RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8798
         (114 letters)



>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 25.3 bits (55), Expect = 2.1
 Identities = 3/34 (8%), Positives = 10/34 (29%)

Query: 9   WLYGDQAGQNTGDPNTTEPPQPDPKEQSSFSELP 42
            L  ++  +    P         P+++     + 
Sbjct: 479 LLSRERKPELAEAPLPFAEVISGPEDRRLVLAMD 512


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 467,265
Number of extensions: 19837
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)