RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8796
(536 letters)
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 343 bits (882), Expect = e-116
Identities = 163/322 (50%), Positives = 226/322 (70%), Gaps = 2/322 (0%)
Query: 70 EDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCR 129
+ + L +PSAQ + F+F DF+LSD++T TIRMF + +LV+ F + ++VLCR
Sbjct: 5 RELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCR 64
Query: 130 WVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188
W+LSVKKNYR V YHNWRHA N AQ MFA LK GK++ ++DLEIL LL+A L HDLDH
Sbjct: 65 WILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDH 124
Query: 189 RGTNNAFQTKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLV 247
G +N F T S LA++Y S +EHHHFDQC+MILNS GN I LS +Y+ +K++
Sbjct: 125 PGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKII 184
Query: 248 ENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQH 307
+ +IL+TDLA+Y K++ F +L+ +F+ + +K+L M+MTACD+ AI KPW +Q
Sbjct: 185 KQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQ 244
Query: 308 KMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF 367
++A+LVA EFFDQGD E+ +LN +P +M+RE+K+++P MQVGFID ICL LY+ ++
Sbjct: 245 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVS 304
Query: 368 PWIQPLYDGTYENRKHWQDLAE 389
PL DG +NR+ WQ LAE
Sbjct: 305 EDCFPLLDGCRKNRQKWQALAE 326
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 306 bits (786), Expect = e-101
Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 6/318 (1%)
Query: 77 KDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKK 136
K + + L TF + + M+ + LV+ F I L RW+ V
Sbjct: 4 KYLLSPETIEALRKPTFDVWLWEPNEMLSCLEHMYHDLGLVRDFSINPVTLRRWLFCVHD 63
Query: 137 NYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQ 196
NYR +HN+RH VAQ M++M+ ++ S +IL L+ A +CHDLDH G NN +Q
Sbjct: 64 NYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQ 123
Query: 197 TKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTD 255
+ LA+ Y S +E+HH IL NIF + P ++ + + + IL+TD
Sbjct: 124 INARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATD 183
Query: 256 LAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVAD 315
+A + + + F + +EN FD+ +EE LL +++ CD+ +P EV + +
Sbjct: 184 MARHAEIMDSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLE 241
Query: 316 EFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLY- 374
E+F Q D EK MDR++ Q+GFI + +P+++ ++ FP ++ +
Sbjct: 242 EYFMQSDREK-SEGLPVAPFMDRDKVT-KATAQIGFIKFVLIPMFETVTKLFPMVEEIML 299
Query: 375 DGTYENRKHWQDLAEKVE 392
+E+R +++L +
Sbjct: 300 QPLWESRDRYEELKRIDD 317
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 284 bits (727), Expect = 3e-92
Identities = 90/335 (26%), Positives = 151/335 (45%), Gaps = 19/335 (5%)
Query: 87 NLYSFTFIDFDLSDMDTCRA----TIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVK 142
NL + F F L+ A + +L+ +F IP L ++ +++ Y K
Sbjct: 15 NLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYK 74
Query: 143 --YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTE 200
YHN HA +V QT+ L M +S++E+L ++ A HD +H GT N+F +T+
Sbjct: 75 NPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTK 134
Query: 201 SPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMY 259
S AI+Y S +E+HH ++ D NIF L+ ++ + LV +L+TD++ +
Sbjct: 135 SECAIVYNDRSVLENHHISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCH 194
Query: 260 FKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFD 319
F++ K +++ A D+ K W V + K + +EFF
Sbjct: 195 FQQVKTM-----KTALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWTKALMEEFFR 249
Query: 320 QGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFP-WIQPLYDGTY 378
QGD E +L + DR + Q Q+GFID I P + V++D +QPL D
Sbjct: 250 QGDKEA-ELGLPFSPLCDRT-STLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDS 307
Query: 379 ENR----KHWQDLAEKVEMGLTWIDHDKIEKPIEE 409
+++ W+ + VE+G D +
Sbjct: 308 KSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVK 342
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
9606]}
Length = 415
Score = 285 bits (731), Expect = 5e-92
Identities = 81/379 (21%), Positives = 140/379 (36%), Gaps = 58/379 (15%)
Query: 87 NLYSFTFIDFDLSDMDT-------CRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR 139
+ ++ F F+L + + +F + L++ F IP + +++ YR
Sbjct: 15 KMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYR 74
Query: 140 PVKYHNWRHALNVAQTMFAMLK-------------------------------------- 161
+ YHN HA +V ++ +
Sbjct: 75 DIPYHNRIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSC 134
Query: 162 ------TGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILY-TTSTMEH 214
G + + LE++ L VA HD DH G NAF T +P A+LY S +E+
Sbjct: 135 SNPDESYGCLSSNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLEN 194
Query: 215 HHFDQCV-MILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRF---IQLV 270
HH + L+ N L +++ LV +IL+TDL +F F V
Sbjct: 195 HHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNAKANDV 254
Query: 271 ENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNT 330
+ +W +E + L+C + + D+ AK ++ K + + +EF++QGD E L
Sbjct: 255 NSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEA-NLGL 313
Query: 331 QPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEK 390
MDR +L ++Q FI I PL + +N D +
Sbjct: 314 PISPFMDRS-SPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDG 372
Query: 391 VEMGLTWIDHDKIEKPIEE 409
E+ + + P
Sbjct: 373 EELDTEDEEMENNLNPKPP 391
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
9606]}
Length = 326
Score = 281 bits (720), Expect = 1e-91
Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 15/314 (4%)
Query: 87 NLYSFTFIDFDLSDMDTCRA----TIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-V 141
++ + F ++++ R +F E DL+K F IP D L ++++++ +Y V
Sbjct: 13 DVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADV 72
Query: 142 KYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTES 201
YHN HA +V Q+ +L T +E +DLEIL + A HD+DH G +N F T S
Sbjct: 73 AYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNS 132
Query: 202 PLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYF 260
LA++Y +S +E+HH +L + +IFQ L+ + + K+V + +L+TD++ +
Sbjct: 133 ELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHM 192
Query: 261 KKKNRFIQLVEN------GEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVA 314
+VE G + + + M+ D+ KP ++ + +
Sbjct: 193 NLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIM 252
Query: 315 DEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPL 373
+EFF QGD E+ + + M D+ + + QVGFID I PL++ +D P Q +
Sbjct: 253 EEFFRQGDRER-ERGMEISPMCDKH-NASVEKSQVGFIDYIVHPLWETWADLVHPDAQDI 310
Query: 374 YDGTYENRKHWQDL 387
D +NR+ +Q
Sbjct: 311 LDTLEDNREWYQST 324
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 39.3 bits (91), Expect = 3e-04
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 3 DPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIE 55
P T S + VPI S +G+ +GV I F D E
Sbjct: 116 YPGHIACD-----GETKSEIVVPIISNDGKTLGVIDIDCLDYE--GFDHVDKE 161
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 30.1 bits (67), Expect = 0.74
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 21/109 (19%)
Query: 148 HALNV---AQTMFAMLKTG-----KMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKT 199
H+L V + + + + E +D E L L A L HD+ H ++ F+
Sbjct: 66 HSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFE--- 122
Query: 200 ESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVE 248
+ +H V I+ S ++Q L+ K+
Sbjct: 123 ----------HIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVAS 161
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
1484]}
Length = 77
Score = 26.6 bits (58), Expect = 2.0
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 287 CGMMMTACDVGAIAKPWEVQHKMAKLVAD--EFFDQ 320
CG C V AI V + + +FF +
Sbjct: 42 CGACEAVCPVSAIYHEDFVPEEWKSYIQKNRDFFKK 77
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835
{Bacillus halodurans [TaxId: 86665]}
Length = 212
Score = 28.1 bits (62), Expect = 2.0
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 129 RWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188
WV + H+W H V A+ + K++ F+ + +A L HDL
Sbjct: 11 AWVKKQLMDEYS--GHDWYHIRRVTLMAKAIGEQEKVDVFV-------VQIAALFHDLID 61
Query: 189 RGTNNAFQTKTESPLAIL 206
+ +T + + +
Sbjct: 62 DKLVDDPETAKQQLIDWM 79
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 169
Score = 27.5 bits (60), Expect = 2.7
Identities = 17/123 (13%), Positives = 28/123 (22%), Gaps = 6/123 (4%)
Query: 66 TASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYD 125
+ R+LI D + ++ E +
Sbjct: 21 EVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINPEFEPL 80
Query: 126 VLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
P Y N V G +++ GLL C+ H+
Sbjct: 81 TEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDR--DGNPFEEVAE----GLLAVCIQHE 134
Query: 186 LDH 188
DH
Sbjct: 135 CDH 137
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 27.9 bits (62), Expect = 3.2
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 80 IPSAQVYNLYSFTFIDFDLSD---MDTCRATIRMFLECDLVKQFHIPYDVLCRW 130
I + +Y ++D + +DT + L LV D + +
Sbjct: 99 ISFSDQKKIYRSIYVDLGDPNYMAIDTSFSIAFCILYGQLVDLKDTNPDKMPSY 152
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 172
Score = 27.3 bits (60), Expect = 3.3
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 107 TIRMFLECDLVKQFHIPYDVLCR-WVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKM 165
+I + L +K + W++ N V H++R A +L ++
Sbjct: 1 SIDLILLAGKLK------RIPRMGWLIKGVPNPESVADHSYRVA------FITLLLAEEL 48
Query: 166 ERFMSDLEILGLLVACLCHDL 186
++ ++++ L + HDL
Sbjct: 49 KKKGVEIDVEKALKIAIIHDL 69
>d1lmea_ d.167.1.1 (A:) Peptide deformylase {Thermotoga maritima
[TaxId: 2336]}
Length = 154
Score = 27.0 bits (59), Expect = 4.2
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 9/123 (7%)
Query: 66 TASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYD 125
T E+ +K I+ I + Y+ +S ++ I +
Sbjct: 29 TKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQR-------FFVMDVGNGPVAVINPE 81
Query: 126 VLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHD 185
+L + + + + ++ + + + E +LE G H+
Sbjct: 82 ILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELE--GYAARVFQHE 139
Query: 186 LDH 188
DH
Sbjct: 140 FDH 142
>d1cfra_ c.52.1.7 (A:) Restriction endonuclease Cfr10I {Citrobacter
freundii [TaxId: 546]}
Length = 283
Score = 26.8 bits (59), Expect = 5.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 132 LSVKKNYRPVKYHNWRHALNVAQTMFAMLKT 162
LSVK +RP + H ++ + ++ L+T
Sbjct: 187 LSVKTTFRPDRRLQLAHEGSLMKALYTHLQT 217
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 27.0 bits (60), Expect = 5.9
Identities = 3/50 (6%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 120 FHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 169
+ ++ + + + A +A + + M
Sbjct: 110 LPMTNKEKAAYIADFSDEFLVLSEVGSKDA-ELASRQSSEEWLEYIVEDM 158
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 290
Score = 26.5 bits (58), Expect = 7.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 132 LSVKKNYRPVKYHNWRHALNVAQTMFAMLKT 162
+ +K + RP + H N+ +++FA LK
Sbjct: 192 VGLKTSLRPDRRLQLVHEGNILKSLFAHLKM 222
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 26.3 bits (57), Expect = 8.3
Identities = 13/120 (10%), Positives = 34/120 (28%), Gaps = 7/120 (5%)
Query: 69 GEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLC 128
+ ++++ D + D+ E ++ +
Sbjct: 24 NAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGE 83
Query: 129 RWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188
+ + R + A+ + + F + + GLL C+ H++DH
Sbjct: 84 TGIEE-----GCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAD--GLLAICIQHEMDH 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,036,003
Number of extensions: 95510
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 31
Length of query: 536
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 446
Effective length of database: 1,171,896
Effective search space: 522665616
Effective search space used: 522665616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)