Diaphorina citri psyllid: psy879

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKNKKTD
cccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHcccccccccCEEEEECccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccHHccccEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccc
IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSK*****
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
IEKYRPQTFSDIVGNEDTVERLKVFSSSGNVPNIIISGPPGVGKTTTILCLARILLGPSFKDAVLELNASNDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYNKLTDAQLLSKVIEICEKENISHTNDGLEAIVFTAQGDMRQALNNLQSTHNGFGHVTAEYVFKVCDEPHPLAVKEMLLNCVEGNMKDSYKIIHHLYKLGYAPEDIIGNIFRVAKTLDIPEPLKLSIIQEIGNVHLRISEGVNSLLQLSGLLARLCIVGSKNKKTD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Replication factor C subunit 2 The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. This subunit binds ATP.very confidentP35250
Replication factor C subunit 2 The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. This subunit binds ATP.very confidentQ9WUK4
Replication factor C subunit 2 The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. This subunit binds ATP.very confidentP53033

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005663 [CC]DNA replication factor C complexconfidentGO:0043234, GO:0005575, GO:0032991, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0005657, GO:0044424, GO:0043228, GO:0044427, GO:0005694, GO:0043226, GO:0044422
GO:0006283 [BP]transcription-coupled nucleotide-excision repairconfidentGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0051716, GO:0044260, GO:0071704, GO:0044699, GO:0006281, GO:0009987, GO:0006725, GO:0006289, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0044238, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:0006272 [BP]leading strand elongationconfidentGO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901360, GO:0006139, GO:0044260, GO:0071704, GO:0006260, GO:0006261, GO:0022616, GO:1901576, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0046483, GO:0044238, GO:0006271, GO:0044237, GO:0043170, GO:0006259
GO:0005654 [CC]nucleoplasmconfidentGO:0005575, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0005875 [CC]microtubule associated complexconfidentGO:0043234, GO:0005856, GO:0015630, GO:0032991, GO:0005575, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044430, GO:0044424, GO:0043228, GO:0043226, GO:0044422
GO:0000084 [BP]S phase of mitotic cell cycleconfidentGO:0051325, GO:0044699, GO:0000278, GO:0009987, GO:0051329, GO:0008150, GO:0022402, GO:0022403, GO:0044763, GO:0007049, GO:0051320
GO:0005829 [CC]cytosolconfidentGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0006297 [BP]nucleotide-excision repair, DNA gap fillingconfidentGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0051716, GO:0044260, GO:0071704, GO:0044699, GO:0006281, GO:0009987, GO:0006725, GO:0006289, GO:0006974, GO:0006950, GO:0008150, GO:0008152, GO:0046483, GO:0044238, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0044763
GO:0031391 [CC]Elg1 RFC-like complexconfidentGO:0043234, GO:0005575, GO:0032991, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0043228, GO:0044424, GO:0044427, GO:0005694, GO:0043226, GO:0044422
GO:0005515 [MF]protein bindingconfidentGO:0003674, GO:0005488
GO:0032201 [BP]telomere maintenance via semi-conservative replicationconfidentGO:0044238, GO:0060249, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901360, GO:0000723, GO:0006139, GO:0044260, GO:0071840, GO:0016043, GO:0071704, GO:0006260, GO:0006261, GO:0065007, GO:0065008, GO:1901576, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0044763, GO:0010833, GO:0008152, GO:0046483, GO:0006996, GO:0042592, GO:0044699, GO:0051276, GO:0032200, GO:0044237, GO:0043170, GO:0006259, GO:0008150
GO:0005524 [MF]ATP bindingconfidentGO:0043168, GO:0003674, GO:0005488, GO:0030554, GO:0035639, GO:0097159, GO:1901363, GO:0043167, GO:0036094, GO:0032553, GO:0032559, GO:0001883, GO:0032549, GO:0032555, GO:0017076, GO:0000166, GO:0032550, GO:1901265, GO:0001882
GO:0031389 [CC]Rad17 RFC-like complexconfidentGO:0043234, GO:0005575, GO:0032991, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0043228, GO:0044424, GO:0044427, GO:0005694, GO:0043226, GO:0044422
GO:0000075 [BP]cell cycle checkpointconfidentGO:0051726, GO:0010564, GO:0050794, GO:0008150, GO:1901987, GO:0010948, GO:0065007, GO:1901988, GO:0048519, GO:0050789, GO:0048523
GO:0000722 [BP]telomere maintenance via recombinationconfidentGO:0060249, GO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0000723, GO:0006139, GO:0044260, GO:0071840, GO:0016043, GO:0071704, GO:0042592, GO:0065007, GO:0044699, GO:0065008, GO:0006996, GO:0009987, GO:0006725, GO:0044763, GO:0008152, GO:0046483, GO:0006310, GO:0044238, GO:0006312, GO:0051276, GO:0032200, GO:0044237, GO:0043170, GO:0006259, GO:0008150
GO:0000724 [BP]double-strand break repair via homologous recombinationconfidentGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0051716, GO:0006302, GO:0000725, GO:0071704, GO:0044699, GO:0006281, GO:0009987, GO:0006725, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0006310, GO:0044238, GO:0044260, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:0003689 [MF]DNA clamp loader activityconfidentGO:0008094, GO:0016818, GO:0016887, GO:0042623, GO:0097159, GO:0016787, GO:0017111, GO:0003824, GO:0016817, GO:0016462, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:0033170, GO:1901363
GO:0046331 [BP]lateral inhibitionprobableGO:0032502, GO:0044700, GO:0045165, GO:0048869, GO:0030154, GO:0045168, GO:0008150, GO:0044763, GO:0023052, GO:0007267, GO:0007154, GO:0009987, GO:0044699
GO:0016321 [BP]female meiosis chromosome segregationprobableGO:0007126, GO:0048610, GO:0051321, GO:0000003, GO:0045132, GO:0044763, GO:0008150, GO:0022402, GO:0044699, GO:0007059, GO:0009987, GO:0007143, GO:0007049
GO:0040011 [BP]locomotionprobableGO:0008150
GO:0006298 [BP]mismatch repairprobableGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0051716, GO:0044260, GO:0071704, GO:0044699, GO:0006281, GO:0009987, GO:0006725, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0044238, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:0031390 [CC]Ctf18 RFC-like complexprobableGO:0043234, GO:0005575, GO:0032991, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0043228, GO:0044424, GO:0044427, GO:0005694, GO:0043226, GO:0044422
GO:0022008 [BP]neurogenesisprobableGO:0032502, GO:0048856, GO:0044707, GO:0007399, GO:0048869, GO:0030154, GO:0008150, GO:0032501, GO:0044763, GO:0048731, GO:0009987, GO:0007275, GO:0044699
GO:0000077 [BP]DNA damage checkpointprobableGO:0051716, GO:0031570, GO:0000075, GO:0008150, GO:0050789, GO:0050896, GO:0009987, GO:0010564, GO:0010948, GO:0050794, GO:0006974, GO:1901987, GO:0006950, GO:0065007, GO:0044763, GO:0044699, GO:0033554, GO:0048519, GO:0048523, GO:0051726, GO:1901988
GO:0007062 [BP]sister chromatid cohesionprobableGO:0006996, GO:0051276, GO:0022402, GO:0009987, GO:0016043, GO:0008150, GO:0044763, GO:0044699, GO:0071840, GO:0007059, GO:0007049
GO:0009792 [BP]embryo development ending in birth or egg hatchingprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0009790, GO:0008150, GO:0007275, GO:0044699
GO:0007067 [BP]mitosisprobableGO:0006996, GO:0044699, GO:0000278, GO:0071840, GO:0009987, GO:0000280, GO:0016043, GO:0008150, GO:0022402, GO:0048285, GO:0044763, GO:0007049
GO:0044351 [BP]macropinocytosisprobableGO:0006897, GO:0016192, GO:0006907, GO:0006810, GO:0044765, GO:0008150, GO:0051234, GO:0051179, GO:0044699
GO:0000790 [CC]nuclear chromatinprobableGO:0031974, GO:0043229, GO:0043228, GO:0000785, GO:0000228, GO:0043227, GO:0043226, GO:0044446, GO:0031981, GO:0005634, GO:0044454, GO:0005694, GO:0043231, GO:0043232, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0070013, GO:0044428, GO:0044424, GO:0044427, GO:0044422
GO:0006270 [BP]DNA replication initiationprobableGO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901360, GO:0006139, GO:0044260, GO:0071704, GO:0006260, GO:0006261, GO:1901576, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0046483, GO:0044238, GO:0044237, GO:0043170, GO:0006259
GO:0004003 [MF]ATP-dependent DNA helicase activityprobableGO:0008094, GO:0016818, GO:0008026, GO:0042623, GO:0016787, GO:0017111, GO:0016817, GO:0004386, GO:0070035, GO:0003674, GO:0016887, GO:0003678, GO:0016462, GO:0003824
GO:0031122 [BP]cytoplasmic microtubule organizationprobableGO:0006996, GO:0007017, GO:0007010, GO:0071822, GO:0043933, GO:0009987, GO:0016043, GO:0008150, GO:0000226, GO:0071840, GO:0044763, GO:0044699
GO:0033314 [BP]mitotic DNA replication checkpointprobableGO:0007346, GO:0000076, GO:0000075, GO:0051726, GO:0008150, GO:0010564, GO:0050794, GO:0048523, GO:1901987, GO:0010948, GO:0065007, GO:1901991, GO:1901990, GO:0048519, GO:0044774, GO:0007093, GO:0050789, GO:1901988, GO:0031570
GO:0060041 [BP]retina development in camera-type eyeprobableGO:0032502, GO:0032501, GO:0044707, GO:0007423, GO:0048856, GO:0044767, GO:0048513, GO:0001654, GO:0048731, GO:0008150, GO:0043010, GO:0007275, GO:0044699
GO:0000819 [BP]sister chromatid segregationprobableGO:0006996, GO:0051276, GO:0022402, GO:0009987, GO:0016043, GO:0008150, GO:0044763, GO:0044699, GO:0071840, GO:0007059, GO:0007049
GO:0043596 [CC]nuclear replication forkprobableGO:0031974, GO:0043229, GO:0043228, GO:0000228, GO:0043227, GO:0043226, GO:0044446, GO:0031981, GO:0005634, GO:0044454, GO:0005657, GO:0005694, GO:0043231, GO:0043232, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0070013, GO:0044428, GO:0044424, GO:0044427, GO:0044422
GO:0009378 [MF]four-way junction helicase activityprobableGO:0016787, GO:0016818, GO:0003824, GO:0017111, GO:0016817, GO:0016462, GO:0003674, GO:0003678, GO:0004386

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1SXJ, chain B
Confidence level:very confident
Coverage over the Query: 2-311
View the alignment between query and template
View the model in PyMOL