RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8798
         (114 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 25/84 (29%)

Query: 41  LPAFS---DIAQNPD-PQGKFTVEEFEQIGTINSTAPHEFN-----LDQLEDKPWRKPGA 91
             AF    D     D P+   + EE + I  I S      +        L  K       
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMS--KDAVSGTLRLFWTLLSKQ-----E 76

Query: 92  DITDYF-------NYGFTEETWRA 108
           ++   F       NY F     + 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKT 100


>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
          {Aquifex aeolicus} SCOP: d.27.1.1
          Length = 112

 Score = 27.7 bits (62), Expect = 0.56
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 55 GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITD 95
          GK+     + +GT +       N+   + K W   G +++ 
Sbjct: 31 GKYI----DILGTYDPKRKVLINVYPEKVKEWVLKGVELSH 67


>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
           dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
           SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
          Length = 417

 Score = 25.9 bits (56), Expect = 3.6
 Identities = 5/40 (12%), Positives = 9/40 (22%), Gaps = 2/40 (5%)

Query: 72  APHEFNLDQLEDKPW--RKPGADITDYFNYGFTEETWRAH 109
                N+   +   W        +  Y  Y   E+     
Sbjct: 217 KLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKK 256


>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
           SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
           2q0i_A 3dh8_A*
          Length = 303

 Score = 25.5 bits (56), Expect = 4.7
 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 1/32 (3%)

Query: 5   EDDQWLY-GDQAGQNTGDPNTTEPPQPDPKEQ 35
              + L+ GD  G+         P   D  E 
Sbjct: 171 VRRRRLFCGDALGEFDEAEGVWRPLVFDDMEA 202


>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
           1wk8_A* 1udz_A 1ue0_A
          Length = 186

 Score = 24.8 bits (55), Expect = 6.2
 Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 1/15 (6%)

Query: 50  NP-DPQGKFTVEEFE 63
              D +GK  VE F+
Sbjct: 142 KTVDEEGKLLVEPFK 156


>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
           oxidase/dehydrogenase, CKX, structura genomics, protein
           structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
           thaliana} PDB: 2q4w_A*
          Length = 524

 Score = 24.6 bits (53), Expect = 8.9
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 84  KPWRKPGADITDYFNYGFTEETWRAH 109
               K G D   Y  +  ++E W  H
Sbjct: 467 HWCVKNGIDYKLYLPHYKSQEEWIRH 492


>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
           structural genomics/proteom initiative, RSGI, structural
           genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
           b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
          Length = 821

 Score = 24.8 bits (55), Expect = 9.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 52  DPQGKFTVEEFE 63
           D +GK  VE F+
Sbjct: 344 DEEGKLLVEPFK 355


>1ohg_A Major capsid protein; virus, virus coat protein, virus/viral
           protein, auto- catalytic cross-LINK, icosahedral virus;
           3.45A {Bacteriophage HK97} SCOP: d.183.1.1 PDB: 2frp_A
           2fsy_A 2ft1_A 2fte_A 3ddx_A 2gp1_A 2fs3_A 3e8k_A 1if0_A
          Length = 282

 Score = 24.7 bits (53), Expect = 9.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 1   MAETEDDQWLYGDQAGQNTGDPNTT 25
           +A  E+ Q L GD  G N    N  
Sbjct: 112 LALKEEGQLLNGDGTGDNLEGLNKV 136


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,891,179
Number of extensions: 98839
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 12
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.2 bits)