Query psy8798
Match_columns 114
No_of_seqs 114 out of 154
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 19:33:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p06_A VP4 protein; CIS-cleava 40.5 8.4 0.00029 29.6 0.9 22 73-94 161-186 (194)
2 3bts_E Regulatory protein GAL4 20.9 11 0.00038 21.1 -1.1 13 93-105 8-20 (26)
3 3bbn_P Ribosomal protein S16; 14.7 1.5E+02 0.0051 20.0 3.2 49 38-95 16-65 (88)
4 2vqe_D 30S ribosomal protein S 13.9 63 0.0022 24.1 1.2 23 91-113 49-82 (209)
5 3r8n_D 30S ribosomal protein S 12.8 71 0.0024 24.3 1.2 22 91-112 45-77 (205)
6 3pys_P 30S ribosomal protein S 10.7 32 0.0011 23.2 -1.2 49 38-95 16-68 (83)
7 2lyx_A Uncharacterized protein 10.5 65 0.0022 21.9 0.3 12 87-98 26-37 (87)
8 2kzq_A Envelope glycoprotein E 9.1 72 0.0025 18.9 0.1 8 6-13 19-26 (36)
9 3pym_A GAPDH 3, glyceraldehyde 8.9 1.2E+02 0.004 24.7 1.3 28 66-93 65-92 (332)
10 3lvf_P GAPDH 1, glyceraldehyde 8.3 1.3E+02 0.0044 24.6 1.3 28 66-93 67-94 (338)
No 1
>3p06_A VP4 protein; CIS-cleavage, intramolecular acyl-enzyme, ester-linkage, ALP protein, protease, polyprotein processing, acyl-enzyme, HYD; 2.10A {Tellina virus 1}
Probab=40.49 E-value=8.4 Score=29.55 Aligned_cols=22 Identities=45% Similarity=0.816 Sum_probs=14.1
Q ss_pred ceeeCcccC----CCCCCCCCCCCCC
Q psy8798 73 PHEFNLDQL----EDKPWRKPGADIT 94 (114)
Q Consensus 73 i~d~did~~----edKPWR~PGADiS 94 (114)
+.-+.++++ -+||||+|-.-.|
T Consensus 161 lkvvtleqlrqvvgdkpwrkpmvtfs 186 (194)
T 3p06_A 161 LKVVTLEQLRQVVGDKPWRKPMVTFS 186 (194)
T ss_dssp EECCBHHHHHHHHSSCCCSSSCEECC
T ss_pred eeeEEHHHHHHHhcCCcccCceEEee
Confidence 344455544 5899999965444
No 2
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=20.93 E-value=11 Score=21.12 Aligned_cols=13 Identities=38% Similarity=0.812 Sum_probs=10.1
Q ss_pred CCcccccCCCHHH
Q psy8798 93 ITDYFNYGFTEET 105 (114)
Q Consensus 93 iSDYFNYGFnE~T 105 (114)
+-|-|||=|+|+.
T Consensus 8 MDDvyNylFdd~d 20 (26)
T 3bts_E 8 MDDVYNYLFDDED 20 (26)
T ss_pred HHHHHHHhcCccc
Confidence 4578999999864
No 3
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=14.73 E-value=1.5e+02 Score=20.01 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=31.0
Q ss_pred ccccCccccccCCCCCCCCcchhhhhcccccCCcc-ceeeCcccCCCCCCCCCCCCCCc
Q psy8798 38 FSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTA-PHEFNLDQLEDKPWRKPGADITD 95 (114)
Q Consensus 38 f~~~~~~~d~a~~~~~~Gkf~~~d~~~~g~~~G~~-i~d~did~~edKPWR~PGADiSD 95 (114)
||+....+..+ +.-|+| ++.+|.||-.+ -..+|+| .-+=|..-||-.||
T Consensus 16 fYrIVvadsr~---~RDGr~----IE~lG~YnP~~~~~~l~~e--ri~~Wl~~GAqpTd 65 (88)
T 3bbn_P 16 VYRIVAIDVRS---RREGRD----LQKVGFYDPIKSQTYLNVP--AILDFLEKGAQPTE 65 (88)
T ss_dssp CCCCCCEETTS---CSSSCC----SSCCCCBCTTSSCBCCCTT--TSSSSTTSSCEECT
T ss_pred eEEEEEEecCC---CCCCCc----EeEEEeccCCCCceEEcHH--HHHHHHHcCCccCH
Confidence 66665544333 344665 77788887542 1345555 45789999999887
No 4
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=13.85 E-value=63 Score=24.13 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.9
Q ss_pred CCCCcc-----------cccCCCHHHHHHHHhhc
Q psy8798 91 ADITDY-----------FNYGFTEETWRAHHMSS 113 (114)
Q Consensus 91 ADiSDY-----------FNYGFnE~TW~~Yc~kq 113 (114)
.-+||| |.||+.|..++.|+.+.
T Consensus 49 ~k~s~y~~~L~ekqkl~~~Yg~~e~q~~~y~~~a 82 (209)
T 2vqe_D 49 RRPSDYAVRLREKQKLRRIYGISERQFRNLFEEA 82 (209)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 368999 89999999999998753
No 5
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=12.81 E-value=71 Score=24.27 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=19.1
Q ss_pred CCCCcc-----------cccCCCHHHHHHHHhh
Q psy8798 91 ADITDY-----------FNYGFTEETWRAHHMS 112 (114)
Q Consensus 91 ADiSDY-----------FNYGFnE~TW~~Yc~k 112 (114)
.-+||| |+||..|.-|+.|..+
T Consensus 45 ~K~S~y~~qL~eKQklr~~YG~~EkQf~~~~~~ 77 (205)
T 3r8n_D 45 PRLSDYGVQLREKQKVRRIYGVLERQFRNYYKE 77 (205)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 358999 8999999999999864
No 6
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=10.73 E-value=32 Score=23.16 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=29.7
Q ss_pred ccccCccccccCCCCCCCCcchhhhhcccccCCcc----ceeeCcccCCCCCCCCCCCCCCc
Q psy8798 38 FSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTA----PHEFNLDQLEDKPWRKPGADITD 95 (114)
Q Consensus 38 f~~~~~~~d~a~~~~~~Gkf~~~d~~~~g~~~G~~----i~d~did~~edKPWR~PGADiSD 95 (114)
||+.-..+..+ +.-|+| ++.+|.||-.+ ...+|+| .-+=|..-||-.||
T Consensus 16 fYrIVvadsr~---~RdGr~----IE~lG~YnP~~~~~~~i~l~~e--ri~~Wl~~GAqptd 68 (83)
T 3pys_P 16 HYRIVVTDARR---KRDGKY----IEKIGYYDPRKTTPDWLKVDVE--RARYWLSVGAQPTD 68 (83)
T ss_dssp CCCCEEEESSS---CTTCCC----SEECCCBCSSCCSTTCBCCCHH--HHHHHHHTCCCBCS
T ss_pred eEEEEEEecCC---CCCCCc----eeeeeEEcCCCCCCceEEEchH--HHHHHHHCCCcCCH
Confidence 55555444332 334555 67788887654 3445554 34678888888887
No 7
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=10.54 E-value=65 Score=21.88 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=9.2
Q ss_pred CCCCCCCCcccc
Q psy8798 87 RKPGADITDYFN 98 (114)
Q Consensus 87 R~PGADiSDYFN 98 (114)
+-|||+|.||--
T Consensus 26 ~YP~A~I~DY~~ 37 (87)
T 2lyx_A 26 RYPLAQVLFKQK 37 (87)
T ss_dssp TCTTCEECCCEE
T ss_pred HCCCCeEEEEEE
Confidence 458999999853
No 8
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=9.06 E-value=72 Score=18.93 Aligned_cols=8 Identities=50% Similarity=0.908 Sum_probs=6.3
Q ss_pred ccceeecc
Q psy8798 6 DDQWLYGD 13 (114)
Q Consensus 6 ~~~~~~~~ 13 (114)
|-|||||-
T Consensus 19 dvqylyGv 26 (36)
T 2kzq_A 19 DVQYMYGL 26 (36)
T ss_dssp TTTTTSCC
T ss_pred hheeeecc
Confidence 66899983
No 9
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=8.88 E-value=1.2e+02 Score=24.67 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=20.9
Q ss_pred cccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 66 GTINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 66 g~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
-.++|++|.=+...+.++-||..-|+|+
T Consensus 65 l~i~Gk~I~v~~e~dp~~i~w~~~gvDi 92 (332)
T 3pym_A 65 IIVDGKKIATYQERDPANLPWGSSNVDI 92 (332)
T ss_dssp EEETTEEEEEECCSSGGGSCTTTTTCSE
T ss_pred EEECCEEEEEEeecccccCCccccCccE
Confidence 3678988776655556678999889886
No 10
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=8.33 E-value=1.3e+02 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=21.1
Q ss_pred cccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 66 GTINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 66 g~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
-.++|++|.=+...+.++-||..-|+|+
T Consensus 67 l~inGk~I~v~~e~dp~~i~w~~~gvDi 94 (338)
T 3lvf_P 67 FRVNGKEVKSFSEPDASKLPWKDLNIDV 94 (338)
T ss_dssp EEETTEEEEEECCSCGGGSCTTTTTCSE
T ss_pred EEECCEEEEEEEecccccCCccccCCCE
Confidence 3678988776555566678999889886
Done!