RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8797
(122 letters)
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix,
DNA-binding domain, cell cycle, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Length = 76
Score = 92.7 bits (230), Expect = 2e-26
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 6/77 (7%)
Query: 46 PPTTPAKEKGTRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDV-QKRRIYDITNVL 104
PP TP +R++ SLGLLT KFV LLQ + GV+DL +A+++L V QKRRIYDITNVL
Sbjct: 1 PPGTP-----SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVL 55
Query: 105 EGIGILEKKSKNNIQCK 121
EGIG++EKKSKN+IQ K
Sbjct: 56 EGIGLIEKKSKNSIQWK 72
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.020
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 42 MRVNPPTTPAKEK-GTR-YDTS------LGLLTKKFVKLLQSSPQGVVDLN 84
M N EK G R + LGLLT + V+L Q SP + DLN
Sbjct: 679 MSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPV-MADLN 728
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding
domain, cell cycle, transcription/DNA complex; HET: DNA;
2.60A {Homo sapiens} SCOP: a.4.5.17
Length = 95
Score = 29.7 bits (66), Expect = 0.097
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 94 KRRIYDITNVLEGIGILEKKSKN 116
+RR+YD NVL + I+ K+ K
Sbjct: 61 RRRVYDALNVLMAMNIISKEKKE 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.5
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 28/85 (32%)
Query: 8 RLKLKFHSNMVKRRLNLDQDDEESPFKTPKSVKKMRVNPPTTPAKEKGTRYDTSLGLLTK 67
+L+ +F+ + + DDE PTTPA E ++ LG
Sbjct: 32 QLQEQFNKILPEPTEGFAADDE-----------------PTTPA-ELVGKF---LG---- 66
Query: 68 KFV-KLLQSSPQGVVDLNVASESLD 91
+V L++ S G D V + L
Sbjct: 67 -YVSSLVEPSKVGQFD-QVLNLCLT 89
>3ebk_A Allergen BLA G 4; beta barrel, cockroach, glycoprotein, secreted;
1.90A {Blattella germanica}
Length = 176
Score = 26.6 bits (58), Expect = 2.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 7 IRLKLKFHSNMVKRRLNLDQDDEESPFKTPKSV 39
IR + KF N + +D +D+ F P SV
Sbjct: 70 IRGRTKFEGN----KFTIDYNDKGKAFSAPYSV 98
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 26.4 bits (59), Expect = 2.4
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 80 VVDLNVASESLDV---QKRRIYDITNVLEGIGILE 111
VD+++ LD+ D+ ++ L+
Sbjct: 39 AVDISLPFGDLDMYLSGNTHSQDLADISNASDRLD 73
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle,
signaling protein; 2.60A {Escherichia coli} SCOP:
h.4.5.1
Length = 227
Score = 25.7 bits (57), Expect = 4.0
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 95 RRIYDITNVLEGI 107
++I DI +V++GI
Sbjct: 66 QKIADIISVIDGI 78
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam
antibiotic, oxygenase, penicillin biosynthesis,
oxidoreductase, iron; HET: ASV; 1.15A {Emericella
nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A*
1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A*
1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A*
1w06_A* 1w3v_A* 1w3x_A* ...
Length = 331
Score = 25.4 bits (56), Expect = 5.1
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 22 LNLDQDDEESPFKTPKSVKKMRVN--PPTTPAKEKGTRYDTSLGLL 65
L +++ FK ++ + + P P E + L
Sbjct: 164 LGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKL 209
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP
domain, TSR receptor, fusion; 2.65A {Archaeoglobus
fulgidus}
Length = 341
Score = 25.4 bits (56), Expect = 5.9
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 95 RRIYDITNVLEGI 107
++I DI +V++GI
Sbjct: 146 QKIADIISVIDGI 158
>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal
helix, structural genomics protein structure
initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa}
SCOP: d.129.3.7
Length = 157
Score = 24.9 bits (54), Expect = 7.3
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 43 RVNPPTTPAKEKGTRYDTSLGLLTK-----KFVKLLQSSPQGVVDLNVASESLDVQKRRI 97
+VN T R GL+ + FV L+ + + D RR+
Sbjct: 8 QVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVVGLERF-------EILVDDGDRLHRRL 60
Query: 98 Y 98
Y
Sbjct: 61 Y 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.361
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,703,739
Number of extensions: 85814
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 15
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.5 bits)