BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy88
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
V +GDRV + + N M+ ++H+HG+ Q GT DGVPF+TQCPI G+T Y FT
Sbjct: 38 VNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDY 97
Query: 65 NAGTHFWHAHT 75
N GT+++H+HT
Sbjct: 98 NVGTYWYHSHT 108
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
V EGD V V+V N M L +TIHWHG+ QRGT SDGVP TQ I G+TF Y+F A
Sbjct: 38 VMEGDDVTVNVTN-MTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEP 96
Query: 66 AGTHFWHAH 74
AGT ++H H
Sbjct: 97 AGTMWYHCH 105
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAGT 68
GD VVV++ N + IHWHGI QRGT ++DG ++QC I G TF Y FT N GT
Sbjct: 41 GDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGT 100
Query: 69 HFWHAH 74
F+H H
Sbjct: 101 FFYHGH 106
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-GT 68
GD +++ V N+++ +IHWHGI Q G+ DGVP VTQCPI G+T Y+F GT
Sbjct: 105 GDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGT 164
Query: 69 HFWHAH 74
++H+H
Sbjct: 165 TWYHSH 170
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 19 NSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA--NAGTH 69
N +D L N TIHWHG+ Q GT ++DG FV QCPI GN+F Y FT AGT
Sbjct: 47 NVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTF 106
Query: 70 FWHAH 74
++H+H
Sbjct: 107 WYHSH 111
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-GT 68
GD +++ V N+++ +IHWHGI Q G+ DGVP VTQCPI G+T Y+F GT
Sbjct: 105 GDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGT 164
Query: 69 HFWHAH 74
++H+H
Sbjct: 165 TWYHSH 170
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 24 LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN--AGTHFWHAH 74
++ +IHWHG Q+GT ++DG F+TQCPI GN+F Y F AGT+++H+H
Sbjct: 60 VDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSH 112
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 13 VVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHF 70
VV D+ N +IHWHG+ QRGT ++DG V QCPI+ G+ F Y+FT +AGT +
Sbjct: 48 VVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFW 107
Query: 71 WHAH 74
+H+H
Sbjct: 108 YHSH 111
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 13 VVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHF 70
VV D+ N +IHWHG+ QRGT ++DG V QCPI+ G+ F Y+FT +AGT +
Sbjct: 48 VVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFW 107
Query: 71 WHAH 74
+H+H
Sbjct: 108 YHSH 111
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 9 EGDRVVVDVRNSMDGL----ENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
+GD+ ++V N++ ++HWHG Q+GT ++DG FV QCPI G++F Y F+
Sbjct: 40 KGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGPAFVNQCPIAAGSSFLYDFST 99
Query: 65 --NAGTHFWHAH 74
AGT ++H+H
Sbjct: 100 PIQAGTFWYHSH 111
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 10 GDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF--T 63
GD +++ N M L+ T IHWHG Q+GT ++DG F+ QCPI GN+F Y F
Sbjct: 41 GDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPAFINQCPIASGNSFLYDFQVP 100
Query: 64 ANAGTHFWHAH 74
AGT ++H+H
Sbjct: 101 GQAGTFWYHSH 111
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 10 GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
GDR ++V +D L N +IHWHG Q+GT ++DG F+ QCPI+ G++F Y F
Sbjct: 41 GDRFQLNV---IDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDF 97
Query: 63 TA--NAGTHFWHAH 74
AGT ++H+H
Sbjct: 98 QVPDQAGTFWYHSH 111
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 9 EGDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
+GDR ++V ++M L++T IHWHG Q GT ++DG FV QCPI+ G+ F Y F
Sbjct: 40 KGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQV 99
Query: 65 --NAGTHFWHAH 74
AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 9 EGDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
+GDR ++V ++M L++T IHWHG Q GT ++DG FV QCPI+ G+ F Y F
Sbjct: 40 KGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQV 99
Query: 65 --NAGTHFWHAH 74
AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 9 EGDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
+GDR ++V ++M L++T IHWHG Q GT ++DG FV QCPI+ G+ F Y F
Sbjct: 40 KGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQV 99
Query: 65 --NAGTHFWHAH 74
AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 9 EGDRV---VVDVRNSMDGLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF-- 62
+GDR VVD + L++T IHWHG Q GT ++DG FV QCPI G++F Y F
Sbjct: 40 KGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHV 99
Query: 63 TANAGTHFWHAH 74
AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 12/75 (16%)
Query: 9 EGDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
+GDR ++V +D L N +IHWHG Q+GT ++DG FV QCPI G++F Y
Sbjct: 40 KGDRFQLNV---IDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAFVNQCPIASGHSFLYD 96
Query: 62 FTA--NAGTHFWHAH 74
F AGT ++H+H
Sbjct: 97 FQVPDQAGTFWYHSH 111
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 10 GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
GDR ++V +D L N ++HWHG Q+GT ++DG F+ QCPI+ G++F Y F
Sbjct: 41 GDRFQLNV---IDNLTNHTMLKTTSVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63 TA--NAGTHFWHAH 74
AGT ++H+H
Sbjct: 98 QVPNQAGTFWYHSH 111
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 10 GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
GDR ++V +D L N ++HWHG Q+GT ++DG F+ QCPI+ G++F Y F
Sbjct: 41 GDRFQLNV---IDNLTNHTMLKTTSVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63 TA--NAGTHFWHAH 74
AGT ++H+H
Sbjct: 98 QVPNQAGTFWYHSH 111
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 12/74 (16%)
Query: 10 GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
GDR ++V +D L N +IHWHG Q GT ++DG F+ QCPI+ G++F Y F
Sbjct: 41 GDRFQLNV---IDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63 TA--NAGTHFWHAH 74
AGT ++H+H
Sbjct: 98 QVPDQAGTFWYHSH 111
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 12/74 (16%)
Query: 10 GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
GDR ++V +D L N +IHWHG Q GT ++DG F+ QCPI+ G++F Y F
Sbjct: 41 GDRFQLNV---IDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63 TA--NAGTHFWHAH 74
AGT ++H+H
Sbjct: 98 QVPDQAGTFWYHSH 111
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 27 TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH 74
+IHWHG Q GT DG FV QCPI +F Y F AGT+++H+H
Sbjct: 83 SIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSH 132
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
GD V V V N++ +IHWHGIHQ+ T DG VT+CPI +G Y++ A G
Sbjct: 74 GDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYG 133
Query: 68 THFWHAH 74
T ++H+H
Sbjct: 134 TSWYHSH 140
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
GD V V V N++ +IHWHGIHQ+ T DG VT+CPI +G Y++ A G
Sbjct: 74 GDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYG 133
Query: 68 THFWHAH 74
T ++H+H
Sbjct: 134 TSWYHSH 140
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
GD + V V N++ ++HWHG+ Q G ++DG VT+CPI +G Y+F A G
Sbjct: 115 GDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPIPPKGGRKTYKFRATQYG 174
Query: 68 THFWHAH 74
T ++H+H
Sbjct: 175 TSWYHSH 181
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
GD V V V N++ +IHWHGI Q+ T DG VT+CPI +G Y++ A G
Sbjct: 74 GDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYG 133
Query: 68 THFWHAH 74
T ++H+H
Sbjct: 134 TSWYHSH 140
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 4 PK-NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
PK V EGD++ + V+N + TIHWHG+ Q DG P PI G Y+F
Sbjct: 82 PKIEVFEGDKLEILVKNKLKE-ATTIHWHGVPVPPDQ--DGSP---HDPILAGEERIYRF 135
Query: 63 TA---NAGTHFWHAH 74
+AGT+++H H
Sbjct: 136 EIPQDSAGTYWYHPH 150
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-G 67
EGD + + N+ +TIH+HG+H R T DG P + I G +F Y+F A G
Sbjct: 72 EGDALRIHFTNA-GAHPHTIHFHGVH-RATM--DGTPGIGAGSIAPGQSFTYEFDATPFG 127
Query: 68 THFWHAH 74
TH +H H
Sbjct: 128 THLYHCH 134
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From
E. Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In
Previously Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 42 DGVPFVTQCPITQGNTFRYQFTANAGTHFWH 72
D ++ P T G F+ Q T N GT+ WH
Sbjct: 329 DEATWLRMIPKTMGTLFQIQVTDNTGTN-WH 358
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 42 DGVPFVTQCPITQGNTFRYQFTANAGTHFWH 72
D ++ P T G F+ Q T N GT+ WH
Sbjct: 287 DEATWLRMIPKTMGTLFQIQVTDNTGTN-WH 316
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 45
G V VD+ N + E T+HWHG+ G DG P
Sbjct: 55 GKAVTVDIYNQLTE-ETTLHWHGLEVPGE--VDGGP 87
>pdb|3DI4|A Chain A, Crystal Structure Of A Duf1989 Family Protein (spo0365)
From Silicibacter Pomeroyi Dss-3 At 1.60 A Resolution
pdb|3DI4|B Chain B, Crystal Structure Of A Duf1989 Family Protein (spo0365)
From Silicibacter Pomeroyi Dss-3 At 1.60 A Resolution
Length = 286
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 2 LYPKNVCEGDRVVVDV---RNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTF 58
L+ +V G+R+ ++ R +E+T+ W+GI Q G D + T+C GN
Sbjct: 102 LHGTHVTTGERLWSNLPYLRPXATIIEDTLGWYGIDQYGGSVHDVIG--TRCDPYTGNLL 159
Query: 59 RYQFTANAGTHFWH 72
AG H+ H
Sbjct: 160 -------AGGHYHH 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,554,596
Number of Sequences: 62578
Number of extensions: 91563
Number of successful extensions: 250
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 42
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)