Query psy8798
Match_columns 114
No_of_seqs 114 out of 154
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 19:33:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8798.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8798hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1obfo1 c.2.1.3 (O:1-152,O:315 16.6 25 0.0018 23.8 1.4 27 67-93 68-94 (173)
2 d2g82a1 c.2.1.3 (A:1-148,A:311 14.1 15 0.0011 24.9 -0.5 28 66-93 62-89 (168)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 13.7 42 0.003 20.4 1.8 13 98-110 101-113 (114)
4 d3cmco1 c.2.1.3 (O:0-148,O:313 12.8 28 0.002 23.7 0.7 28 66-93 64-91 (171)
5 d1u8fo1 c.2.1.3 (O:3-151,O:316 12.7 40 0.0029 22.9 1.5 28 66-93 65-92 (169)
6 d2b4ro1 c.2.1.3 (O:4-152,O:319 10.0 19 0.0014 24.3 -0.9 29 65-93 63-91 (166)
7 d2z0sa1 b.40.4.5 (A:60-147) S1 9.9 35 0.0026 19.9 0.4 22 79-100 38-59 (88)
8 d1jjcb3 b.40.4.4 (B:39-151) Do 7.5 76 0.0055 20.3 1.3 10 88-97 103-112 (113)
9 d1dssg1 c.2.1.3 (G:1-148,G:313 7.3 28 0.002 23.7 -1.0 29 65-93 62-90 (169)
10 d2uubd1 d.66.1.2 (D:2-209) Rib 6.9 76 0.0055 22.4 1.2 22 91-112 48-80 (208)
No 1
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}
Probab=16.59 E-value=25 Score=23.81 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.1
Q ss_pred ccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 67 TINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 67 ~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
.++|+.|.=+.-...++-||+.-|+|+
T Consensus 68 ~i~g~~i~i~~~~~p~~i~W~~~gvDi 94 (173)
T d1obfo1 68 VVNGDKIRVDANRNPAQLPWGALKVDV 94 (173)
T ss_dssp EETTEEEEEECCSCGGGSCTTTTTCSE
T ss_pred EECCEEEEEEecCCHHHCcccccccce
Confidence 578988888888888899999999885
No 2
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Probab=14.07 E-value=15 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.391 Sum_probs=23.3
Q ss_pred cccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 66 GTINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 66 g~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
-.++|+.|.-+.-...++-||+.-|+|+
T Consensus 62 l~i~g~~I~~~~~~~p~~i~W~~~gvdi 89 (168)
T d2g82a1 62 LYVDGKAIRATAVKDPKEIPWAEAGVGV 89 (168)
T ss_dssp EEETTEEEEEECCSSGGGCCTGGGTEEE
T ss_pred eEecceeEEEEecCChHHCcccccCCce
Confidence 3668998888888888999999888775
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.68 E-value=42 Score=20.43 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.4
Q ss_pred ccCCCHHHHHHHH
Q psy8798 98 NYGFTEETWRAHH 110 (114)
Q Consensus 98 NYGFnE~TW~~Yc 110 (114)
==||+|+.|++..
T Consensus 101 ~iG~~~e~~~~~l 113 (114)
T d1rw1a_ 101 LVGFKPDAYAAAL 113 (114)
T ss_dssp EESCCHHHHHHHH
T ss_pred EECCCHHHHHHHh
Confidence 3699999998764
No 4
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=12.80 E-value=28 Score=23.74 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.5
Q ss_pred cccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 66 GTINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 66 g~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
-.++|+.|.=..-...++-||..-|+|+
T Consensus 64 l~i~g~~i~i~~~~~p~~i~W~~~~vDi 91 (171)
T d3cmco1 64 LVVNGKEIIVKAERDPENLAWGEIGVDI 91 (171)
T ss_dssp EEETTEEEEEECCSSGGGCCTGGGTCCE
T ss_pred EEeCCcceeeEecCCHHHccccccCCcE
Confidence 3568888877777778899999998885
No 5
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=12.65 E-value=40 Score=22.85 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.7
Q ss_pred cccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 66 GTINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 66 g~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
-.++|+.|.=+.-...++-||.+-|+|+
T Consensus 65 l~i~~~~I~~~~~~~p~~i~W~~~~vDi 92 (169)
T d1u8fo1 65 LVINGNPITIFQERDPSKIKWGDAGAEY 92 (169)
T ss_dssp EEETTEEEEEECCSSGGGCCTTTTTCCE
T ss_pred EEECCEEEEEEECCChhhCCccccCCCE
Confidence 3568888887777778899999998885
No 6
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=10.04 E-value=19 Score=24.32 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.2
Q ss_pred ccccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 65 IGTINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 65 ~g~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
.-.++|+.|.=+.-...++-||+.-|+|+
T Consensus 63 ~l~i~~~~I~i~~~~~p~~i~W~~~gvdi 91 (166)
T d2b4ro1 63 FLLIGEKKVSVFAEKDPSQIPWGKCQVDV 91 (166)
T ss_dssp EEEESSCEEEEECCSSGGGCCHHHHTCSE
T ss_pred eEEecCcEEEEEeCCChHHccccccCCCE
Confidence 34668888877777788899999888876
No 7
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=9.90 E-value=35 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=18.0
Q ss_pred ccCCCCCCCCCCCCCCcccccC
Q psy8798 79 DQLEDKPWRKPGADITDYFNYG 100 (114)
Q Consensus 79 d~~edKPWR~PGADiSDYFNYG 100 (114)
.++...+++.+..|++++|+-|
T Consensus 38 se~~~~~~~~~~~~~~~~~~vG 59 (88)
T d2z0sa1 38 QDFLGRPFNPAVDDMQSLLKVG 59 (88)
T ss_dssp HHHHTSCCCTTTTCCTTSSCTT
T ss_pred HHhCcccccccccchhhhcccC
Confidence 3456788888999999999877
No 8
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=7.52 E-value=76 Score=20.31 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=8.8
Q ss_pred CCCCCCCccc
Q psy8798 88 KPGADITDYF 97 (114)
Q Consensus 88 ~PGADiSDYF 97 (114)
.+|+++++||
T Consensus 103 ~~G~~~~e~~ 112 (113)
T d1jjcb3 103 PPGTPLSEAW 112 (113)
T ss_dssp CTTCBGGGGS
T ss_pred CCCCchHHhC
Confidence 4799999998
No 9
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}
Probab=7.35 E-value=28 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=22.7
Q ss_pred ccccCCccceeeCcccCCCCCCCCCCCCC
Q psy8798 65 IGTINSTAPHEFNLDQLEDKPWRKPGADI 93 (114)
Q Consensus 65 ~g~~~G~~i~d~did~~edKPWR~PGADi 93 (114)
.-.++|+.|.=+.-...++-||..-|+|+
T Consensus 62 ~l~ing~~I~~~~~~~p~~i~W~~~gvD~ 90 (169)
T d1dssg1 62 ALVVDGKKITVFNEMKPENIPWSKAGAEY 90 (169)
T ss_dssp EEEETTEEEEEECCSSGGGCCHHHHTCCE
T ss_pred EEEECCEEEEEEecCChHHCCccccCCCE
Confidence 34668888877777778889999888875
No 10
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=6.91 E-value=76 Score=22.43 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.3
Q ss_pred CCCCcc-----------cccCCCHHHHHHHHhh
Q psy8798 91 ADITDY-----------FNYGFTEETWRAHHMS 112 (114)
Q Consensus 91 ADiSDY-----------FNYGFnE~TW~~Yc~k 112 (114)
.-+||| |+||..|.-.+.|..+
T Consensus 48 ~k~S~Yg~qL~EKQKlr~~YGv~EkQfr~~~~~ 80 (208)
T d2uubd1 48 RRPSDYAVRLREKQKLRRIYGISERQFRNLFEE 80 (208)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 468999 8999999999999765
Done!