Query psy8798
Match_columns 114
No_of_seqs 114 out of 154
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 19:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1049|consensus 100.0 1.6E-30 3.5E-35 226.2 6.4 70 44-113 126-195 (538)
2 PF05182 Fip1: Fip1 motif; In 100.0 9E-30 2E-34 161.2 3.0 41 74-114 1-41 (45)
3 COG5213 FIP1 Polyadenylation f 99.9 2.6E-27 5.7E-32 192.1 2.7 54 60-113 105-158 (266)
4 PF14288 FKS1_dom1: 1,3-beta-g 33.1 7.5 0.00016 28.7 -1.5 41 72-114 71-112 (117)
5 PF09133 SANTA: SANTA (SANT As 20.7 64 0.0014 22.4 1.4 19 93-112 73-91 (93)
6 PF15601 Imm42: Immunity prote 16.9 53 0.0012 24.8 0.4 22 76-97 79-105 (134)
7 PRK13344 spxA transcriptional 14.2 96 0.0021 22.4 1.1 26 87-112 91-116 (132)
8 PRK12559 transcriptional regul 14.2 99 0.0022 22.3 1.2 26 87-112 91-116 (131)
9 PRK05327 rpsD 30S ribosomal pr 13.6 98 0.0021 24.1 1.1 22 92-113 44-76 (203)
10 TIGR01017 rpsD_bact ribosomal 13.5 95 0.0021 24.1 1.0 23 91-113 40-73 (200)
No 1
>KOG1049|consensus
Probab=99.96 E-value=1.6e-30 Score=226.18 Aligned_cols=70 Identities=49% Similarity=0.919 Sum_probs=65.0
Q ss_pred cccccCCCCCCCCcchhhhhcccccCCccceeeCcccCCCCCCCCCCCCCCcccccCCCHHHHHHHHhhc
Q psy8798 44 FSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSS 113 (114)
Q Consensus 44 ~~d~a~~~~~~Gkf~~~d~~~~g~~~G~~i~d~did~~edKPWR~PGADiSDYFNYGFnE~TW~~Yc~kq 113 (114)
.....+...+.||+++.|++..|.|+|++||+||||+||+||||+|||||||||||||||+||++||++|
T Consensus 126 ~~~~~~~a~~kg~~~~~dld~~g~in~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNEeTWk~YC~rQ 195 (538)
T KOG1049|consen 126 VKATNKSAAPKGKMSQVDLDTPGTINGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNEETWKAYCERQ 195 (538)
T ss_pred ccccccccccccCcccccccCCcccCCccceeecHHHhccCcccCCCccchhhhccccCHHHHHHHHHHH
Confidence 4434566777899999999999999999999999999999999999999999999999999999999998
No 2
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=99.96 E-value=9e-30 Score=161.16 Aligned_cols=41 Identities=59% Similarity=1.197 Sum_probs=39.3
Q ss_pred eeeCcccCCCCCCCCCCCCCCcccccCCCHHHHHHHHhhcC
Q psy8798 74 HEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSSI 114 (114)
Q Consensus 74 ~d~did~~edKPWR~PGADiSDYFNYGFnE~TW~~Yc~kq~ 114 (114)
|+||||++++||||+|||||||||||||||+||++||++|.
T Consensus 1 fd~d~d~~~~KPWr~pGaDisDyFNYGf~E~tW~~Y~~kq~ 41 (45)
T PF05182_consen 1 FDVDIDSFEEKPWRKPGADISDYFNYGFNEETWREYCKKQR 41 (45)
T ss_pred CCcChhhhccCCccCCCCChhhhcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999983
No 3
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=99.93 E-value=2.6e-27 Score=192.09 Aligned_cols=54 Identities=41% Similarity=0.814 Sum_probs=52.7
Q ss_pred hhhhcccccCCccceeeCcccCCCCCCCCCCCCCCcccccCCCHHHHHHHHhhc
Q psy8798 60 EEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSS 113 (114)
Q Consensus 60 ~d~~~~g~~~G~~i~d~did~~edKPWR~PGADiSDYFNYGFnE~TW~~Yc~kq 113 (114)
+|++++++++|+.|++|||+.|.+||||+|||||||||||||||+||++||++|
T Consensus 105 id~dke~t~dg~nI~~iD~Esf~dKPWrkPGAdiSDYFNYGFnEfTW~eYc~~Q 158 (266)
T COG5213 105 IDEDKEETEDGQNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQ 158 (266)
T ss_pred ccccccccccCcceeeechhhhccCcccCCCcchhhhhhccchhhHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999998
No 4
>PF14288 FKS1_dom1: 1,3-beta-glucan synthase subunit FKS1, domain-1
Probab=33.09 E-value=7.5 Score=28.72 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=31.2
Q ss_pred cceeeCcccCCCCCCCCCCCCCCcccccC-CCHHHHHHHHhhcC
Q psy8798 72 APHEFNLDQLEDKPWRKPGADITDYFNYG-FTEETWRAHHMSSI 114 (114)
Q Consensus 72 ~i~d~did~~edKPWR~PGADiSDYFNYG-FnE~TW~~Yc~kq~ 114 (114)
||+++=-++... |.+..+|-+++-||. |||.=|..-|-++|
T Consensus 71 PiY~~i~~q~~~--~~~~~~dH~~~~nYDDiNE~FW~~~cl~~l 112 (117)
T PF14288_consen 71 PIYEFIRDQQYS--SVRGEADHSDWRNYDDINEYFWSPECLKRL 112 (117)
T ss_pred HHHHHHHHHhHh--hcCCCCCccccCCCCccHHhhcCHhhHhHh
Confidence 455554443333 889999999999995 99999999888664
No 5
>PF09133 SANTA: SANTA (SANT Associated); InterPro: IPR015216 The SANTA domain (SANT associated) is approximately 90 amino acids in length and is conserved in eukaryotes. It is sometimes found in association with the SANT domain (IPR001005 from INTERPRO, also known as the Myb-like DNA-binding domain) implying a putative function in regulating chromatin remodelling. Sequence analysis has showed that the SANTA domain is likely to form four central beta-sheets with three flanking alpha-helices. Many conserved hydrophobic residues are present which implies a possible role in protein-protein interactions.
Probab=20.70 E-value=64 Score=22.40 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=14.4
Q ss_pred CCcccccCCCHHHHHHHHhh
Q psy8798 93 ITDYFNYGFTEETWRAHHMS 112 (114)
Q Consensus 93 iSDYFNYGFnE~TW~~Yc~k 112 (114)
+.+=|-.||.+. |+.||.+
T Consensus 73 v~~~F~~GFP~~-W~~~~~~ 91 (93)
T PF09133_consen 73 VIKKFMNGFPEN-WEEYINE 91 (93)
T ss_pred HHHHHhcCCCHH-HHHHHHh
Confidence 344577899975 9999976
No 6
>PF15601 Imm42: Immunity protein 42
Probab=16.94 E-value=53 Score=24.81 Aligned_cols=22 Identities=27% Similarity=0.884 Sum_probs=15.7
Q ss_pred eCcccC-CCCCC----CCCCCCCCccc
Q psy8798 76 FNLDQL-EDKPW----RKPGADITDYF 97 (114)
Q Consensus 76 ~did~~-edKPW----R~PGADiSDYF 97 (114)
-|++.+ ...|| ..--.+|+|||
T Consensus 79 WD~~dl~~~ppWg~~i~~~i~~L~~yF 105 (134)
T PF15601_consen 79 WDIEDLSKQPPWGDNISPDITSLSDYF 105 (134)
T ss_pred echhhcccCCCCcccCCCCCCcHHHHh
Confidence 566666 57899 44566788888
No 7
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=14.22 E-value=96 Score=22.37 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=17.0
Q ss_pred CCCCCCCCcccccCCCHHHHHHHHhh
Q psy8798 87 RKPGADITDYFNYGFTEETWRAHHMS 112 (114)
Q Consensus 87 R~PGADiSDYFNYGFnE~TW~~Yc~k 112 (114)
++|=.--.+-.=-||+|+.|+.+.-+
T Consensus 91 kRPIv~~~~~~~iG~~~e~~~~~l~~ 116 (132)
T PRK13344 91 KSPILIDDKRLQVGYKEDDIRAFLPR 116 (132)
T ss_pred eCcEEEeCCEEEeCCCHHHHHHHccH
Confidence 44433223445689999999998754
No 8
>PRK12559 transcriptional regulator Spx; Provisional
Probab=14.18 E-value=99 Score=22.26 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=17.4
Q ss_pred CCCCCCCCcccccCCCHHHHHHHHhh
Q psy8798 87 RKPGADITDYFNYGFTEETWRAHHMS 112 (114)
Q Consensus 87 R~PGADiSDYFNYGFnE~TW~~Yc~k 112 (114)
++|=.--.+-.--||+|+.|+++..+
T Consensus 91 kRPIi~~~~~~~iGf~~e~~~~~l~~ 116 (131)
T PRK12559 91 RRPIMLDEKRLQIGFNDEEIRKFLPR 116 (131)
T ss_pred eCCEEEeCCEEEEcCCHHHHHHHhhH
Confidence 44433333456689999999988755
No 9
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=13.65 E-value=98 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.1
Q ss_pred CCCcc-----------cccCCCHHHHHHHHhhc
Q psy8798 92 DITDY-----------FNYGFTEETWRAHHMSS 113 (114)
Q Consensus 92 DiSDY-----------FNYGFnE~TW~~Yc~kq 113 (114)
-+||| |.||+.|..++.|+.+.
T Consensus 44 k~s~y~~~L~eKQk~~~~Y~~~e~q~~~~~~~a 76 (203)
T PRK05327 44 KLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEA 76 (203)
T ss_pred cccHHHHHHHHHHHhHHHhcCcHHHHHHHHHHH
Confidence 47888 89999999999998754
No 10
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=13.47 E-value=95 Score=24.08 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=19.9
Q ss_pred CCCCcc-----------cccCCCHHHHHHHHhhc
Q psy8798 91 ADITDY-----------FNYGFTEETWRAHHMSS 113 (114)
Q Consensus 91 ADiSDY-----------FNYGFnE~TW~~Yc~kq 113 (114)
.-+||| |.||+.|..++.|+.+.
T Consensus 40 ~k~S~y~~~l~eKQk~~~~Yg~~e~q~~~~~~~a 73 (200)
T TIGR01017 40 KKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEA 73 (200)
T ss_pred CcccHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 358999 89999999999998764
Done!