Query psy8797
Match_columns 122
No_of_seqs 149 out of 328
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:31:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_A Protein (transcription 100.0 7.3E-32 2.5E-36 183.1 7.1 69 54-122 4-73 (76)
2 1cf7_B Protein (transcription 99.5 7.3E-15 2.5E-19 103.6 4.2 65 55-122 5-88 (95)
3 2xvc_A ESCRT-III, SSO0910; cel 96.1 0.01 3.5E-07 38.4 4.8 44 67-111 13-56 (59)
4 1qgp_A Protein (double strande 95.9 0.014 4.7E-07 38.1 5.1 54 67-120 17-71 (77)
5 1qbj_A Protein (double-strande 95.7 0.022 7.4E-07 37.9 5.4 55 66-120 12-67 (81)
6 1oyi_A Double-stranded RNA-bin 95.6 0.028 9.7E-07 38.0 5.6 59 60-121 13-71 (82)
7 2heo_A Z-DNA binding protein 1 95.5 0.027 9.4E-07 35.5 5.2 53 65-118 11-63 (67)
8 2htj_A P fimbrial regulatory p 94.5 0.092 3.1E-06 33.4 5.5 44 68-113 4-47 (81)
9 2y75_A HTH-type transcriptiona 94.1 0.13 4.3E-06 35.3 6.0 48 66-113 11-59 (129)
10 3r0a_A Putative transcriptiona 93.5 0.12 4.3E-06 35.5 5.1 47 67-113 29-75 (123)
11 3eco_A MEPR; mutlidrug efflux 93.4 0.13 4.5E-06 34.4 4.9 46 68-113 35-80 (139)
12 3bro_A Transcriptional regulat 93.3 0.15 5.3E-06 33.9 5.1 45 69-113 39-83 (141)
13 1y0u_A Arsenical resistance op 93.0 0.15 5.3E-06 33.1 4.6 45 69-118 36-80 (96)
14 1sfx_A Conserved hypothetical 93.0 0.14 4.7E-06 32.6 4.3 45 68-114 24-68 (109)
15 3cuo_A Uncharacterized HTH-typ 92.9 0.21 7.2E-06 31.7 5.1 45 69-115 29-73 (99)
16 2kko_A Possible transcriptiona 92.8 0.16 5.3E-06 34.1 4.6 38 79-116 37-74 (108)
17 2fu4_A Ferric uptake regulatio 92.6 0.14 4.9E-06 32.3 4.0 47 68-114 21-72 (83)
18 2d1h_A ST1889, 109AA long hypo 92.1 0.14 4.8E-06 32.6 3.5 37 78-114 34-70 (109)
19 2oqg_A Possible transcriptiona 91.3 0.39 1.3E-05 31.4 5.1 44 68-114 25-68 (114)
20 1ku9_A Hypothetical protein MJ 90.9 0.38 1.3E-05 31.9 4.8 45 68-113 30-74 (152)
21 3jth_A Transcription activator 90.8 0.5 1.7E-05 30.4 5.2 37 79-115 35-71 (98)
22 2frh_A SARA, staphylococcal ac 90.8 0.32 1.1E-05 32.9 4.4 45 69-113 42-86 (127)
23 1r1u_A CZRA, repressor protein 90.6 0.35 1.2E-05 31.9 4.4 44 69-115 31-74 (106)
24 3pqk_A Biofilm growth-associat 90.5 0.61 2.1E-05 30.3 5.4 44 69-115 28-71 (102)
25 3rkx_A Biotin-[acetyl-COA-carb 90.2 0.41 1.4E-05 38.5 5.2 54 66-119 5-59 (323)
26 3jw4_A Transcriptional regulat 90.2 0.22 7.5E-06 33.8 3.1 45 69-113 46-90 (148)
27 1j5y_A Transcriptional regulat 90.2 0.56 1.9E-05 34.2 5.6 46 67-113 24-70 (187)
28 2jt1_A PEFI protein; solution 90.0 0.45 1.5E-05 31.2 4.4 47 67-113 7-57 (77)
29 3deu_A Transcriptional regulat 90.0 0.71 2.4E-05 32.4 5.7 36 79-114 67-102 (166)
30 3mq0_A Transcriptional repress 89.9 0.49 1.7E-05 36.7 5.2 51 67-118 33-83 (275)
31 2hzt_A Putative HTH-type trans 89.7 0.58 2E-05 31.1 4.9 37 78-114 25-62 (107)
32 4b8x_A SCO5413, possible MARR- 89.7 0.38 1.3E-05 33.4 4.1 44 70-113 41-84 (147)
33 2pg4_A Uncharacterized protein 89.6 0.48 1.7E-05 30.5 4.3 52 60-112 9-63 (95)
34 1ylf_A RRF2 family protein; st 89.6 0.66 2.3E-05 32.8 5.3 47 67-113 17-63 (149)
35 1sfu_A 34L protein; protein/Z- 89.4 0.53 1.8E-05 31.4 4.4 58 61-120 12-69 (75)
36 3mkl_A HTH-type transcriptiona 89.3 0.59 2E-05 31.3 4.7 43 65-108 8-50 (120)
37 1ub9_A Hypothetical protein PH 89.3 0.47 1.6E-05 30.0 4.0 43 69-113 21-63 (100)
38 3nqo_A MARR-family transcripti 89.2 0.52 1.8E-05 33.9 4.6 45 69-113 46-90 (189)
39 3oio_A Transcriptional regulat 89.1 0.7 2.4E-05 30.6 4.9 44 65-108 8-51 (113)
40 3oou_A LIN2118 protein; protei 89.1 0.49 1.7E-05 31.1 4.1 44 65-108 6-49 (108)
41 2cfx_A HTH-type transcriptiona 89.0 0.68 2.3E-05 32.1 5.0 47 65-113 6-52 (144)
42 2lkp_A Transcriptional regulat 89.0 0.71 2.4E-05 30.7 4.9 36 79-114 44-79 (119)
43 3g3z_A NMB1585, transcriptiona 88.8 0.54 1.9E-05 31.6 4.3 33 81-113 46-78 (145)
44 3u2r_A Regulatory protein MARR 88.8 0.43 1.5E-05 33.2 3.8 45 69-113 51-95 (168)
45 2gxg_A 146AA long hypothetical 88.8 0.66 2.3E-05 30.9 4.6 36 78-113 48-83 (146)
46 1u2w_A CADC repressor, cadmium 88.7 0.72 2.5E-05 31.4 4.9 46 68-115 46-91 (122)
47 3tgn_A ADC operon repressor AD 88.6 0.65 2.2E-05 31.1 4.5 44 68-114 42-85 (146)
48 1on2_A Transcriptional regulat 88.6 0.99 3.4E-05 30.6 5.5 36 79-114 21-56 (142)
49 2x4h_A Hypothetical protein SS 88.5 0.75 2.6E-05 31.0 4.8 38 77-114 28-65 (139)
50 2dbb_A Putative HTH-type trans 88.3 0.77 2.6E-05 31.8 4.9 50 62-113 7-56 (151)
51 1p6r_A Penicillinase repressor 88.3 0.7 2.4E-05 29.0 4.3 46 67-114 12-61 (82)
52 2nnn_A Probable transcriptiona 88.3 0.59 2E-05 30.8 4.1 34 80-113 52-85 (140)
53 3nrv_A Putative transcriptiona 88.2 0.75 2.6E-05 30.9 4.6 44 68-113 44-87 (148)
54 2fbi_A Probable transcriptiona 88.0 0.62 2.1E-05 30.8 4.1 34 80-113 50-83 (142)
55 3mn2_A Probable ARAC family tr 88.0 0.68 2.3E-05 30.3 4.2 44 65-108 3-46 (108)
56 3k69_A Putative transcription 88.0 1.1 3.9E-05 32.4 5.8 48 66-113 14-61 (162)
57 2ip2_A Probable phenazine-spec 87.9 0.54 1.8E-05 36.1 4.2 41 79-119 40-80 (334)
58 1xn7_A Hypothetical protein YH 87.9 0.96 3.3E-05 29.6 4.9 45 67-113 5-49 (78)
59 3i53_A O-methyltransferase; CO 87.9 0.43 1.5E-05 36.8 3.6 48 69-119 30-77 (332)
60 2xrn_A HTH-type transcriptiona 87.8 0.88 3E-05 34.4 5.3 50 68-118 10-60 (241)
61 3bja_A Transcriptional regulat 87.7 0.83 2.9E-05 30.1 4.6 43 69-113 38-80 (139)
62 2cg4_A Regulatory protein ASNC 87.7 0.87 3E-05 31.6 4.9 48 64-113 8-55 (152)
63 3fm5_A Transcriptional regulat 87.7 0.67 2.3E-05 31.4 4.1 42 71-113 46-87 (150)
64 2p5v_A Transcriptional regulat 87.6 0.95 3.2E-05 31.9 5.1 50 62-113 8-57 (162)
65 2hr3_A Probable transcriptiona 87.6 0.78 2.7E-05 30.7 4.4 45 68-113 39-83 (147)
66 1tbx_A ORF F-93, hypothetical 87.6 1.1 3.6E-05 28.8 4.9 36 78-113 20-59 (99)
67 3f3x_A Transcriptional regulat 87.6 0.75 2.6E-05 30.9 4.3 42 69-113 42-83 (144)
68 3bpv_A Transcriptional regulat 87.5 0.99 3.4E-05 29.7 4.9 43 69-113 34-76 (138)
69 3oop_A LIN2960 protein; protei 87.5 0.66 2.3E-05 31.1 4.0 35 79-113 50-84 (143)
70 2qww_A Transcriptional regulat 87.4 0.92 3.2E-05 30.6 4.7 42 69-112 46-87 (154)
71 2o0y_A Transcriptional regulat 87.4 0.93 3.2E-05 34.6 5.3 49 69-118 28-76 (260)
72 1mkm_A ICLR transcriptional re 87.4 1.1 3.9E-05 33.8 5.7 50 68-118 12-61 (249)
73 3pfi_A Holliday junction ATP-d 87.2 0.74 2.5E-05 35.2 4.6 55 62-116 261-316 (338)
74 1i1g_A Transcriptional regulat 87.2 0.66 2.3E-05 31.5 3.9 45 67-113 7-51 (141)
75 2fsw_A PG_0823 protein; alpha- 87.1 1 3.5E-05 29.7 4.7 37 78-114 36-73 (107)
76 2fa5_A Transcriptional regulat 87.0 0.93 3.2E-05 30.9 4.6 37 78-114 61-97 (162)
77 1z7u_A Hypothetical protein EF 87.0 0.94 3.2E-05 30.3 4.5 36 79-114 34-70 (112)
78 2a61_A Transcriptional regulat 86.9 0.8 2.7E-05 30.5 4.1 35 79-113 46-80 (145)
79 3f6o_A Probable transcriptiona 86.8 1 3.5E-05 30.3 4.6 44 68-114 22-65 (118)
80 2w25_A Probable transcriptiona 86.7 1.1 3.9E-05 31.0 5.0 48 64-113 7-54 (150)
81 2bv6_A MGRA, HTH-type transcri 86.7 0.87 3E-05 30.3 4.2 36 79-114 50-85 (142)
82 2eth_A Transcriptional regulat 86.6 0.83 2.8E-05 31.2 4.1 43 69-113 49-91 (154)
83 2k02_A Ferrous iron transport 86.5 1.1 3.8E-05 30.1 4.6 46 67-114 5-50 (87)
84 3ech_A MEXR, multidrug resista 86.4 0.95 3.3E-05 30.3 4.3 43 69-113 42-84 (142)
85 1r1t_A Transcriptional repress 86.4 1.2 3.9E-05 30.6 4.8 36 79-114 58-93 (122)
86 3gwz_A MMCR; methyltransferase 86.3 0.55 1.9E-05 37.2 3.5 41 77-117 68-108 (369)
87 2dk5_A DNA-directed RNA polyme 86.3 1.1 3.9E-05 29.9 4.6 47 67-113 23-69 (91)
88 3bdd_A Regulatory protein MARR 86.2 0.96 3.3E-05 29.9 4.2 36 79-114 44-79 (142)
89 2fbh_A Transcriptional regulat 86.2 1 3.6E-05 29.8 4.4 37 77-113 49-85 (146)
90 3cdh_A Transcriptional regulat 86.2 1.5 5.1E-05 29.7 5.3 36 78-113 55-90 (155)
91 3lsg_A Two-component response 86.2 1 3.5E-05 29.2 4.3 43 65-107 3-46 (103)
92 2wte_A CSA3; antiviral protein 86.2 1 3.5E-05 34.9 4.9 49 65-115 153-201 (244)
93 1bl0_A Protein (multiple antib 86.2 0.9 3.1E-05 30.9 4.1 44 64-107 11-54 (129)
94 2vn2_A DNAD, chromosome replic 86.2 1 3.5E-05 31.2 4.5 36 78-113 49-84 (128)
95 1lj9_A Transcriptional regulat 86.1 1.2 4E-05 29.7 4.7 42 70-113 35-76 (144)
96 2jsc_A Transcriptional regulat 86.1 0.75 2.6E-05 31.1 3.7 43 68-113 25-67 (118)
97 3bj6_A Transcriptional regulat 86.0 1.2 4.1E-05 29.9 4.7 35 79-113 53-87 (152)
98 3lst_A CALO1 methyltransferase 85.7 0.63 2.2E-05 36.4 3.6 41 77-118 52-92 (348)
99 2r3s_A Uncharacterized protein 85.6 0.59 2E-05 35.6 3.3 40 78-118 37-76 (335)
100 2cyy_A Putative HTH-type trans 85.6 1.1 3.7E-05 31.2 4.4 48 64-113 7-54 (151)
101 3cjn_A Transcriptional regulat 85.2 1.4 4.7E-05 30.1 4.7 35 79-113 65-99 (162)
102 2k9s_A Arabinose operon regula 85.2 1.5 5.2E-05 28.6 4.7 43 65-107 4-47 (107)
103 3r4k_A Transcriptional regulat 85.2 0.61 2.1E-05 35.8 3.2 49 69-118 11-60 (260)
104 1qzz_A RDMB, aclacinomycin-10- 85.2 0.83 2.9E-05 35.5 4.0 45 69-116 41-85 (374)
105 2g7u_A Transcriptional regulat 85.1 0.81 2.8E-05 34.8 3.8 48 69-118 19-66 (257)
106 2qko_A Possible transcriptiona 85.1 0.89 3E-05 31.8 3.8 47 53-99 21-67 (215)
107 2pn6_A ST1022, 150AA long hypo 85.0 1.2 4.2E-05 30.6 4.4 45 67-113 6-50 (150)
108 4hbl_A Transcriptional regulat 84.8 1.3 4.4E-05 30.1 4.4 35 79-113 54-88 (149)
109 3hsr_A HTH-type transcriptiona 84.8 1.6 5.4E-05 29.3 4.8 37 77-113 47-83 (140)
110 1yyv_A Putative transcriptiona 84.6 1.1 3.9E-05 31.1 4.1 56 56-114 23-83 (131)
111 1v4r_A Transcriptional repress 84.6 2.7 9.2E-05 27.4 5.8 52 63-114 14-69 (102)
112 3boq_A Transcriptional regulat 84.3 1.4 4.9E-05 29.9 4.5 36 78-113 60-95 (160)
113 3k0l_A Repressor protein; heli 84.3 1.8 6.3E-05 29.7 5.1 35 79-113 59-93 (162)
114 3s2w_A Transcriptional regulat 84.0 1.6 5.4E-05 29.9 4.6 35 79-113 63-97 (159)
115 1r7j_A Conserved hypothetical 84.0 3 0.0001 27.7 5.9 48 63-114 7-54 (95)
116 3t8r_A Staphylococcus aureus C 84.0 2.4 8E-05 29.9 5.6 48 66-113 13-61 (143)
117 1s3j_A YUSO protein; structura 84.0 1.2 4.1E-05 30.0 3.9 35 79-113 50-84 (155)
118 1q1h_A TFE, transcription fact 83.8 1 3.6E-05 29.5 3.5 37 77-113 30-66 (110)
119 3qph_A TRMB, A global transcri 83.6 0.13 4.5E-06 41.6 -1.3 49 69-120 24-72 (342)
120 2rdp_A Putative transcriptiona 83.6 1.4 4.8E-05 29.5 4.1 35 79-113 55-89 (150)
121 1jgs_A Multiple antibiotic res 83.6 1.5 5E-05 29.0 4.2 35 79-113 47-81 (138)
122 2pex_A Transcriptional regulat 83.4 1.9 6.4E-05 29.1 4.7 36 79-114 60-95 (153)
123 3tqn_A Transcriptional regulat 83.4 1.6 5.4E-05 29.4 4.4 50 65-114 14-67 (113)
124 1z91_A Organic hydroperoxide r 82.9 1.2 4.1E-05 29.7 3.5 35 79-113 53-87 (147)
125 2nyx_A Probable transcriptiona 82.8 1.4 4.8E-05 30.7 4.0 35 79-113 58-92 (168)
126 2f2e_A PA1607; transcription f 82.7 1 3.5E-05 31.7 3.3 56 56-114 12-71 (146)
127 2v79_A DNA replication protein 82.5 1.6 5.3E-05 31.1 4.2 43 71-113 42-84 (135)
128 3e6m_A MARR family transcripti 82.5 1.5 5.1E-05 30.1 4.0 36 79-114 66-101 (161)
129 2ia2_A Putative transcriptiona 82.4 1.2 4.2E-05 34.0 3.9 48 69-118 26-73 (265)
130 2ia0_A Putative HTH-type trans 82.4 1.9 6.6E-05 31.1 4.7 50 62-113 15-64 (171)
131 1tw3_A COMT, carminomycin 4-O- 82.3 1.3 4.6E-05 34.2 4.1 47 69-118 44-90 (360)
132 2h09_A Transcriptional regulat 82.0 3.4 0.00012 28.3 5.7 36 79-114 53-88 (155)
133 1x19_A CRTF-related protein; m 81.7 1.4 4.8E-05 34.3 4.0 37 78-114 62-98 (359)
134 2ek5_A Predicted transcription 81.6 2.1 7.2E-05 29.8 4.5 40 76-115 23-63 (129)
135 4a5n_A Uncharacterized HTH-typ 81.6 2.4 8.3E-05 30.0 4.9 37 78-114 37-74 (131)
136 2fbk_A Transcriptional regulat 81.5 1.9 6.6E-05 30.3 4.4 34 80-113 86-119 (181)
137 3f6v_A Possible transcriptiona 81.4 1.5 5.1E-05 31.4 3.8 46 68-116 62-107 (151)
138 3k2z_A LEXA repressor; winged 81.1 1.4 4.7E-05 32.2 3.6 39 77-115 21-59 (196)
139 1xmk_A Double-stranded RNA-spe 80.9 6.1 0.00021 25.9 6.4 55 64-120 11-66 (79)
140 2e1c_A Putative HTH-type trans 80.7 2.2 7.5E-05 30.8 4.5 50 62-113 25-74 (171)
141 1wi9_A Protein C20ORF116 homol 79.5 3.3 0.00011 27.4 4.6 46 65-112 8-53 (72)
142 2iai_A Putative transcriptiona 79.2 1.4 4.9E-05 31.3 3.1 34 65-98 35-68 (230)
143 3df8_A Possible HXLR family tr 78.8 2.1 7.3E-05 28.7 3.7 53 59-114 18-77 (111)
144 1okr_A MECI, methicillin resis 78.8 2.2 7.4E-05 28.0 3.7 45 68-114 14-62 (123)
145 1tc3_C Protein (TC3 transposas 78.7 3 0.0001 22.4 3.7 28 81-108 22-49 (51)
146 3dp7_A SAM-dependent methyltra 78.6 2 6.9E-05 33.8 4.0 47 70-118 41-87 (363)
147 3i4p_A Transcriptional regulat 78.4 2.8 9.7E-05 29.6 4.4 46 66-113 5-50 (162)
148 3by6_A Predicted transcription 78.2 3 0.0001 28.8 4.4 51 65-115 16-70 (126)
149 1xd7_A YWNA; structural genomi 78.2 5.7 0.00019 27.7 5.9 47 65-113 10-56 (145)
150 3b73_A PHIH1 repressor-like pr 78.1 3.4 0.00011 28.6 4.6 52 63-116 12-65 (111)
151 2b0l_A GTP-sensing transcripti 78.0 1.9 6.5E-05 29.0 3.2 38 77-114 39-77 (102)
152 3lwf_A LIN1550 protein, putati 77.2 3.5 0.00012 29.9 4.7 48 66-113 29-77 (159)
153 3gbg_A TCP pilus virulence reg 77.2 3 0.0001 30.9 4.5 38 65-102 170-207 (276)
154 1mzb_A Ferric uptake regulatio 77.2 4.2 0.00014 28.1 4.9 46 69-114 23-73 (136)
155 3kp7_A Transcriptional regulat 77.1 1.9 6.5E-05 29.1 3.1 36 78-113 49-84 (151)
156 1p4x_A Staphylococcal accessor 77.1 3.1 0.0001 32.1 4.6 44 70-113 164-207 (250)
157 3mcz_A O-methyltransferase; ad 76.8 2.5 8.7E-05 32.5 4.0 38 80-118 56-93 (352)
158 2rae_A Transcriptional regulat 76.8 3.6 0.00012 28.1 4.5 45 55-99 12-56 (207)
159 2o03_A Probable zinc uptake re 76.6 4.7 0.00016 27.6 5.0 46 69-115 16-66 (131)
160 1hsj_A Fusion protein consisti 76.3 2.5 8.6E-05 34.0 4.0 45 69-113 409-453 (487)
161 1z4h_A TORI, TOR inhibition pr 76.0 1.9 6.6E-05 26.5 2.6 26 77-102 7-32 (66)
162 2qvo_A Uncharacterized protein 75.2 2.5 8.5E-05 27.2 3.1 35 77-111 27-61 (95)
163 2g9w_A Conserved hypothetical 75.0 5 0.00017 27.4 4.8 46 68-114 13-62 (138)
164 1fp2_A Isoflavone O-methyltran 74.9 2.7 9.1E-05 32.7 3.7 43 70-113 42-87 (352)
165 3c7j_A Transcriptional regulat 74.8 3.9 0.00013 30.7 4.6 49 65-113 31-82 (237)
166 1bia_A BIRA bifunctional prote 74.8 4.3 0.00015 32.1 4.9 43 67-111 8-50 (321)
167 1fp1_D Isoliquiritigenin 2'-O- 74.6 3.4 0.00012 32.4 4.3 34 80-113 62-101 (372)
168 3fiw_A Putative TETR-family tr 74.5 3.2 0.00011 30.0 3.8 46 54-99 19-64 (211)
169 3sxy_A Transcriptional regulat 73.6 4 0.00014 29.8 4.3 38 76-113 31-68 (218)
170 3dcf_A Transcriptional regulat 73.2 4 0.00014 27.8 3.9 42 57-98 28-69 (218)
171 3neu_A LIN1836 protein; struct 73.1 12 0.00039 25.5 6.3 50 65-114 18-71 (125)
172 1uly_A Hypothetical protein PH 71.9 5.7 0.0002 29.3 4.8 44 67-113 23-66 (192)
173 2kfs_A Conserved hypothetical 71.8 2.5 8.5E-05 31.3 2.7 25 78-102 29-53 (148)
174 4fx0_A Probable transcriptiona 71.7 4.5 0.00015 27.9 3.9 36 78-113 50-85 (148)
175 3ihu_A Transcriptional regulat 71.6 5.4 0.00018 29.2 4.5 38 76-113 35-72 (222)
176 2hxi_A Putative transcriptiona 71.5 5.2 0.00018 29.6 4.5 44 55-98 24-67 (241)
177 2k4b_A Transcriptional regulat 71.3 4.2 0.00014 27.3 3.6 44 69-114 40-87 (99)
178 1hw1_A FADR, fatty acid metabo 71.1 4.8 0.00016 29.5 4.2 47 67-113 14-64 (239)
179 3bni_A Putative TETR-family tr 70.9 2.6 9.1E-05 30.0 2.6 43 57-99 40-82 (229)
180 3u1d_A Uncharacterized protein 70.7 7.6 0.00026 28.5 5.1 45 69-113 34-79 (151)
181 3p9c_A Caffeic acid O-methyltr 70.2 5.6 0.00019 31.4 4.7 45 69-113 45-94 (364)
182 3hrs_A Metalloregulator SCAR; 70.0 6.6 0.00023 29.1 4.8 38 77-114 17-54 (214)
183 4a6d_A Hydroxyindole O-methylt 69.9 6 0.0002 31.1 4.7 44 69-113 33-76 (353)
184 2fxa_A Protease production reg 69.7 4.9 0.00017 29.4 4.0 36 79-114 61-96 (207)
185 2qtq_A Transcriptional regulat 69.6 6.7 0.00023 26.6 4.4 42 57-98 13-54 (213)
186 1d5y_A ROB transcription facto 69.4 4.6 0.00016 30.1 3.8 43 65-107 4-46 (292)
187 2hs5_A Putative transcriptiona 69.0 5.9 0.0002 29.6 4.4 39 76-114 47-85 (239)
188 2di3_A Bacterial regulatory pr 69.0 4.6 0.00016 29.9 3.7 37 76-112 23-60 (239)
189 4ham_A LMO2241 protein; struct 68.2 6 0.00021 27.1 3.9 49 65-113 19-71 (134)
190 1zg3_A Isoflavanone 4'-O-methy 68.1 3.9 0.00013 31.8 3.3 44 69-113 35-81 (358)
191 4aik_A Transcriptional regulat 67.9 9.4 0.00032 26.3 4.9 42 71-113 38-79 (151)
192 2g7l_A TETR-family transcripti 67.8 6.5 0.00022 29.1 4.3 44 56-99 15-58 (243)
193 1p4x_A Staphylococcal accessor 67.3 8 0.00027 29.7 4.9 45 69-113 39-83 (250)
194 1y6u_A XIS, excisionase from t 66.9 3.4 0.00012 26.5 2.3 26 78-103 14-39 (70)
195 2fe3_A Peroxide operon regulat 66.7 13 0.00044 25.9 5.5 46 69-115 27-77 (145)
196 2pjp_A Selenocysteine-specific 65.6 11 0.00038 25.5 4.8 56 60-117 62-117 (121)
197 1jko_C HIN recombinase, DNA-in 64.9 5.9 0.0002 21.6 2.8 23 81-103 22-44 (52)
198 2w57_A Ferric uptake regulatio 64.2 7.7 0.00026 27.4 3.9 46 69-114 22-72 (150)
199 3qqa_A CMER; alpha-helical, he 64.0 1.9 6.3E-05 29.6 0.6 44 55-98 14-57 (216)
200 2hku_A A putative transcriptio 63.9 6.9 0.00024 27.1 3.6 41 57-98 17-57 (215)
201 4ev0_A Transcription regulator 63.9 13 0.00045 25.7 5.1 35 80-114 163-197 (216)
202 3aqt_A Bacterial regulatory pr 63.8 3 0.0001 30.0 1.7 41 58-98 44-84 (245)
203 2qc0_A Uncharacterized protein 63.7 9.3 0.00032 30.9 4.8 38 79-116 310-347 (373)
204 3dkw_A DNR protein; CRP-FNR, H 63.3 13 0.00044 26.0 5.0 36 80-115 178-213 (227)
205 3mvp_A TETR/ACRR transcription 63.2 5.2 0.00018 27.2 2.8 43 57-99 23-65 (217)
206 1ft9_A Carbon monoxide oxidati 63.1 12 0.00041 26.3 4.8 36 81-116 164-199 (222)
207 1ug2_A 2610100B20RIK gene prod 63.0 19 0.00063 25.0 5.5 39 69-107 44-87 (95)
208 3ppb_A Putative TETR family tr 62.9 12 0.0004 24.9 4.5 40 59-98 8-47 (195)
209 1sd4_A Penicillinase repressor 62.9 11 0.00037 24.6 4.3 45 68-114 14-62 (126)
210 3kz9_A SMCR; transcriptional r 62.9 11 0.00037 25.3 4.3 39 61-99 18-56 (206)
211 3gzi_A Transcriptional regulat 62.6 7 0.00024 26.8 3.4 39 61-99 18-56 (218)
212 3mwm_A ZUR, putative metal upt 62.5 12 0.0004 26.0 4.6 45 69-114 19-68 (139)
213 3e6c_C CPRK, cyclic nucleotide 62.4 11 0.00039 27.1 4.7 36 80-115 177-212 (250)
214 2wv0_A YVOA, HTH-type transcri 62.3 18 0.00061 27.2 5.9 49 65-113 15-67 (243)
215 3dv8_A Transcriptional regulat 62.2 6 0.00021 27.6 3.0 38 80-118 169-206 (220)
216 2xig_A Ferric uptake regulatio 62.1 15 0.0005 25.9 5.1 45 69-114 32-81 (150)
217 3edp_A LIN2111 protein; APC883 61.9 17 0.00059 27.2 5.7 49 65-113 14-66 (236)
218 2gqq_A Leucine-responsive regu 61.8 2.4 8.1E-05 29.9 0.8 46 65-112 14-59 (163)
219 2dg7_A Putative transcriptiona 61.8 13 0.00044 25.1 4.6 38 62-99 9-46 (195)
220 2ozu_A Histone acetyltransfera 61.7 11 0.00039 30.5 4.9 54 56-112 184-243 (284)
221 3knw_A Putative transcriptiona 61.3 6.3 0.00022 26.8 2.9 42 57-98 11-52 (212)
222 3ic7_A Putative transcriptiona 60.7 2.7 9.3E-05 28.9 1.0 50 65-114 16-69 (126)
223 2hxo_A Putative TETR-family tr 60.7 15 0.00051 26.9 5.1 44 56-99 12-55 (237)
224 2obp_A Putative DNA-binding pr 60.3 11 0.00037 25.6 3.9 38 76-113 32-69 (96)
225 1hqc_A RUVB; extended AAA-ATPa 60.2 12 0.00043 27.8 4.7 53 64-116 247-301 (324)
226 2zcx_A SCO7815, TETR-family tr 60.1 7 0.00024 28.1 3.2 42 58-99 21-62 (231)
227 3q0w_A HTH-type transcriptiona 59.7 7.6 0.00026 27.5 3.2 42 58-99 42-83 (236)
228 3f8m_A GNTR-family protein tra 59.2 9.5 0.00032 28.9 3.9 43 76-118 31-74 (248)
229 2iu5_A DHAS, YCEG, HTH-type dh 59.2 13 0.00045 25.3 4.3 37 62-98 15-51 (195)
230 3qkx_A Uncharacterized HTH-typ 59.2 13 0.00045 24.5 4.2 36 63-98 11-46 (188)
231 2p4w_A Transcriptional regulat 58.9 14 0.00046 27.6 4.6 43 69-114 20-62 (202)
232 3kkc_A TETR family transcripti 58.3 5 0.00017 26.7 1.9 39 60-98 12-50 (177)
233 3ke2_A Uncharacterized protein 58.2 9.9 0.00034 27.3 3.6 44 65-110 19-63 (117)
234 3cta_A Riboflavin kinase; stru 58.0 6.9 0.00024 28.9 2.9 36 78-113 25-60 (230)
235 2yve_A Transcriptional regulat 57.7 14 0.00047 25.2 4.2 36 64-99 8-43 (185)
236 3kcc_A Catabolite gene activat 57.5 33 0.0011 25.0 6.5 36 80-115 217-252 (260)
237 1zk8_A Transcriptional regulat 57.3 12 0.00041 24.9 3.8 40 59-98 7-46 (183)
238 3bwg_A Uncharacterized HTH-typ 57.3 24 0.00084 26.3 5.9 48 66-113 11-62 (239)
239 2pjp_A Selenocysteine-specific 57.3 8.8 0.0003 26.0 3.1 51 65-118 8-58 (121)
240 2p5k_A Arginine repressor; DNA 57.2 20 0.00067 20.7 4.4 37 71-113 12-53 (64)
241 3ryp_A Catabolite gene activat 57.0 35 0.0012 23.4 6.3 36 80-115 167-202 (210)
242 3vp5_A Transcriptional regulat 56.9 16 0.00053 25.1 4.4 37 62-98 14-50 (189)
243 1lva_A Selenocysteine-specific 56.4 24 0.00082 26.9 5.8 61 59-119 136-196 (258)
244 2qlz_A Transcription factor PF 56.2 12 0.00041 28.7 4.0 42 78-119 176-217 (232)
245 2v7f_A RPS19, RPS19E SSU ribos 55.7 18 0.00062 26.2 4.7 45 67-114 57-115 (150)
246 2dk8_A DNA-directed RNA polyme 55.7 42 0.0014 22.2 6.4 51 60-111 10-61 (81)
247 2oz6_A Virulence factor regula 55.1 39 0.0013 23.0 6.3 35 80-114 164-198 (207)
248 2pq8_A Probable histone acetyl 55.0 10 0.00035 30.7 3.6 54 56-113 179-238 (278)
249 3f1b_A TETR-like transcription 55.0 9.3 0.00032 25.6 2.9 38 62-99 16-53 (203)
250 3he0_A Transcriptional regulat 54.8 16 0.00055 24.3 4.1 40 59-98 10-49 (196)
251 4fe7_A Xylose operon regulator 54.4 8.9 0.00031 30.2 3.1 43 64-106 305-347 (412)
252 1sgm_A Putative HTH-type trans 54.4 13 0.00046 24.6 3.6 37 62-98 8-44 (191)
253 2yu3_A DNA-directed RNA polyme 54.4 16 0.00054 24.8 4.0 54 60-113 33-86 (95)
254 2guh_A Putative TETR-family tr 54.2 9.7 0.00033 26.9 3.0 43 58-100 37-79 (214)
255 3e97_A Transcriptional regulat 54.1 13 0.00046 26.1 3.8 36 80-115 175-210 (231)
256 3cwr_A Transcriptional regulat 53.7 9.6 0.00033 25.6 2.8 41 59-99 16-56 (208)
257 3mnl_A KSTR, transcriptional r 53.6 2.6 8.8E-05 28.6 -0.2 41 59-99 19-59 (203)
258 1pb6_A Hypothetical transcript 53.5 8.9 0.00031 26.0 2.6 40 60-99 18-57 (212)
259 2id3_A Putative transcriptiona 53.4 4.9 0.00017 28.4 1.3 43 57-99 37-79 (225)
260 2fmy_A COOA, carbon monoxide o 53.3 13 0.00046 26.0 3.6 36 80-115 167-203 (220)
261 1j9i_A GPNU1 DBD;, terminase s 53.3 6.5 0.00022 24.0 1.7 24 80-103 2-25 (68)
262 1fx7_A Iron-dependent represso 53.3 4.5 0.00015 30.1 1.1 33 82-114 26-58 (230)
263 3to7_A Histone acetyltransfera 53.2 20 0.00067 29.1 4.9 55 57-115 180-240 (276)
264 1o57_A PUR operon repressor; p 53.2 17 0.00059 28.6 4.6 41 69-109 12-56 (291)
265 2ou2_A Histone acetyltransfera 53.0 18 0.00061 29.3 4.7 55 56-113 177-242 (280)
266 3col_A Putative transcription 52.8 13 0.00044 24.7 3.3 40 59-98 9-48 (196)
267 2q24_A Putative TETR family tr 52.7 17 0.00057 24.6 4.0 37 61-98 16-52 (194)
268 3egq_A TETR family transcripti 52.4 17 0.00057 24.0 3.8 36 64-99 8-43 (170)
269 2dg8_A Putative TETR-family tr 51.6 15 0.0005 25.0 3.5 38 61-98 10-47 (193)
270 3g1o_A Transcriptional regulat 51.6 13 0.00046 26.5 3.5 43 57-99 40-82 (255)
271 1zyb_A Transcription regulator 51.5 34 0.0012 24.3 5.6 35 80-114 186-220 (232)
272 3g7r_A Putative transcriptiona 51.4 16 0.00056 25.5 3.8 43 57-99 32-74 (221)
273 2qib_A TETR-family transcripti 51.4 11 0.00039 26.6 3.0 37 62-98 15-51 (231)
274 2bgc_A PRFA; bacterial infecti 51.0 14 0.00047 26.5 3.5 36 80-115 169-205 (238)
275 2v57_A TETR family transcripti 51.0 16 0.00053 24.5 3.5 40 58-99 12-51 (190)
276 3b02_A Transcriptional regulat 50.8 37 0.0013 23.3 5.6 35 80-114 139-173 (195)
277 3bru_A Regulatory protein, TET 50.7 22 0.00076 24.2 4.4 42 58-99 28-69 (222)
278 3bqz_B HTH-type transcriptiona 50.4 15 0.00052 24.4 3.4 35 65-99 7-41 (194)
279 2zb9_A Putative transcriptiona 50.2 8.3 0.00028 26.6 2.1 40 60-99 23-62 (214)
280 2zcw_A TTHA1359, transcription 50.2 15 0.00053 25.4 3.5 35 80-114 146-180 (202)
281 1pdn_C Protein (PRD paired); p 50.2 24 0.00081 22.4 4.2 40 67-110 24-63 (128)
282 2qq9_A Diphtheria toxin repres 49.8 14 0.00049 27.3 3.5 35 80-114 24-58 (226)
283 3ccy_A Putative TETR-family tr 49.7 29 0.00099 23.6 4.8 39 60-98 14-52 (203)
284 2g7s_A Transcriptional regulat 49.7 13 0.00046 24.5 3.0 37 63-99 11-47 (194)
285 3on2_A Probable transcriptiona 49.5 17 0.00058 24.1 3.5 38 61-98 13-50 (199)
286 1umq_A Photosynthetic apparatu 49.4 27 0.00093 22.7 4.4 40 60-102 36-76 (81)
287 3on4_A Transcriptional regulat 49.4 19 0.00066 23.8 3.8 41 59-99 9-49 (191)
288 2y2z_A SIM16, SIMR, putative r 49.4 24 0.00083 26.5 4.7 41 59-99 26-66 (267)
289 3eet_A Putative GNTR-family tr 49.2 19 0.00066 27.6 4.2 49 65-113 34-86 (272)
290 3iwz_A CAP-like, catabolite ac 49.1 16 0.00056 25.5 3.5 35 80-114 187-221 (230)
291 4aci_A HTH-type transcriptiona 49.0 7.4 0.00025 26.2 1.6 43 57-99 11-53 (191)
292 3him_A Probable transcriptiona 47.9 14 0.00049 24.8 2.9 41 58-98 14-54 (211)
293 3reo_A (ISO)eugenol O-methyltr 47.8 22 0.00077 27.9 4.5 45 69-113 46-96 (368)
294 2opt_A Actii protein; helical 47.3 22 0.00076 26.1 4.1 43 57-99 3-45 (234)
295 3lwj_A Putative TETR-family tr 46.6 20 0.00069 24.0 3.6 41 59-99 11-51 (202)
296 2x48_A CAG38821; archeal virus 46.3 38 0.0013 19.0 4.6 22 81-102 32-53 (55)
297 3s5r_A Transcriptional regulat 46.2 21 0.00072 24.2 3.6 42 58-99 8-49 (216)
298 3rd3_A Probable transcriptiona 46.1 21 0.00073 23.7 3.6 42 58-99 8-49 (197)
299 3k9t_A Putative peptidase; str 46.1 12 0.00043 31.9 2.9 35 77-111 399-433 (435)
300 3qbm_A TETR transcriptional re 45.9 23 0.00077 23.6 3.7 37 63-99 10-46 (199)
301 3eyy_A Putative iron uptake re 45.6 26 0.0009 24.3 4.1 44 69-114 24-72 (145)
302 3nrg_A TETR family transcripti 45.5 22 0.00075 24.1 3.6 41 59-99 12-52 (217)
303 3dew_A Transcriptional regulat 45.5 17 0.00057 24.2 3.0 37 63-99 11-47 (206)
304 3eqx_A FIC domain containing t 45.4 27 0.00091 28.5 4.7 44 69-114 302-345 (373)
305 3la7_A Global nitrogen regulat 45.3 20 0.00067 25.8 3.5 35 80-114 193-227 (243)
306 2qm3_A Predicted methyltransfe 45.0 17 0.00057 28.8 3.3 45 66-114 45-89 (373)
307 3d0s_A Transcriptional regulat 44.5 21 0.00073 25.0 3.5 35 80-114 177-211 (227)
308 1g2h_A Transcriptional regulat 44.2 15 0.0005 22.2 2.3 38 62-103 18-56 (61)
309 3lhq_A Acrab operon repressor 44.2 23 0.00078 23.8 3.5 39 61-99 15-53 (220)
310 1k78_A Paired box protein PAX5 44.0 32 0.0011 23.2 4.3 40 67-110 39-78 (149)
311 2g7g_A RHA04620, putative tran 43.6 25 0.00084 25.0 3.8 38 59-98 10-47 (213)
312 2fq4_A Transcriptional regulat 43.4 22 0.00075 24.1 3.4 36 63-98 15-50 (192)
313 2gau_A Transcriptional regulat 43.0 23 0.00079 24.9 3.5 35 80-114 180-214 (232)
314 2pz9_A Putative regulatory pro 43.0 12 0.00041 26.3 2.0 43 56-98 26-68 (226)
315 2o7t_A Transcriptional regulat 42.9 26 0.00087 23.8 3.7 36 64-99 12-47 (199)
316 3vpr_A Transcriptional regulat 42.7 25 0.00085 23.7 3.5 34 65-98 8-41 (190)
317 2qen_A Walker-type ATPase; unk 42.6 41 0.0014 24.8 5.0 34 80-113 295-333 (350)
318 3o60_A LIN0861 protein; PSI, M 42.3 16 0.00056 25.5 2.6 43 56-98 15-58 (185)
319 3e7l_A Transcriptional regulat 42.1 44 0.0015 19.9 4.3 39 63-103 17-55 (63)
320 2w48_A Sorbitol operon regulat 42.0 22 0.00077 27.5 3.6 35 79-113 20-55 (315)
321 1u78_A TC3 transposase, transp 41.9 46 0.0016 21.6 4.7 39 68-110 14-52 (141)
322 2zkz_A Transcriptional repress 41.6 27 0.00091 22.4 3.4 34 79-113 40-73 (99)
323 2np3_A Putative TETR-family re 40.6 5.8 0.0002 27.4 0.0 38 61-98 31-68 (212)
324 2p8t_A Hypothetical protein PH 40.5 25 0.00085 26.8 3.6 47 67-114 18-64 (200)
325 3jsj_A Putative TETR-family tr 40.5 33 0.0011 22.8 3.9 40 59-99 8-47 (190)
326 1ntc_A Protein (nitrogen regul 40.5 38 0.0013 21.7 4.1 37 65-103 51-87 (91)
327 3l7w_A Putative uncharacterize 40.4 31 0.0011 22.7 3.6 45 69-113 14-59 (108)
328 3c07_A Putative TETR-family tr 39.7 35 0.0012 25.2 4.2 41 59-99 40-80 (273)
329 3bjb_A Probable transcriptiona 39.5 30 0.001 23.9 3.7 36 63-98 25-60 (207)
330 3nxc_A HTH-type protein SLMA; 39.5 36 0.0012 22.9 4.0 43 57-99 21-64 (212)
331 3anp_C Transcriptional repress 39.2 28 0.00095 23.7 3.4 34 65-98 14-47 (204)
332 2qwt_A Transcriptional regulat 38.7 40 0.0014 22.9 4.2 34 64-98 17-50 (196)
333 3b81_A Transcriptional regulat 38.5 29 0.001 23.1 3.4 36 63-98 14-49 (203)
334 1z0x_A Transcriptional regulat 38.4 44 0.0015 23.7 4.5 37 62-98 7-44 (220)
335 2oi8_A Putative regulatory pro 38.2 26 0.0009 24.7 3.2 39 61-99 17-55 (216)
336 3f0c_A TETR-molecule A, transc 37.9 36 0.0012 23.0 3.8 41 59-99 10-50 (216)
337 1ui5_A A-factor receptor homol 37.9 41 0.0014 23.4 4.2 40 59-98 8-47 (215)
338 2f07_A YVDT; helix-turn-helix, 37.8 46 0.0016 22.6 4.3 36 63-98 13-48 (197)
339 3lsj_A DEST; transcriptional r 37.7 27 0.00092 23.9 3.1 39 61-99 12-51 (220)
340 3rh2_A Hypothetical TETR-like 37.4 26 0.00088 23.9 3.0 36 64-99 7-42 (212)
341 2qby_A CDC6 homolog 1, cell di 36.9 39 0.0013 25.2 4.1 30 84-113 316-348 (386)
342 1t33_A Putative transcriptiona 36.9 22 0.00074 24.4 2.5 36 63-99 15-50 (224)
343 1u8b_A ADA polyprotein; protei 36.7 40 0.0014 22.5 3.8 40 66-107 81-120 (133)
344 3ni7_A Bacterial regulatory pr 36.6 39 0.0013 23.9 3.9 36 63-98 10-45 (213)
345 2oer_A Probable transcriptiona 36.2 21 0.00073 24.7 2.4 37 62-98 26-62 (214)
346 2eh3_A Transcriptional regulat 36.2 34 0.0012 22.8 3.4 34 65-98 7-40 (179)
347 2of7_A Putative TETR-family tr 35.9 31 0.0011 24.9 3.4 41 59-99 47-87 (260)
348 2elh_A CG11849-PA, LD40883P; s 35.9 55 0.0019 20.5 4.2 37 68-108 30-66 (87)
349 2fd5_A Transcriptional regulat 35.7 40 0.0014 22.3 3.7 36 64-99 11-46 (180)
350 3lmm_A Uncharacterized protein 35.6 56 0.0019 28.1 5.4 48 65-114 431-483 (583)
351 2qby_B CDC6 homolog 3, cell di 35.6 27 0.00092 26.5 3.1 32 82-113 305-339 (384)
352 2ibd_A Possible transcriptiona 35.6 34 0.0012 23.3 3.4 35 64-98 18-52 (204)
353 3nnr_A Transcriptional regulat 35.3 29 0.00098 24.1 3.0 36 64-99 9-44 (228)
354 2fna_A Conserved hypothetical 34.9 1.1E+02 0.0038 22.4 6.4 50 65-119 291-346 (357)
355 2k27_A Paired box protein PAX- 34.8 33 0.0011 23.5 3.2 40 67-110 32-71 (159)
356 3ljl_A Transcriptional regulat 34.6 20 0.00068 23.8 2.0 38 62-99 16-53 (156)
357 1vi0_A Transcriptional regulat 34.1 36 0.0012 23.4 3.3 36 63-98 11-46 (206)
358 2wui_A MEXZ, transcriptional r 34.1 34 0.0012 23.5 3.2 35 64-98 15-49 (210)
359 2ra5_A Putative transcriptiona 34.0 11 0.00036 28.5 0.5 37 77-113 36-73 (247)
360 3dpj_A Transcription regulator 33.9 35 0.0012 22.7 3.1 37 63-99 11-47 (194)
361 3pas_A TETR family transcripti 33.8 18 0.00061 23.9 1.6 36 64-99 12-47 (195)
362 3kkd_A Transcriptional regulat 33.7 31 0.0011 24.1 3.0 41 59-99 34-74 (237)
363 4ich_A Transcriptional regulat 33.7 26 0.00089 26.2 2.7 42 58-99 118-159 (311)
364 1rr7_A Middle operon regulator 33.7 23 0.0008 24.8 2.3 27 81-107 93-119 (129)
365 3c2b_A Transcriptional regulat 33.6 30 0.001 23.6 2.8 38 62-99 17-54 (221)
366 4dyq_A Gene 1 protein; GP1, oc 33.0 45 0.0015 23.1 3.7 36 64-103 16-52 (140)
367 2xi8_A Putative transcription 33.0 27 0.00092 19.6 2.1 22 81-102 15-36 (66)
368 3npi_A TETR family regulatory 32.8 23 0.0008 25.2 2.2 42 58-99 16-57 (251)
369 3eup_A Transcriptional regulat 32.7 14 0.00047 24.8 0.9 37 63-99 14-50 (204)
370 2gen_A Probable transcriptiona 32.5 54 0.0018 22.2 4.0 36 63-98 10-45 (197)
371 2ras_A Transcriptional regulat 32.5 39 0.0013 22.9 3.2 35 64-98 15-49 (212)
372 2zcm_A Biofilm operon icaabcd 32.5 43 0.0015 22.4 3.4 35 64-98 11-45 (192)
373 3frq_A Repressor protein MPHR( 31.7 26 0.00089 23.6 2.2 38 62-99 10-47 (195)
374 2k9l_A RNA polymerase sigma fa 31.5 70 0.0024 20.1 4.1 43 64-106 32-74 (76)
375 2xdn_A HTH-type transcriptiona 30.9 45 0.0015 22.7 3.3 35 64-98 15-49 (210)
376 3bqy_A Putative TETR family tr 30.7 37 0.0013 24.1 3.0 36 64-99 6-41 (209)
377 3fx3_A Cyclic nucleotide-bindi 30.4 49 0.0017 23.2 3.6 36 81-118 179-214 (237)
378 2hyt_A TETR-family transcripti 30.2 48 0.0016 22.5 3.4 35 64-98 16-50 (197)
379 1eto_A FIS, factor for inversi 30.1 60 0.002 21.6 3.8 21 82-102 73-93 (98)
380 2d6y_A Putative TETR family re 29.9 57 0.002 22.3 3.8 37 63-99 11-47 (202)
381 3hta_A EBRA repressor; TETR fa 29.9 46 0.0016 23.2 3.3 39 61-99 29-67 (217)
382 2ict_A Antitoxin HIGA; helix-t 29.7 99 0.0034 18.9 4.7 22 81-102 22-43 (94)
383 2r1j_L Repressor protein C2; p 29.2 34 0.0012 19.3 2.1 22 81-102 19-40 (68)
384 4hku_A LMO2814 protein, TETR t 29.1 50 0.0017 22.2 3.3 36 64-99 11-46 (178)
385 3cdl_A Transcriptional regulat 28.7 36 0.0012 23.2 2.5 34 65-98 14-47 (203)
386 4ets_A Ferric uptake regulatio 28.7 1E+02 0.0036 21.7 5.1 45 69-114 38-89 (162)
387 1uxc_A FRUR (1-57), fructose r 28.6 37 0.0013 20.8 2.3 21 82-102 2-22 (65)
388 1lva_A Selenocysteine-specific 28.6 1.3E+02 0.0045 22.7 5.9 42 77-118 213-254 (258)
389 3vib_A MTRR; helix-turn-helix 28.2 54 0.0018 22.3 3.4 35 64-98 14-48 (210)
390 2qlz_A Transcription factor PF 28.0 16 0.00055 28.0 0.6 42 68-112 16-57 (232)
391 1kgs_A DRRD, DNA binding respo 28.0 1.1E+02 0.0037 21.0 5.0 59 62-120 152-222 (225)
392 1zug_A Phage 434 CRO protein; 27.9 36 0.0012 19.4 2.1 22 81-102 17-38 (71)
393 2gmg_A Hypothetical protein PF 27.8 32 0.0011 24.1 2.1 35 66-103 13-51 (105)
394 1r69_A Repressor protein CI; g 27.8 37 0.0013 19.3 2.1 22 81-102 15-36 (69)
395 3geu_A Intercellular adhesion 27.3 24 0.00081 23.6 1.3 34 65-98 8-41 (189)
396 2rek_A Putative TETR-family tr 26.9 44 0.0015 22.5 2.7 35 63-98 19-53 (199)
397 3qq6_A HTH-type transcriptiona 26.9 37 0.0013 20.6 2.1 22 81-102 24-45 (78)
398 2dl6_A Chromodomain-helicase-D 26.9 36 0.0012 22.8 2.2 50 20-86 10-59 (83)
399 2w53_A Repressor, SMet; antibi 26.8 83 0.0028 21.5 4.2 36 63-98 14-49 (219)
400 1nd9_A Translation initiation 26.8 37 0.0013 18.8 2.0 26 81-109 3-28 (49)
401 2hgc_A YJCQ protein; SR346, st 26.8 37 0.0013 23.4 2.3 27 87-113 23-49 (102)
402 3e7q_A Transcriptional regulat 26.6 24 0.00082 23.7 1.3 37 63-99 17-53 (215)
403 3cuq_B Vacuolar protein-sortin 26.5 87 0.003 23.7 4.6 53 59-113 149-201 (218)
404 3omt_A Uncharacterized protein 26.5 40 0.0014 19.8 2.1 22 81-102 22-43 (73)
405 1o5l_A Transcriptional regulat 26.3 14 0.00048 26.0 0.0 35 80-114 164-198 (213)
406 2i10_A Putative TETR transcrip 26.3 41 0.0014 23.0 2.5 35 64-98 15-49 (202)
407 3bhq_A Transcriptional regulat 26.2 61 0.0021 22.1 3.4 35 64-98 16-50 (211)
408 2jn6_A Protein CGL2762, transp 26.2 46 0.0016 20.9 2.5 40 68-109 13-52 (97)
409 3trb_A Virulence-associated pr 26.2 37 0.0013 22.4 2.1 22 81-102 28-49 (104)
410 3cjd_A Transcriptional regulat 26.1 52 0.0018 22.5 3.0 35 64-98 16-50 (198)
411 1ku3_A Sigma factor SIGA; heli 25.9 54 0.0018 19.6 2.7 22 79-100 29-50 (73)
412 3crj_A Transcription regulator 25.8 62 0.0021 22.0 3.4 35 64-98 18-52 (199)
413 1stz_A Heat-inducible transcri 25.7 97 0.0033 24.7 4.9 39 77-115 33-73 (338)
414 1hlv_A CENP-B, major centromer 25.2 44 0.0015 21.9 2.4 37 68-106 15-51 (131)
415 2esh_A Conserved hypothetical 24.9 1.3E+02 0.0043 19.8 4.7 44 70-113 19-68 (118)
416 2wiu_B HTH-type transcriptiona 24.8 48 0.0016 19.9 2.3 36 64-102 12-47 (88)
417 1ys7_A Transcriptional regulat 24.7 1.2E+02 0.0042 20.8 4.8 59 62-120 160-230 (233)
418 3bs3_A Putative DNA-binding pr 24.2 46 0.0016 19.3 2.1 22 81-102 24-45 (76)
419 1adr_A P22 C2 repressor; trans 24.0 47 0.0016 19.2 2.1 22 81-102 19-40 (76)
420 1z6r_A MLC protein; transcript 24.0 1.1E+02 0.0038 24.0 4.9 46 67-114 19-64 (406)
421 2k9q_A Uncharacterized protein 23.7 47 0.0016 19.7 2.1 22 81-102 16-37 (77)
422 2oqr_A Sensory transduction pr 23.7 1.2E+02 0.0043 20.8 4.7 30 61-90 156-185 (230)
423 2ofy_A Putative XRE-family tra 23.5 1.2E+02 0.0043 18.0 4.2 21 82-102 29-49 (86)
424 2hyj_A Putative TETR-family tr 23.5 43 0.0015 22.9 2.1 34 65-98 17-50 (200)
425 1y7y_A C.AHDI; helix-turn-heli 23.4 49 0.0017 19.0 2.1 22 81-102 27-48 (74)
426 2a6c_A Helix-turn-helix motif; 23.2 48 0.0016 20.2 2.1 35 65-102 19-53 (83)
427 2lnb_A Z-DNA-binding protein 1 23.2 1.7E+02 0.0058 19.5 4.9 50 63-113 18-67 (80)
428 2b5a_A C.BCLI; helix-turn-heli 23.1 50 0.0017 19.2 2.1 22 81-102 24-45 (77)
429 3s8q_A R-M controller protein; 22.7 50 0.0017 19.7 2.1 22 81-102 25-46 (82)
430 2o0m_A Transcriptional regulat 22.6 18 0.00062 28.6 0.0 36 78-113 32-67 (345)
431 3b7h_A Prophage LP1 protein 11 22.5 47 0.0016 19.3 1.9 22 81-102 21-42 (78)
432 1xma_A Predicted transcription 22.4 88 0.003 21.8 3.6 23 91-113 73-95 (145)
433 2nx4_A Transcriptional regulat 22.3 56 0.0019 22.1 2.5 33 66-98 16-48 (194)
434 1jhf_A LEXA repressor; LEXA SO 22.2 86 0.0029 22.2 3.6 32 82-113 27-59 (202)
435 4g6q_A Putative uncharacterize 22.1 1.1E+02 0.0039 21.8 4.3 41 68-111 27-68 (182)
436 3g5g_A Regulatory protein; tra 22.0 1.2E+02 0.004 19.4 4.0 22 81-102 42-63 (99)
437 3qyf_A Crispr-associated prote 21.6 41 0.0014 27.6 1.9 34 79-119 224-257 (324)
438 2jj7_A Hemolysin II regulatory 21.5 34 0.0012 22.7 1.3 36 64-99 11-46 (186)
439 2np5_A Transcriptional regulat 21.2 85 0.0029 21.3 3.3 36 63-98 12-47 (203)
440 2vpr_A Tetracycline resistance 21.0 33 0.0011 24.5 1.2 36 63-98 7-42 (207)
441 1fse_A GERE; helix-turn-helix 20.9 1.3E+02 0.0043 17.3 3.7 42 64-109 14-56 (74)
442 1x3u_A Transcriptional regulat 20.9 1.1E+02 0.0039 17.9 3.5 20 80-99 31-50 (79)
443 2zdj_A Hypothetical protein TT 20.2 34 0.0012 22.3 1.0 15 99-113 22-36 (69)
444 3kz3_A Repressor protein CI; f 20.0 62 0.0021 19.3 2.1 22 81-102 26-47 (80)
No 1
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.97 E-value=7.3e-32 Score=183.09 Aligned_cols=69 Identities=65% Similarity=0.949 Sum_probs=65.6
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhcc-chhhhhhHHHhhhhccceeeccCCceeecC
Q psy8797 54 KGTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDV-QKRRIYDITNVLEGIGILEKKSKNNIQCKR 122 (122)
Q Consensus 54 ~~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v-~kRRiYDI~NVLE~igLI~K~~Kn~~~W~G 122 (122)
..+|+++||++||++||++|.+++++.++|++||+.|+| +|||||||+|||||||||+|.+||.|+|+|
T Consensus 4 ~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G 73 (76)
T 1cf7_A 4 TPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKG 73 (76)
T ss_dssp --CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC-
T ss_pred CCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeC
Confidence 478999999999999999999999999999999999999 999999999999999999999999999998
No 2
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.51 E-value=7.3e-15 Score=103.65 Aligned_cols=65 Identities=28% Similarity=0.447 Sum_probs=46.3
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHh-------------------ccchhhhhhHHHhhhhccceeeccC
Q psy8797 55 GTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESL-------------------DVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 55 ~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L-------------------~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
+.+..++|..++.+..+.+++. +..+.+++|++| ...|||+||++|||+++|||+| .+
T Consensus 5 ~~k~~~GLr~fS~kVcekVk~k--~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k 81 (95)
T 1cf7_B 5 GDKNGKGLRHFSMKVCEKVQRK--GTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EK 81 (95)
T ss_dssp ----CCHHHHHHHHHHHHHHHH--SEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CS
T ss_pred ccccCccHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CC
Confidence 3455666777777666666542 333555555544 3489999999999999999999 79
Q ss_pred CceeecC
Q psy8797 116 NNIQCKR 122 (122)
Q Consensus 116 n~~~W~G 122 (122)
+.|+|+|
T Consensus 82 ~~i~W~g 88 (95)
T 1cf7_B 82 KEIKWIG 88 (95)
T ss_dssp SCEEBCC
T ss_pred CEEEEec
Confidence 9999998
No 3
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.01 Score=38.37 Aligned_cols=44 Identities=16% Similarity=0.428 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhcccee
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILE 111 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~ 111 (122)
++.++++.++ +|.+|+...|.+++|.|--+||+.+=||.=|||.
T Consensus 13 ~~lL~yIr~s-GGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNN-GGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHT-TSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHc-CCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 4567788775 8999999999999999999999999999999986
No 4
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.94 E-value=0.014 Score=38.15 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=46.6
Q ss_pred HHHHHHHhhCC-CCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCceee
Q psy8797 67 KKFVKLLQSSP-QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQC 120 (122)
Q Consensus 67 ~kFi~ll~~sp-~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~W 120 (122)
++.+.++.+.+ +..+...++|+.|++.++-+.-.+.-||.-|+|.+.+.+.=.|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 66778887765 5679999999999999999999999999999999987655666
No 5
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.70 E-value=0.022 Score=37.91 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCC-CCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCceee
Q psy8797 66 TKKFVKLLQSSP-QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQC 120 (122)
Q Consensus 66 t~kFi~ll~~sp-~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~W 120 (122)
-++.++++.+.+ +..+...++|+.|++.++-+.-.+.-|+.-|+|.+.+.+.=.|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 356777776554 6679999999999999999999999999999999886655566
No 6
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.58 E-value=0.028 Score=38.02 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCceeec
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQCK 121 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~W~ 121 (122)
-.-..+.++.+++|.. ++ +...++|++|++.+.-++=.++-||.=|+|.+.+-+--.|.
T Consensus 13 ~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~ 71 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWF 71 (82)
T ss_dssp CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEE
T ss_pred cchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcce
Confidence 3445677889999984 34 99999999999999999999999999999999998888883
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.52 E-value=0.027 Score=35.51 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.-.+.+++|.++ +..+.+.++|+.|++.+--++-+++.|+.-|+|.......|
T Consensus 11 ~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 11 LEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 345678888763 45699999999999999999999999999999987544433
No 8
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.48 E-value=0.092 Score=33.42 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.++++... +.+...++|+.+++.+.-++-.++.|+.-|+|++.
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456666653 45899999999999999999999999999999853
No 9
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=94.11 E-value=0.13 Score=35.25 Aligned_cols=48 Identities=10% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHHhhC-CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 66 TKKFVKLLQSS-PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 66 t~kFi~ll~~s-p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+-+.+.++... +++.+...++|+.+++.++-++.|++.|+..|+|+..
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 33445555544 3678999999999999999999999999999999876
No 10
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.53 E-value=0.12 Score=35.51 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..++..+..+++..+...++|+.+++.+-.+|-.++.|+..|+|.+.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34566666654433899999999999999999999999999999985
No 11
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=93.40 E-value=0.13 Score=34.41 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=40.4
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..+.++...+++.+.+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3555566666678999999999999999999999999999999987
No 12
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.32 E-value=0.15 Score=33.93 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.++...+++.+...++|+.+++.+--++.+++-||.-|+|++.
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 455566666557899999999999999999999999999999986
No 13
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=92.97 E-value=0.15 Score=33.09 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.+.++ ++.+.+.++|+.|++.+--++-.++.|+..|+|.+.. +.|
T Consensus 36 Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y 80 (96)
T 1y0u_A 36 ILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERW 80 (96)
T ss_dssp HHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred HHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEE
Confidence 44555 2458999999999999999999999999999999875 444
No 14
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.97 E-value=0.14 Score=32.59 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..+.++... +.+...++|+.+++.+--+|.+++.|+.-|+|++..
T Consensus 24 ~il~~l~~~--~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLER--GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345555442 348999999999999999999999999999999863
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=92.90 E-value=0.21 Score=31.72 Aligned_cols=45 Identities=4% Similarity=0.069 Sum_probs=37.3
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+.++.. ++.+.+.++|+.|++.+--++-.++.|+..|+|.+...
T Consensus 29 il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 29 ILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 4444433 45689999999999999999999999999999987643
No 16
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.83 E-value=0.16 Score=34.08 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=34.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCC
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKN 116 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn 116 (122)
+.+.+.++|+.|++.+--++-.++.|+..|+|++...+
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 74 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREG 74 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56799999999999999999999999999999866433
No 17
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=92.62 E-value=0.14 Score=32.30 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..++++.+++++.+++.++++.| ++.+=-+|-.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35666665543679999999999 899999999999999999999874
No 18
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=92.13 E-value=0.14 Score=32.63 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=34.0
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
++.+...++|+.+++.+--+|.+++.|+.-|+|++..
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 4558999999999999999999999999999999874
No 19
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=91.33 E-value=0.39 Score=31.39 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+.++.. +.+.+.++|+.+++.+--++-.++.|+.-|+|++..
T Consensus 25 ~IL~~L~~---~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 25 EILTELGR---ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp HHHHHHHH---SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEe
Confidence 34555532 348999999999999999999999999999998753
No 20
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=90.94 E-value=0.38 Score=31.95 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.++..+ ++.+.+.++|+.+++.+=-++.+++.|+.-|+|++.
T Consensus 30 ~il~~L~~~-~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLS-DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHC-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 344455323 256899999999999999999999999999999986
No 21
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=90.81 E-value=0.5 Score=30.45 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=34.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
+.+.+.++|+.+++.+--++--++.|+..|+|++...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 6789999999999999999999999999999987643
No 22
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=90.81 E-value=0.32 Score=32.92 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.++...+++.+...++|+.|++.+=-+.-+++-||.-|+|++.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445555555577999999999999999999999999999999985
No 23
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=90.62 E-value=0.35 Score=31.94 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=36.5
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+.++. ++.+.+.++|+.+++.+--++-.++.|+..|+|.+...
T Consensus 31 IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 31 IMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp HHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 445554 24479999999999999999999999999999987543
No 24
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=90.47 E-value=0.61 Score=30.30 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+.++.+ +...+.++|+.+++.+--++.-++.|+..|+|.+...
T Consensus 28 Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRN 71 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4455543 4589999999999999999999999999999987543
No 25
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=90.24 E-value=0.41 Score=38.52 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=43.9
Q ss_pred HHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccc-eeeccCCcee
Q psy8797 66 TKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGI-LEKKSKNNIQ 119 (122)
Q Consensus 66 t~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igL-I~K~~Kn~~~ 119 (122)
-++.++++.++++..++-.++|+.|+++|.-++.-++.|+..|+ |+.....-|.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~ 59 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHL 59 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEE
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEE
Confidence 35678888776777899999999999999999999999999998 5543333444
No 26
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=90.23 E-value=0.22 Score=33.81 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=33.0
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.++...+++.+...++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 445555555577899999999999999999999999999999987
No 27
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=90.20 E-value=0.56 Score=34.21 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccc-eeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGI-LEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igL-I~K~ 113 (122)
.+.++++.+. +..+...++|+.|+|++|-+|.=++.|+..|+ |...
T Consensus 24 ~~Il~~L~~~-~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~ 70 (187)
T 1j5y_A 24 KSIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT 70 (187)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3466667654 34589999999999999999999999999999 8764
No 28
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=90.02 E-value=0.45 Score=31.22 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=38.2
Q ss_pred HHHHHHHhhC----CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSS----PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~s----p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+..++++.+. .++++++.++|+.|+|+.--+..=++.||.-|+|.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3444555443 3577999999999999888888999999999999887
No 29
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=89.98 E-value=0.71 Score=32.43 Aligned_cols=36 Identities=8% Similarity=0.213 Sum_probs=33.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+.+.++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 458999999999999999999999999999999873
No 30
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=89.88 E-value=0.49 Score=36.74 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
-..+++|..++ ..+.+.++|+.+++.|=-+|-+++.|+..|++++.....|
T Consensus 33 l~IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y 83 (275)
T 3mq0_A 33 VRILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL 83 (275)
T ss_dssp HHHHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE
T ss_pred HHHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE
Confidence 44667777664 5689999999999999999999999999999999764444
No 31
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=89.71 E-value=0.58 Score=31.08 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCcccHHHHHhHh-ccchhhhhhHHHhhhhccceeecc
Q psy8797 78 QGVVDLNVASESL-DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 78 ~~~idL~~aa~~L-~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
++...+.++|+.+ ++.+--++..++.||.-|+|++..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 4668999999999 999999999999999999999874
No 32
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=89.67 E-value=0.38 Score=33.36 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=39.3
Q ss_pred HHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 70 VKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 70 i~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.++..++++.+...++|+.+++.+=-+--+++-||.-|+|++.
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEe
Confidence 44455667888999999999999999999999999999999987
No 33
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=89.57 E-value=0.48 Score=30.50 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=39.8
Q ss_pred CcHHHHHHHH--HHHHhhCCCCcccHHHHHhHhccchhh-hhhHHHhhhhccceee
Q psy8797 60 TSLGLLTKKF--VKLLQSSPQGVVDLNVASESLDVQKRR-IYDITNVLEGIGILEK 112 (122)
Q Consensus 60 kSLg~Lt~kF--i~ll~~sp~~~idL~~aa~~L~v~kRR-iYDI~NVLE~igLI~K 112 (122)
..++.+.+-| +.++...+ ..+.+.++|+.+++.+=- ++-+++-||.-|+|++
T Consensus 9 ~~~g~~~~~l~~L~~l~~~~-~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 9 LQFGHLIRILPTLLEFEKKG-YEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp SBHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEE
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeec
Confidence 3456555444 33344432 258999999999999999 9999999999999983
No 34
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=89.56 E-value=0.66 Score=32.78 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
-+.+.++...+++.+.+.++|+.+++..+-+..|+..|...|+|+-.
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 33444444456678999999999999999999999999999999865
No 35
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=89.41 E-value=0.53 Score=31.42 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCceee
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQC 120 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~W 120 (122)
....+..++|..|. +++.....++|.+||++|+-+==++.-|+.-|.|.+...+--.|
T Consensus 12 ~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W 69 (75)
T 1sfu_A 12 EIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKW 69 (75)
T ss_dssp HHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEE
T ss_pred HHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCc
Confidence 34445566666443 45559999999999999999999999999999999998888888
No 36
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=89.30 E-value=0.59 Score=31.35 Aligned_cols=43 Identities=5% Similarity=-0.016 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhcc
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIG 108 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ig 108 (122)
+..++++++.++....++|+++|+.+++..|.|+-++.-. |+.
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s 50 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETS 50 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCC
Confidence 5678999999998889999999999999999998887653 443
No 37
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=89.25 E-value=0.47 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.++.. ++.+.+.++|+.+++.+--+|-.++.||.-|+|++.
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4444443 346899999999999999999999999999999965
No 38
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=89.17 E-value=0.52 Score=33.89 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.++...+++.+.+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445566667788999999999999999999999999999999986
No 39
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=89.11 E-value=0.7 Score=30.58 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhcc
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIG 108 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ig 108 (122)
+..++++++.++....++++++|+.+++..|.|+-++.-.-|+.
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 56788999999988889999999999999999988877655543
No 40
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=89.05 E-value=0.49 Score=31.08 Aligned_cols=44 Identities=5% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhcc
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIG 108 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ig 108 (122)
+..++++++.++....++++++|+.+++.+|.|+-++.-.-|+.
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 45778888888888889999999999999999998877655543
No 41
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=89.02 E-value=0.68 Score=32.08 Aligned_cols=47 Identities=11% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+-.+.+.+++.. +.+...++|+.+|+++.-+...++-|+.-|+|.+.
T Consensus 6 ~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 345678888764 56899999999999999999999999999999874
No 42
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=88.98 E-value=0.71 Score=30.66 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=32.7
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+...+.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 357999999999999999999999999999997653
No 43
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=88.84 E-value=0.54 Score=31.60 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=32.0
Q ss_pred ccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 81 VDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 46 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 899999999999999999999999999999986
No 44
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=88.80 E-value=0.43 Score=33.19 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.++...+++.+.+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 334444444567899999999999999999999999999999986
No 45
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=88.76 E-value=0.66 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+.+.++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 566899999999999999999999999999999986
No 46
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=88.72 E-value=0.72 Score=31.38 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
+.+.++.. ++.+.+.++|+.|++.+--++-.++.|+..|+|.+...
T Consensus 46 ~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 46 KITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp HHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555553 34589999999999999999999999999999987533
No 47
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=88.59 E-value=0.65 Score=31.05 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..+.++... + +...++|+.+++.+=-+.-+++.||.-|+|++..
T Consensus 42 ~iL~~l~~~--~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSEE--S-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTTC--C-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHhC--C-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 345555543 3 9999999999999999999999999999999863
No 48
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=88.56 E-value=0.99 Score=30.59 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=33.5
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+.+.++|+.|++.+=-+.-+++.||.-|+|.+..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 458999999999999999999999999999999874
No 49
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=88.49 E-value=0.75 Score=31.01 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=35.1
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++.+.+.++|+.|++.+=-++-+++.||.-|+|++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 45678999999999999999999999999999999875
No 50
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=88.33 E-value=0.77 Score=31.81 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
|..+-.+.+.+++. ++.+...++|+.+|+++..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33445678888876 466899999999999999999999999999999864
No 51
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=88.29 E-value=0.7 Score=28.99 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhc----cchhhhhhHHHhhhhccceeecc
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLD----VQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~----v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..++.++.. ++.+...++++.|+ +.+=-+|-+++.|+.-|+|++..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 445666665 45789999999997 56788999999999999999874
No 52
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=88.28 E-value=0.59 Score=30.84 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=32.5
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+...++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 6899999999999999999999999999999986
No 53
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=88.16 E-value=0.75 Score=30.90 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.++..+...+ .+.+.++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 44 ~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 44 RIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHSS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHcCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444455443 6899999999999999999999999999999987
No 54
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.04 E-value=0.62 Score=30.82 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=32.5
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+.++|+.+++.+--++-+++-||.-|+|++.
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 4899999999999999999999999999999986
No 55
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=88.04 E-value=0.68 Score=30.31 Aligned_cols=44 Identities=7% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhcc
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIG 108 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ig 108 (122)
+..+.++++.++....++++++|+.+++..|.|+-++.-.-|+.
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s 46 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYS 46 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 45678888888888889999999999999999988887655543
No 56
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=88.03 E-value=1.1 Score=32.45 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 66 TKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 66 t~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+-+.+.++..+++..+...++|+.+++.+.-+.-|++.|..-|+|+-.
T Consensus 14 Alr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 344555666667788999999999999999999999999999999765
No 57
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=87.93 E-value=0.54 Score=36.13 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=36.6
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCcee
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQ 119 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~ 119 (122)
+.+++.++|+.+++..+.++-+.++|.++|++++...+.|.
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~ 80 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYA 80 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEe
Confidence 56899999999999999999999999999999987655553
No 58
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.91 E-value=0.96 Score=29.62 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
...++++.+ .+.++++++|+.|+|+.=-|---+|.||.-|+|.|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 345667765 567999999999999777777778999999999998
No 59
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=87.88 E-value=0.43 Score=36.82 Aligned_cols=48 Identities=6% Similarity=0.137 Sum_probs=40.8
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCcee
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQ 119 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~ 119 (122)
+++.+. ++.+++.++|+.+++..+.++-+.+.|.++|++++..++.|.
T Consensus 30 lf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~ 77 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYG 77 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEE
T ss_pred hHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEE
Confidence 445554 357999999999999999999999999999999998766654
No 60
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=87.80 E-value=0.88 Score=34.38 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC-Cce
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK-NNI 118 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K-n~~ 118 (122)
..++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++... ..|
T Consensus 10 ~iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y 60 (241)
T 2xrn_A 10 SIMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGF 60 (241)
T ss_dssp HHHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEE
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeE
Confidence 456666654 34689999999999999999999999999999999753 344
No 61
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=87.75 E-value=0.83 Score=30.05 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.++... +.+.+.++|+.+++.+--++-+++-||.-|+|++.
T Consensus 38 iL~~l~~~--~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAKS--GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHS--CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc--CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 44445443 35899999999999999999999999999999986
No 62
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=87.74 E-value=0.87 Score=31.64 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+-.+.+.+++.. +.+...++|+.+|+++--++..++-|+.-|+|.+.
T Consensus 8 ~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 8 NLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 3445778888764 56899999999999999999999999999999874
No 63
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=87.65 E-value=0.67 Score=31.42 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 71 KLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 71 ~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.++...+ +.+.+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 46 ~~l~~~~-~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 46 VLACEQA-EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HHHHHST-TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred HHHHhCC-CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 3343333 34899999999999999999999999999999986
No 64
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=87.64 E-value=0.95 Score=31.86 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
|...-.+.+.+++.. +.+...++|+.+|+++--++..++-|+.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQEN--GRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 344556788888764 45899999999999999999999999999999874
No 65
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.59 E-value=0.78 Score=30.69 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..+..+... ++.+...++|+.+++.+--++-+++-||.-|+|++.
T Consensus 39 ~iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 39 VVLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 344445442 456899999999999999999999999999999986
No 66
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=87.59 E-value=1.1 Score=28.82 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCcccHHHH----HhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVA----SESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~a----a~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+...++ |+.+++.+--++-+++-||.-|+|++.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 355788888 999999999999999999999999985
No 67
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=87.57 E-value=0.75 Score=30.86 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++..+...++ .+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 4455555544 99999999999999999999999999999987
No 68
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.52 E-value=0.99 Score=29.74 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.++.. ++.+...++|+.+++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444 356899999999999999999999999999999985
No 69
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=87.45 E-value=0.66 Score=31.10 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=33.2
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.+.++|+.+++.+--+.-+++-||.-|+|++.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 56899999999999999999999999999999986
No 70
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=87.42 E-value=0.92 Score=30.64 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=35.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceee
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEK 112 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K 112 (122)
++..+... +.+...++|+.+++.+--+.-+++-||.-|+|++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34444444 3489999999999999999999999999999998
No 71
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=87.42 E-value=0.93 Score=34.63 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.+++|... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++...+.|
T Consensus 28 iL~~l~~~-~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y 76 (260)
T 2o0y_A 28 LLELFDAA-HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSY 76 (260)
T ss_dssp HHTTCBTT-BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred HHHHHhhC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeE
Confidence 34444333 45689999999999999999999999999999999754444
No 72
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=87.40 E-value=1.1 Score=33.75 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=40.7
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
+.++++... +..+.+.++|+.+++.+=-+|-+++.|+..|+|++.....|
T Consensus 12 ~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y 61 (249)
T 1mkm_A 12 EILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRY 61 (249)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcE
Confidence 456666654 34689999999999999999999999999999999733334
No 73
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.23 E-value=0.74 Score=35.21 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHH-hhhhccceeeccCC
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITN-VLEGIGILEKKSKN 116 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~N-VLE~igLI~K~~Kn 116 (122)
+..+-++++..+....+..+++.++|+.|++.+..+|+.+. .|...|+|......
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 33445677777666566788999999999999999999999 99999999887554
No 74
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.22 E-value=0.66 Score=31.54 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=38.5
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+.+++. ++.+...++|+.+++++.-++..++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 456677764 345799999999999999999999999999999865
No 75
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=87.13 E-value=1 Score=29.75 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCcccHHHHHhHhc-cchhhhhhHHHhhhhccceeecc
Q psy8797 78 QGVVDLNVASESLD-VQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 78 ~~~idL~~aa~~L~-v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
++.....++++.++ +.+--++..++.||.-|+|++..
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 56789999999995 99999999999999999999874
No 76
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=87.03 E-value=0.93 Score=30.88 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=32.8
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+.+...++|+.+++.+--++-+++-||.-|+|++..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4568999999999999999999999999999999863
No 77
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=87.02 E-value=0.94 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=33.4
Q ss_pred CcccHHHHHhHh-ccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESL-DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L-~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+...++|+.+ ++.+--++.+++.||.-|+|++..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 457999999999 999999999999999999999874
No 78
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.88 E-value=0.8 Score=30.47 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=33.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.+.++|+.+++.+--++-+++-||.-|+|++.
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 45899999999999999999999999999999986
No 79
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=86.80 E-value=1 Score=30.28 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+.++. ++.+.+.++|+.|++.+--++--+++|+..|+|.+..
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~ 65 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHK 65 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 3555555 3567999999999999999999999999999997653
No 80
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.70 E-value=1.1 Score=30.97 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..-.+.+.++.. ++.+...++|+.+++.+--++..++-|+.-|+|.+.
T Consensus 7 ~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 7 DIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 344567777765 356899999999999999999999999999999764
No 81
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=86.67 E-value=0.87 Score=30.34 Aligned_cols=36 Identities=8% Similarity=0.275 Sum_probs=33.5
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+...++|+.+++.+--++-+++-||.-|+|++..
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 458999999999999999999999999999999863
No 82
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.59 E-value=0.83 Score=31.16 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.++...+ .+.+.++|+.+++.+--++-+++.||.-|+|++.
T Consensus 49 iL~~l~~~~--~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 49 AFLYVALFG--PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHC--CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 344444433 5899999999999999999999999999999986
No 83
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.45 E-value=1.1 Score=30.15 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+.++++.+ .+.+++.++|+.|+|+.=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345667765 5779999999999997777777789999999999983
No 84
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=86.45 E-value=0.95 Score=30.33 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.++... +.+.+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 44444443 35899999999999999999999999999999986
No 85
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=86.43 E-value=1.2 Score=30.61 Aligned_cols=36 Identities=6% Similarity=0.148 Sum_probs=32.9
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+...+.++|+.|++.+--++-.++.|+..|+|.+..
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 558999999999999999999999999999998653
No 86
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=86.32 E-value=0.55 Score=37.18 Aligned_cols=41 Identities=10% Similarity=0.322 Sum_probs=37.2
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCc
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNN 117 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~ 117 (122)
+++.+++.++|+++++..+.++-+.++|.++|++++...+.
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~ 108 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDD 108 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTT
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCc
Confidence 45789999999999999999999999999999999876655
No 87
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=86.32 E-value=1.1 Score=29.88 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..++.++.++.+.-++..++|+++++.+.-+-=|+.-||.-|+|.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45667777766667999999999999999999999999999999954
No 88
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=86.25 E-value=0.96 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=33.3
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+...++|+.+++.+--++.+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 358999999999999999999999999999999873
No 89
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.23 E-value=1 Score=29.81 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.++.+...++|+.+++.+--++.+++-||.-|+|++.
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 3556899999999999999999999999999999986
No 90
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=86.23 E-value=1.5 Score=29.70 Aligned_cols=36 Identities=8% Similarity=0.221 Sum_probs=33.6
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+...++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 456899999999999999999999999999999986
No 91
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=86.21 E-value=1 Score=29.17 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCCCC-cccHHHHHhHhccchhhhhhHHHhhhhc
Q psy8797 65 LTKKFVKLLQSSPQG-VVDLNVASESLDVQKRRIYDITNVLEGI 107 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~-~idL~~aa~~L~v~kRRiYDI~NVLE~i 107 (122)
+..++++++.++... .++++++|+.+++..|.|+-++.-.-|+
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGI 46 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 456777888777765 8999999999999999998877665444
No 92
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=86.19 E-value=1 Score=34.87 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
...+.+.++... +.+.+.++|+.|++.+--++-+++.|+..|+|++...
T Consensus 153 ~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 153 EEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 345566666543 3489999999999999999999999999999998743
No 93
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=86.18 E-value=0.9 Score=30.86 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhc
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGI 107 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~i 107 (122)
.+..++++++.++....++++++|+.+++..|.|+-++.-.-|+
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~ 54 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGH 54 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 46788999999998888999999999999999998887655443
No 94
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=86.16 E-value=1 Score=31.19 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=33.1
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..-++..++|+.+++...-+..+++-|+.-|+|++.
T Consensus 49 ~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 49 VLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp CSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334799999999999999999999999999999986
No 95
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=86.13 E-value=1.2 Score=29.66 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=35.8
Q ss_pred HHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 70 VKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 70 i~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+..+... +.+...++|+.+++.+--++-+++-||.-|+|++.
T Consensus 35 L~~l~~~--~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 35 LVRVCEN--PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHC--cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 3444443 35899999999999999999999999999999986
No 96
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=86.09 E-value=0.75 Score=31.12 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.++.. +...+.++|+.|++.+--++-.++.|+..|+|.+.
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 35555553 34678899999999999999999999999999865
No 97
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.98 E-value=1.2 Score=29.92 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=33.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+...++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 35899999999999999999999999999999986
No 98
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=85.72 E-value=0.63 Score=36.36 Aligned_cols=41 Identities=7% Similarity=0.089 Sum_probs=36.4
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.++.+++.++|+++++..+.++-+..+|.++|++++ ..+.|
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y 92 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRF 92 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEE
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEE
Confidence 356899999999999999999999999999999998 45544
No 99
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=85.60 E-value=0.59 Score=35.61 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=35.3
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
++.+++.++|+.+++..+.++-+.++|.+.|++++. .+.|
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y 76 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGY 76 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEE
Confidence 378999999999999999999999999999999874 3444
No 100
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=85.59 E-value=1.1 Score=31.19 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+-.+.+.+++.. +.+...++|+.+|+++--+...++-|+.-|+|.+.
T Consensus 7 ~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 7 EIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHHC--TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3445778888764 56899999999999999999999999999999874
No 101
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=85.19 E-value=1.4 Score=30.08 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=33.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.+.++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999999999999999986
No 102
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=85.18 E-value=1.5 Score=28.61 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCC-CcccHHHHHhHhccchhhhhhHHHhhhhc
Q psy8797 65 LTKKFVKLLQSSPQ-GVVDLNVASESLDVQKRRIYDITNVLEGI 107 (122)
Q Consensus 65 Lt~kFi~ll~~sp~-~~idL~~aa~~L~v~kRRiYDI~NVLE~i 107 (122)
...+.++++.++.. ..++++++|+.++++.|.|.-++.-.-|+
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 47 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGI 47 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCc
Confidence 35678888888887 89999999999999999988877654443
No 103
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=85.18 E-value=0.61 Score=35.76 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=40.1
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC-Cce
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK-NNI 118 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K-n~~ 118 (122)
.+++|..+ ++.+.+.++|+.+++.|=-+|-+++.|+..|++++... ..|
T Consensus 11 IL~~l~~~-~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y 60 (260)
T 3r4k_A 11 LLTYFNHG-RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSY 60 (260)
T ss_dssp HHTTCBTT-BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEE
T ss_pred HHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcE
Confidence 34444443 46789999999999999999999999999999999764 444
No 104
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=85.16 E-value=0.83 Score=35.51 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=37.3
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCC
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKN 116 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn 116 (122)
.++.+. ++.+++.++|+.+++..+.++-+.++|.++|++++...+
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~ 85 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQ 85 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-
T ss_pred hHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCC
Confidence 445553 356899999999999999999999999999999985444
No 105
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=85.09 E-value=0.81 Score=34.83 Aligned_cols=48 Identities=8% Similarity=0.118 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.++++... +..+.+.++|+.+++.|=-+|-+++.|+..|+|++.+ ..|
T Consensus 19 iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y 66 (257)
T 2g7u_A 19 VLLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRW 66 (257)
T ss_dssp HHHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEE
Confidence 34444433 4568999999999999999999999999999999874 444
No 106
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=85.07 E-value=0.89 Score=31.80 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=35.3
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 53 EKGTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 53 ~~~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+...|.+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 21 ~R~~r~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 21 GHMAQNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 33344555666788889999998877789999999999999998883
No 107
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=84.96 E-value=1.2 Score=30.64 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+.+++. ++.+...++|+.+|+.+--+...++.|+.-|+|.+.
T Consensus 6 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 456777764 456899999999999999999999999999999873
No 108
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.82 E-value=1.3 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=32.5
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+...++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 56899999999999999999999999999999987
No 109
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=84.81 E-value=1.6 Score=29.31 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=34.5
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..+.+...++|+.+++.+--+.-+++-||.-|+|++.
T Consensus 47 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 3567899999999999999999999999999999987
No 110
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=84.60 E-value=1.1 Score=31.14 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=42.9
Q ss_pred CCCcCcHHHHHHHH----HHHHhhCCCCcccHHHHHhHh-ccchhhhhhHHHhhhhccceeecc
Q psy8797 56 TRYDTSLGLLTKKF----VKLLQSSPQGVVDLNVASESL-DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 56 ~R~~kSLg~Lt~kF----i~ll~~sp~~~idL~~aa~~L-~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.....|..+..++ +..+. ++.....++++.+ ++.+.-+...++.||.-|+|++..
T Consensus 23 c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 23 CPSREVLKHVTSRWGVLILVALR---DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp CTHHHHHHHHHSHHHHHHHHHGG---GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHHHHHHHHcCCcHHHHHHHHH---cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 33445566666443 22232 4678999999999 799999999999999999999873
No 111
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=84.59 E-value=2.7 Score=27.42 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 63 GLLTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 63 g~Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..+...+...+.. .++..+ ...++|+.|+|++=-+...++.|+.-|+|++..
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 3444555444443 356667 999999999999999999999999999998774
No 112
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=84.33 E-value=1.4 Score=29.86 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=33.5
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.+.+.++|+.+++.+--+.-+++-||.-|+|++.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 345899999999999999999999999999999986
No 113
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.30 E-value=1.8 Score=29.71 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=33.1
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 46899999999999999999999999999999987
No 114
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=84.04 E-value=1.6 Score=29.87 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=33.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+...++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45799999999999999999999999999999987
No 115
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=84.01 E-value=3 Score=27.66 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..+.-..+..+. .+ +...++|..+++.-|.+-.+++.|+.-|+|++..
T Consensus 7 ~eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~ 54 (95)
T 1r7j_A 7 LEIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG 54 (95)
T ss_dssp HHHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC
Confidence 345555566555 33 8899999999999999999999999999999973
No 116
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=84.00 E-value=2.4 Score=29.92 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=39.1
Q ss_pred HHHHHHHHhhCC-CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 66 TKKFVKLLQSSP-QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 66 t~kFi~ll~~sp-~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+-+.+.++...+ +..+.+.++|+.+++.+.-+..|+..|..-|+|+-.
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 344455555444 458999999999999999999999999999999754
No 117
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.96 E-value=1.2 Score=30.01 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=33.1
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.+.++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 46899999999999999999999999999999986
No 118
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=83.76 E-value=1 Score=29.55 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++..++..++|+.|++.+=-+...++.|+.-|+|+..
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445899999999999999999999999999999876
No 119
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=83.61 E-value=0.13 Score=41.63 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=38.7
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCceee
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQC 120 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~W 120 (122)
++.++. .+.....++|+.+++.+-++||+++.|+..|+|.....+...|
T Consensus 24 Y~~Ll~---~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y 72 (342)
T 3qph_A 24 YWTLLV---YGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVY 72 (342)
T ss_dssp SHHHHH---HHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEE
T ss_pred HHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEE
Confidence 445554 2356788899999999999999999999999999875544444
No 120
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=83.57 E-value=1.4 Score=29.48 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=32.8
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+...++|+.+++.+--++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 35899999999999999999999999999999986
No 121
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.57 E-value=1.5 Score=28.97 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=32.6
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+...++|+.+++.+--++-+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 34789999999999999999999999999999986
No 122
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=83.43 E-value=1.9 Score=29.12 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=33.3
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+...++|+.+++.+--+.-+++-||.-|+|++..
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 458999999999999999999999999999999863
No 123
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=83.42 E-value=1.6 Score=29.42 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+...+.+.+.. .|+..+ +..++|+.|+|++=-+-..++.|+.-|+|+...
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 33444444443 456667 899999999999999999999999999998764
No 124
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=82.88 E-value=1.2 Score=29.74 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=33.0
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+...++|+.+++.+--++-+++-||.-|+|++.
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 36899999999999999999999999999999986
No 125
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=82.80 E-value=1.4 Score=30.68 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=32.8
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.+.+.++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 35899999999999999999999999999999985
No 126
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=82.72 E-value=1 Score=31.74 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=43.4
Q ss_pred CCCcCcHHHHHHH----HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 56 TRYDTSLGLLTKK----FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 56 ~R~~kSLg~Lt~k----Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+-....|..+..+ .+..+. ++.....++++.+++.+--+...++.||.-|+|++..
T Consensus 12 c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 12 CPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp CTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3445567776533 233333 4568999999999999999999999999999999874
No 127
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=82.53 E-value=1.6 Score=31.06 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=36.2
Q ss_pred HHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 71 KLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 71 ~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..+.+....-.+.+++|+.+++..+-++.+++-|+.=|+|++.
T Consensus 42 ~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 42 KMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3334444456799999999999999999999999999999884
No 128
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=82.47 E-value=1.5 Score=30.14 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=33.5
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+.+.++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 468999999999999999999999999999999873
No 129
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=82.43 E-value=1.2 Score=34.02 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.+++|... +..+.+.++|+.+++.|=-+|-+++.|+..|++++.+ ..|
T Consensus 26 iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y 73 (265)
T 2ia2_A 26 VIRCFDHR-NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAF 73 (265)
T ss_dssp HHHTCCSS-CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEE
Confidence 44444433 4568999999999999999999999999999999974 444
No 130
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=82.39 E-value=1.9 Score=31.06 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
|..+-.+.+.+++.. +.+...++|+.+++++--+...++-|+.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~~--~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKKD--ARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 344556788888764 46899999999999999999999999999999864
No 131
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=82.34 E-value=1.3 Score=34.23 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=38.5
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.++.+. ++..++.++|+.+++..+.++-+.++|.+.|++++...+.|
T Consensus 44 i~~~l~---~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y 90 (360)
T 1tw3_A 44 LVDHIL---AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEF 90 (360)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeE
Confidence 444453 35689999999999999999999999999999988544444
No 132
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=82.05 E-value=3.4 Score=28.32 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=32.8
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+...++|+.|++.+=-+..+++.||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 447889999999999999999999999999999874
No 133
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=81.68 E-value=1.4 Score=34.35 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
++.+++.++|+.+++..+.++-+..+|.++|++++..
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 98 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED 98 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC
Confidence 4679999999999999999999999999999999864
No 134
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=81.61 E-value=2.1 Score=29.78 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=35.4
Q ss_pred CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 76 SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 76 sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.|+..+ +..++|+.|+|++=-+-..++.|+.-|+|+....
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 366677 8999999999999999999999999999987643
No 135
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=81.55 E-value=2.4 Score=29.96 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=34.8
Q ss_pred CCcccHHHHHhHh-ccchhhhhhHHHhhhhccceeecc
Q psy8797 78 QGVVDLNVASESL-DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 78 ~~~idL~~aa~~L-~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+.....++++.+ ++...-|...+..||.-|||+|..
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 5678999999999 999999999999999999999874
No 136
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=81.48 E-value=1.9 Score=30.29 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=32.5
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+.++|+.+++.+=-++-+++-||.-|+|++.
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 4899999999999999999999999999999986
No 137
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=81.36 E-value=1.5 Score=31.38 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCC
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKN 116 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn 116 (122)
+.+.++. .+.+.+.++|+.|++.+=-++--+++|+..|+|++....
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~G 107 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDG 107 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3455554 355899999999999999999999999999999876433
No 138
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=81.13 E-value=1.4 Score=32.18 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=33.7
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+....+.++|+.|++.+--++..++.||.-|+|.+...
T Consensus 21 ~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~~ 59 (196)
T 3k2z_A 21 NGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNG 59 (196)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC--
T ss_pred hCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecCC
Confidence 355689999999999998899999999999999998643
No 139
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=80.89 E-value=6.1 Score=25.93 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchh-hhhhHHHhhhhccceeeccCCceee
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKR-RIYDITNVLEGIGILEKKSKNNIQC 120 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kR-RiYDI~NVLE~igLI~K~~Kn~~~W 120 (122)
..-.+.+.++.... .....++|+.|++.+= -+=-..+.||.=|+|++.+.+.-.|
T Consensus 11 ~~~~~IL~~Lk~~g--~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w 66 (79)
T 1xmk_A 11 EIKEKICDYLFNVS--DSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIW 66 (79)
T ss_dssp HHHHHHHHHHHHTC--CEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEE
T ss_pred hHHHHHHHHHHHcC--CcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCe
Confidence 45678889988754 5789999999999764 6666777899999999887666677
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=80.66 E-value=2.2 Score=30.83 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
|..+-.+++.+++.. +.+...++|+.+|+...-+..-++-|+.-|+|++.
T Consensus 25 ld~~d~~IL~~L~~~--~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 445567888888864 56899999999999999999999999999999874
No 141
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=79.49 E-value=3.3 Score=27.39 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceee
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEK 112 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K 112 (122)
+-..|+++++. ..++.|+++|..+++..=-.-|=++-||.-|.+.=
T Consensus 8 ll~~Fi~yIk~--~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltG 53 (72)
T 1wi9_A 8 FLTEFINYIKK--SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTG 53 (72)
T ss_dssp HHHHHHHHHHH--CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHH--cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEE
Confidence 34899999997 46799999999999977666677778888776653
No 142
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=79.21 E-value=1.4 Score=31.31 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
|....+++|.+..-.-+.++++|+..||.+.-||
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y 68 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIY 68 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhHHH
Confidence 6677888888776677999999999999998888
No 143
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=78.85 E-value=2.1 Score=28.69 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=40.3
Q ss_pred cCcHHHHHHH----HHHHHhhCCCCccc--HHHHHhHh-ccchhhhhhHHHhhhhccceeecc
Q psy8797 59 DTSLGLLTKK----FVKLLQSSPQGVVD--LNVASESL-DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 59 ~kSLg~Lt~k----Fi~ll~~sp~~~id--L~~aa~~L-~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
...|..+..+ .+..+. ++... ..++++.+ ++...-+...+..||.-|+|++..
T Consensus 18 ~~~l~~l~~~wrl~IL~~L~---~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 77 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVLG---NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRS 77 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHHT---SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCccHHHHHHHHh---cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEee
Confidence 4456666533 233333 34445 99999999 999999999999999999999874
No 144
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=78.76 E-value=2.2 Score=28.05 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhc----cchhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLD----VQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~----v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++.++.. ++.+...++|+.++ +.+=-+|-+++.|+.-|+|++..
T Consensus 14 ~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 14 EVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 34555554 34589999999999 67999999999999999999873
No 145
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=78.72 E-value=3 Score=22.36 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=23.5
Q ss_pred ccHHHHHhHhccchhhhhhHHHhhhhcc
Q psy8797 81 VDLNVASESLDVQKRRIYDITNVLEGIG 108 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~NVLE~ig 108 (122)
+...++|+.|++.+.-+|.+++-.+.-|
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 5899999999999999999987665443
No 146
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=78.64 E-value=2 Score=33.79 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=38.4
Q ss_pred HHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 70 VKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 70 i~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.+.+..+ ++.+++.++|+++++..+.++-+.+.|.++|++++. .+.|
T Consensus 41 fd~L~~~-~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-~~~y 87 (363)
T 3dp7_A 41 FQLLSGK-REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRY 87 (363)
T ss_dssp HHHHHTC-TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEE
T ss_pred HHHHHhc-CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-CCEE
Confidence 3444432 468999999999999999999999999999999875 4444
No 147
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=78.45 E-value=2.8 Score=29.63 Aligned_cols=46 Identities=11% Similarity=0.330 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 66 TKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 66 t~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
-++.+.+++. ++.+...++|+.+|++.--+..-++-|+.-|+|.+.
T Consensus 5 d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 3567777775 567899999999999999999999999999999864
No 148
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=78.21 E-value=3 Score=28.77 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
+...+.+.+.. .|+..+ +..++|+.|+|++=-+-..++.|+.-|+|.....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 33444444443 356777 9999999999999999999999999999987643
No 149
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=78.20 E-value=5.7 Score=27.69 Aligned_cols=47 Identities=11% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+-+.+.++-..++ . .+.++|+.+++..+-+..|+.-|...|+|+-.
T Consensus 10 yAl~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 10 VAIHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 34444555555555 3 99999999999999999999999999999755
No 150
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=78.07 E-value=3.4 Score=28.61 Aligned_cols=52 Identities=8% Similarity=0.161 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHh--ccchhhhhhHHHhhhhccceeeccCC
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESL--DVQKRRIYDITNVLEGIGILEKKSKN 116 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L--~v~kRRiYDI~NVLE~igLI~K~~Kn 116 (122)
...-.+.++++.. ++.+...++|+.+ ++.+=.+-.-+++|+.-|||++....
T Consensus 12 d~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 12 TIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred CHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 3344778888875 3478999999999 99999999999999999999987554
No 151
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=77.97 E-value=1.9 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 77 PQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 77 p~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+++.+ ...++|+.|+|++=-+-+.++.|+.-|+|++..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 55556 999999999999999999999999999998764
No 152
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=77.24 E-value=3.5 Score=29.91 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=38.5
Q ss_pred HHHHHHHHhhC-CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 66 TKKFVKLLQSS-PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 66 t~kFi~ll~~s-p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+-+.+-++-.. +++.+...++|+.+++...-+..|+..|..-|+|+-.
T Consensus 29 Alr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 29 GLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 33444444433 4568999999999999999999999999999999755
No 153
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=77.24 E-value=3 Score=30.93 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHH
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~N 102 (122)
+..+|++++.++....++|+++|+.++++++.|..+..
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56889999999999999999999999999999998875
No 154
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=77.23 E-value=4.2 Score=28.10 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++++.++++..++.+++.+.| ++.+=-+|-.++.|+..|+|.+..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5677776654678999999999 788999999999999999999874
No 155
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=77.14 E-value=1.9 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=33.0
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.+.+.++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 49 IEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 456899999999999999999999999999999973
No 156
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=77.11 E-value=3.1 Score=32.10 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 70 VKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 70 i~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+..+..++++.+...++|+.+++.+=.+--+++-||.-|+|+|.
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 34444455456899999999999999999999999999999987
No 157
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=76.83 E-value=2.5 Score=32.52 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=34.7
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.+++.++|+++++..+.++-+..+|.++|++++.. +.|
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y 93 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAF 93 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Cee
Confidence 79999999999999999999999999999999875 444
No 158
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=76.81 E-value=3.6 Score=28.12 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=36.5
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 55 GTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 55 ~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..|.+..=..|..-.++++.+.+-.-+.++++|+..||.+.-||-
T Consensus 12 ~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 12 GRRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 344455566788889999988777789999999999999998883
No 159
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=76.58 E-value=4.7 Score=27.64 Aligned_cols=46 Identities=11% Similarity=0.258 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeeccC
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.++++.++ +..++.+++.+.| ++.+=-+|-.++.|+..|+|.+..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 66777665 5678999999999 7899999999999999999998743
No 160
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=76.35 E-value=2.5 Score=34.00 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++..+...+++.+.+.++|+.+++.+=.+-=+++-||.-|+|+|.
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 444455555678999999999999999999999999999999986
No 161
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=75.99 E-value=1.9 Score=26.51 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHH
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..+++.++|+.|++++.-||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 35689999999999999999999987
No 162
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=75.23 E-value=2.5 Score=27.16 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhcccee
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILE 111 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~ 111 (122)
++..+.+.++|+.+++.+=-++-+++.||.-|+|.
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 34458999999999999999999999999999993
No 163
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=75.00 E-value=5 Score=27.43 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhc----cchhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLD----VQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~----v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++.++... ++.+...++++.|+ +.+=-+|-+++-||.-|+|.+..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666653 35689999999998 78899999999999999999874
No 164
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=74.89 E-value=2.7 Score=32.74 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=35.5
Q ss_pred HHHHhhCCCCcccHHHHHhHhcc---chhhhhhHHHhhhhccceeec
Q psy8797 70 VKLLQSSPQGVVDLNVASESLDV---QKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 70 i~ll~~sp~~~idL~~aa~~L~v---~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.+... ++.+++.++|+.+++ ..+.++-+.++|.++|++++.
T Consensus 42 f~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 42 PNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp HHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 3444432 347899999999999 588999999999999999886
No 165
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=74.76 E-value=3.9 Score=30.71 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=40.4
Q ss_pred HHHHHHHHHhh---CCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 65 LTKKFVKLLQS---SPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+...+.+.+.. .|+..+...++|+.|||++=-+-+.++.|+.-|+|+..
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 33444444433 47888899999999999999999999999999999987
No 166
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=74.76 E-value=4.3 Score=32.11 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhcccee
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILE 111 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~ 111 (122)
.+.++++. .++.++..++|+.|+|+++-||--++.|+..|++.
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 44666674 46679999999999999999999999999999875
No 167
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=74.58 E-value=3.4 Score=32.43 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=31.8
Q ss_pred cccHHHHHhHhcc------chhhhhhHHHhhhhccceeec
Q psy8797 80 VVDLNVASESLDV------QKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 80 ~idL~~aa~~L~v------~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+++.++|+.+++ ..+.++-+.++|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3899999999999 789999999999999999886
No 168
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=74.45 E-value=3.2 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=34.7
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 54 KGTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 54 ~~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
...|...+=..|..-.++++.+..-.-+.++++|+.+||.+.-||-
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred cccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 3445556667788888999988766679999999999999988884
No 169
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=73.56 E-value=4 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 76 SPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 76 sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.|+..+.-.++|+.|||+|=-+=+.+..|+.-|+|+..
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~ 68 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV 68 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 47888899999999999999999999999999999865
No 170
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=73.22 E-value=4 Score=27.84 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+.+..=..|..-+++++.+.+-.-+.++++|+..||.+.-||
T Consensus 28 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 28 TGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 344445667888999999887778999999999999999998
No 171
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=73.08 E-value=12 Score=25.54 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+...+.+.+.. .|+..+ +..++|+.|+|++=-+-..++.|+.-|+|++..
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 44555555543 356667 599999999999999999999999999998763
No 172
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=71.90 E-value=5.7 Score=29.35 Aligned_cols=44 Identities=30% Similarity=0.435 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+.++. ++.+...++|+.+++.+--++-.++.|+.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44666665 256899999999999999999999999999999886
No 173
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=71.78 E-value=2.5 Score=31.32 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCcccHHHHHhHhccchhhhhhHHH
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~N 102 (122)
+..+.+.++|+.|+|.+.++|+.++
T Consensus 29 ~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp SCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CceEcHHHHHHHhCCCHHHHHHHHH
Confidence 4789999999999999999999875
No 174
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=71.70 E-value=4.5 Score=27.91 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=29.2
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.+...++|+.+++.+=-+--+++-||.-|+|++.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 357899999999999999999999999999999554
No 175
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=71.59 E-value=5.4 Score=29.18 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=35.4
Q ss_pred CCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 76 SPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 76 sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.|+..+.-.++|+.|||+|=-+=+.+..|+.-|+|+..
T Consensus 35 ~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 35 VPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 47888999999999999999999999999999999865
No 176
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=71.49 E-value=5.2 Score=29.57 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=35.2
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 55 GTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 55 ~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..|...+-..+..--++++.+..-.-+.+.++|+++||.+--||
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY 67 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLY 67 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHH
Confidence 34456666778889999998877678999999999999999998
No 177
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=71.32 E-value=4.2 Score=27.33 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=35.1
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccc----hhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQ----KRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~----kRRiYDI~NVLE~igLI~K~~ 114 (122)
++.++.+ .+.+...++++.|+.. +=-+|-+++-||.-|+|++..
T Consensus 40 VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 4455554 3468999999999864 568999999999999999874
No 178
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=71.12 E-value=4.8 Score=29.50 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 67 KKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 67 ~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
....+.+.+ .|+..+ +-.++|+.|||+|=-+=+.++.|+.-|+|+..
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~ 64 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ 64 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 334444433 467888 79999999999999999999999999999876
No 179
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=70.85 E-value=2.6 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
|.+..=..|..-.+++|.+.+-.-+.++++|++.||.+.-||-
T Consensus 40 r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 40 RSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 3344445677888899988777789999999999999998883
No 180
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=70.70 E-value=7.6 Score=28.49 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=40.2
Q ss_pred HHHHHhhCCCCcccHHHHHhHhc-cchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLD-VQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~-v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.++..+|.+..++.++++.++ +.+=-||--++.|+..|+|++.
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~ 79 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKI 79 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEe
Confidence 45666777888899999999999 9999999999999999999976
No 181
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=70.22 E-value=5.6 Score=31.43 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCcccHHHHHhHhcc--chh---hhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDV--QKR---RIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v--~kR---RiYDI~NVLE~igLI~K~ 113 (122)
..+.+.+++++.+++.++|+++++ ..+ .++-|..+|.++|+++..
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 455666655578999999999998 777 899999999999999886
No 182
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=70.03 E-value=6.6 Score=29.11 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=35.5
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++.+...++|+.|++.+=-+-.+++-||.-|+|++..
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~ 54 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec
Confidence 46789999999999999999999999999999999885
No 183
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=69.90 E-value=6 Score=31.15 Aligned_cols=44 Identities=11% Similarity=0.235 Sum_probs=37.0
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.++.+.+. .+.+++.++|+.+++..+.++-+..+|.++|+++..
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 76 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVE 76 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34555544 467899999999999999999999999999999764
No 184
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=69.74 E-value=4.9 Score=29.43 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=33.3
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+.+...++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 358999999999999999999999999999999873
No 185
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=69.55 E-value=6.7 Score=26.59 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=35.0
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+.+..-..+....++++.+..-.-+.++++|+..||.+.-||
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVK 54 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHh
Confidence 445555678888999998877778999999999999998888
No 186
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=69.39 E-value=4.6 Score=30.12 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhc
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGI 107 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~i 107 (122)
+..++++++.++.+..++|+++|+.+++++|.|.-++.-.-|+
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g~ 46 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGH 46 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 5678899999999999999999999999999888776654443
No 187
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=69.04 E-value=5.9 Score=29.62 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=35.9
Q ss_pred CCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 76 SPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 76 sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.|+..+.-.++|+.|||+|=-+=+.+..|+.-|+|+...
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 478888999999999999999999999999999998763
No 188
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=68.98 E-value=4.6 Score=29.91 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=34.0
Q ss_pred CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceee
Q psy8797 76 SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEK 112 (122)
Q Consensus 76 sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K 112 (122)
.|+..+ .-.++|+.|||+|==+=+.+..|+.-|+|+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 377788 5789999999999999999999999999997
No 189
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=68.18 E-value=6 Score=27.14 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+...+.+.+.+ .|+..+ +..++|+.|+|+|=-+-..++.|+.-|+|+..
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 44444444443 467777 89999999999999999999999999999765
No 190
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=68.08 E-value=3.9 Score=31.84 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=36.3
Q ss_pred HHHHHhhCCCCcccHHHHHhHhcc---chhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDV---QKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v---~kRRiYDI~NVLE~igLI~K~ 113 (122)
.++.+... ++.+++.++|+.+++ ..+.++-+..+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 34445443 347899999999999 689999999999999999886
No 191
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=67.88 E-value=9.4 Score=26.33 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 71 KLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 71 ~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.++...++ .+...++|+.+++.+=-+--+++-||.-|+|++.
T Consensus 38 ~~L~~~~~-~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 38 YNINRLPP-EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp HHHHHSCT-TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCC-CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 33444333 3567899999999999999999999999999986
No 192
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=67.78 E-value=6.5 Score=29.13 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 56 TRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 56 ~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.|...+-..+..-.++++.+..-.-+++.++|+++||.+--||=
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~ 58 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYV 58 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred CCcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHH
Confidence 34455667788889999988776789999999999999998883
No 193
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=67.27 E-value=8 Score=29.71 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++..+...+++.+...++|+.|++.+=-+--+++-||.-|+|+|.
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 344455544567899999999999999999999999999999987
No 194
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=66.86 E-value=3.4 Score=26.46 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=23.2
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHh
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNV 103 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NV 103 (122)
...+.+++||+-|++.+..+|..++-
T Consensus 14 K~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SSEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred cceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 35789999999999999999999864
No 195
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=66.72 E-value=13 Score=25.89 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeeccC
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.++++.++ +..++..++.+.| ++..=-+|-.++.|+..|+|.+..-
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 56667664 5578999999999 7889999999999999999998754
No 196
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=65.55 E-value=11 Score=25.50 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCc
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNN 117 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~ 117 (122)
..+..+...+.+++..+ +.+++.++-+.||++|+..-=|..-|..+|+..|++-.+
T Consensus 62 ~~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R 117 (121)
T 2pjp_A 62 DRIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDH 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEe
Confidence 34555666677777654 679999999999999999999999999999999885443
No 197
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=64.93 E-value=5.9 Score=21.57 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=20.4
Q ss_pred ccHHHHHhHhccchhhhhhHHHh
Q psy8797 81 VDLNVASESLDVQKRRIYDITNV 103 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~NV 103 (122)
..+.++|+.|+|.+.-||.+++-
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 78999999999999999987653
No 198
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=64.19 E-value=7.7 Score=27.35 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+++|.++++..++.+++.+.| ++..==+|-.++.|+..|+|.+..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5666765543678999999998 688889999999999999999874
No 199
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=64.00 E-value=1.9 Score=29.65 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=35.9
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 55 GTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 55 ~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..|.+..-..|..-.+++|.+..-.-+.++++|++.||.+.-||
T Consensus 14 ~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 57 (216)
T 3qqa_A 14 SQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIY 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSS
T ss_pred CcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHH
Confidence 34555556678888899998887778999999999999888877
No 200
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=63.93 E-value=6.9 Score=27.09 Aligned_cols=41 Identities=7% Similarity=0.005 Sum_probs=33.1
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
|.+..=..|....+++|.+.. .-+.++++|+..||.+.-||
T Consensus 17 ~~~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY 57 (215)
T 2hku_A 17 SGRQTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVT 57 (215)
T ss_dssp ---CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHH
Confidence 344455567788889998888 99999999999999999998
No 201
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.86 E-value=13 Score=25.71 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=32.4
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|..||+.+.-+.-+.+-|+.-|+|+...
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 56899999999999999999999999999998763
No 202
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=63.76 E-value=3 Score=30.05 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=33.4
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||
T Consensus 44 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y 84 (245)
T 3aqt_A 44 REQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFY 84 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHH
Confidence 44444557777889998876678999999999999998888
No 203
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=63.71 E-value=9.3 Score=30.88 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=32.8
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCC
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKN 116 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn 116 (122)
..+.++++++.++++++-+.-.++-|+..|+|++.+..
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~g 347 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG 347 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 35788999999999999999999999999999987543
No 204
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=63.25 E-value=13 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=32.5
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+...++|..+|+.+.-+.-+.+-|+.-|+|+...+
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~ 213 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGR 213 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 456799999999999999999999999999988643
No 205
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=63.18 E-value=5.2 Score=27.23 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=34.5
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
|.+..=..|..-.++++.+.+-.-+.++++|+..||.+.-||-
T Consensus 23 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 65 (217)
T 3mvp_A 23 RSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYA 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHH
Confidence 3344455677888899888766789999999999999999984
No 206
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=63.07 E-value=12 Score=26.34 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=33.1
Q ss_pred ccHHHHHhHhccchhhhhhHHHhhhhccceeeccCC
Q psy8797 81 VDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKN 116 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn 116 (122)
+...++|..||+.+.-+.=+++-|+.-|+|+...+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 688999999999999999999999999999987544
No 207
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=63.04 E-value=19 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHhhCCCCcccHHHHHhHhc-----cchhhhhhHHHhhhhc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLD-----VQKRRIYDITNVLEGI 107 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~-----v~kRRiYDI~NVLE~i 107 (122)
.+..|++.....=.+..+|.+|+ =.+.||||.++.++..
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 56667765444446777999995 2789999999998764
No 208
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=62.94 E-value=12 Score=24.86 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=33.8
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..-..+..-.++++.+.+-..+.++++|++.||.+.-||
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLF 47 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHH
Confidence 3344567888999999887778999999999999999998
No 209
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=62.92 E-value=11 Score=24.64 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=37.0
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhcc----chhhhhhHHHhhhhccceeecc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDV----QKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v----~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++.++... +.+...++|+.|+. .+=-++-+++-||.-|+|++..
T Consensus 14 ~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 456666654 35899999999974 7889999999999999999864
No 210
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=62.92 E-value=11 Score=25.31 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.=..|....++++.+.+-.-++++++|+..||.+.-||=
T Consensus 18 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 18 RKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 344577778889988877789999999999999998883
No 211
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=62.56 E-value=7 Score=26.78 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.=..|..-.+++|.+..-.-++++++|+..||.+.-||-
T Consensus 18 ~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 56 (218)
T 3gzi_A 18 NRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRY 56 (218)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHH
Confidence 445567778888888776789999999999999999884
No 212
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=62.50 E-value=12 Score=26.03 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++++.+++ +.++.+++.+.| ++.+==+|-.++.|+..|+|.+..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567777654 578999999988 588899999999999999999874
No 213
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=62.37 E-value=11 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=33.0
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+...++|..||+.+.-+.=+++-|+.-|+|+...+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~ 212 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKN 212 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCC
Confidence 568899999999999999999999999999998743
No 214
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=62.31 E-value=18 Score=27.19 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+...+.+.+.+ .|+..+ +..++|+.++|+|=-+-..++.|+.-|+|.+.
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 34445555544 366677 89999999999999999999999999999875
No 215
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=62.25 E-value=6 Score=27.59 Aligned_cols=38 Identities=11% Similarity=0.221 Sum_probs=33.4
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.+...++|..||+.+.-++=+.+-|+.-|+|+.. .+.+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i 206 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKI 206 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEE
Confidence 5678999999999999999999999999999876 4433
No 216
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.07 E-value=15 Score=25.86 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++++.++ +..++..++.+.| ++..==+|-.++.|+..|+|.+..
T Consensus 32 IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 56667665 4578999999988 688899999999999999999874
No 217
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=61.91 E-value=17 Score=27.22 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=39.4
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+...+.+.+.+ .|+..+ +-.++|+.++|+|=-+-..++.|+.-|+|.+.
T Consensus 14 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 14 IASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp HHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45556666654 456677 89999999999999999999999999999886
No 218
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=61.84 E-value=2.4 Score=29.93 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceee
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEK 112 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K 112 (122)
+-.+.+..+. +++.+...++|+.||+++--+.+.++.|+.-|+|+.
T Consensus 14 l~~~Il~~l~--~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 14 IDRNILNELQ--KDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHH--HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHH--hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4456666555 466679999999999999999999999999999985
No 219
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=61.77 E-value=13 Score=25.14 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 9 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 46 (195)
T 2dg7_A 9 EQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFR 46 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHH
Confidence 34567778889988776779999999999999999984
No 220
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=61.66 E-value=11 Score=30.55 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=36.6
Q ss_pred CCCcCcHHHHH------HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceee
Q psy8797 56 TRYDTSLGLLT------KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEK 112 (122)
Q Consensus 56 ~R~~kSLg~Lt------~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K 112 (122)
.|-=.-||.++ ...++++....++.++++++++..++. .-||+..|+.+|++.-
T Consensus 184 EkPLSDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 184 EKPLSDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 34345577765 336667766667789999999999985 4799999999999964
No 221
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=61.34 E-value=6.3 Score=26.80 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=33.9
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
|.+..-..|..-.++++.+.+-.-++++++|+..||.+.-||
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 52 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFY 52 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHH
Confidence 444455667788888888877778999999999999999888
No 222
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=60.72 E-value=2.7 Score=28.90 Aligned_cols=50 Identities=8% Similarity=0.187 Sum_probs=38.7
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+...+.+.+.. .|+..+ +..++|+.|+|++=-+-..++.|+.-|+|....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 69 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKR 69 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEc
Confidence 34444444433 356677 899999999999999999999999999998764
No 223
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=60.70 E-value=15 Score=26.89 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=35.2
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 56 TRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 56 ~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+...+-..+..-.++++.+..-.-+++.++|+.+||.+--||-
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 34455667788999999998877789999999999999998883
No 224
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=60.32 E-value=11 Score=25.61 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=35.3
Q ss_pred CCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 76 SPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 76 sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+|++.+.+.++|+.+++.+=.+-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 47788999999999999999999999999999999975
No 225
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.22 E-value=12 Score=27.82 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHHHHH-HhhCCCCcccHHHHHhHhccchhhhhhHHHh-hhhccceeeccCC
Q psy8797 64 LLTKKFVKL-LQSSPQGVVDLNVASESLDVQKRRIYDITNV-LEGIGILEKKSKN 116 (122)
Q Consensus 64 ~Lt~kFi~l-l~~sp~~~idL~~aa~~L~v~kRRiYDI~NV-LE~igLI~K~~Kn 116 (122)
..-+.++.. +....+..+++..+|+.||+.+.-+|..+.- +...|+|.+....
T Consensus 247 ~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g 301 (324)
T 1hqc_A 247 KRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRG 301 (324)
T ss_dssp HHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTE
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCcc
Confidence 333445544 4454566789999999999999999995554 7778999876543
No 226
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=60.14 E-value=7 Score=28.10 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=32.8
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..=..+..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 21 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 21 KQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 333444566778888887766679999999999999998884
No 227
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=59.68 E-value=7.6 Score=27.54 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=34.1
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 42 ~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~ 83 (236)
T 3q0w_A 42 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 83 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHH
Confidence 344445677888899988776789999999999999998884
No 228
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=59.24 E-value=9.5 Score=28.90 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 76 SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 76 sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.|+..+ +-.++|+.++|+|=-+=..++.|+.-|+|.+.++..|
T Consensus 31 ~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~Gt~ 74 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTV 74 (248)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEE
Confidence 356666 8999999999999999999999999999999555543
No 229
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=59.18 E-value=13 Score=25.29 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
=..+...+++++.+.+=.-+.++++|++.||.+.-||
T Consensus 15 r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 15 QKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 3457778899998877677999999999999999988
No 230
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=59.18 E-value=13 Score=24.54 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+..-.++++.+.+-.-+.++++|+..||.+.-||
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 11 EQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 456777889999887778999999999999999998
No 231
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=58.88 E-value=14 Score=27.60 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=36.5
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+.++.. +.....++|+.+++..--+|-.++.|+.-|+|++..
T Consensus 20 IL~~L~~---~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 20 ILFLLTK---RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 4555543 458999999999999999999999999999998853
No 232
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=58.32 E-value=5 Score=26.68 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..-..+..-+++++.+.+=..+.++++|+..||.+.-||
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHH
Confidence 344456777889998877778999999999999999888
No 233
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=58.18 E-value=9.9 Score=27.27 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHH-HHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccce
Q psy8797 65 LTKKF-VKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGIL 110 (122)
Q Consensus 65 Lt~kF-i~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI 110 (122)
..+|+ +.++-++ +.-++..+.+..|..||-+.|.+..|..+|+.
T Consensus 19 F~RRLyla~lId~--~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~ 63 (117)
T 3ke2_A 19 FLRKLYLAHLMDD--ARHNLLSLGKLTGMPRRTLQDAIASFADIGIE 63 (117)
T ss_dssp HHHHHHHHHHHHH--SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCE
T ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeE
Confidence 34453 3344444 33499999999999999999999999999975
No 234
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=58.00 E-value=6.9 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.+.+.++|+.|++.+=-+.-.++-||..||+.|.
T Consensus 25 ~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 25 RAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 456789999999999999999999999999999987
No 235
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=57.72 E-value=14 Score=25.18 Aligned_cols=36 Identities=6% Similarity=0.157 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+...+++++.+..-.-+.++++|++.||.|.-||-
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 8 MILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 467778899988877789999999999999998883
No 236
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=57.51 E-value=33 Score=25.02 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=32.6
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+...++|..||+.+.-+.-+++-|+.-|+|+...+
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~ 252 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 252 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCC
Confidence 467899999999999999999999999999998643
No 237
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=57.35 E-value=12 Score=24.94 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=33.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..=..+..-.++++.+.+-.-+.++++|+..||.+.-||
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 46 (183)
T 1zk8_A 7 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHH
Confidence 3445567788889998876678999999999999998888
No 238
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=57.28 E-value=24 Score=26.29 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 66 TKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 66 t~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
...+.+.+.+ .|+..+ ...++|+.++|+|=-+-..++.|+.-|+|.+.
T Consensus 11 ~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 11 ATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp HHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 3444444433 456777 89999999999999999999999999999876
No 239
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=57.26 E-value=8.8 Score=26.01 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
+-++.+..+.. .+.++.++|+.+++...-+-++...|...|.+.+...+.|
T Consensus 8 l~~~i~~~~~~---~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~ 58 (121)
T 2pjp_A 8 IWQKAEPLFGD---EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRY 58 (121)
T ss_dssp HHHHHGGGCSS---SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCce
Confidence 33445555543 4568999999999999999999999999999999877755
No 240
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=57.22 E-value=20 Score=20.75 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeec
Q psy8797 71 KLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 71 ~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.++.. ++.++..++++.| +|..+-||-.++ .+|++ +.
T Consensus 12 ~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 44443 4578999999999 999999997777 56777 54
No 241
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=56.96 E-value=35 Score=23.35 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=32.7
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+...++|..||+.+.-+.=+.+-|+.-|+|+...+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 202 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 202 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCC
Confidence 467899999999999999999999999999998743
No 242
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=56.91 E-value=16 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
=..+...+++++.+.+-..+.++++|+..||.+.-||
T Consensus 14 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 14 RNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 3457778899998887778999999999999998888
No 243
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=56.40 E-value=24 Score=26.88 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=50.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCcee
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQ 119 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~ 119 (122)
...-..+..+....|...+=.+-++.++++.+++....+-++.+.|...|.|.+...+.|.
T Consensus 136 ~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~ 196 (258)
T 1lva_A 136 SETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 196 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEE
Confidence 3344557788888887665556689999999999999999999999999999999888663
No 244
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=56.16 E-value=12 Score=28.73 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=37.4
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCcee
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQ 119 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~ 119 (122)
++..+..++|+.+++..+-+-..++-|...|+|++...+.+.
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~ 217 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVV 217 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEE
Confidence 467889999999999999999999999999999988666553
No 245
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=55.74 E-value=18 Score=26.18 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=34.4
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhc--------------cchhhhhhHHHhhhhccceeecc
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLD--------------VQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~--------------v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..+.+.+...+.+. .++|+.++ +++=-+-.++..||..|+|++..
T Consensus 57 ~~lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 57 SILRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HHHHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 33444454444443 99999999 87777999999999999999863
No 246
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=55.68 E-value=42 Score=22.23 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHh-ccchhhhhhHHHhhhhcccee
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESL-DVQKRRIYDITNVLEGIGILE 111 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L-~v~kRRiYDI~NVLE~igLI~ 111 (122)
.....+..+|+++|+..|+++-|= +++..+ ++..=-.-+++|.|-+-|-|+
T Consensus 10 ~~~~~ie~~IL~l~~~~P~GItd~-~L~~~~p~~~~~~r~~aIN~LL~~gkie 61 (81)
T 2dk8_A 10 ADPVEIENRIIELCHQFPHGITDQ-VIQNEMPHIEAQQRAVAINRLLSMGQLD 61 (81)
T ss_dssp SCHHHHHHHHHHHHHHCSSCEEHH-HHHHHCTTSCHHHHHHHHHHHHHHTSEE
T ss_pred ccHHHHHHHHHHHHHhCCCCCCHH-HHHHHCCCCCHHHHHHHHHHHHHcCCeE
Confidence 335678889999999999887553 455555 345555678999998877765
No 247
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=55.09 E-value=39 Score=23.05 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=32.2
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|..||+.+..+.=+.+-|+.-|+|+...
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 46789999999999999999999999999998774
No 248
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=54.99 E-value=10 Score=30.68 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=35.3
Q ss_pred CCCcCcHHHHHH------HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 56 TRYDTSLGLLTK------KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 56 ~R~~kSLg~Lt~------kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.|-=.-||.++- ..++++.+. .+.++++++|+..++. .-||+..|+.+|++...
T Consensus 179 EkPLSdLG~~sYr~YW~~~il~~L~~~-~~~isi~~is~~T~i~---~~Dii~tL~~l~~l~~~ 238 (278)
T 2pq8_A 179 EKPLSDLGKLSYRSYWSWVLLENLRDF-RGTLSIKDLSQMTSIT---QNDIISTLQSLNMVKYW 238 (278)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTC--------CHHHHHHHCBC---HHHHHHHHHHTTCEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHhCCC---HHHHHHHHHHCCCEEEe
Confidence 344455777652 355666553 4689999999999994 68999999999999754
No 249
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=54.97 E-value=9.3 Score=25.63 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
=..|..-+++++.+..-.-+.+.++|+..||.+.-||-
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 16 EQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHH
Confidence 34577788899988776789999999999999998884
No 250
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=54.79 E-value=16 Score=24.34 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=33.1
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..=..|..-.++++.+..-.-+.++++|+..||.+.-||
T Consensus 10 ~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 4444567888888988877677999999999999999998
No 251
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=54.39 E-value=8.9 Score=30.15 Aligned_cols=43 Identities=2% Similarity=0.057 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEG 106 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ 106 (122)
....++++++.++....++++++|+.+++++|-|+-.++-.-|
T Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~~g 347 (412)
T 4fe7_A 305 PAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVG 347 (412)
T ss_dssp HHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 4567888888888888999999999999999999888775443
No 252
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=54.38 E-value=13 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
=..+..-.++++.+.+-.-+.++++|+..||.+.-||
T Consensus 8 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 44 (191)
T 1sgm_A 8 REKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLY 44 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHH
Confidence 3457778888998877778999999999999998888
No 253
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.36 E-value=16 Score=24.84 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.|..-=...+.++.++.+.-|+..+++.++++..+-+-=|+-.||.-+||.+.
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 344333344556677777888999999999999999999999999999999887
No 254
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=54.18 E-value=9.7 Score=26.94 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=34.9
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhH
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDI 100 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI 100 (122)
.+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||--
T Consensus 37 ~~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~ 79 (214)
T 2guh_A 37 AEQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKY 79 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHH
Confidence 3444456777889999987777899999999999999999853
No 255
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=54.13 E-value=13 Score=26.11 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=32.7
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.+...++|..||+.+..+.=+++-|+.-|+|+...+
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 210 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPR 210 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCC
Confidence 467899999999999999999999999999988743
No 256
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=53.65 E-value=9.6 Score=25.59 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=33.6
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..-..|..-.++++.+..-.-+.++++|+..||.+.-||-
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHH
Confidence 44455677788889888766779999999999999999883
No 257
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=53.57 E-value=2.6 Score=28.61 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=32.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..|..-.++++.+..-.-+.++++|+..||.+.-||-
T Consensus 19 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 59 (203)
T 3mnl_A 19 RERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYR 59 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHH
Confidence 33444577778888887655678999999999999998884
No 258
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=53.50 E-value=8.9 Score=26.01 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..=..|....++++.+..-.-+.++++|+..||.+.-||-
T Consensus 18 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 57 (212)
T 1pb6_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLY 57 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHH
Confidence 3344567778888887766789999999999999998884
No 259
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=53.38 E-value=4.9 Score=28.42 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=34.0
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
|.+..-..|....+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 37 r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 79 (225)
T 2id3_A 37 RTARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 3444445577778889888766679999999999999998884
No 260
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=53.31 E-value=13 Score=26.00 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=32.9
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeec-cC
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKK-SK 115 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~-~K 115 (122)
.+...++|..+|+.+.-+.-+.+-|+.-|+|+.. .+
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~ 203 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR 203 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC
Confidence 5678999999999999999999999999999986 44
No 261
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=53.29 E-value=6.5 Score=23.99 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.3
Q ss_pred cccHHHHHhHhccchhhhhhHHHh
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNV 103 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NV 103 (122)
.++..++|+.|||+++-||..+.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC
Confidence 367899999999999999999864
No 262
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=53.26 E-value=4.5 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=30.6
Q ss_pred cHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 82 DLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 82 dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
...++|+.|++.+--+..+++-||.-|+|++..
T Consensus 26 ~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 26 LRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 449999999999999999999999999999974
No 263
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=53.19 E-value=20 Score=29.07 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=41.7
Q ss_pred CCcCcHHHHH------HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccC
Q psy8797 57 RYDTSLGLLT------KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 57 R~~kSLg~Lt------~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
|-=.-||.++ ...++++.+. +..++|+++|+..++.. -||+..|+.+|++.....
T Consensus 180 kPLSdLG~~sY~~YW~~~i~~~L~~~-~~~isi~~is~~Tgi~~---~Dii~tL~~l~~l~~~kg 240 (276)
T 3to7_A 180 KPLSDLGLLSYRAYWSDTLITLLVEH-QKEITIDEISSMTSMTT---TDILHTAKTLNILRYYKG 240 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHT-CSEEEHHHHHHHHCBCH---HHHHHHHHHTTCEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhc-CCceeHHHHHHHhCCCH---HHHHHHHHHCCCEEEeCC
Confidence 3345577765 3356666664 56889999999999964 799999999999976533
No 264
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=53.17 E-value=17 Score=28.59 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=32.5
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHH----hhhhccc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITN----VLEGIGI 109 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~N----VLE~igL 109 (122)
...+|.+.|...+.|++.|+++++.|+-+-+=+. +||..|+
T Consensus 12 ~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~~~~ 56 (291)
T 1o57_A 12 LTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGI 56 (291)
T ss_dssp HHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHhcCC
Confidence 3456788999999999999999999997665444 7776654
No 265
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=53.02 E-value=18 Score=29.31 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=37.4
Q ss_pred CCCcCcHHHHH------HHHHHHHhhCCCC-----cccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 56 TRYDTSLGLLT------KKFVKLLQSSPQG-----VVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 56 ~R~~kSLg~Lt------~kFi~ll~~sp~~-----~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.|-=.-||.++ ...++++.+..+. .++|+++|+..++. .-||+..|+.+|++.-.
T Consensus 177 EkPLSdLG~~sYr~YW~~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~---~~Dii~tL~~l~~l~~~ 242 (280)
T 2ou2_A 177 EKPLSDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIK---KEDVISTLQYLNLINYY 242 (280)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHC-----------CCBHHHHHHHHCBC---HHHHHHHHHHTTCCCBC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcccccCCCCceeHHHHHHHhCCC---HHHHHHHHHHCCcEEEE
Confidence 34445577765 3355665544332 79999999999995 57999999999999654
No 266
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=52.77 E-value=13 Score=24.67 Aligned_cols=40 Identities=5% Similarity=0.126 Sum_probs=32.4
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..=..+....++++.+.+-.-+.++++|+..||.+.-||
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 3444567778888888876678999999999999998888
No 267
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=52.71 E-value=17 Score=24.61 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.=..+..-.+++|.+..-. ++++++|+..||.+--||
T Consensus 16 ~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tlY 52 (194)
T 2q24_A 16 NRDKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLY 52 (194)
T ss_dssp CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcC-CCHHHHHHHhCCChHHHH
Confidence 3445677777888766556 999999999999999888
No 268
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=52.36 E-value=17 Score=23.98 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.|..-.++++.+..-.-+.++++|++.||.+.-||-
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHH
Confidence 356667888887766679999999999999999984
No 269
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=51.61 E-value=15 Score=24.97 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.=..|....++++.+..-.-+.++++|+..||.+.-||
T Consensus 10 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 47 (193)
T 2dg8_A 10 RRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMT 47 (193)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhh
Confidence 33567788899998877778999999999999999888
No 270
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=51.58 E-value=13 Score=26.54 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
|.+..=..|..-.+++|.+..-.-+.++++|+..||.+--||-
T Consensus 40 ~~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~ 82 (255)
T 3g1o_A 40 SGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 82 (255)
T ss_dssp -CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHH
Confidence 3444445678889999988766789999999999999988883
No 271
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=51.49 E-value=34 Score=24.27 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=32.2
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|+.||+.+.-+.=+.+-|+.-|+|+...
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~ 220 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELHR 220 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecC
Confidence 46789999999999999999999999999998763
No 272
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=51.39 E-value=16 Score=25.47 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=33.3
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+.+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 32 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~ 74 (221)
T 3g7r_A 32 TPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYR 74 (221)
T ss_dssp --CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 3444555677778888888766779999999999999988883
No 273
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=51.39 E-value=11 Score=26.58 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
=..|..-.+++|.+..-.-+.++++|+..||.+.-||
T Consensus 15 r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y 51 (231)
T 2qib_A 15 RQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVY 51 (231)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 3457778899999877778999999999999999998
No 274
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=51.02 E-value=14 Score=26.48 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.5
Q ss_pred cccHHHHHhHhccchh-hhhhHHHhhhhccceeeccC
Q psy8797 80 VVDLNVASESLDVQKR-RIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 80 ~idL~~aa~~L~v~kR-RiYDI~NVLE~igLI~K~~K 115 (122)
.+...++|..||+.+| -+.=+++-|+.-|+|+...+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~ 205 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNS 205 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCC
Confidence 4677999999999998 99999999999999988743
No 275
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=51.01 E-value=16 Score=24.45 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=31.7
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..=..|..-.+++|.+. .-+.++++|+..||.+--||-
T Consensus 12 ~~~~r~~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~ 51 (190)
T 2v57_A 12 RERTRRAILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHR 51 (190)
T ss_dssp -CHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHH
Confidence 3344456778888888887 778999999999999988883
No 276
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=50.79 E-value=37 Score=23.28 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=32.2
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|+.||+.+.-+.=+++-|+.-|+|+...
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 36789999999999999999999999999998874
No 277
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=50.71 E-value=22 Score=24.23 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=35.3
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 455566788889999998877789999999999999988883
No 278
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=50.38 E-value=15 Score=24.44 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+....++++.+..=.-+.++++|++.||.+.-||-
T Consensus 7 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 7 ILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 55677788887766779999999999999998884
No 279
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=50.20 E-value=8.3 Score=26.57 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 3344567778888888766779999999999999999884
No 280
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=50.20 E-value=15 Score=25.37 Aligned_cols=35 Identities=6% Similarity=0.091 Sum_probs=31.9
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|+.||+.+..+.-+++-|+.-|+|+...
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 36789999999999999999999999999999763
No 281
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=50.16 E-value=24 Score=22.39 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccce
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGIL 110 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI 110 (122)
.+++.++.+ + .++.++|..|++.++-||.+++-++.-|..
T Consensus 24 ~~i~~~~~~--g--~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~ 63 (128)
T 1pdn_C 24 LKIVEMAAD--G--IRPCVISRQLRVSHGCVSKILNRYQETGSI 63 (128)
T ss_dssp HHHHHHHHT--T--CCHHHHHHHHTCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHc--C--CCHHHHHHHHCcCHHHHHHHHHHHHhhCCc
Confidence 345555542 2 588999999999999999999988765644
No 282
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=49.77 E-value=14 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=31.6
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.....++|+.|++.+=-+-.+++-||.-|+|++..
T Consensus 24 ~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (226)
T 2qq9_A 24 TPLRARIAERLEQSGPTVSQTVARMERDGLVVVAS 58 (226)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 33569999999999999999999999999999974
No 283
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=49.72 E-value=29 Score=23.56 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 60 TSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 60 kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..=..+..-.+++|.+..=.-+.++++|+..||.|.-||
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y 52 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLY 52 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGT
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeee
Confidence 334557777888888877678999999999999999888
No 284
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=49.67 E-value=13 Score=24.55 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..+....++++.+.+-.-++++++|+..||.+.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 3466778888888766779999999999999988883
No 285
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=49.47 E-value=17 Score=24.12 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.=..|..-.++++.+..-.-+.++++|+..||.+.-||
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y 50 (199)
T 3on2_A 13 LRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPS 50 (199)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CC
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHH
Confidence 33557777888888876677999999999999888887
No 286
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=49.39 E-value=27 Score=22.74 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHH-HhhCCCCcccHHHHHhHhccchhhhhhHHH
Q psy8797 60 TSLGLLTKKFVKL-LQSSPQGVVDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 60 kSLg~Lt~kFi~l-l~~sp~~~idL~~aa~~L~v~kRRiYDI~N 102 (122)
.++..+-+.+|.. +... ++ ++..||+.||+.|+-||.-+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~-~G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMC-DR--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHT-TS--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHh-CC--CHHHHHHHhCCCHHHHHHHHH
Confidence 4566676776654 4443 32 578999999999999997654
No 287
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=49.36 E-value=19 Score=23.75 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=33.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..+..-.++++.+..-.-++++++|+..||.+.-||=
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhh
Confidence 34445677888888888766779999999999999998883
No 288
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=49.36 E-value=24 Score=26.51 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=35.6
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..+-..+..-.++++.+..-.-+.+.++|+++||.+--||=
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~ 66 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYY 66 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHT
T ss_pred cccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 56677888999999988777789999999999999999883
No 289
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=49.16 E-value=19 Score=27.63 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=40.1
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 65 LTKKFVKLLQS---SPQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 65 Lt~kFi~ll~~---sp~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+...+.+.+.+ .|+..+ +-.++|+.++|+|=-+-..++.|+.-|+|.+.
T Consensus 34 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 34 VAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp HHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45555555544 356677 89999999999999999999999999999876
No 290
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=49.13 E-value=16 Score=25.49 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=32.3
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+.-.++|..||+.+.-+.=+++-|+.-|+|+...
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC
Confidence 36789999999999999999999999999999874
No 291
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=49.02 E-value=7.4 Score=26.15 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=32.3
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
|.+..=..+..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 11 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 53 (191)
T 4aci_A 11 KPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFH 53 (191)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHH
Confidence 3444445677778888877655568999999999999999984
No 292
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=47.92 E-value=14 Score=24.77 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=33.5
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..=..|..-.+++|.+.+-.-+.++++|+..||.+.-||
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVY 54 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSST
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhh
Confidence 34444567888889998877678999999999999998887
No 293
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=47.80 E-value=22 Score=27.89 Aligned_cols=45 Identities=9% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHHHHhh--CCCCcccHHHHHhHhcc-ch---hhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQS--SPQGVVDLNVASESLDV-QK---RRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~--sp~~~idL~~aa~~L~v-~k---RRiYDI~NVLE~igLI~K~ 113 (122)
..+.+.+ .|++.+++.++|++++. .. +.++-|..+|.++|+++..
T Consensus 46 lfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 46 VLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp HHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred chhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 4455555 45678999999999973 33 4899999999999999885
No 294
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=47.29 E-value=22 Score=26.14 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=35.0
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
|...+-..+..-.++++.+..-.-+++.++|+++||.+--||-
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~ 45 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYA 45 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHH
Confidence 3344556688888999988766789999999999999998884
No 295
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=46.60 E-value=20 Score=24.05 Aligned_cols=41 Identities=7% Similarity=-0.022 Sum_probs=33.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..+....++++.+.+-.-+.++++|+..||.+.-||-
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 33444577778888888776789999999999999998883
No 296
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=46.28 E-value=38 Score=18.99 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=19.2
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
.+..++|+.|++.+.-+|.+++
T Consensus 32 ~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 5899999999999999987764
No 297
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=46.20 E-value=21 Score=24.16 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=33.6
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..-..|..-.+++|.+..-.-++++++|+..||.+.-||-
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (216)
T 3s5r_A 8 DKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHY 49 (216)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHH
Confidence 344445677888888888766779999999999999999884
No 298
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=46.10 E-value=21 Score=23.66 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=32.4
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..=..+..-.++++.+..-.-++++++|+..||.+.-||-
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHH
Confidence 344455677778888887766779999999999999988883
No 299
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=46.07 E-value=12 Score=31.93 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhcccee
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILE 111 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~ 111 (122)
.+|..+|.++|+++++.=.+++|+++.|..-|||+
T Consensus 399 ~dG~~slldia~~~~~~~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 399 SDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLK 433 (435)
T ss_dssp CEEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred ccCCccHHHHHHHhCcCHHHHHHHHHHHHHccCcc
Confidence 57889999999999999999999999999999987
No 300
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=45.88 E-value=23 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..+..-.++++.+.+-.-++++++|+..||.+.-||-
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 10 ERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 3456667888888776789999999999999998883
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.60 E-value=26 Score=24.34 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-----ccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++++.+++ .++..++.+.| .+.+==+|-.++.|+..|+|.+..
T Consensus 24 Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 24 VLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 556666554 57888888877 678889999999999999999874
No 302
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=45.51 E-value=22 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=33.5
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..+....++++.+..-.-+.++++|+..||.+.-||-
T Consensus 12 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 12 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 33445677788899988776779999999999999998883
No 303
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=45.50 E-value=17 Score=24.22 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..|..-.++++.+.+-.-+.++++|++.||.+.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 11 SRLMEVATELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHH
Confidence 4567778888888766789999999999999999884
No 304
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=45.45 E-value=27 Score=28.46 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
+++++... ..+....+++.++++++-..-.++-|...|++++.+
T Consensus 302 ll~~l~~~--p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 302 LVQVIFEQ--PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HHHHHHHC--SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred HHHHHHHC--CCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 34444443 357889999999999999999999999999998874
No 305
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=45.25 E-value=20 Score=25.81 Aligned_cols=35 Identities=6% Similarity=0.110 Sum_probs=32.2
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|..||+.+.-+.=+++-|+.-|+|+...
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcC
Confidence 46789999999999999999999999999999863
No 306
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=45.01 E-value=17 Score=28.76 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 66 TKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 66 t~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
-..++..+ . +..+..++|+.++...|++..+++.|.+.|+++...
T Consensus 45 ~~~ll~~L-~---~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~~~ 89 (373)
T 2qm3_A 45 VENVLSAV-L---ASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFED 89 (373)
T ss_dssp HHHHHHHH-H---HCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSS
T ss_pred HHHHHHHh-c---CCCCHHHHHHHhCCChHHHHHHHHHHhhCCcEEECC
Confidence 34455555 2 347889999999999999999999999999998753
No 307
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=44.49 E-value=21 Score=24.98 Aligned_cols=35 Identities=3% Similarity=0.040 Sum_probs=32.1
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|..+|+.+..+.=+++-|+.-|+|+...
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 36789999999999999999999999999998863
No 308
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=44.25 E-value=15 Score=22.18 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH-HhhCCCCcccHHHHHhHhccchhhhhhHHHh
Q psy8797 62 LGLLTKKFVKL-LQSSPQGVVDLNVASESLDVQKRRIYDITNV 103 (122)
Q Consensus 62 Lg~Lt~kFi~l-l~~sp~~~idL~~aa~~L~v~kRRiYDI~NV 103 (122)
+..+-+.+|.. +... + +...+|+.||+.++-||.-+.-
T Consensus 18 l~~~Er~~I~~aL~~~--g--n~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp CSHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh--C--CHHHHHHHhCCCHHHHHHHHHH
Confidence 44455555554 4444 2 6789999999999999977653
No 309
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=44.24 E-value=23 Score=23.81 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.-..|..-.++++.+..-.-+.++++|+..||.+.-||-
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (220)
T 3lhq_A 15 TRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYW 53 (220)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehh
Confidence 334566778888887766779999999999999998884
No 310
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=43.98 E-value=32 Score=23.18 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=31.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccce
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGIL 110 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI 110 (122)
.+.+.++.+ + .++.++|+.|++.++-||.+++-.+.-|.+
T Consensus 39 ~~iv~~~~~---G-~s~~~iA~~lgis~~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 39 QRIVELAHQ---G-VRPCDISRQLRVSHGCVSKILGRYYETGSI 78 (149)
T ss_dssp HHHHHHHHT---T-CCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHc---C-CCHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 445555542 2 688999999999999999999988766654
No 311
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.55 E-value=25 Score=25.02 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=31.5
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+-..+..-.++++.+.. -+++.++|+.+||.+--||
T Consensus 10 ~~~r~~Il~aA~~l~~~~G--~~s~~~IA~~aGvs~~tlY 47 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIY 47 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCHHHHHHHhCCCHhHHH
Confidence 4455668888888888765 8999999999999998888
No 312
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=43.42 E-value=22 Score=24.11 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+..-.+++|.+..=.-+.++++|+..||.|.-||
T Consensus 15 ~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY 50 (192)
T 2fq4_A 15 KAILSASYELLLESGFKAVTVDKIAERAKVSKATIY 50 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHH
Confidence 446677888888776678999999999999999988
No 313
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=43.04 E-value=23 Score=24.87 Aligned_cols=35 Identities=3% Similarity=-0.044 Sum_probs=32.5
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|..||+.+.-+.-+++-|+.-|+|+...
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 56889999999999999999999999999998874
No 314
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=42.96 E-value=12 Score=26.28 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=32.4
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 56 TRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 56 ~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+.+..=..|..-.+++|.+..-.-+.++++|+..||.+--||
T Consensus 26 ~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY 68 (226)
T 2pz9_A 26 GSTDSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVY 68 (226)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHHHH
Confidence 3445555677888888888765556899999999999999888
No 315
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=42.92 E-value=26 Score=23.77 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 12 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 47 (199)
T 2o7t_A 12 HIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYR 47 (199)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHH
Confidence 456667888888776789999999999999988883
No 316
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=42.70 E-value=25 Score=23.65 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+....+++|.+..=.-+.++++|+..||.|--||
T Consensus 8 Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y 41 (190)
T 3vpr_A 8 ILEEAAKLFTEKGYEATSVQDLAQALGLSKAALY 41 (190)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 4556777887776677899999999999888887
No 317
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=42.63 E-value=41 Score=24.81 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=29.3
Q ss_pred cccHHHHHhHh-----ccchhhhhhHHHhhhhccceeec
Q psy8797 80 VVDLNVASESL-----DVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 80 ~idL~~aa~~L-----~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..++.+++..+ ++....+++.++.|+..|+|.+.
T Consensus 295 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 295 YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 46778887777 78888999999999999999886
No 318
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=42.33 E-value=16 Score=25.47 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCcCcHHHHHHHHHHH-HhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 56 TRYDTSLGLLTKKFVKL-LQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 56 ~R~~kSLg~Lt~kFi~l-l~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.|....-..|..-++++ +.+.+=.-+.++++|++-||.|.-||
T Consensus 15 ~r~~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y 58 (185)
T 3o60_A 15 LRTQKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFY 58 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHH
Confidence 34455556677889999 58777778999999999999999888
No 319
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.06 E-value=44 Score=19.90 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNV 103 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NV 103 (122)
..+-+.+|.......+ -+...||+.||+.++-||.-+.-
T Consensus 17 ~~~E~~~i~~aL~~~~--gn~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 17 KEFEKIFIEEKLREYD--YDLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHHHHHHHTT--TCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344555544333223 25789999999999999987654
No 320
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=42.02 E-value=22 Score=27.51 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=31.7
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhcccee-ec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILE-KK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~-K~ 113 (122)
+.+...++|++|+|++.-+-=-++.|+.-|+|+ +.
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEe
Confidence 448999999999999999999999999999998 65
No 321
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=41.86 E-value=46 Score=21.64 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccce
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGIL 110 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI 110 (122)
.++.++.+ + .+..++|..||+.+.-+|.+++-...-|..
T Consensus 14 ~i~~~~~~---G-~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~ 52 (141)
T 1u78_A 14 QLDVMKLL---N-VSLHEMSRKISRSRHCIRVYLKDPVSYGTS 52 (141)
T ss_dssp HHHHHHHT---T-CCHHHHHHHHTCCHHHHHHHHHSGGGTTCC
T ss_pred HHHHHHHc---C-CCHHHHHHHHCcCHHHHHHHHHcccccCCc
Confidence 34555542 2 588999999999999999999877665543
No 322
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=41.60 E-value=27 Score=22.44 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=30.8
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+...+.++|+.|++.+=-++--+++|+.. +|...
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhhe
Confidence 45899999999999999999999999999 99744
No 323
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=40.64 E-value=5.8 Score=27.41 Aligned_cols=38 Identities=8% Similarity=0.004 Sum_probs=7.3
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.=..|-.-++++|.+..-.-+.++++|+..||.+--||
T Consensus 31 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 68 (212)
T 2np3_A 31 TREAILTAARVCFAERGFDATSLRRIAETAGVDQSLVH 68 (212)
T ss_dssp ----CHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHH
Confidence 33456777888888877777999999999999888877
No 324
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=40.53 E-value=25 Score=26.83 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=37.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
..+++.+... .+.+.-.++|+.|++..+-+-+.++.|+.-|+|+...
T Consensus 18 EdYLk~I~~L-~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 18 EDVLAVIFLL-KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp HHHHHHHHHT-TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHH-cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4444443333 3568889999999999999999999999999998764
No 325
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=40.50 E-value=33 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.1
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..+..-.+++|.+..-. ++++++|+..||.+.-||-
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~-~t~~~IA~~aGvs~~tly~ 47 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVG-IGVEALCKAAGVSKRSMYQ 47 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHH
Confidence 334455777788888887777 9999999999999988883
No 326
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=40.46 E-value=38 Score=21.69 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNV 103 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NV 103 (122)
+-+.+|.......++ +...+|+.||+.|+-||.-+.-
T Consensus 51 ~E~~~i~~aL~~~~g--n~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 51 LERTLLTTALRHTQG--HKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHTTT--CTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 334445443322233 4568999999999999987654
No 327
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=40.44 E-value=31 Score=22.66 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=32.6
Q ss_pred HHHHHhhCCCCcccH-HHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 69 FVKLLQSSPQGVVDL-NVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 69 Fi~ll~~sp~~~idL-~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.++...|..-.+| .++++.+++..--||-+++-||.-|+|++.
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 445555555433443 334455789999999999999999999876
No 328
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=39.71 E-value=35 Score=25.19 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=33.9
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 40 ~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~ 80 (273)
T 3c07_A 40 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYY 80 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHH
Confidence 33445677889999998877789999999999999999983
No 329
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=39.53 E-value=30 Score=23.93 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..|-.-.+++|.+..=.-+.++++|+..||.|.-||
T Consensus 25 ~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY 60 (207)
T 3bjb_A 25 VRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLY 60 (207)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHH
Confidence 346677888888876677999999999999999998
No 330
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=39.49 E-value=36 Score=22.86 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=28.0
Q ss_pred CCcCcHHHHHHHHHHHH-hhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 57 RYDTSLGLLTKKFVKLL-QSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 57 R~~kSLg~Lt~kFi~ll-~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
|.+..=..+....++++ .+..-.-+.++++|++.||.+.-||-
T Consensus 21 ~~~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 64 (212)
T 3nxc_A 21 AKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYR 64 (212)
T ss_dssp --CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHH
Confidence 34445566777778855 55454678999999999999998883
No 331
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=39.25 E-value=28 Score=23.68 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..-.+++|.+..=.-+.++++|+..||.|.-||
T Consensus 14 Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y 47 (204)
T 3anp_C 14 IFRAAMELFRNRGFQETTATEIAKAAHVSRGTFF 47 (204)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHcCCchHHHH
Confidence 5556778887766667899999999999999888
No 332
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=38.67 E-value=40 Score=22.90 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..-.+++|.+..- -+.++++|+..||.+--||
T Consensus 17 ~Il~aA~~lf~~~G~-~~t~~~IA~~agvs~~tlY 50 (196)
T 2qwt_A 17 RVLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVY 50 (196)
T ss_dssp HHHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCCCHHHHH
Confidence 456667888877765 6899999999999998888
No 333
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=38.52 E-value=29 Score=23.15 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+..-.++++.+.+-.-++++++|+..||.+--||
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y 49 (203)
T 3b81_A 14 TELANKIWDIFIANGYENTTLAFIINKLGISKGALY 49 (203)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHH
Confidence 346666788888776677999999999999998888
No 334
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=38.36 E-value=44 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhC-CCCcccHHHHHhHhccchhhhh
Q psy8797 62 LGLLTKKFVKLLQSS-PQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~s-p~~~idL~~aa~~L~v~kRRiY 98 (122)
=..+....++++.+. .-.-+.++++|+++||.+--||
T Consensus 7 r~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY 44 (220)
T 1z0x_A 7 KDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIY 44 (220)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHH
Confidence 345777788999887 5567999999999999998888
No 335
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.15 E-value=26 Score=24.70 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.-..|....++++.+..-.-++++++|+..||.+--||-
T Consensus 17 ~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 55 (216)
T 2oi8_A 17 VRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 334566778888888777779999999999999988883
No 336
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=37.89 E-value=36 Score=22.99 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..|..-.+++|.+.+-.-+.++++|+..||.+.-||-
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 50 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYY 50 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHH
Confidence 34445577778888888776779999999999999998883
No 337
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=37.85 E-value=41 Score=23.38 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=31.6
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..=..+-.--+++|.+..=.-++++++|+..||.|.-||
T Consensus 8 ~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY 47 (215)
T 1ui5_A 8 EQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALY 47 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhH
Confidence 3334456677778887766667899999999999999998
No 338
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=37.81 E-value=46 Score=22.62 Aligned_cols=36 Identities=3% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+..-.+++|.+..=.-++++++|+..||.|.-||
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y 48 (197)
T 2f07_A 13 EKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFY 48 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHH
Confidence 346677788888766667899999999999888888
No 339
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=37.73 E-value=27 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHh-hCCCCcccHHHHHhHhccchhhhhh
Q psy8797 61 SLGLLTKKFVKLLQ-SSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 61 SLg~Lt~kFi~ll~-~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.=..|..-.+++|. +.+-.-+.++++|+..||.+.-||-
T Consensus 12 ~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~ 51 (220)
T 3lsj_A 12 TRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYR 51 (220)
T ss_dssp HHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTT
T ss_pred HHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHH
Confidence 33456777888998 7766789999999999999998884
No 340
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=37.40 E-value=26 Score=23.93 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.|..-.++++.+.+-.-+.++++|+..||.+.-||-
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~ 42 (212)
T 3rh2_A 7 KIIQASLELFNEHGERTITTNHIAAHLDISPGNLYY 42 (212)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 355667788877666679999999999999998884
No 341
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.91 E-value=39 Score=25.24 Aligned_cols=30 Identities=40% Similarity=0.538 Sum_probs=25.6
Q ss_pred HHHHhHhccch---hhhhhHHHhhhhccceeec
Q psy8797 84 NVASESLDVQK---RRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 84 ~~aa~~L~v~k---RRiYDI~NVLE~igLI~K~ 113 (122)
.++|+.+++.. ..++++.+.|+..|+|++.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 316 LNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 67788887654 8999999999999999875
No 342
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=36.88 E-value=22 Score=24.39 Aligned_cols=36 Identities=6% Similarity=-0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..|..-.+++|.+..=. +.++++|+..||.+.-||-
T Consensus 15 ~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~ 50 (224)
T 1t33_A 15 SQLIAAALAQFGEYGLH-ATTRDIAALAGQNIAAITY 50 (224)
T ss_dssp HHHHHHHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHH
Confidence 44667778888877667 9999999999999998883
No 343
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=36.67 E-value=40 Score=22.46 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhc
Q psy8797 66 TKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGI 107 (122)
Q Consensus 66 t~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~i 107 (122)
..+.++++.+ +..++|+++|+.+|++.+-|+-+..-.-|+
T Consensus 81 l~~a~~~i~~--~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~ 120 (133)
T 1u8b_A 81 ITHACRLLEQ--ETPVTLEALADQVAMSPFHLHRLFKATTGM 120 (133)
T ss_dssp HHHHHHHTCS--SSCCCHHHHHHHHTSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHh--cCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 3445555555 667999999999999999888877654444
No 344
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=36.63 E-value=39 Score=23.89 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..|..-.++++.+..-.-+.+.++|+..||.+.-||
T Consensus 10 ~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y 45 (213)
T 3ni7_A 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIR 45 (213)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHH
Confidence 456677888998877678999999999999999888
No 345
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=36.24 E-value=21 Score=24.72 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
-..+..--+++|.+..-.-+.++++|+..||.+.-||
T Consensus 26 r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY 62 (214)
T 2oer_A 26 VASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLY 62 (214)
T ss_dssp HHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHH
Confidence 3445555666777665567899999999999988888
No 346
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=36.16 E-value=34 Score=22.79 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..-.+++|.+..=.-++++++|+..||.|.-||
T Consensus 7 Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY 40 (179)
T 2eh3_A 7 ILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFY 40 (179)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHH
Confidence 4455667777766667899999999999998888
No 347
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=35.94 E-value=31 Score=24.85 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 47 ~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~ 87 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLR 87 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHH
Confidence 33444567778899988776779999999999999998883
No 348
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=35.93 E-value=55 Score=20.53 Aligned_cols=37 Identities=3% Similarity=0.060 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhcc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIG 108 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ig 108 (122)
..+.++.. + ..+.++|..|+|.+.-||.+++-.+...
T Consensus 30 ~~v~~~~~--g--~s~~~iA~~~gIs~sTl~rW~k~~~~~~ 66 (87)
T 2elh_A 30 HAIQRIHD--G--ESKASVARDIGVPESTLRGWCKNEDKLR 66 (87)
T ss_dssp HHHHHHHH--T--CCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--C--CCHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 45555532 2 5889999999999999999998766543
No 349
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=35.72 E-value=40 Score=22.28 Aligned_cols=36 Identities=6% Similarity=-0.046 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..-.++++.+..-.-+.++++|+..||.+.-||-
T Consensus 11 ~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~ 46 (180)
T 2fd5_A 11 RILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYA 46 (180)
T ss_dssp HHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGG
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHH
Confidence 355667777777666678999999999999998883
No 350
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=35.63 E-value=56 Score=28.15 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhh-----ccceeecc
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEG-----IGILEKKS 114 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~-----igLI~K~~ 114 (122)
-....+.++.+.+ .++..++|+.|++..+.+-.+++-|.. .|+|++.+
T Consensus 431 ~~~~iL~~l~~~~--~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g 483 (583)
T 3lmm_A 431 RIAIVLYLLFQRP--FITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD 483 (583)
T ss_dssp HHHHHHHHHHHSS--SBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET
T ss_pred hHHHHHHHHHHCC--CcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC
Confidence 3445677777654 589999999999999999999999977 89999986
No 351
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.60 E-value=27 Score=26.49 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.8
Q ss_pred cHHHHHhHhc---cchhhhhhHHHhhhhccceeec
Q psy8797 82 DLNVASESLD---VQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 82 dL~~aa~~L~---v~kRRiYDI~NVLE~igLI~K~ 113 (122)
....+|+.++ +..++++++++-|+..|+|++.
T Consensus 305 ~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 305 MYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 4567777776 4679999999999999999985
No 352
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=35.56 E-value=34 Score=23.29 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..-.+++|.+..=.-++++++|+..||.+.-||
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY 52 (204)
T 2ibd_A 18 ELLDIAATLFAERGLRATTVRDIADAAGILSGSLY 52 (204)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHH
Confidence 35566778887766667899999999999998888
No 353
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=35.29 E-value=29 Score=24.06 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..-.+++|.+.+-.-+.++++|++.||.+.-||-
T Consensus 9 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 44 (228)
T 3nnr_A 9 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYY 44 (228)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchh
Confidence 466677888887766779999999999999999883
No 354
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=34.90 E-value=1.1e+02 Score=22.36 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHh----Hhc--cchhhhhhHHHhhhhccceeeccCCcee
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASE----SLD--VQKRRIYDITNVLEGIGILEKKSKNNIQ 119 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~----~L~--v~kRRiYDI~NVLE~igLI~K~~Kn~~~ 119 (122)
..+.++..+.. +. ++.+++. .++ +....+++.++.|+..|+|.+.. +.|.
T Consensus 291 ~~~~~l~~la~---g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~ 346 (357)
T 2fna_A 291 RYLNIMRTLSK---CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYC 346 (357)
T ss_dssp HHHHHHHHHTT---CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEE
T ss_pred HHHHHHHHHHc---CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEE
Confidence 34445555543 33 7777764 456 77889999999999999999864 4444
No 355
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.76 E-value=33 Score=23.46 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccce
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGIL 110 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI 110 (122)
.+++.++.+. .++.++|..|++.+.-||.+++-.+.-|.+
T Consensus 32 ~~ii~l~~~G----~s~~~IA~~lgis~~TV~rwl~r~~~~G~~ 71 (159)
T 2k27_A 32 QRIVDLAHQG----VRPCDISRQLRVSHGCVSKILGRYYETGSI 71 (159)
T ss_dssp HHHHHHHHHT----CCHHHHHHHHTCCSHHHHHHHCCSSTTSCC
T ss_pred HHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHhcCCc
Confidence 4456666432 689999999999999999999987765653
No 356
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=34.65 E-value=20 Score=23.85 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
=..+..-.++++.+.+-.-+.++++|+..||.+.-||-
T Consensus 16 r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (156)
T 3ljl_A 16 IQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISH 53 (156)
T ss_dssp HHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHH
Confidence 34566778888887665678999999999999999884
No 357
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=34.12 E-value=36 Score=23.44 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+....+++|.+..=.-+.++++|+..||.+.-||
T Consensus 11 ~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y 46 (206)
T 1vi0_A 11 MQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIY 46 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHH
Confidence 456667778887766567899999999999999888
No 358
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=34.09 E-value=34 Score=23.47 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+-.--.++|.+..=.-++++++|+..||.|.-||
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY 49 (210)
T 2wui_A 15 GILDAAERVFLEKGVGTTAMADLADAAGVSRGAVY 49 (210)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHH
Confidence 35555667777766667899999999999999888
No 359
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=33.95 E-value=11 Score=28.53 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=5.1
Q ss_pred CCCcc-cHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 77 PQGVV-DLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 77 p~~~i-dL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
|+..+ ...++|+.++|+|=-+-..++.|+.-|+|.+.
T Consensus 36 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 36 PGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp --------------------------------CEEEEE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 55666 89999999999999999999999999999875
No 360
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=33.86 E-value=35 Score=22.73 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..|..--++++.+.+-.-+.++++|++.||.+.-||-
T Consensus 11 ~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~ 47 (194)
T 3dpj_A 11 DQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYY 47 (194)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHH
Confidence 3456667788877666778999999999999988884
No 361
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=33.79 E-value=18 Score=23.92 Aligned_cols=36 Identities=6% Similarity=0.090 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+....++++.+..-..+.++++|+..||.+.-||-
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (195)
T 3pas_A 12 AFLEATVREVADHGFSATSVGKIAKAAGLSPATLYI 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHH
Confidence 455667778877655678999999999999998883
No 362
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=33.73 E-value=31 Score=24.10 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=29.8
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
+..=..|..--+++|.+..-.-+.++++|+..||.+.-||=
T Consensus 34 ~~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~ 74 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTY 74 (237)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTTTC--
T ss_pred HHHHHHHHHHHHHHHHhcChhhcCHHHHHHHhCCChhHHHH
Confidence 33444566677778877666678999999999999988883
No 363
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=33.69 E-value=26 Score=26.23 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=33.0
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..-..+....+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 118 ~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~ 159 (311)
T 4ich_A 118 QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHY 159 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 344445577778888887666679999999999999998883
No 364
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=33.69 E-value=23 Score=24.80 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=23.7
Q ss_pred ccHHHHHhHhccchhhhhhHHHhhhhc
Q psy8797 81 VDLNVASESLDVQKRRIYDITNVLEGI 107 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~NVLE~i 107 (122)
.++.++|.+.+++-|+||-|++=....
T Consensus 93 ~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 93 RNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999866554
No 365
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=33.61 E-value=30 Score=23.57 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 17 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~ 54 (221)
T 3c2b_A 17 QNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYK 54 (221)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 34577778888887666679999999999999998883
No 366
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=33.02 E-value=45 Score=23.09 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhcc-chhhhhhHHHh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDV-QKRRIYDITNV 103 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v-~kRRiYDI~NV 103 (122)
.++.++++++... .+|.++|...++ .++-||.+++-
T Consensus 16 e~~e~I~~~i~~G----~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 16 EVADDICSLLSSG----ESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp THHHHHHHHHHTT----CCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC----CcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3667788888753 689999999999 89999998764
No 367
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=32.97 E-value=27 Score=19.63 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.1
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+|+.+..|+.+.|
T Consensus 15 ~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 15 ISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 6789999999999988888765
No 368
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=32.84 E-value=23 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=31.5
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 58 YDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 58 ~~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..=..|..--+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 16 ~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~ 57 (251)
T 3npi_A 16 TEVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHY 57 (251)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHHHH
Confidence 344445566777777776544568999999999999998883
No 369
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=32.74 E-value=14 Score=24.79 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..+..-.++++.+.+-.-+.++++|+..||.+.-||-
T Consensus 14 ~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~ 50 (204)
T 3eup_A 14 QFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYG 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTT
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHH
Confidence 4566677788877655678999999999999988883
No 370
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=32.53 E-value=54 Score=22.25 Aligned_cols=36 Identities=3% Similarity=0.087 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+...-+++|.+..=.-++++++|+..||.+.-||
T Consensus 10 ~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY 45 (197)
T 2gen_A 10 DEILQAALACFSEHGVDATTIEMIRDRSGASIGSLY 45 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHH
Confidence 345666777777766667899999999999998888
No 371
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=32.47 E-value=39 Score=22.92 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..-.+++|.+..-.-++++++|+..||.+--||
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y 49 (212)
T 2ras_A 15 RLVDVAQAIVEERGGAGLTLSELAARAGISQANLS 49 (212)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHH
Confidence 45666778887766667899999999999888887
No 372
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=32.46 E-value=43 Score=22.39 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..--++++.+..-.-+.++++|++.||.+.-||
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 45 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLY 45 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHH
Confidence 45566677777766667899999999999999988
No 373
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=31.69 E-value=26 Score=23.56 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
=..+..-.++++.+..-.-+.++++|+..||.+.-||-
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 47 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQ 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHHHH
Confidence 45577778888877655578999999999999998883
No 374
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=31.50 E-value=70 Score=20.09 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEG 106 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ 106 (122)
.++.-+|..+....=-..++.++|..|++.--.+-.|..++..
T Consensus 32 ~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ~ 74 (76)
T 2k9l_A 32 ELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 74 (76)
T ss_dssp HHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4556666666654333678999999999988777777776654
No 375
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=30.91 E-value=45 Score=22.71 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..--+++|.+..=.-++++++|+..||.|.-||
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY 49 (210)
T 2xdn_A 15 QIIEAAERAFYKRGVARTTLADIAELAGVTRGAIY 49 (210)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHH
Confidence 35566677777766667899999999999998888
No 376
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=30.65 E-value=37 Score=24.11 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..-.++++.+..-.-+++.++|+++||.+--||-
T Consensus 6 ~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 41 (209)
T 3bqy_A 6 RTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYR 41 (209)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHhCCCcchHHh
Confidence 455667888887766779999999999999988884
No 377
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=30.44 E-value=49 Score=23.22 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=29.6
Q ss_pred ccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 81 VDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
+...++|..||+.+..+.-+.+-|+.-|+ . ...+.+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~-~~~~~i 214 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAGV-T-VKRNHA 214 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGTE-E-CCTTEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCe-E-eeCCEE
Confidence 34679999999999999999999999996 3 334444
No 378
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=30.15 E-value=48 Score=22.46 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+-.-..++|.+..=.-++++++|+..||.+.-||
T Consensus 16 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY 50 (197)
T 2hyt_A 16 TLLATARKVFSERGYADTSMDDLTAQASLTRGALY 50 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 35556677777766567899999999999999888
No 379
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=30.06 E-value=60 Score=21.58 Aligned_cols=21 Identities=5% Similarity=0.090 Sum_probs=17.9
Q ss_pred cHHHHHhHhccchhhhhhHHH
Q psy8797 82 DLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 82 dL~~aa~~L~v~kRRiYDI~N 102 (122)
+...||+.||+.|+-||.-+.
T Consensus 73 n~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 577999999999999997654
No 380
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.91 E-value=57 Score=22.29 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..+-..-+++|.+..-.-+.++++|+..||.+--||=
T Consensus 11 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~ 47 (202)
T 2d6y_A 11 ARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYA 47 (202)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 3455667778777666678999999999999988883
No 381
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=29.91 E-value=46 Score=23.17 Aligned_cols=39 Identities=5% Similarity=-0.023 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.=..|..-.+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~ 67 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTY 67 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhh
Confidence 445577778888888766789999999999999998884
No 382
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=29.66 E-value=99 Score=18.91 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=16.6
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+||.+..|++|.|
T Consensus 22 ltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 22 VSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 5677888888887777777765
No 383
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=29.20 E-value=34 Score=19.31 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=19.0
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+|+.+..|+.+.|
T Consensus 19 ~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 19 IRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 6789999999999988887765
No 384
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=29.14 E-value=50 Score=22.19 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.|..--+++|.+..-.-+.++++|+..||.+.-||-
T Consensus 11 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~ 46 (178)
T 4hku_A 11 IILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYK 46 (178)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHH
Confidence 455556677777665678999999999999999883
No 385
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=28.74 E-value=36 Score=23.22 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+...=+++|.+..=.-++++++|+..||.+.-||
T Consensus 14 Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY 47 (203)
T 3cdl_A 14 IVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVY 47 (203)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 4455566666655567899999999999999888
No 386
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.66 E-value=1e+02 Score=21.73 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHhhCCCCcccHHHHHhHh-------ccchhhhhhHHHhhhhccceeecc
Q psy8797 69 FVKLLQSSPQGVVDLNVASESL-------DVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 69 Fi~ll~~sp~~~idL~~aa~~L-------~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.++++.+++ ..++.+++.+.| ++..==+|-.++.|+..|+|.+..
T Consensus 38 IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 38 LLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456666653 667877777766 366778999999999999999983
No 387
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=28.60 E-value=37 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=16.8
Q ss_pred cHHHHHhHhccchhhhhhHHH
Q psy8797 82 DLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 82 dL~~aa~~L~v~kRRiYDI~N 102 (122)
.+.++|+.+||++--+..|+|
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 577889999988877777766
No 388
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=28.55 E-value=1.3e+02 Score=22.66 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=37.3
Q ss_pred CCCcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCce
Q psy8797 77 PQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNI 118 (122)
Q Consensus 77 p~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~ 118 (122)
.++.+++.++=+.+|++|+..-=|..-|...|+..|.+-.++
T Consensus 213 ~~~~it~a~~Rd~lg~SRK~aIplLE~~Dr~g~TrR~gd~Rv 254 (258)
T 1lva_A 213 STGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRVGDKRV 254 (258)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred hcCCcCHHHHHHHhCCcHHHHHHHHHHHhhcCceeeeCCEEe
Confidence 358899999999999999999999999999999999865444
No 389
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=28.21 E-value=54 Score=22.28 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.|..--+++|.+..=.-++++++|+..||.+.-||
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y 48 (210)
T 3vib_A 14 HLMLAALETFYRKGIARTSLNEIAQAAGVTRDALY 48 (210)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHH
Confidence 35666778887776677899999999999998888
No 390
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=28.04 E-value=16 Score=28.00 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceee
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEK 112 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K 112 (122)
+.+.++.. +.+...++|+.+++.+--++-.+++|+..|+|..
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35555653 4578889999999999999999999999999987
No 391
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=28.03 E-value=1.1e+02 Score=21.05 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhc-----c-------chhhhhhHHHhhhhccceeeccCCceee
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLD-----V-------QKRRIYDITNVLEGIGILEKKSKNNIQC 120 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~-----v-------~kRRiYDI~NVLE~igLI~K~~Kn~~~W 120 (122)
|..--.+++.++.+.++.+++-.++|+.|. + ..+||+.=+++-....+|......-|.|
T Consensus 152 Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~~~~~i~~~~~~Gy~~ 222 (225)
T 1kgs_A 152 LTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVA 222 (225)
T ss_dssp CCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTTEEEE
T ss_pred cCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhCCCCCCeEEEEcCcceEE
Confidence 433445688888899999999999999996 4 4555555555433334455444434443
No 392
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.89 E-value=36 Score=19.41 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.0
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+|+.+..|+.|.|
T Consensus 17 lsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 6789999999999988888765
No 393
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.77 E-value=32 Score=24.06 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCCCcccHHHHHhHhcc---chhh-hhhHHHh
Q psy8797 66 TKKFVKLLQSSPQGVVDLNVASESLDV---QKRR-IYDITNV 103 (122)
Q Consensus 66 t~kFi~ll~~sp~~~idL~~aa~~L~v---~kRR-iYDI~NV 103 (122)
=++++++|. ++.++..++|..|++ .-+- +||-+..
T Consensus 13 Re~Ii~lL~---~~plta~ei~~~l~i~~~~~ke~Vy~hLeH 51 (105)
T 2gmg_A 13 REKIIELLL---EGDYSPSELARILDMRGKGSKKVILEDLKV 51 (105)
T ss_dssp HHHHHHHTT---TSCBCTTHHHHSSCCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 367888887 678999999999999 5566 7765443
No 394
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=27.76 E-value=37 Score=19.26 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=18.7
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+++.+..|+.|.|
T Consensus 15 lsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 6789999999999888887765
No 395
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.30 E-value=24 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+..-..+++.+.+-.-++++++|++.||.+.-||
T Consensus 8 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 41 (189)
T 3geu_A 8 IIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLY 41 (189)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHT
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHH
Confidence 4455667776655556899999999999998888
No 396
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=26.90 E-value=44 Score=22.45 Aligned_cols=35 Identities=6% Similarity=-0.023 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+....+++|.+..- -+.++++|+..||.+--||
T Consensus 19 ~~Il~aA~~lf~~~G~-~~s~~~Ia~~agvs~~t~Y 53 (199)
T 2rek_A 19 DRIIEAAAAEVARHGA-DASLEEIARRAGVGSATLH 53 (199)
T ss_dssp HHHHHHHHHHHHHHGG-GCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCCchHHHH
Confidence 3466667777776544 6899999999999998888
No 397
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=26.86 E-value=37 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.5
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.++|.+..|+.|-|
T Consensus 24 ltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 24 YSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 7889999999999999988865
No 398
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=26.85 E-value=36 Score=22.81 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=32.7
Q ss_pred hhcCCCCCCCCCCccCCCccccccCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHhhCCCCcccHHHH
Q psy8797 20 RRLNLDQDDEESPFKTPKSVKKMRVNPPTTPAKEKGTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVA 86 (122)
Q Consensus 20 r~~~l~~~~~~~~~~tp~~~~~~~~~~~~~~k~~~~~R~~kSLg~Lt~kFi~ll~~sp~~~idL~~a 86 (122)
-+|+|+.+..+|.+.++.|...+....| + .+.+.++|.++|+..++-..+
T Consensus 10 ~~ld~~~EerVpVi~~~tG~~l~G~~AP---~--------------~k~L~~WLk~nP~y~vdP~~~ 59 (83)
T 2dl6_A 10 NHLDVDLETRIPVINKVDGTLLVGEDAP---R--------------RAELEMWLQGHPEFAVDPRFL 59 (83)
T ss_dssp CCCCCCTTSBCCEECSSSCCEECGGGSC---B--------------STTHHHHHHHCTTSCBCHHHH
T ss_pred CcccCCCCcceeeEeCCCCccccCCCch---h--------------HhHHHHHHhHCCCCEeCcchh
Confidence 4567777666888888888764332222 1 233567889999998885544
No 399
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=26.83 E-value=83 Score=21.46 Aligned_cols=36 Identities=6% Similarity=0.045 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+..--+++|.+..=.-++++++|+..||.|.-||
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY 49 (219)
T 2w53_A 14 EGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVY 49 (219)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHh
Confidence 456666777777766667899999999999988888
No 400
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=26.79 E-value=37 Score=18.78 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.6
Q ss_pred ccHHHHHhHhccchhhhhhHHHhhhhccc
Q psy8797 81 VDLNVASESLDVQKRRIYDITNVLEGIGI 109 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~NVLE~igL 109 (122)
+.+.++|..|++...+ ++..|...|+
T Consensus 3 ~rv~~lAkel~~~~k~---l~~~l~~~g~ 28 (49)
T 1nd9_A 3 VTIKTLAAERQTSVER---LVQQFADAGI 28 (49)
T ss_dssp ECTTHHHHHHSSSHHH---HHHHHHHHTS
T ss_pred ccHHHHHHHHCcCHHH---HHHHHHHcCC
Confidence 4567899999997775 5556677787
No 401
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=26.77 E-value=37 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=24.3
Q ss_pred HhHhccchhhhhhHHHhhhhccceeec
Q psy8797 87 SESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 87 a~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++.|+|+..++.||++-|..=|+|.=.
T Consensus 23 ~e~l~Ise~~~~~il~~L~d~GyI~Gv 49 (102)
T 2hgc_A 23 ENDIGVTEDQFDDAVNFLKREGYIIGV 49 (102)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSEECC
T ss_pred HHhcCCCHHHHHHHHHHHHHCCCccce
Confidence 689999999999999999999998643
No 402
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=26.64 E-value=24 Score=23.68 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
..+..-.++++.+..-.-+.++++|+..||.+.-||-
T Consensus 17 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 53 (215)
T 3e7q_A 17 ALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINH 53 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 4466677788877655678999999999999998883
No 403
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=26.54 E-value=87 Score=23.73 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=43.7
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 59 DTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 59 ~kSLg~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
+.++.....+.++++.. .+.++..++|..|+...=|.-++++.+|.-|++=+-
T Consensus 149 ~~~~~~~~~~il~~~~~--~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 149 SHKEEEMVASALETVSE--KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp TCCGGGGHHHHHHHHHH--TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCchHHHHHHHHHHHHH--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45666667777777775 466899999999999999999999999999988554
No 404
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=26.47 E-value=40 Score=19.76 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.0
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+||.+.-|+.|.|
T Consensus 22 lsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 22 KTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 6788999999999888888766
No 405
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=26.29 E-value=14 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=0.0
Q ss_pred cccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 80 VVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+...++|..||+.+.-+.-+++-|+.-|+|+...
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~ 198 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEKHG 198 (213)
T ss_dssp -----------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcC
Confidence 46688999999999999999999999999998764
No 406
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.29 E-value=41 Score=23.03 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+...=+++|.+..=.-++++++|+..||.+.-||
T Consensus 15 ~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY 49 (202)
T 2i10_A 15 VALQTAMELFWRQGYEGTSITDLTKALGINPPSLY 49 (202)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHH
Confidence 35555566666655566899999999999999998
No 407
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=26.22 E-value=61 Score=22.11 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+...-+++|.+..=.-++++++|+..||.+.-||
T Consensus 16 ~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY 50 (211)
T 3bhq_A 16 EIIQAATAAFISKGYDGTSMEEIATKAGASKQTVY 50 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 35555667777665567899999999999999988
No 408
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.21 E-value=46 Score=20.93 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccc
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGI 109 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igL 109 (122)
..+.++... .-..+.++|..+||.+.-||-++.-...-|.
T Consensus 13 ~~v~~~~~~--~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 13 DAVALYENS--DGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp HHHHHHTTG--GGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred HHHHHHHHc--CCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 455555321 1368999999999999999999988776443
No 409
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=26.18 E-value=37 Score=22.39 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.4
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+||.+..|++|.|
T Consensus 28 ltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 28 MSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 7899999999999999999887
No 410
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=26.12 E-value=52 Score=22.52 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.|..-.++++.+..-.-++++++|+..||.+--||
T Consensus 16 ~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y 50 (198)
T 3cjd_A 16 KLIDLAEAQIEAEGLASLRARELARQADCAVGAIY 50 (198)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHH
Confidence 46677888888877778999999999999998888
No 411
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=25.86 E-value=54 Score=19.56 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.4
Q ss_pred CcccHHHHHhHhccchhhhhhH
Q psy8797 79 GVVDLNVASESLDVQKRRIYDI 100 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI 100 (122)
...+..++|+.|+++..+++-+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~ 50 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQI 50 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 4589999999999976666553
No 412
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=25.80 E-value=62 Score=22.03 Aligned_cols=35 Identities=3% Similarity=0.035 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
.+..-.+++|.+..=.-++++++|+..||.|--||
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY 52 (199)
T 3crj_A 18 EIMQATYRALREHGYADLTIQRIADEYGKSTAAVH 52 (199)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHh
Confidence 45566777887766667899999999999988887
No 413
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=25.68 E-value=97 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=33.6
Q ss_pred CCCcccHHHHHhHh--ccchhhhhhHHHhhhhccceeeccC
Q psy8797 77 PQGVVDLNVASESL--DVQKRRIYDITNVLEGIGILEKKSK 115 (122)
Q Consensus 77 p~~~idL~~aa~~L--~v~kRRiYDI~NVLE~igLI~K~~K 115 (122)
.++++...++|+.+ +|+-==|.--.+.||..|+|.|...
T Consensus 33 ~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~Hg 73 (338)
T 1stz_A 33 NKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 73 (338)
T ss_dssp HCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred cCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccC
Confidence 36789999999999 8987777778899999999998744
No 414
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=25.17 E-value=44 Score=21.93 Aligned_cols=37 Identities=3% Similarity=0.102 Sum_probs=26.5
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhh
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEG 106 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~ 106 (122)
..|.++... +.....++|..|||.+--||+|++--+.
T Consensus 15 ~iv~~~~~~--g~~~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 15 RIIQEVEEN--PDLRKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp HHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred HHHHHHHHC--CCCcHHHHHHHhCCCHHHHHHHHhchhh
Confidence 355555443 3345668999999999999999885544
No 415
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=24.85 E-value=1.3e+02 Score=19.83 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=29.8
Q ss_pred HHHHhhCCCCcccHHHHHhHh---c--cch-hhhhhHHHhhhhccceeec
Q psy8797 70 VKLLQSSPQGVVDLNVASESL---D--VQK-RRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 70 i~ll~~sp~~~idL~~aa~~L---~--v~k-RRiYDI~NVLE~igLI~K~ 113 (122)
+.++...|....+|....... . +.. --||-+++-||.-|+|++.
T Consensus 19 L~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 19 LLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 444555554444444333322 3 788 9999999999999999876
No 416
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.80 E-value=48 Score=19.86 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHH
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~N 102 (122)
.+..++-.+.... -++..++|+.+|+.+..|+.|.|
T Consensus 12 ~~~~~l~~~r~~~---glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 12 QLANAMKLVRQQN---GWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHHHHHHHHHT---TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCHHHHHHHhCCCHHHHHHHHc
Confidence 3444444444432 26889999999999998888876
No 417
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=24.66 E-value=1.2e+02 Score=20.84 Aligned_cols=59 Identities=10% Similarity=-0.052 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhHhc-----c-------chhhhhhHHHhhhhccceeeccCCceee
Q psy8797 62 LGLLTKKFVKLLQSSPQGVVDLNVASESLD-----V-------QKRRIYDITNVLEGIGILEKKSKNNIQC 120 (122)
Q Consensus 62 Lg~Lt~kFi~ll~~sp~~~idL~~aa~~L~-----v-------~kRRiYDI~NVLE~igLI~K~~Kn~~~W 120 (122)
|..-=.+++.++.+.++.+++-.++|+.|. + ..+||+.=+++=....+|......-|.|
T Consensus 160 Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~~~~~i~~~~g~GY~l 230 (233)
T 1ys7_A 160 LTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVL 230 (233)
T ss_dssp CCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC--CCCEEEETTTEEEE
T ss_pred cCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhccCCCCCeEEEeCCcceEE
Confidence 444446688889999999999999999996 4 4555555555433334555544444443
No 418
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.24 E-value=46 Score=19.28 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=18.8
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+|+.+..|+.+.|
T Consensus 24 ~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 24 RTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 6789999999999888887765
No 419
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.02 E-value=47 Score=19.18 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=18.9
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+|+.+..|+.+.|
T Consensus 19 ls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 19 IRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 6889999999999888887765
No 420
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=23.97 E-value=1.1e+02 Score=23.98 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeecc
Q psy8797 67 KKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKS 114 (122)
Q Consensus 67 ~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~ 114 (122)
.+.++++.. ++.++-.++|+.+++++=-+..|++-|+.-|+|....
T Consensus 19 ~~il~~l~~--~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 19 GAVYRLIDQ--LGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHS--SCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeec
Confidence 346777775 4668999999999999999999999999999998753
No 421
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=23.74 E-value=47 Score=19.70 Aligned_cols=22 Identities=9% Similarity=0.401 Sum_probs=18.7
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+|+.+..|+.|.|
T Consensus 16 lsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 16 LTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 6788999999999888887765
No 422
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=23.69 E-value=1.2e+02 Score=20.83 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHhHh
Q psy8797 61 SLGLLTKKFVKLLQSSPQGVVDLNVASESL 90 (122)
Q Consensus 61 SLg~Lt~kFi~ll~~sp~~~idL~~aa~~L 90 (122)
.|..--..++.++.+.++..++-.++|+.|
T Consensus 156 ~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~l 185 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185 (230)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHH
T ss_pred ecCHHHHHHHHHHHhCCCceEcHHHHHHHh
Confidence 344444667888889999999999999998
No 423
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.51 E-value=1.2e+02 Score=17.98 Aligned_cols=21 Identities=5% Similarity=0.089 Sum_probs=14.9
Q ss_pred cHHHHHhHhccchhhhhhHHH
Q psy8797 82 DLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 82 dL~~aa~~L~v~kRRiYDI~N 102 (122)
...++|+.+|+.+.-|+.|-|
T Consensus 29 sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHc
Confidence 667788888877776666654
No 424
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.49 E-value=43 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
+...-.++|.+..=.-++++++|+..||.|.-||
T Consensus 17 Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY 50 (200)
T 2hyj_A 17 ILGRAAEIASEEGLDGITIGRLAEELEMSKSGVH 50 (200)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHH
Confidence 4455566776655567899999999999998888
No 425
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=23.40 E-value=49 Score=18.97 Aligned_cols=22 Identities=0% Similarity=-0.007 Sum_probs=19.0
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+|+.+..|+.|.|
T Consensus 27 ~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 27 LSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHC
Confidence 7889999999999888887765
No 426
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.20 E-value=48 Score=20.22 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHH
Q psy8797 65 LTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 65 Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~N 102 (122)
+..++-++.... -+...++|+.+|+.+..|.+|.|
T Consensus 19 ~~~~l~~~r~~~---glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 19 LLIVLQEHLRNS---GLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHHHHTT---TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHCcCHHHHHHHHc
Confidence 444444444432 36889999999999888888776
No 427
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=23.19 E-value=1.7e+02 Score=19.49 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
..+-++.++.|.++ +.++...++|+.+|+.|.-+-=++.-|-.=|.|.-.
T Consensus 18 ~d~eekVLe~Lkea-G~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 18 GHLEQRILQVLTEA-GSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHHHHH-TSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 45678899999886 668999999999999999998888888877777655
No 428
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.06 E-value=50 Score=19.17 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=19.3
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+|+.+..|+.|.|
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 24 VSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
Confidence 7889999999999988888765
No 429
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=22.72 E-value=50 Score=19.68 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=19.6
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+|+.+..|+.|-|
T Consensus 25 lsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 25 MTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHhCcCHHHHHHHHC
Confidence 7899999999999999888865
No 430
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=22.64 E-value=18 Score=28.55 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCcccHHHHHhHhccchhhhhhHHHhhhhccceeec
Q psy8797 78 QGVVDLNVASESLDVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 78 ~~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
.+.+...++|+.|++++.-+-=.++.||.-|+|++.
T Consensus 32 ~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~ 67 (345)
T 2o0m_A 32 MQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPS 67 (345)
T ss_dssp ------------------------------------
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 456899999999999999999999999999999844
No 431
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.51 E-value=47 Score=19.33 Aligned_cols=22 Identities=5% Similarity=0.161 Sum_probs=18.9
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
++..++|+.+|+.+-.|+.|.|
T Consensus 21 ~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 21 LTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 7889999999998888887765
No 432
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=22.38 E-value=88 Score=21.82 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.6
Q ss_pred ccchhhhhhHHHhhhhccceeec
Q psy8797 91 DVQKRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 91 ~v~kRRiYDI~NVLE~igLI~K~ 113 (122)
++..--||-+++-||.-|+|++.
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~ 95 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSY 95 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcChhHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999876
No 433
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=22.33 E-value=56 Score=22.11 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=24.7
Q ss_pred HHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 66 TKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 66 t~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..-=+++|.+..=.-++++++|+..||.+.-||
T Consensus 16 l~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY 48 (194)
T 2nx4_A 16 TAAAWRLIAARGIEAANMRDIATEAGYTNGALS 48 (194)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 333455666555556899999999999988888
No 434
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=22.16 E-value=86 Score=22.18 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=27.9
Q ss_pred cHHHHHhHhccc-hhhhhhHHHhhhhccceeec
Q psy8797 82 DLNVASESLDVQ-KRRIYDITNVLEGIGILEKK 113 (122)
Q Consensus 82 dL~~aa~~L~v~-kRRiYDI~NVLE~igLI~K~ 113 (122)
...++|+.+|+. +--++.+.|-|+..|.+...
T Consensus 27 s~~elA~~lgiss~~tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 27 TRAEIAQRLGFRSPNAAEEHLKALARKGVIEIV 59 (202)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEEC
T ss_pred cHHHHHHHhCCCChHHHHHHHHHHHHCCCceeC
Confidence 789999999998 88999999999988877654
No 435
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=22.09 E-value=1.1e+02 Score=21.81 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=34.1
Q ss_pred HHHHHHhhCCCCcccHHHHHhHhc-cchhhhhhHHHhhhhcccee
Q psy8797 68 KFVKLLQSSPQGVVDLNVASESLD-VQKRRIYDITNVLEGIGILE 111 (122)
Q Consensus 68 kFi~ll~~sp~~~idL~~aa~~L~-v~kRRiYDI~NVLE~igLI~ 111 (122)
+.+.+|. ++.....++|+.|+ +.+=-+|-=+++|+..|||+
T Consensus 27 ~il~~L~---~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~ 68 (182)
T 4g6q_A 27 RITQLLI---GRSLTTRELAELLPDVATTTLYRQVGILVKAGVLM 68 (182)
T ss_dssp HHHHHTT---TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeE
Confidence 4555554 45678999999996 89999999999999999996
No 436
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=21.96 E-value=1.2e+02 Score=19.38 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=18.5
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+||.+..|+.|-|
T Consensus 42 ltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 42 MTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHC
Confidence 6788999999998888887765
No 437
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=21.62 E-value=41 Score=27.63 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=26.4
Q ss_pred CcccHHHHHhHhccchhhhhhHHHhhhhccceeeccCCcee
Q psy8797 79 GVVDLNVASESLDVQKRRIYDITNVLEGIGILEKKSKNNIQ 119 (122)
Q Consensus 79 ~~idL~~aa~~L~v~kRRiYDI~NVLE~igLI~K~~Kn~~~ 119 (122)
+..+...+|+.||+. +..||.+|+|+..+-+.|.
T Consensus 224 g~~~~~~la~~lgi~-------v~~L~~~gli~~~~~~~~~ 257 (324)
T 3qyf_A 224 GYTLSEKRAEELGIP-------VRLLEAKMLVERKGEDAYR 257 (324)
T ss_dssp CSEEEHHHHHHTTCC-------HHHHHHTTSEEEETTTEEE
T ss_pred CCCCHHHHHHHhCCC-------HHHHHHCCCeEecCCCcee
Confidence 345667899999998 4499999999998655553
No 438
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=21.54 E-value=34 Score=22.67 Aligned_cols=36 Identities=8% Similarity=-0.093 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhh
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYD 99 (122)
.+..-.++++.+..-.-+.++++|+..||.+--||-
T Consensus 11 ~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~ 46 (186)
T 2jj7_A 11 NILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASY 46 (186)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhh
Confidence 345556677766544568999999999999999884
No 439
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.23 E-value=85 Score=21.32 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..|..--+++|.+..=.-+.++++|+..||.+.-||
T Consensus 12 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY 47 (203)
T 2np5_A 12 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQ 47 (203)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHH
Confidence 345566667777665566899999999999888887
No 440
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=21.00 E-value=33 Score=24.47 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhh
Q psy8797 63 GLLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIY 98 (122)
Q Consensus 63 g~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiY 98 (122)
..+..-.++++.+..-.-++++++|+++||.+--||
T Consensus 7 ~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tlY 42 (207)
T 2vpr_A 7 EQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLY 42 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHH
Confidence 345666777877655556899999999999999988
No 441
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.92 E-value=1.3e+02 Score=17.33 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhHhccchhhhhhHHHh-hhhccc
Q psy8797 64 LLTKKFVKLLQSSPQGVVDLNVASESLDVQKRRIYDITNV-LEGIGI 109 (122)
Q Consensus 64 ~Lt~kFi~ll~~sp~~~idL~~aa~~L~v~kRRiYDI~NV-LE~igL 109 (122)
.--+..+.++.+ -.+..++|+.|++....+|..++- ++-+++
T Consensus 14 ~~e~~il~~~~~----g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 14 KREREVFELLVQ----DKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp HHHHHHHHHHTT----TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 334455555422 248999999999987777655443 444444
No 442
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.87 E-value=1.1e+02 Score=17.91 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=15.6
Q ss_pred cccHHHHHhHhccchhhhhh
Q psy8797 80 VVDLNVASESLDVQKRRIYD 99 (122)
Q Consensus 80 ~idL~~aa~~L~v~kRRiYD 99 (122)
-.+..++|+.|++..+.++-
T Consensus 31 g~s~~eIA~~l~is~~tV~~ 50 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEV 50 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHH
Confidence 36889999999997665553
No 443
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=20.16 E-value=34 Score=22.27 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=12.7
Q ss_pred hHHHhhhhccceeec
Q psy8797 99 DITNVLEGIGILEKK 113 (122)
Q Consensus 99 DI~NVLE~igLI~K~ 113 (122)
||-||||-||.++.-
T Consensus 22 ~VK~iLeyIG~~e~~ 36 (69)
T 2zdj_A 22 EVKAILEYIGSEEEP 36 (69)
T ss_dssp HHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhccccCC
Confidence 788999999988753
No 444
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.03 E-value=62 Score=19.34 Aligned_cols=22 Identities=5% Similarity=0.235 Sum_probs=18.5
Q ss_pred ccHHHHHhHhccchhhhhhHHH
Q psy8797 81 VDLNVASESLDVQKRRIYDITN 102 (122)
Q Consensus 81 idL~~aa~~L~v~kRRiYDI~N 102 (122)
+...++|+.+||.+..|+.|.|
T Consensus 26 ltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 26 LSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCHHHHHHHhCcCHHHHHHHHc
Confidence 6788999999998888877765
Done!