ D+EI L ++C+CHDLDHRGTNN+FQ ++S LA LY++
Sbjct: 450 SVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSE 509
Query: 210 -STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQ 268
S ME HHF Q + ILN+ G NIF S DY+ ++ L+ + IL+TDLA + + +
Sbjct: 510 GSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQK 569
Query: 269 LVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQL 328
+ E G +D +++ +LL ++MT+CD+ K W+ K+A+L+ EFF QGDLEK +
Sbjct: 570 MAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEK-AM 627
Query: 329 NTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLA 388
+P+ MMDRE K +P++Q+ F++ I +P+YK++ D FP LY+ NR+HW ++
Sbjct: 628 GNRPMEMMDRE-KAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASNREHWTKVS 686
Query: 389 EKVE 392
V
Sbjct: 687 HLVP 690
Score = 63.1 bits (153), Expect = 1e-10
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPI-NSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECL 61
+ ++ G ++LCVP+ + +V+ +A NK +G FTD D V C
Sbjct: 101 EDVQ--QLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGD-LFTDEDEHVIQHCF 157
Query: 62 SYHATA 67
Y +T
Sbjct: 158 HYTSTV 163
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding,
all-alpha-helical, alternative splicing, hydrolase,
membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens}
PDB: 3itm_A* 1z1l_A
Length = 345
Score = 390 bits (1004), Expect = e-133
Identities = 126/332 (37%), Positives = 198/332 (59%), Gaps = 7/332 (2%)
Query: 65 ATASGEDTRKLIKDTIP--SAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHI 122
+A ++ KL+ D I +A N SFT+ L + DT A + M + + + + I
Sbjct: 1 GSAMDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKI 60
Query: 123 PYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACL 182
L R+ L VKK YR YHNW HA +V+ + + K ++ ++ D+EI L ++C+
Sbjct: 61 DCPTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCM 120
Query: 183 CHDLDHRGTNNAFQTKTESPLAILYTT--STMEHHHFDQCVMILNSDGNNIFQALSPHDY 240
CHDLDHRGTNN+FQ ++S LA LY++ S ME HHF Q + ILN+ G NIF S DY
Sbjct: 121 CHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDY 180
Query: 241 RIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIA 300
+ ++ L+ + IL+TDLA + + ++ E G +D +++ +LL ++MT+CD+
Sbjct: 181 QRMLDLMRDIILATDLAHHLRIFKDLQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQT 239
Query: 301 KPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLY 360
K W+ K+A+L+ EFF QGDLEK + +P+ MMDRE K +P++Q+ F++ I +P+Y
Sbjct: 240 KGWKTTRKIAELIYKEFFSQGDLEK-AMGNRPMEMMDRE-KAYIPELQISFMEHIAMPIY 297
Query: 361 KVMSDTFPWIQPLYDGTYENRKHWQDLAEKVE 392
K++ D FP LY+ NR+HW ++ K
Sbjct: 298 KLLQDLFPKAAELYERVASNREHWTKVSHKFT 329
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 389 bits (1001), Expect = e-132
Identities = 124/347 (35%), Positives = 198/347 (57%), Gaps = 7/347 (2%)
Query: 63 YHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHI 122
A + E+ + L+ +P+ ++ F FD+ + I +++
Sbjct: 33 GSAMGTSEEWQGLMHFNLPARICRDIELF---HFDIGPFENMWPGIFVYMIHRSCGTSCF 89
Query: 123 PYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACL 182
+ LCR+++SVKKNYR V YHNW+HA+ VA M+A+L+ +DLE GLL+ACL
Sbjct: 90 ELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQ--NNNGLFTDLERKGLLIACL 147
Query: 183 CHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRI 242
CHDLDHRG +N++ K + PLA LY+TSTME HHF Q V IL +G+NIF LS +Y
Sbjct: 148 CHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQ 207
Query: 243 VMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKP 302
V++++ +I++TDLA+YF + + ++ + G + ++ + + G+MMTACD+ ++ K
Sbjct: 208 VLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKL 267
Query: 303 WEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKV 362
W V A + EF+ +GD K +L QP+ MMDR+++DE+PQ Q+GF + + +P Y
Sbjct: 268 WPVTKLTANDIYAEFWAEGDEMK-KLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTT 326
Query: 363 MSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEE 409
++ P +PL +N W+ + E + WI K E
Sbjct: 327 LTQILPPTEPLLKACRDNLNQWEKVIRGEETAM-WISGPATSKSTSE 372
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 365 bits (938), Expect = e-123
Identities = 88/317 (27%), Positives = 155/317 (48%), Gaps = 15/317 (4%)
Query: 87 NLYSFTFIDFDLSDMDTCRA----TIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-V 141
++ + F ++++ R +F E DL+K F IP D L ++++++ +Y V
Sbjct: 34 DVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADV 93
Query: 142 KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTES 201
YHN HA +V Q+ +L T +E +DLEIL + A HD+DH G +N F T S
Sbjct: 94 AYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNS 153
Query: 202 PLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYF 260
LA++Y +S +E+HH +L + +IFQ L+ + + K+V + +L+TD++ +
Sbjct: 154 ELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHM 213
Query: 261 KKKNRFIQLVEN------GEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVA 314
+VE G + + + M+ D+ KP ++ + +
Sbjct: 214 NLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIM 273
Query: 315 DEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPL 373
+EFF QGD E+ + + M D+ + + QVGFID I PL++ +D P Q +
Sbjct: 274 EEFFRQGDRER-ERGMEISPMCDKH-NASVEKSQVGFIDYIVHPLWETWADLVHPDAQDI 331
Query: 374 YDGTYENRKHWQDLAEK 390
D +NR+ +Q +
Sbjct: 332 LDTLEDNREWYQSTIPQ 348
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 365 bits (938), Expect = e-123
Identities = 79/314 (25%), Positives = 144/314 (45%), Gaps = 12/314 (3%)
Query: 87 NLYSFTFIDFDLSDM----DTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-V 141
+ ++ F F + T +F L++ FH+ L R+++ ++++Y
Sbjct: 21 KVGNWNFDIFLFDRLTNGNSLVSLTFHLFSLHGLIEYFHLDMMKLRRFLVMIQEDYHSQN 80
Query: 142 KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTES 201
YHN HA +V Q M LK K+ ++ +IL L+A HDLDH G N F KT
Sbjct: 81 PYHNAVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNH 140
Query: 202 PLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYF 260
LA LY TS +E+HH+ V +L + +F L + + + IL+TD++
Sbjct: 141 YLATLYKNTSVLENHHWRSAVGLLRE--SGLFSHLPLESRQQMETQIGALILATDISRQN 198
Query: 261 KKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQ 320
+ + F ++ G+ + + L+ M + D+ + WE+ + ++ V +EFF Q
Sbjct: 199 EYLSLFRSHLDRGDLCLEDTRHRHLVLQMALKCADICNPCRTWELSKQWSEKVTEEFFHQ 258
Query: 321 GDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFP--WIQPLYDGTY 378
GD+EK + + + DR + + +Q+GF+ + PL+ + Q +
Sbjct: 259 GDIEK-KYHLGVSPLCDRH-TESIANIQIGFMTYLVEPLFTEWARFSNTRLSQTMLGHVG 316
Query: 379 ENRKHWQDLAEKVE 392
N+ W+ L +
Sbjct: 317 LNKASWKGLQREQS 330
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A;
phophodiestrase, enzyme mechanism, hydrolase, manganes
binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo
sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A*
3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
3n3z_A*
Length = 329
Score = 363 bits (934), Expect = e-123
Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 6/318 (1%)
Query: 77 KDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKK 136
K + + L TF + + M+ + LV+ F I L RW+ V
Sbjct: 8 KYLLSPETIEALRKPTFDVWLWEPNEMLSCLEHMYHDLGLVRDFSINPVTLRRWLFCVHD 67
Query: 137 NYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQ 196
NYR +HN+RH VAQ M++M+ ++ S +IL L+ A +CHDLDH G NN +Q
Sbjct: 68 NYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQ 127
Query: 197 TKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTD 255
+ LA+ Y S +E+HH IL NIF + P ++ + + + IL+TD
Sbjct: 128 INARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATD 187
Query: 256 LAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVAD 315
+A + + + F + +EN FD+ +EE LL +++ CD+ +P EV + +
Sbjct: 188 MARHAEIMDSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLE 245
Query: 316 EFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLY- 374
E+F Q D EK MDR++ Q+GFI + +P+++ ++ FP ++ +
Sbjct: 246 EYFMQSDREK-SEGLPVAPFMDRDKVT-KATAQIGFIKFVLIPMFETVTKLFPMVEEIML 303
Query: 375 DGTYENRKHWQDLAEKVE 392
+E+R +++L +
Sbjct: 304 QPLWESRDRYEELKRIDD 321
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 363 bits (934), Expect = e-122
Identities = 94/370 (25%), Positives = 163/370 (44%), Gaps = 28/370 (7%)
Query: 87 NLYSFTFIDFDLSDMDTCRA----TIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-V 141
+L + F+++ R +F E DL+K F I D ++++++ +Y V
Sbjct: 21 DLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFRISSDTFITYMMTLEDHYHSDV 80
Query: 142 KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTES 201
YHN HA +VAQ+ +L T ++ +DLEIL + A HD+DH G +N F T S
Sbjct: 81 AYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNS 140
Query: 202 PLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYF 260
LA++Y S +E+HH +L + +IF L+ + + K+V + +L+TD++ +
Sbjct: 141 ELALMYNDESVLENHHLAVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHM 200
Query: 261 KKKNRFIQLVEN------GEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVA 314
+VE G + + + M+ D+ K E+ + +
Sbjct: 201 SLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIM 260
Query: 315 DEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPL 373
+EFF QGD E+ + + M D+ + + QVGFID I PL++ +D P Q +
Sbjct: 261 EEFFQQGDKER-ERGMEISPMCDKH-TASVEKSQVGFIDYIVHPLWETWADLVQPDAQDI 318
Query: 374 YDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFAD--AGGTKDIEFTVTTLNCDKI 431
D +NR +Q + + P++E G + +F +T D
Sbjct: 319 LDTLEDNRNWYQSMIPQAP-----------APPLDEQNRDCQGLMEKFQFELTLDEEDSE 367
Query: 432 ATPDSDTSHS 441
HS
Sbjct: 368 GPEKEGEGHS 377
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 362 bits (930), Expect = e-122
Identities = 64/308 (20%), Positives = 129/308 (41%), Gaps = 10/308 (3%)
Query: 87 NLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW---VLSVKKNYRPVKY 143
+L + F F+++ + + L F + +W V +V+ NYRP Y
Sbjct: 40 DLRDWGFDTFEVAS-RVPSVLQSVAMHVALAWDFFASQEEAQKWAFLVAAVENNYRPNPY 98
Query: 144 HNWRHALNVAQTMFAMLKTG-KMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESP 202
HN HA +V Q F+++ + ++ LE A L HD+ H G NAF + P
Sbjct: 99 HNAIHAADVLQGTFSLVSAAKPLMEHLTPLECKAAAFAALTHDVCHPGRTNAFLAAVQDP 158
Query: 203 LAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFK 261
++ + T+E H +LN + ++ + +V + I TD++++ +
Sbjct: 159 VSFKFSGKGTLEQLHTATAFELLNVTEFDFTSSMDNASFLEFKNIVSHLIGHTDMSLHSE 218
Query: 262 KKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQG 321
+ + G FD +E + +++ A D+GA ++ + K ++ EF DQ
Sbjct: 219 TVAKHGAKLSAGGFDCTCKEDRLEALSLLLHAADIGASSRGVAIARKWL-VILQEFADQA 277
Query: 322 DLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENR 381
+ E+ + + + + Q+ F+D +P + ++ FP I+ + R
Sbjct: 278 EDER-RRGLPVTPGFE--TPSSVEKSQIPFLDFFVIPTFDLLHQLFPSIEEPLHNLRKLR 334
Query: 382 KHWQDLAE 389
+ + A
Sbjct: 335 ELYAAKAG 342
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor
selectivity, CAMP phosphodiesterase, hydrolase; HET:
IBM; 1.50A {Leishmania major}
Length = 359
Score = 359 bits (923), Expect = e-121
Identities = 98/332 (29%), Positives = 166/332 (50%), Gaps = 14/332 (4%)
Query: 70 EDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDM------DTCRATIRMFLECDLVKQFHIP 123
+ R+ + I Y+ S F F++ + + L ++F
Sbjct: 21 PEEREAVMS-IDFGGAYDFTSPGFNLFEVREKYSEPMDAAAGVVYNLLWNSGLPEKFGCR 79
Query: 124 YDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLC 183
L ++L ++ YR V YHN+ H ++V QT+ L TGK +++LE LLV L
Sbjct: 80 EQTLLNFILQCRRRYRRVPYHNFYHVVDVCQTLHTYLYTGKASELLTELECYVLLVTALV 139
Query: 184 HDLDHRGTNNAFQTKTESPLAILY----TTSTMEHHHFDQCVMILNSDGNNIFQALSPHD 239
HDLDH G NN+F KT+SPL IL S +E HH + IL+ ++F+ LS D
Sbjct: 140 HDLDHMGVNNSFYLKTDSPLGILSSASGNNSVLEVHHCSLAIEILSDPAADVFEGLSGQD 199
Query: 240 YRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAI 299
+ + + +L+TD+A + +RF +L +G F+ ++ ++L+ ++ A DV +
Sbjct: 200 VAYAYRALIDCVLATDMAKHADALSRFTELATSG-FEKDNDTHRRLVMETLIKAGDVSNV 258
Query: 300 AKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPL 359
KP+E A V +EF+ QGD+EK + + + M DR + +EL + Q+GFID +
Sbjct: 259 TKPFETSRMWAMAVTEEFYRQGDMEK-EKGVEVLPMFDRSKNNELARGQIGFIDFVAGKF 317
Query: 360 YKVM-SDTFPWIQPLYDGTYENRKHWQDLAEK 390
++ + + F +Q D NR WQ++ +
Sbjct: 318 FRDIVGNLFHGMQWCVDTVNSNRAKWQEILDG 349
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Length = 338
Score = 358 bits (920), Expect = e-121
Identities = 77/339 (22%), Positives = 146/339 (43%), Gaps = 29/339 (8%)
Query: 78 DTIPSAQVYNLYSFTFIDFDLSDMDT-------CRATIRMFLECDLVKQFHIPYDVLCRW 130
D +P + + + DFD+ +++ ++MF + + H L W
Sbjct: 1 DDVPPRIARAMENEEYWDFDIFELEAATHNRPLIYLGLKMFARFGICEFLHCSESTLRSW 60
Query: 131 VLSVKKNYRPV-KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHR 189
+ ++ NY YHN H+ +V L +++ + ++ + L+A HD+DH
Sbjct: 61 LQIIEANYHSSNPYHNSTHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHP 120
Query: 190 GTNNAFQTKTESPLAILY-TTSTMEHHHFDQCVMILNSDGN-NIFQALSPHDYRIVMKLV 247
G N+F S LAILY T+ +E HH + D NIF+ + +DYR + + +
Sbjct: 121 GRTNSFLCNAGSELAILYNDTAVLESHHAALAFQLTTGDDKCNIFKNMERNDYRTLRQGI 180
Query: 248 ENSILSTDLAMYFKKKNRFIQLVENGE-----------------FDWQSEEKKQLLCGMM 290
+ +L+T++ +F+ N+F+ + ++ E + L+ M+
Sbjct: 181 IDMVLATEMTKHFEHVNKFVNSINKPLATLEENGETDKNQEVINTMLRTPENRTLIKRML 240
Query: 291 MTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVG 350
+ DV +P + + A +++E+F Q D EK Q + + DR +P+ Q+
Sbjct: 241 IKCADVSNPCRPLQYCIEWAARISEEYFSQTDEEKQQGLPVVMPVFDRN-TCSIPKSQIS 299
Query: 351 FIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAE 389
FID ++ F + L N K+W+ L E
Sbjct: 300 FIDYFITDMFDAWDA-FVDLPDLMQHLDNNFKYWKGLDE 337
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 364 bits (936), Expect = e-120
Identities = 90/318 (28%), Positives = 156/318 (49%), Gaps = 6/318 (1%)
Query: 77 KDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKK 136
K + + L TF + + M+ + LV+ F I L RW+ V
Sbjct: 185 KYLLSPETIEALRKPTFDVWLWEPNEMLSCLEHMYHDLGLVRDFSINPVTLRRWLFCVHD 244
Query: 137 NYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQ 196
NYR +HN+RH VAQ M++M+ ++ S +IL L+ A +CHDLDH G NN +Q
Sbjct: 245 NYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQ 304
Query: 197 TKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTD 255
+ LA+ Y S +E+HH IL NIF + P ++ + + + IL+TD
Sbjct: 305 INARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATD 364
Query: 256 LAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVAD 315
+A + + + F + +EN FD+ +EE LL +++ CD+ +P EV + +
Sbjct: 365 MARHAEIMDSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLE 422
Query: 316 EFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLY- 374
E+F Q D EK MDR++ ++GFI + +P+++ ++ FP ++ +
Sbjct: 423 EYFMQSDREK-SEGLPVAPFMDRDKVT-KATAEIGFIKFVLIPMFETVTKLFPMVEEIML 480
Query: 375 DGTYENRKHWQDLAEKVE 392
+E+R +++L +
Sbjct: 481 QPLWESRDRYEELKRIDD 498
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 354 bits (910), Expect = e-118
Identities = 88/328 (26%), Positives = 160/328 (48%), Gaps = 15/328 (4%)
Query: 78 DTIPSAQVYNLYSFTFIDFDLSDMDTCRA----TIRMFLECDLVKQFHIPYDVLCRWVLS 133
+ + + ++ ++ + F ++++ R +F E DL+K F IP D L ++++
Sbjct: 91 EDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMT 150
Query: 134 VKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTN 192
++ +Y V YHN HA +V Q+ +L T +E +DLEIL + A HD+DH G +
Sbjct: 151 LEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVS 210
Query: 193 NAFQTKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSI 251
N F T S LA++Y +S +E+HH +L + +IFQ L+ + + K+V + +
Sbjct: 211 NQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIV 270
Query: 252 LSTDLAMYFKKKNRFIQLVEN------GEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEV 305
L+TD++ + +VE G + + + M+ D+ KP ++
Sbjct: 271 LATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQL 330
Query: 306 QHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSD 365
+ + +EFF QGD E+ + + M D+ + + QVGFID I PL++ +D
Sbjct: 331 YRQWTDRIMEEFFRQGDRER-ERGMEISPMCDKH-NASVEKSQVGFIDYIVHPLWETWAD 388
Query: 366 TF-PWIQPLYDGTYENRKHWQDLAEKVE 392
P Q + D +NR+ +Q +
Sbjct: 389 LVHPDAQDILDTLEDNREWYQSTIPQAH 416
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 352 bits (904), Expect = e-118
Identities = 90/335 (26%), Positives = 153/335 (45%), Gaps = 19/335 (5%)
Query: 87 NLYSFTFIDFDLSDMDTCRA----TIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVK 142
NL + F F L+ A + +L+ +F IP L ++ +++ Y K
Sbjct: 19 NLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYK 78
Query: 143 --YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTE 200
YHN HA +V QT+ L M +S++E+L ++ A HD +H GT N+F +T+
Sbjct: 79 NPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTK 138
Query: 201 SPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMY 259
S AI+Y S +E+HH ++ D NIF L+ ++ + LV +L+TD++ +
Sbjct: 139 SECAIVYNDRSVLENHHISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCH 198
Query: 260 FKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFD 319
F++ ++ E K +++ A D+ K W V + K + +EFF
Sbjct: 199 FQQVKTMKTALQQLERID-----KPKALSLLLHAADISHPTKQWLVHSRWTKALMEEFFR 253
Query: 320 QGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFP-WIQPLYDGTY 378
QGD E +L + DR + Q Q+GFID I P + V++D +QPL D
Sbjct: 254 QGDKEA-ELGLPFSPLCDRT-STLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDS 311
Query: 379 ENRKHW----QDLAEKVEMGLTWIDHDKIEKPIEE 409
+++ + + VE+G D +
Sbjct: 312 KSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVK 346
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 327 bits (839), Expect = e-107
Identities = 81/376 (21%), Positives = 140/376 (37%), Gaps = 58/376 (15%)
Query: 87 NLYSFTFIDFDLSDMDT-------CRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR 139
+ ++ F F+L + + +F + L++ F IP + +++ YR
Sbjct: 20 KMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYR 79
Query: 140 PVKYHNWRHALNVAQTMFAMLK-------------------------------------- 161
+ YHN HA +V ++ +
Sbjct: 80 DIPYHNRIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSC 139
Query: 162 ------TGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY-TTSTMEH 214
G + + LE++ L VA HD DH G NAF T +P A+LY S +E+
Sbjct: 140 SNPDESYGCLSSNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLEN 199
Query: 215 HHFDQCV-MILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRF---IQLV 270
HH + L+ N L +++ LV +IL+TDL +F F V
Sbjct: 200 HHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNAKANDV 259
Query: 271 ENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNT 330
+ +W +E + L+C + + D+ AK ++ K + + +EF++QGD E L
Sbjct: 260 NSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEA-NLGL 318
Query: 331 QPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEK 390
MDR +L ++Q FI I PL + +N D +
Sbjct: 319 PISPFMDRS-SPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDG 377
Query: 391 VEMGLTWIDHDKIEKP 406
E+ + + P
Sbjct: 378 EELDTEDEEMENNLNP 393
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
GAF domain, structural genomics, NPPSFA; HET: MSE CMP;
2.10A {Homo sapiens} PDB: 2zmf_A*
Length = 189
Score = 80.5 bits (199), Expect = 1e-17
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
DPRFN E+D TGYTT +ILC+PI G VIGV Q++NK G S+F+ D + +
Sbjct: 111 DPRFNREVDLYTGYTTRNILCMPI-VSRGSVIGVVQMVNKISG-SAFSKTDENN-FKMFA 167
Query: 63 YHA 65
Sbjct: 168 VFC 170
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF
domain, cyclic nucleotide phosphodiesterase hydrolase,
lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Length = 180
Score = 77.6 bits (191), Expect = 8e-17
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
+ F++ +D++TGYTT +++ +PI EV+ V +NK + S F+ D EV + L+
Sbjct: 108 NNHFSDYLDKKTGYTTVNMMAIPITQ-GKEVLAVVMALNKLNA-SEFSKEDEEVFKKYLN 165
Query: 63 YHATA 67
+ +
Sbjct: 166 FISLV 170
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5'
guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus
musculus} SCOP: d.110.2.1 d.110.2.1
Length = 368
Score = 76.2 bits (187), Expect = 3e-15
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
P F +D TG+ T +ILC PI + EVIGVA+++NK +G F+ D ++ S
Sbjct: 271 HPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKING-PWFSKFDEDL-ATAFS 328
Query: 63 YHATASGEDTR 73
+ S +
Sbjct: 329 IYCGISIAHSL 339
Score = 66.6 bits (162), Expect = 6e-12
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 8/118 (6%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPI-NSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECL 61
D ++ G ++LCVP+ + +V+ +A NK G FTD D V C
Sbjct: 101 DDVQ--QLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGD-FFTDEDEHVIQHCF 157
Query: 62 SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATI----RMFLECD 115
Y T + + L + L D+ I R +
Sbjct: 158 HYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAE 215
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics,
PSI-2, protein structure initiative; 2.20A {Geobacter
sulfurreducens}
Length = 169
Score = 66.6 bits (163), Expect = 3e-13
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
D R + D + S + PI +GE IGV + N++ S D D++ ++ +
Sbjct: 97 DFRLQSPYDAIRALRSKSFVICPI-VVKGEAIGVFAVDNRSSR-RSLNDTDVDT-IKLFA 153
Query: 63 YHA 65
A
Sbjct: 154 DQA 156
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET:
CMP; 1.90A {Anabaena SP}
Length = 398
Score = 69.1 bits (168), Expect = 8e-13
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 19/81 (23%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDG----------------- 45
D +ID++ GY T S+LC+P+ + + E+IGV Q++NK
Sbjct: 291 DSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKKTGEFPPYNPETWPIAPEC 350
Query: 46 -TSSFTDRDIEVALECLSYHA 65
+SF D E +E + A
Sbjct: 351 FQASFDRNDEEF-MEAFNIQA 370
Score = 57.6 bits (138), Expect = 4e-09
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 DPR--FNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIE 55
DPR F + ++ TGY T ++L +P+ S +G ++ V Q++NK S E
Sbjct: 102 DPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKPYSPPDALLAE 156
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family
protein); redox sensor, heme, hypoxia, GAF domain,
transferase; HET: HEM; 1.40A {Mycobacterium
tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A*
2y79_A* 2y8h_A* 2vzw_A*
Length = 153
Score = 58.0 bits (141), Expect = 2e-10
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
P + L VP+ E G + +KT+G F+D D + ++ L+
Sbjct: 82 HPASIGFPP--YHPPMRTFLGVPVRV-RDESFGTLYLTDKTNGQ-PFSDDDEVL-VQALA 136
Query: 63 YHA 65
A
Sbjct: 137 AAA 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 4e-10
Identities = 66/527 (12%), Positives = 151/527 (28%), Gaps = 156/527 (29%)
Query: 94 IDFDLSDMD-TCRATIRMFLECDLVKQFHIPYDV--LCRWVLSVKKNYRPVKYHNWRHAL 150
+DF+ + + + +F + V F DV + + +LS K+ + + A+
Sbjct: 7 MDFETGEHQYQYKDILSVFED-AFVDNFDC-KDVQDMPKSILS-KEEIDHI--IMSKDAV 61
Query: 151 NVAQTMFAMLKTGK---MERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY 207
+ +F L + + +++F+ ++ ++++ + +T+ P
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEV-----------LRINYKFLMSPIKTEQRQP----- 105
Query: 208 TTSTMEHHHFDQCVMILNSDGNNIF------------------QALSPHDYRIV--MK-- 245
+M + + L +D N +F L P ++ +
Sbjct: 106 ---SMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 246 ----LVENSILSTDL--AMYFK------------------KKNRFIQLVENG-------- 273
+ + LS + M FK + Q+ N
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 274 ----EFDWQSEEKKQLLCGMMMTAC-----DV--GAIAKPWEVQHKM-----AKLVADEF 317
E ++LL C +V + + K+ K V D F
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-F 280
Query: 318 FDQGDLEKLQLNTQPVAMMDRE-----------RKDELP-QMQVGFIDVICL--PLYKVM 363
+ L+ + + E R +LP ++ + + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 364 SDTF-PWIQPLYD-------------GTYENRKHWQDLA---------EKVEMGLTWIDH 400
T+ W D E RK + L+ + + L W D
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDV 399
Query: 401 DKIEKPIEEFADAGGTKDIEFTVTTLNCDKIATPDSDTSHSI--GGSITPSGSTSLHHNR 458
K + + + + +L +K + + SI + +LH +
Sbjct: 400 IKSD--VMVVVN-------KLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 459 TTRFASLRR--NKQLGKSVRSKFTRSF--YHSNNSHPKDKDRELSNL 501
+ + + L ++ S +H N ++ +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Score = 42.1 bits (98), Expect = 4e-04
Identities = 45/292 (15%), Positives = 81/292 (27%), Gaps = 79/292 (27%)
Query: 44 DGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIP------SAQVYNLYSFTFIDFD 97
+ + T + L + +D + + T P + + + + T+ ++
Sbjct: 293 HHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWK 348
Query: 98 LSDMDTCRATIRMFLEC----DLVKQF----------HIPYDVLCR-WVLSVKKNYRPVK 142
+ D I L + K F HIP +L W +K + V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV- 407
Query: 143 YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD----------LDHRGTN 192
+N + K K I + + +DH
Sbjct: 408 -------VNKLHKYSLVEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 193 NAFQTKTESPLAI---LYTTSTMEH--HHFDQCVMILNSDG-NNIFQALSPHDYR-IVMK 245
F + P + Y H HH +F D+R + K
Sbjct: 457 KTFDSDDLIPPYLDQYFY-----SHIGHHLKNIEHPERMTLFRMVFL-----DFRFLEQK 506
Query: 246 L--------VENSILST--DLAMY----FKKKNRFIQLVEN-GEFDWQSEEK 282
+ SIL+T L Y ++ +LV +F + EE
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Score = 37.9 bits (87), Expect = 0.008
Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 21/147 (14%)
Query: 214 HHHFDQCVMILNSDGNNIFQALSPH-----DYRIVMKLVENSILSTDLAMYFKKKNR--- 265
HHH D +I D + V + ++ + ++ K+
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 266 ----FIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQG 321
F L+ E E ++ + ++ + + P + + + ++ + +Q
Sbjct: 64 TLRLFWTLLSKQE-----EMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQ- 115
Query: 322 DLEKLQLNTQPVAMMDRERKDELPQMQ 348
++L + Q A + R +++
Sbjct: 116 -RDRLYNDNQVFAKYNVSRLQPYLKLR 141
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase;
PEP-phosphotransferase, GAF domain, structura genomics,
PSI-2, protein structure initiative; HET: MSE P4G; 1.55A
{Acinetobacter SP}
Length = 171
Score = 57.7 bits (140), Expect = 4e-10
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
RF + NS L VP+ Y +V+GV + NK F++ L L
Sbjct: 100 HERFAY-LPETGEEIYNSFLGVPVM-YRRKVMGVLVVQNKQPQD--FSEAAES-FLVTLC 154
Query: 63 YHA 65
Sbjct: 155 AQL 157
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal
transduction; HET: MSE; 1.65A {Coxiella burnetii}
Length = 171
Score = 53.5 bits (129), Expect = 1e-08
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
P + + + L +PI +GE++G+ I F + + L+
Sbjct: 98 HPAYKH-RPELGEEDYHGFLGIPI-IEQGELLGILVIQQLESH--HFAEEEEA-FCVTLA 152
Query: 63 YHA 65
H
Sbjct: 153 IHL 155
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA,
structural genomics, PSI-2, midwest center for
structural G MCSG; 3.10A {Geobacter sulfurreducens}
Length = 181
Score = 49.2 bits (118), Expect = 5e-07
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
DPR+ NS+L PI + EV GV + + + F + +I + ++
Sbjct: 103 DPRYRY-FPELQEEKYNSMLSFPI-GDKKEVYGVINLNTTSIRS--FHEDEIYF-VSIIA 157
Query: 63 YHA 65
Sbjct: 158 NLI 160
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG,
structural genomics, midwest center for structural
genomics, protein S initiative; 2.45A {Bacillus
halodurans}
Length = 165
Score = 41.5 bits (98), Expect = 1e-04
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLS 62
F E SIL +PI + + +GV I K ++ D+ LE L+
Sbjct: 80 QDNFY-EKQYLAILDLKSILVIPI-YSKNKRVGVLSIGRKQQI--DWSLDDLAF-LEQLT 134
Query: 63 YHA 65
H
Sbjct: 135 DHL 137
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane
protein, PSI-2, MCSG structural genomics; 2.40A
{Geobacter sulfurreducens pca}
Length = 181
Score = 35.4 bits (82), Expect = 0.018
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 3 DPRFNN-EIDRRTGYTTNSILCVPINSYEGEV-IGVAQIINKTDGTSSFTDRDIEVALEC 60
+ E+ ++ G S +PI S +GE G+ + ++T F + + + LE
Sbjct: 93 MTKPLTRELMQKEGIK--SFAHIPI-SRKGEPPFGILSVFSRTIVG-LFNEPFLNL-LES 147
Query: 61 LSYHA 65
L+
Sbjct: 148 LAGQL 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.13
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 36/125 (28%)
Query: 395 LTWIDHDKIEK----PIEEFADAGGTKDIEFTVTTLNCDKIATPDSDTSHSIGGSITPSG 450
LT + H +E P F A ++ +F + P + P+
Sbjct: 9 LT-LSHGSLEHVLLVPTASFFIASQLQE-QFNKI------LPEP----TEGFAADDEPTT 56
Query: 451 STSLHHNRTTRF----ASLRRNKQLG------KSVRSKFTRSFYHSNNSH------PKDK 494
L +F +SL ++G ++F + N+ H ++
Sbjct: 57 PAEL----VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 495 DRELS 499
D L
Sbjct: 113 DTTLV 117
Score = 33.9 bits (77), Expect = 0.18
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 24/111 (21%)
Query: 244 MKLVENSILSTDL---A-MYFKKKNRF--IQLVENG------EFDWQSEEK-KQLLCGMM 290
M L + S + D+ A +FK F + +V N F + ++ ++ M+
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 291 M-TACDVGAIAKPW--EVQHKMAKLVADEFFDQGDLEKLQL--NTQPVAMM 336
T D + E+ F + + L TQP A+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYT----F-RSEKGLLSATQFTQP-ALT 1737
Score = 31.2 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 13/47 (27%)
Query: 63 YHATASGEDTRKL-------IKDTIPSAQVY----NLYSFT-FIDFD 97
Y T G D R L I D I V + T +DF
Sbjct: 460 YD-TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide
triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Length = 528
Score = 33.2 bits (75), Expect = 0.20
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 4/134 (2%)
Query: 148 HALNV---AQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLA 204
H+L V A + L + E +S+ ++L + +A LCHDL H ++ F PLA
Sbjct: 69 HSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFD-GRFIPLA 127
Query: 205 ILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKN 264
T E ++NS+G + ++ I+ +
Sbjct: 128 RPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLESPVEDSLW 187
Query: 265 RFIQLVENGEFDWQ 278
+ EN F ++
Sbjct: 188 PYKGRPENKSFLYE 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.65
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 404 EKPIEEFADAGGTKDIEFTVTTLNCDKIATPDSDTSHSIGGSI 446
EK + K ++ +L K+ DS + +I ++
Sbjct: 18 EK--QAL------KKLQ---ASL---KLYADDSAPALAIKATM 46
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces
cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Length = 180
Score = 29.9 bits (67), Expect = 1.3
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 17 TTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIE 55
T S + VPI S +G+ +GV I F D E
Sbjct: 128 ETKSEIVVPIISNDGKTLGVIDI--DCLDYEGFDHVDKE 164
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Length = 190
Score = 29.8 bits (67), Expect = 1.6
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 141 VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLD 187
+ ++H+L V T + + D E + A L HD
Sbjct: 16 LGEKRYKHSLGVMDTAVRL-----AGIYNEDTEKARI--AGLVHDCA 55
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural
genomics, JOIN for structural genomics, JCSG; HET: UNL
PG4 DGI; 1.90A {Bacillus halodurans}
Length = 188
Score = 29.8 bits (67), Expect = 1.6
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 141 VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLD 187
+ H ++H + V +T + + + +D + L A + HD
Sbjct: 15 LTEHRYQHTIGVMETAIDL-----AKLYGADQQKAEL--AAIFHDYA 54
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for
structural genomics, J protein structure initiative;
HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup
V}
Length = 196
Score = 29.5 bits (66), Expect = 1.9
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 141 VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLD 187
+ + H L V + + ER+ D E GL A L HD
Sbjct: 23 MSDKRFNHVLGVERAAIEL-----AERYGYDKEKAGL--AALLHDYA 62
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 29.9 bits (67), Expect = 2.5
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 480 TRSFYHSNNSHPKDKDRELSNLSTSRSDDIHNKNEENFGRMFPTMSYFTVWGTY 533
Y N P +L+ T + + N E++ F + YFT W Y
Sbjct: 61 AEETYQELNYEPSISADKLTWTPTRLAKTVFNTYEDDDD--FNVLCYFTDWSQY 112
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU
initiative, midwest center for structural genomics,
MCSG, U function; 2.15A {Bacillus cereus} SCOP:
a.149.1.1
Length = 138
Score = 27.6 bits (61), Expect = 5.1
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 124 YDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLC 183
Y+ R+ L K RP + H + A+ ++ F+++ E
Sbjct: 23 YEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEE---------- 72
Query: 184 HDLDHRGTNNAFQTKTESPLAILYTTST 211
+ RG N T ++ Y ST
Sbjct: 73 EAVLRRGRNANSGTVPKNTDVQTYRHST 100
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 28.4 bits (64), Expect = 6.8
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 76 IKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFH 121
+ + F FI+ D+ D+ TC ++ D V H
Sbjct: 66 LDEVKTLVSTEQWSRFCFIEGDIRDLTTCE---QVMKGVDHV--LH 106
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center
for structural genomics, JCSG; HET: MSE ADP; 2.20A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 410
Score = 28.1 bits (62), Expect = 9.3
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 148 HALNV---AQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188
H+L L F+ D E + A L HD+ H
Sbjct: 59 HSLGAFYLMSEAITQLT--SKGNFIFDSEAEAVQAAILLHDIGH 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,269,399
Number of extensions: 491976
Number of successful extensions: 1095
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 59
Length of query: 536
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 438
Effective length of database: 3,965,535
Effective search space: 1736904330
Effective search space used: 1736904330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)