RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8797
         (122 letters)



>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 92.9 bits (231), Expect = 6e-27
 Identities = 45/67 (67%), Positives = 57/67 (85%), Gaps = 1/67 (1%)

Query: 56  TRYDTSLGLLTKKFVKLLQSSPQGVVDLNVASESLDV-QKRRIYDITNVLEGIGILEKKS 114
           +R++ SLGLLT KFV LLQ +  GV+DL +A+++L V QKRRIYDITNVLEGIG++EKKS
Sbjct: 1   SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 60

Query: 115 KNNIQCK 121
           KN+IQ K
Sbjct: 61  KNSIQWK 67


>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 30.8 bits (70), Expect = 0.008
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 94  KRRIYDITNVLEGIGILEKKSKN 116
           +RR+YD  NVL  + I+ K+ K 
Sbjct: 53  RRRVYDALNVLMAMNIISKEKKE 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,595
Number of extensions: 16405
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 7
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)