BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8798
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus
GN=Fip1l1 PE=1 SV=1
Length = 536
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
G+IN E +LD EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 144 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187
>sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1
PE=2 SV=1
Length = 588
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
G+IN E +LD EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 130 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 173
>sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1
PE=1 SV=1
Length = 581
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
G+IN E +LD EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 144 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187
>sp|Q6C784|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=FIP1 PE=3 SV=1
Length = 221
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 32 PKEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGA 91
PKE+S+ E P P K + E++G ++ E NL+ EDKPWR PGA
Sbjct: 95 PKEESASEE---------RPQPAAKMPGIDIEKVGMLDGKPITEHNLEDFEDKPWRMPGA 145
Query: 92 DITDYFNYGFTEETWRAH 109
DITDYFNYGF E TW A+
Sbjct: 146 DITDYFNYGFDEFTWMAY 163
>sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1
PE=1 SV=1
Length = 594
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
G+IN E +LD EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 145 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 188
>sp|Q5XJD3|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1
PE=1 SV=1
Length = 570
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 56 KFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
K + E G+IN E +++ E+KPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 144 KVKGVDLEAPGSINGVPVLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWKAY 197
>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1
Length = 344
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 61 EFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
+ + + TI+ E +L+ +DKPWRKPGADI+DYFNYGF E TW A+
Sbjct: 106 DIDAVPTIDGKNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAAY 154
>sp|Q6BGR9|FIP1_DEBHA Pre-mRNA polyadenylation factor FIP1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=FIP1 PE=3 SV=2
Length = 328
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 75 EFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
+ +L++L+DKPWR PGADI+DYFNYGF E TW A+
Sbjct: 149 QVDLEKLKDKPWRFPGADISDYFNYGFDEFTWTAY 183
>sp|Q4IF44|FIP1_GIBZE Pre-mRNA polyadenylation factor FIP1 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FIP1
PE=3 SV=2
Length = 325
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 75 EFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
+ N+D+ DKPWRKPG DI+DYFNYGF E TW +
Sbjct: 144 QVNIDEENDKPWRKPGTDISDYFNYGFDEFTWALY 178
>sp|Q751K8|FIP1_ASHGO Pre-mRNA polyadenylation factor FIP1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=FIP1 PE=3 SV=1
Length = 323
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 26/26 (100%)
Query: 81 LEDKPWRKPGADITDYFNYGFTEETW 106
L++KPWR+PGA+++DYFNYGFTEETW
Sbjct: 179 LKEKPWRQPGANLSDYFNYGFTEETW 204
>sp|Q6CPC3|FIP1_KLULA Pre-mRNA polyadenylation factor FIP1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=FIP1 PE=3 SV=1
Length = 295
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 5/37 (13%)
Query: 81 LEDKPWRKPGADITDYFNYGFTEETW-----RAHHMS 112
L++KPWR+PGA+I+DYFNYGF E+TW R H++
Sbjct: 162 LKEKPWRQPGANISDYFNYGFNEQTWMEYLHRQEHLT 198
>sp|Q5AGC1|FIP1_CANAL Pre-mRNA polyadenylation factor FIP1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=FIP1 PE=3 SV=1
Length = 326
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 63 EQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
E+ G + T + +++ L+ KPWR PG D++DYFNYGF E TW A+
Sbjct: 147 EEDGEGDGTLITQLDIETLKLKPWRAPGVDVSDYFNYGFDEFTWLAY 193
>sp|Q4WM95|FIP1_ASPFU Pre-mRNA polyadenylation factor fip1 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=fip1 PE=3 SV=1
Length = 338
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 82 EDKPWRKPGADITDYFNYGFTEETWRAHHM 111
+DKPWR+PG+DI+DYFNYGF E TW ++ +
Sbjct: 162 DDKPWRRPGSDISDYFNYGFDEFTWASYVL 191
>sp|Q6FJ55|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=FIP1 PE=3 SV=1
Length = 327
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 24/26 (92%)
Query: 81 LEDKPWRKPGADITDYFNYGFTEETW 106
L++KPWR+PGA+I+DYFNYGF E TW
Sbjct: 188 LKEKPWRQPGANISDYFNYGFNEYTW 213
>sp|P45976|FIP1_YEAST Pre-mRNA polyadenylation factor FIP1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FIP1 PE=1 SV=1
Length = 327
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 61 EFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETW 106
+ ++ G +S + + L++KPWR+PGA+++DYFNYGF E TW
Sbjct: 165 DLDKEGIFDSVGITTIDPEVLKEKPWRQPGANLSDYFNYGFNEFTW 210
>sp|Q7SAX8|FIP1_NEUCR Pre-mRNA polyadenylation factor fip-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=fip-1 PE=3 SV=1
Length = 423
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 83 DKPWRKPGADITDYFNYGFTEETWRAH 109
DKPWRKPG D++DYFNYGF E TW +
Sbjct: 209 DKPWRKPGTDLSDYFNYGFDEFTWALY 235
>sp|Q5BAJ7|FIP1_EMENI Pre-mRNA polyadenylation factor fip1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=fip1 PE=3 SV=2
Length = 327
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 84 KPWRKPGADITDYFNYGFTEETWRAH 109
KPWR+PG D+TDYFNYGF E TW ++
Sbjct: 163 KPWRRPGTDLTDYFNYGFDEFTWASY 188
>sp|Q23670|TOP2_CAEEL Probable DNA topoisomerase 2 OS=Caenorhabditis elegans GN=K12D12.1
PE=3 SV=2
Length = 1520
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 33 KEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDK-PWRKPGA 91
KE+ SF LP +S+ N D + ++ ++ +GT S E+ LD + + ++ GA
Sbjct: 619 KEEVSFYSLPEYSEWRMNTDNWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHRIRFKYNGA 678
Query: 92 DITDYFNYGFTEE 104
D + + F+++
Sbjct: 679 DDDNAVDMAFSKK 691
>sp|Q2TBS3|SCP2D_BOVIN SCP2 sterol-binding domain-containing protein 1 OS=Bos taurus
GN=SCP2D1 PE=2 SV=1
Length = 156
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 12 GDQAGQNTGDPNTTEPPQPDPKEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTINST 71
G QAGQ EP P P S F +P F DI+Q+ G V++ I ++ T
Sbjct: 16 GPQAGQFKELGPGREPAVPHPLSLSEFQTVPVFEDISQHVKEVGSQLVKKVNAIFQLDIT 75
Query: 72 ----APHEFNLD 79
H++ +D
Sbjct: 76 KDGKTVHQWTID 87
>sp|P76097|YDCJ_ECOLI Uncharacterized protein YdcJ OS=Escherichia coli (strain K12)
GN=ydcJ PE=4 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 53 PQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHH 110
P+ + +EE+EQ G N T EF + LE W + EET+RA H
Sbjct: 157 PRCRQLLEEYEQQGGFNETQAQEFVQEALETFRWHQSAT---------VDEETYRALH 205
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis
thaliana GN=RF298 PE=2 SV=1
Length = 814
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 1 MAETEDDQWLYGDQAGQNTGDPNTTEPPQ------------PDPKEQSSFSELPAF---S 45
M E +++ +G G G ++ PPQ P P+ +S +E P + S
Sbjct: 1 MVEKQEEMNEFGAVNGGKVGTSSSVSPPQDKGRKNKRKLADPSPQNAASLTEFPRYELHS 60
Query: 46 DIAQNP----DPQGKFTVEEFEQIGTINSTAPH 74
+Q+P D G+ EE + +G + A H
Sbjct: 61 FKSQSPLCENDSNGQLKAEESDSVGWDDPFACH 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,562,000
Number of Sequences: 539616
Number of extensions: 2240039
Number of successful extensions: 4952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 4919
Number of HSP's gapped (non-prelim): 90
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)