Query psy88
Match_columns 75
No_of_seqs 156 out of 1278
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 19:35:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy88.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/88hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqr_A Laccase; multicopper ox 100.0 1E-29 3.4E-34 178.9 9.9 75 1-75 96-171 (580)
2 3t6v_A Laccase; beta barrel, o 100.0 1.5E-29 5.1E-34 175.3 9.4 75 1-75 33-113 (495)
3 3pxl_A Laccase; 4-copper prote 100.0 1.7E-29 5.8E-34 175.2 9.7 75 1-75 32-112 (499)
4 1aoz_A Ascorbate oxidase; oxid 100.0 1.6E-29 5.6E-34 176.4 9.5 75 1-75 32-107 (552)
5 1zpu_A Iron transport multicop 100.0 3.7E-29 1.3E-33 174.4 9.0 75 1-75 32-108 (534)
6 1v10_A Laccase; multicopper bl 100.0 7.8E-29 2.7E-33 172.2 9.2 75 1-75 53-133 (521)
7 2q9o_A Laccase-1; multicopper 100.0 7.5E-29 2.6E-33 173.5 8.4 75 1-75 65-141 (559)
8 1hfu_A Laccase 1; oxidoreducta 100.0 1.3E-28 4.3E-33 170.5 9.1 74 2-75 33-112 (503)
9 3g5w_A Multicopper oxidase typ 100.0 3.5E-28 1.2E-32 160.8 8.8 74 1-75 32-106 (318)
10 3t9w_A Small laccase, multi-co 99.9 1.7E-27 5.7E-32 156.5 9.2 71 1-75 56-140 (299)
11 2zwn_A Two-domain type laccase 99.9 1.5E-27 5.2E-32 158.6 8.3 74 1-75 33-107 (339)
12 3gdc_A Multicopper oxidase; be 99.9 4E-27 1.4E-31 153.8 9.0 70 2-75 65-135 (288)
13 3tas_A Small laccase, multi-co 99.9 4.7E-27 1.6E-31 155.0 9.2 71 1-75 40-124 (313)
14 3kw8_A Laccase, putative coppe 99.9 1.6E-26 5.4E-31 150.2 9.1 71 1-75 34-118 (276)
15 3zx1_A Oxidoreductase, putativ 99.9 1E-26 3.6E-31 160.8 8.7 69 1-75 80-151 (481)
16 2uxt_A Protein SUFI, SUFI; oxi 99.9 8.2E-27 2.8E-31 159.8 7.5 69 1-75 48-118 (451)
17 3aw5_A Multicopper oxidase; be 99.9 2.3E-26 7.7E-31 157.6 6.4 67 2-74 37-105 (448)
18 3abg_A Bilirubin oxidase; clea 99.9 2.2E-25 7.4E-30 155.5 7.0 69 1-75 67-137 (534)
19 3od3_A Blue copper oxidase CUE 99.9 2.1E-25 7.3E-30 154.5 6.5 68 2-75 47-116 (488)
20 2j5w_A Ceruloplasmin, ferroxid 99.9 6.8E-25 2.3E-29 161.8 9.5 74 1-75 93-183 (1065)
21 1sdd_A Coagulation factor V; c 99.9 9E-25 3.1E-29 143.6 9.0 71 2-75 59-148 (306)
22 2wsd_A Spore coat protein A; o 99.9 4.6E-25 1.6E-29 153.0 7.8 73 1-75 56-156 (513)
23 2xu9_A Laccase; oxidoreductase 99.9 1E-24 3.4E-29 148.9 8.9 68 1-75 45-115 (439)
24 2r7e_A Coagulation factor VIII 99.9 1.4E-25 4.7E-30 161.2 4.6 72 1-75 73-163 (742)
25 3gyr_A PHS, phenoxazinone synt 99.9 1E-24 3.5E-29 152.3 8.0 69 1-75 63-174 (612)
26 2r7e_B Coagulation factor VIII 99.9 1.3E-24 4.4E-29 156.7 6.0 72 1-75 197-279 (770)
27 3cg8_A Laccase; oxidoreductase 99.9 9.5E-24 3.2E-28 140.8 9.1 70 2-75 76-159 (343)
28 1sdd_B Coagulation factor V; c 99.9 2.6E-24 8.8E-29 152.2 5.5 72 1-75 67-157 (647)
29 2g23_A PHS, phenoxazinone synt 99.9 6.8E-23 2.3E-27 145.0 9.1 70 1-75 63-174 (612)
30 2r7e_A Coagulation factor VIII 99.9 1.8E-23 6.2E-28 150.2 4.4 73 1-75 450-538 (742)
31 1kbv_A ANIA, major outer membr 99.8 3.5E-21 1.2E-25 127.4 8.0 67 2-75 69-137 (327)
32 2zoo_A Probable nitrite reduct 99.8 5.2E-21 1.8E-25 130.2 8.4 67 2-75 59-127 (442)
33 1mzy_A Copper-containing nitri 99.8 3.7E-21 1.3E-25 127.3 6.7 68 2-75 63-131 (333)
34 1oe1_A Dissimilatory copper-co 99.8 1.6E-20 5.3E-25 124.3 6.9 67 2-75 64-132 (336)
35 2bw4_A Copper-containing nitri 99.8 1.5E-20 5.3E-25 124.5 6.7 68 2-75 70-138 (340)
36 2dv6_A Nitrite reductase; elec 99.7 9.3E-18 3.2E-22 114.1 8.3 67 2-75 194-262 (447)
37 3cvb_A Plastocyanin; cupredoxi 99.7 1.8E-17 6.3E-22 93.5 4.3 69 2-74 18-90 (105)
38 3kw8_A Laccase, putative coppe 99.7 3.7E-16 1.3E-20 101.4 8.8 71 2-75 167-249 (276)
39 2dv6_A Nitrite reductase; elec 99.6 9.1E-16 3.1E-20 104.3 7.7 62 2-75 54-116 (447)
40 2j5w_A Ceruloplasmin, ferroxid 99.6 2.8E-16 9.7E-21 116.2 4.6 69 2-75 631-701 (1065)
41 3cg8_A Laccase; oxidoreductase 99.5 4.8E-14 1.7E-18 93.9 8.7 70 3-75 209-290 (343)
42 1iby_A Nitrosocyanin; RED copp 99.5 5E-13 1.7E-17 76.3 8.1 59 2-74 37-96 (112)
43 3t9w_A Small laccase, multi-co 99.4 7.5E-13 2.6E-17 86.8 9.4 72 2-75 189-271 (299)
44 3tas_A Small laccase, multi-co 99.4 1.6E-12 5.3E-17 85.6 8.9 72 2-75 173-255 (313)
45 2ov0_A Amicyanin; beta-sandwic 99.4 1.6E-12 5.3E-17 73.7 7.8 62 2-74 32-93 (105)
46 2aan_A Auracyanin A; cupredoxi 99.4 2.5E-12 8.4E-17 76.0 8.2 73 2-75 34-125 (139)
47 3g5w_A Multicopper oxidase typ 99.4 9.6E-13 3.3E-17 86.9 6.5 71 3-75 178-254 (318)
48 3zx1_A Oxidoreductase, putativ 99.4 1.3E-12 4.6E-17 90.4 7.4 72 3-75 385-465 (481)
49 2g23_A PHS, phenoxazinone synt 99.3 1.5E-12 5E-17 92.4 6.6 73 2-75 471-575 (612)
50 3gdc_A Multicopper oxidase; be 99.3 4.1E-12 1.4E-16 82.8 6.8 71 3-75 195-272 (288)
51 2xu9_A Laccase; oxidoreductase 99.3 6E-12 2E-16 85.9 7.8 70 4-75 349-424 (439)
52 1hfu_A Laccase 1; oxidoreducta 99.3 6.4E-12 2.2E-16 87.0 7.9 72 3-75 373-454 (503)
53 2gim_A Plastocyanin; beta shee 99.3 8.7E-12 3E-16 70.2 6.6 67 2-74 19-91 (106)
54 1v10_A Laccase; multicopper bl 99.3 6.5E-12 2.2E-16 87.4 7.2 69 3-75 397-475 (521)
55 1zpu_A Iron transport multicop 99.3 7.5E-12 2.6E-16 87.3 7.1 71 4-75 371-465 (534)
56 1sdd_B Coagulation factor V; c 99.3 1.2E-11 4.2E-16 87.6 8.0 71 3-75 239-311 (647)
57 2cal_A Rusticyanin; iron respi 99.3 2.8E-11 9.6E-16 73.0 7.6 69 3-74 61-138 (154)
58 2zwn_A Two-domain type laccase 99.2 1.6E-11 5.5E-16 81.4 6.5 71 3-75 179-255 (339)
59 1aoz_A Ascorbate oxidase; oxid 99.2 1.5E-11 5E-16 86.0 6.2 72 4-75 418-509 (552)
60 1fwx_A Nitrous oxide reductase 99.2 3.4E-11 1.2E-15 85.3 7.7 62 2-74 512-574 (595)
61 3abg_A Bilirubin oxidase; clea 99.2 3.1E-11 1.1E-15 84.3 7.5 72 4-75 376-459 (534)
62 3t6v_A Laccase; beta barrel, o 99.2 5.3E-11 1.8E-15 82.6 8.5 70 4-75 375-455 (495)
63 3gyr_A PHS, phenoxazinone synt 99.2 2.7E-11 9.4E-16 84.6 6.5 71 3-75 472-575 (612)
64 1sdd_A Coagulation factor V; c 99.2 9E-13 3.1E-17 86.5 -1.8 68 3-75 215-284 (306)
65 2plt_A Plastocyanin; electron 99.2 1.9E-10 6.4E-15 63.8 7.9 64 2-74 17-84 (98)
66 3pxl_A Laccase; 4-copper prote 99.2 1.6E-10 5.6E-15 80.2 8.9 70 4-75 371-455 (499)
67 4hci_A Cupredoxin 1; structura 99.2 1.4E-10 4.9E-15 64.9 6.7 59 2-74 27-86 (100)
68 1kbv_A ANIA, major outer membr 99.2 5.2E-11 1.8E-15 78.7 5.6 72 3-75 214-290 (327)
69 2wsd_A Spore coat protein A; o 99.1 4.6E-11 1.6E-15 82.9 5.0 72 3-75 397-494 (513)
70 3od3_A Blue copper oxidase CUE 99.1 2.2E-10 7.6E-15 79.5 6.7 70 4-75 393-474 (488)
71 1bxv_A Plastocyanin; copper pr 99.1 7.4E-10 2.5E-14 60.5 7.3 60 2-74 18-77 (91)
72 1qhq_A Protein (auracyanin); e 99.1 1.5E-09 5.3E-14 63.8 8.7 72 2-74 32-123 (140)
73 1pcs_A Plastocyanin; electron 99.0 2.3E-10 7.8E-15 63.5 4.2 67 2-74 18-84 (98)
74 2q9o_A Laccase-1; multicopper 99.0 5.7E-10 1.9E-14 78.2 6.7 72 4-75 405-505 (559)
75 2r7e_B Coagulation factor VIII 99.0 1.2E-10 4.3E-15 84.3 3.5 71 3-75 368-440 (770)
76 1byp_A Protein (plastocyanin); 99.0 2E-09 6.8E-14 59.8 7.4 64 2-74 16-85 (99)
77 1b3i_A PETE protein, protein ( 99.0 8.7E-10 3E-14 61.1 5.2 64 2-74 18-83 (97)
78 1plc_A Plastocyanin; electron 99.0 3.7E-09 1.2E-13 58.7 7.5 64 2-74 16-85 (99)
79 3sqr_A Laccase; multicopper ox 99.0 1.2E-09 4.2E-14 77.1 6.3 67 8-75 444-528 (580)
80 3erx_A Pseudoazurin; copper pr 99.0 2.1E-09 7.3E-14 62.7 6.3 60 2-74 20-79 (123)
81 2zoo_A Probable nitrite reduct 98.9 2.1E-09 7.2E-14 73.0 6.2 72 3-75 204-280 (442)
82 1kdj_A Plastocyanin; electron 98.9 4.4E-09 1.5E-13 58.6 6.4 64 2-74 16-88 (102)
83 3tu6_A Pseudoazurin (blue copp 98.9 2.7E-09 9.3E-14 62.6 5.2 60 2-74 22-81 (127)
84 3ef4_A Pseudoazurin, blue copp 98.9 4.8E-09 1.6E-13 61.4 5.8 60 2-74 21-80 (124)
85 3c75_A Amicyanin; copper prote 98.9 1.2E-08 4.1E-13 59.9 7.5 62 2-74 59-120 (132)
86 1mzy_A Copper-containing nitri 98.9 9.3E-09 3.2E-13 67.8 7.5 69 3-75 225-301 (333)
87 2bw4_A Copper-containing nitri 98.9 1.1E-08 3.6E-13 67.6 7.7 70 3-75 231-307 (340)
88 2uxt_A Protein SUFI, SUFI; oxi 98.8 3.3E-09 1.1E-13 72.7 4.5 66 4-75 348-425 (451)
89 1iuz_A Plastocyanin; electron 98.8 5.9E-08 2E-12 53.9 7.8 64 2-74 17-84 (98)
90 3aw5_A Multicopper oxidase; be 98.8 1.1E-08 3.8E-13 70.1 5.4 67 5-75 340-433 (448)
91 1cuo_A Protein (azurin ISO-2); 98.7 4.5E-08 1.5E-12 57.5 5.8 71 2-73 17-112 (129)
92 1paz_A Pseudoazurin precursor; 98.7 6.6E-08 2.3E-12 56.3 6.3 60 2-74 20-79 (123)
93 1id2_A Amicyanin; beta barrel, 98.7 1.4E-07 4.8E-12 53.2 7.4 62 2-74 33-94 (106)
94 1pmy_A Pseudoazurin; electron 98.7 6.2E-08 2.1E-12 56.4 5.7 60 2-74 20-79 (123)
95 2ux6_A Pseudoazurin; type-1 co 98.6 1.1E-07 3.7E-12 55.2 6.2 60 2-74 20-79 (122)
96 3ay2_A Lipid modified azurin p 98.6 3.9E-08 1.3E-12 60.1 4.4 72 2-74 57-151 (167)
97 1oe1_A Dissimilatory copper-co 98.5 3E-07 1E-11 60.5 7.4 69 3-75 225-301 (336)
98 1nwp_A Azurin; electron transp 98.5 8E-07 2.7E-11 52.1 7.9 72 2-74 17-113 (128)
99 2ccw_A Azurin II, AZN-2; elect 98.5 8.4E-07 2.9E-11 52.0 7.7 72 2-74 17-113 (129)
100 3sbq_A Nitrous-oxide reductase 98.4 8.1E-07 2.8E-11 63.2 7.6 60 2-74 557-619 (638)
101 2iaa_C Azurin; quinoprotein, t 98.4 1.7E-06 5.8E-11 50.7 7.8 72 2-74 16-112 (128)
102 2cua_A Protein (CUA); CUA cent 98.0 2.2E-05 7.6E-10 46.2 6.5 57 2-73 59-116 (135)
103 3fsa_A Azurin; copper, cupredo 98.0 6E-05 2E-09 44.0 8.0 72 2-74 17-113 (125)
104 3s8f_B Cytochrome C oxidase su 97.7 0.00013 4.4E-09 44.5 6.6 58 2-74 92-150 (168)
105 1cyx_A CYOA; electron transpor 94.0 0.21 7.3E-06 31.2 6.1 57 3-74 41-98 (205)
106 4ep8_B Urease subunit beta; al 93.0 0.4 1.4E-05 26.8 5.5 59 4-63 12-82 (101)
107 2gsm_B Cytochrome C oxidase su 92.2 0.58 2E-05 30.1 6.4 57 3-74 171-228 (262)
108 4ac7_B Urease subunit beta; hy 91.9 0.38 1.3E-05 27.9 4.7 59 4-63 18-88 (126)
109 4ubp_B Protein (urease (chain 91.9 0.38 1.3E-05 27.9 4.7 59 4-63 18-88 (126)
110 3hb3_B Cytochrome C oxidase su 91.3 0.94 3.2E-05 29.7 6.6 57 3-74 189-246 (298)
111 1v54_B Cytochrome C oxidase po 89.0 1.8 6.1E-05 27.2 6.3 57 3-74 140-197 (227)
112 3isy_A Bsupi, intracellular pr 88.4 2.3 7.9E-05 24.3 6.9 63 9-72 16-98 (120)
113 3rfr_A PMOB; membrane, oxidore 88.0 1.8 6.1E-05 29.7 6.1 14 50-63 352-365 (419)
114 3qga_A UREA2, fusion of urease 86.7 1.2 4E-05 28.2 4.3 59 4-63 117-187 (225)
115 1yew_A Particulate methane mon 85.8 2 6.9E-05 29.2 5.4 16 48-63 318-333 (382)
116 1xwv_A DER F II; beta sheets, 85.5 3.1 0.00011 23.6 5.6 57 5-63 27-91 (129)
117 1nep_A EPV20, BNPC2, epididyma 82.9 3.7 0.00013 23.3 5.1 58 5-63 28-93 (130)
118 2wtp_A ORF131 protein, CZCE; m 82.5 0.52 1.8E-05 27.5 1.3 18 4-21 72-89 (131)
119 2wnv_C C1Q chain C, complement 79.3 1.6 5.5E-05 24.8 2.7 17 3-19 93-109 (131)
120 1e9y_A Urease subunit alpha; h 79.2 2.5 8.5E-05 26.9 3.7 59 4-63 117-187 (238)
121 2wnv_A C1Q chain A, complement 79.1 1.8 6.2E-05 24.7 2.9 17 3-19 94-110 (134)
122 2wnv_B C1Q chain B, complement 77.9 1.9 6.4E-05 24.7 2.7 17 3-19 95-111 (136)
123 2f1e_A Protein APAG; APAG prot 77.3 4.7 0.00016 23.2 4.3 48 14-63 34-87 (127)
124 1fft_B Ubiquinol oxidase; elec 76.7 2.9 9.8E-05 27.6 3.6 57 3-74 151-208 (315)
125 1xvs_A Protein APAG; MCSG APC2 74.6 4.8 0.00016 23.1 3.8 48 14-63 33-86 (126)
126 4ajy_V VON hippel-lindau disea 74.4 6.5 0.00022 23.7 4.5 44 8-61 17-60 (163)
127 1xq4_A Protein APAG; all beta 72.8 6 0.0002 23.1 4.0 48 14-63 38-91 (139)
128 2xzz_A Protein-glutamine gamma 72.3 7.5 0.00026 21.3 4.1 49 12-67 23-77 (102)
129 1lm8_V VHL, VON hippel-lindau 71.1 10 0.00035 22.7 4.8 44 8-61 14-57 (160)
130 2c34_A ICP, inhibitor of cyste 70.4 12 0.0004 20.9 7.3 20 3-22 15-34 (116)
131 1tza_A APAG protein, SOR45; st 70.1 5.3 0.00018 23.2 3.3 49 13-63 32-86 (134)
132 4gy7_A Urease; JACK bean, hydr 69.4 6.2 0.00021 29.2 4.2 59 4-63 143-213 (840)
133 1gr3_A Collagen X; extracellul 69.0 2.6 9E-05 24.9 1.9 17 3-19 120-136 (160)
134 4g9s_B Inhibitor of G-type lys 68.4 2.9 0.0001 23.1 1.9 18 3-20 30-47 (111)
135 1o91_A Collagen alpha 1(VIII) 67.0 3 0.0001 25.1 1.9 17 3-19 138-154 (178)
136 3kmh_A D-lyxose isomerase; cup 65.8 14 0.00048 23.6 4.8 51 3-60 129-184 (246)
137 3m86_A Amoebiasin-2; cysteine 64.4 6 0.00021 21.9 2.7 18 3-20 16-33 (111)
138 2ka3_A Emilin-1; C1Q-like doma 63.5 1.4 4.9E-05 26.1 -0.1 17 3-19 119-135 (162)
139 4f3j_A Complement C1Q tumor ne 62.5 4.2 0.00014 23.4 1.9 16 4-19 95-110 (148)
140 2wgn_B Inhibitor of cysteine p 58.6 7.9 0.00027 22.2 2.5 18 3-20 35-52 (132)
141 1tnr_A Tumor necrosis factor b 58.1 8.5 0.00029 22.1 2.7 16 4-19 111-126 (144)
142 2cio_B Inhibitor of cysteine p 57.4 23 0.00079 19.8 6.7 18 3-20 13-30 (121)
143 3idu_A Uncharacterized protein 56.9 15 0.0005 20.9 3.5 58 6-70 28-91 (127)
144 1rj8_A Ectodysplasin-A isoform 54.3 7.5 0.00026 23.0 2.0 17 4-20 124-140 (164)
145 3es6_B Prolactin-inducible pro 53.8 27 0.00094 19.6 5.2 56 3-63 14-73 (118)
146 3ugn_A Tumor necrosis factor l 52.5 11 0.00038 22.5 2.6 18 4-21 133-150 (167)
147 3v2d_Y 50S ribosomal protein L 51.5 4.2 0.00014 22.9 0.5 16 1-16 1-16 (110)
148 2h7w_A Chagasin; beta-strands, 51.5 32 0.0011 19.6 6.8 19 3-21 33-51 (131)
149 2e6j_A Hydin protein; PAPD, st 49.9 11 0.00037 20.1 2.1 53 12-69 29-86 (112)
150 1zru_A Lactophage P2 receptor 48.9 49 0.0017 21.3 5.2 18 5-22 176-195 (264)
151 4dzg_A PLIG; lysozyme inhibito 48.3 4.6 0.00016 22.6 0.4 19 3-21 32-50 (114)
152 2ys4_A Hydrocephalus-inducing 47.9 32 0.0011 18.7 3.9 53 8-69 40-96 (122)
153 4g4f_A Tumor necrosis factor l 46.2 12 0.00039 21.6 1.8 18 4-21 89-106 (126)
154 1u5x_A Tumor necrosis factor l 45.9 11 0.00038 21.6 1.8 17 4-20 106-122 (140)
155 3rfr_A PMOB; membrane, oxidore 45.6 18 0.00063 24.8 3.0 25 49-73 109-136 (419)
156 4dou_A Adiponectin; single-cha 45.1 14 0.00048 25.3 2.4 16 3-18 115-130 (442)
157 2vb2_X Copper protein, cation 44.3 13 0.00046 19.7 1.8 17 6-22 61-77 (88)
158 2qcp_X Cation efflux system pr 44.1 14 0.00047 19.3 1.8 17 6-22 53-69 (80)
159 2q8o_A GITR ligand; TNF, dimer 43.3 13 0.00046 21.4 1.8 17 4-20 98-114 (136)
160 2yev_B Cytochrome C oxidase su 49.2 5 0.00017 26.4 0.0 55 4-73 142-197 (337)
161 2tnf_A Protein (tumor necrosis 43.2 13 0.00045 21.6 1.8 16 4-19 122-137 (156)
162 2vpv_A Protein MIF2, MIF2P; nu 42.8 51 0.0018 19.5 4.4 27 3-30 128-160 (166)
163 1kxg_A B lymphocyte stimulator 42.3 13 0.00046 21.8 1.8 17 4-20 117-133 (152)
164 1xe1_A Hypothetical protein PF 41.3 23 0.00078 20.1 2.6 15 6-20 87-101 (116)
165 2znr_A AMSH-like protease; met 41.1 7.8 0.00027 23.2 0.6 8 68-75 85-92 (178)
166 2l55_A SILB,silver efflux prot 40.8 16 0.00054 19.2 1.8 16 7-22 48-63 (82)
167 2qsv_A Uncharacterized protein 40.1 34 0.0012 20.7 3.5 46 11-63 21-66 (220)
168 1yfb_A Transition state regula 39.6 16 0.00054 18.0 1.6 14 6-19 35-48 (59)
169 2rjl_A TNF superfamily ligand 39.1 16 0.00056 21.8 1.8 16 4-19 150-165 (184)
170 1s55_A Tumor necrosis factor l 38.5 13 0.00045 21.5 1.3 16 4-19 119-134 (156)
171 2l7q_A Conserved protein found 38.2 11 0.00037 21.7 0.9 18 1-18 17-34 (124)
172 1yew_A Particulate methane mon 38.0 29 0.00099 23.6 3.0 24 50-73 82-108 (382)
173 2oyn_A Hypothetical protein MJ 37.8 10 0.00035 22.4 0.7 18 5-22 120-137 (146)
174 1aly_A CD40 ligand; cytokine, 37.4 13 0.00046 21.3 1.2 16 4-19 113-128 (146)
175 2l3b_A Conserved protein found 37.3 13 0.00046 21.5 1.2 18 1-18 18-35 (130)
176 2ahn_A Thaumatin-like protein; 37.0 76 0.0026 19.8 5.7 20 51-70 32-52 (222)
177 2ftc_K 39S ribosomal protein L 36.6 21 0.00072 19.6 1.9 15 6-20 3-17 (98)
178 3hrz_B Cobra venom factor; ser 36.5 77 0.0026 19.7 5.7 64 3-68 88-159 (252)
179 4ffy_L DENV1-E111 single chain 34.7 54 0.0019 17.4 3.5 28 3-30 9-39 (126)
180 2l66_A SSO7C4, transcriptional 34.6 11 0.00036 18.0 0.4 16 5-20 24-39 (53)
181 1dg6_A APO2L/TNF-related apopo 34.3 21 0.00071 21.7 1.8 16 4-19 157-172 (191)
182 2kcq_A MOV34/MPN/PAD-1 family; 33.9 12 0.00041 21.5 0.6 8 68-75 79-86 (153)
183 2bhv_A COMB10; bacterial prote 33.9 27 0.00093 22.2 2.3 20 2-21 211-230 (246)
184 3i4o_A Translation initiation 33.7 17 0.00057 19.1 1.1 15 5-19 52-66 (79)
185 1vjj_A Protein-glutamine gluta 32.9 1.4E+02 0.0049 21.9 6.1 51 12-68 611-667 (692)
186 4fxk_B Complement C4-A alpha c 32.8 79 0.0027 22.7 4.8 59 4-63 161-221 (767)
187 3jqo_A TRAF protein; helical o 32.3 27 0.00091 22.0 2.1 21 2-22 197-217 (227)
188 2k52_A Uncharacterized protein 32.2 28 0.00094 17.6 1.8 16 6-21 45-60 (80)
189 1osg_A Tumor necrosis factor l 32.1 21 0.0007 22.2 1.5 17 4-20 173-189 (208)
190 1i3g_L Antibody FV fragment; a 32.1 56 0.0019 16.8 3.4 28 2-30 11-38 (111)
191 2dgy_A MGC11102 protein; EIF-1 31.8 20 0.00068 20.0 1.3 16 3-18 50-65 (111)
192 1nez_G T-cell surface glycopro 31.7 65 0.0022 17.5 3.5 27 3-30 12-38 (128)
193 3qs7_E FL cytokine receptor; i 31.0 59 0.002 21.3 3.7 27 3-30 56-82 (423)
194 4hu2_A Probable conserved lipo 30.8 95 0.0032 19.0 5.3 51 3-63 27-77 (198)
195 4b4t_V 26S proteasome regulato 30.7 14 0.00049 24.0 0.6 8 68-75 105-112 (306)
196 3esu_F Antibody 14B7* light ch 29.9 84 0.0029 18.3 4.0 28 2-30 11-38 (250)
197 1i8k_A Epidermal growth factor 29.9 61 0.0021 16.5 3.3 27 3-30 9-35 (107)
198 2z35_A T-cell receptor alpha-c 29.8 49 0.0017 17.1 2.7 28 2-30 7-34 (112)
199 1sfp_A ASFP; spermadhesin, bov 29.1 41 0.0014 17.9 2.3 17 4-20 34-50 (114)
200 1p4b_L Antibody variable light 29.0 76 0.0026 17.4 3.6 28 3-30 13-42 (135)
201 3qs9_E FL cytokine receptor; i 28.9 65 0.0022 21.9 3.7 27 3-30 56-82 (527)
202 4db5_A Tumor necrosis factor l 28.8 33 0.0011 19.7 1.8 18 4-21 87-104 (125)
203 3mjj_A Predicted acetamidase/f 28.7 44 0.0015 21.9 2.7 19 2-20 21-39 (301)
204 1fo0_B Protein (BM3.3 T cell r 28.5 68 0.0023 16.6 3.5 27 3-30 9-35 (112)
205 2c35_B Human RPB7, DNA-directe 28.4 53 0.0018 19.1 2.8 16 6-21 136-151 (172)
206 1oi0_A AF2198, hypothetical pr 28.2 14 0.00048 20.4 0.3 8 68-75 66-73 (124)
207 2lu7_A Obscurin-like protein 1 28.2 39 0.0013 16.9 2.0 17 2-18 3-19 (84)
208 3r8b_B G5-8, enterotoxin type 28.2 74 0.0025 16.9 3.8 29 2-31 12-40 (125)
209 1zuy_A Myosin-5 isoform; SH3 d 28.1 20 0.00068 16.6 0.8 17 3-19 16-32 (58)
210 2e27_L Anti-ciguatoxin antibod 28.0 73 0.0025 16.8 4.1 27 3-30 11-37 (119)
211 1jhl_L IGG1-kappa D11.15 FV (l 27.8 66 0.0023 16.3 3.9 27 3-30 9-35 (108)
212 3lag_A Uncharacterized protein 27.7 41 0.0014 17.6 2.1 26 9-34 13-38 (98)
213 3h0g_G DNA-directed RNA polyme 27.6 40 0.0014 19.8 2.2 18 5-22 136-153 (172)
214 2d8h_A SH3YL1 protein; SH3 dom 27.6 31 0.0011 17.2 1.6 17 3-19 32-48 (80)
215 3r8s_P 50S ribosomal protein L 27.4 32 0.0011 19.4 1.7 14 6-19 18-31 (114)
216 2k5p_A THis protein, thiamine- 27.2 24 0.00082 18.2 1.1 12 5-16 52-63 (78)
217 2r32_A GCN4-PII/tumor necrosis 27.1 34 0.0012 20.4 1.8 18 4-21 128-145 (166)
218 2hp4_A T-cell surface glycopro 26.9 55 0.0019 17.1 2.6 29 2-30 7-35 (114)
219 2p1y_A Bispecific alpha/beta T 26.8 85 0.0029 18.0 3.6 27 2-30 7-33 (238)
220 2nwt_A UPF0165 protein AF_2212 26.6 10 0.00035 19.6 -0.5 19 2-20 17-35 (69)
221 2edo_A CD48 antigen; beta-sand 26.5 29 0.001 18.5 1.4 28 3-30 12-39 (121)
222 1v1c_A Obscurin; muscle, sarco 26.5 34 0.0011 17.7 1.5 18 4-21 23-40 (71)
223 3rbg_A Cytotoxic and regulator 26.5 76 0.0026 16.6 3.8 28 3-31 9-36 (124)
224 2epd_A RHO GTPase-activating p 26.4 34 0.0012 17.0 1.6 17 3-19 25-41 (76)
225 2q3z_A Transglutaminase 2; tra 26.4 1.8E+02 0.0063 21.3 5.8 51 12-68 604-661 (687)
226 2ckz_B C25, DNA-directed RNA p 26.3 59 0.002 20.0 2.9 16 5-20 138-153 (218)
227 3rzv_A STAM-binding protein; u 26.2 19 0.00066 22.3 0.6 6 69-74 119-124 (211)
228 2q20_A VK1 O18/O8 germline lig 26.2 73 0.0025 16.2 3.9 28 2-30 10-37 (109)
229 2kks_A Uncharacterized protein 26.1 16 0.00055 20.8 0.3 8 68-75 77-84 (146)
230 2hj1_A Hypothetical protein; s 25.8 21 0.00073 19.4 0.7 11 6-16 73-83 (97)
231 3r4d_A CEA-related cell adhesi 25.6 76 0.0026 17.7 3.2 28 3-31 7-34 (208)
232 2kut_A Uncharacterized protein 25.6 97 0.0033 17.4 6.5 53 8-63 13-72 (122)
233 2kl0_A Putative thiamin biosyn 25.2 22 0.00077 18.0 0.7 12 5-16 48-59 (73)
234 3noi_A Natural cytotoxicity tr 25.2 81 0.0028 16.4 3.3 30 2-31 14-46 (120)
235 1spp_B Major seminal plasma gl 25.2 53 0.0018 17.5 2.3 17 4-20 33-49 (116)
236 2a28_A BZZ1 protein; SH3 domai 25.1 24 0.00083 16.1 0.8 14 4-17 16-29 (54)
237 2v1q_A SLA1, cytoskeleton asse 25.1 24 0.00083 16.4 0.8 14 4-17 18-31 (60)
238 3d8m_A BPP, baseplate protein, 24.9 1.2E+02 0.004 18.2 5.2 59 6-70 80-145 (165)
239 1qfw_M FV, antibody (anti beta 24.8 78 0.0027 16.1 3.4 28 2-30 8-35 (108)
240 1n67_A Clumping factor; DEV-IG 24.8 61 0.0021 21.5 2.9 50 7-63 68-119 (359)
241 1qd7_I S17 ribosomal protein; 24.8 27 0.00094 18.8 1.0 13 6-18 49-61 (89)
242 2cqv_A MLCK, myosin light chai 24.7 78 0.0027 16.1 3.9 28 2-30 14-41 (114)
243 1mqk_L Antibody 7E2 FV fragmen 24.7 85 0.0029 16.5 3.9 28 2-30 8-35 (120)
244 2p26_A Integrin beta-2; hybrid 24.7 45 0.0015 21.5 2.2 16 3-18 81-96 (280)
245 1hr0_W Translation initiation 24.7 19 0.00064 18.2 0.3 15 4-18 44-58 (71)
246 1spp_A Major seminal plasma gl 24.6 54 0.0018 17.3 2.2 17 4-20 30-46 (109)
247 2qsq_A Carcinoembryonic antige 24.5 62 0.0021 17.2 2.5 28 3-31 8-35 (111)
248 1zox_A CLM-1; IG-superfamily, 24.5 80 0.0027 16.1 3.4 29 2-30 8-36 (113)
249 1yn8_A NBP2, NAP1-binding prot 24.5 25 0.00086 16.3 0.8 15 4-18 17-31 (59)
250 1sq2_N Novel antigen receptor; 24.2 85 0.0029 16.3 3.9 29 2-30 7-36 (113)
251 2yc1_B Single chain antibody f 24.2 1E+02 0.0035 17.2 3.9 27 3-30 24-50 (146)
252 2g6f_X RHO guanine nucleotide 24.1 30 0.001 16.1 1.0 16 3-18 19-34 (59)
253 3u6r_L Antibody 1:7 (light cha 23.9 1E+02 0.0035 17.1 3.9 27 3-30 8-34 (143)
254 2x3w_D Syndapin I, protein kin 23.9 27 0.00091 16.3 0.8 13 4-16 19-31 (60)
255 1zx6_A YPR154WP; SH3 domain, p 23.8 26 0.00091 16.3 0.8 16 3-18 17-32 (58)
256 3r8n_Q 30S ribosomal protein S 23.8 33 0.0011 18.0 1.2 13 6-18 49-61 (80)
257 1u9k_A Triggering receptor exp 23.7 48 0.0017 17.2 1.9 29 2-30 6-35 (114)
258 3v2d_T 50S ribosomal protein L 23.7 41 0.0014 19.8 1.7 15 6-20 21-35 (146)
259 3knb_B Obscurin-like protein 1 23.7 86 0.0029 16.2 3.0 28 2-30 20-47 (107)
260 1oot_A Hypothetical 40.4 kDa p 23.6 27 0.00092 16.3 0.8 15 4-18 19-33 (60)
261 1vq8_T 50S ribosomal protein L 23.5 37 0.0013 19.3 1.4 13 4-16 40-52 (120)
262 1j05_L T84.66 antibody, anti-C 23.4 78 0.0027 16.1 2.8 28 3-30 9-39 (111)
263 1uti_A GRB2-related adaptor pr 23.4 27 0.00093 16.2 0.8 14 4-17 17-30 (58)
264 2eqs_A ATP-dependent RNA helic 23.4 47 0.0016 17.7 1.8 16 7-22 61-76 (103)
265 1y43_B Aspergillopepsin II hea 23.2 34 0.0012 20.6 1.3 16 5-20 55-70 (173)
266 2khi_A 30S ribosomal protein S 23.2 47 0.0016 18.0 1.8 16 6-21 75-90 (115)
267 3k0w_A Mucosa-associated lymph 23.2 1.1E+02 0.0039 17.4 4.9 28 2-30 25-52 (218)
268 2iim_A Proto-oncogene tyrosine 23.1 23 0.0008 16.7 0.5 15 4-18 22-36 (62)
269 1jo8_A ABP1P, actin binding pr 23.1 24 0.00081 16.5 0.5 14 4-17 16-29 (58)
270 4eqp_A Thermonuclease; staphyl 23.1 84 0.0029 17.8 3.0 30 4-37 14-43 (143)
271 2ywz_A NEW antigen receptor va 23.0 88 0.003 16.1 3.8 29 2-30 7-36 (111)
272 2vhk_A Thaumatin-I; kinetics o 23.0 65 0.0022 19.9 2.6 21 50-70 29-51 (206)
273 2drm_A Acanthamoeba myosin IB; 23.0 33 0.0011 15.8 1.0 15 4-18 19-33 (58)
274 2ii1_A Acetamidase; 10172637, 22.9 50 0.0017 21.5 2.2 17 2-18 19-35 (301)
275 2bz8_A SH3-domain kinase bindi 22.8 29 0.00098 16.1 0.8 14 4-17 17-30 (58)
276 2dku_A KIAA1556 protein; beta- 22.8 82 0.0028 15.6 4.1 27 2-30 15-41 (103)
277 1pew_A JTO2, A lambda-6 type i 22.7 52 0.0018 16.9 1.9 28 3-30 8-36 (109)
278 1y14_B B16, RPB7, DNA-directed 22.7 71 0.0024 18.6 2.7 15 7-21 137-151 (171)
279 3bj9_1 Immunoglobulin IOTA cha 22.6 59 0.002 16.8 2.2 28 3-30 6-35 (116)
280 2gnc_A SLIT-ROBO RHO GTPase-ac 22.5 29 0.00099 16.3 0.8 15 4-18 22-36 (60)
281 3t0v_A Immunoglobulin variable 22.5 1E+02 0.0034 16.5 3.8 28 3-30 8-36 (123)
282 1cka_A C-CRK N-terminal SH3 do 22.4 29 0.001 16.0 0.8 13 4-16 17-29 (57)
283 1gcq_C VAV proto-oncogene; SH3 22.3 30 0.001 16.7 0.8 15 4-18 26-40 (70)
284 3ayh_B DNA-directed RNA polyme 22.3 60 0.002 19.6 2.3 16 5-20 142-157 (203)
285 3j21_U 50S ribosomal protein L 22.3 38 0.0013 19.2 1.3 13 4-16 43-55 (121)
286 1oaq_L Light chain; antibody, 22.3 95 0.0032 16.2 3.5 28 3-30 8-37 (120)
287 1du5_A Zeamatin; beta sandwich 22.2 69 0.0024 19.8 2.6 21 51-71 25-47 (206)
288 4e6r_A Cytoplasmic protein NCK 22.1 30 0.001 15.9 0.8 15 4-18 17-31 (58)
289 3m45_A Cell adhesion molecule 22.1 83 0.0028 15.4 4.0 27 3-30 14-40 (108)
290 1k4u_S Phagocyte NADPH oxidase 22.1 29 0.00099 16.4 0.7 15 4-18 21-35 (62)
291 1uj0_A Signal transducing adap 22.1 25 0.00087 16.6 0.5 14 4-17 21-34 (62)
292 1sem_A SEM-5; SRC-homology 3 ( 22.1 30 0.001 16.0 0.8 15 4-18 18-32 (58)
293 1dj7_B Ferredoxin thioredoxin 21.9 27 0.00093 18.3 0.6 10 7-16 1-10 (75)
294 2f4l_A Acetamidase, putative; 21.9 52 0.0018 21.5 2.1 18 2-19 30-47 (297)
295 2jte_A CD2-associated protein; 21.9 31 0.0011 16.3 0.8 15 4-18 22-36 (64)
296 3u6r_H Antibody 1:7 (heavy cha 21.9 1.2E+02 0.004 17.1 3.9 28 3-31 11-40 (149)
297 1wi5_A RRP5 protein homolog; S 21.9 52 0.0018 17.9 1.8 17 6-22 67-83 (119)
298 3b9t_A Twin-arginine transloca 21.8 61 0.0021 22.7 2.5 17 2-18 93-109 (484)
299 2xmf_A Myosin 1E SH3; motor pr 21.8 35 0.0012 15.9 1.0 17 3-19 20-36 (60)
300 2fpe_A C-JUN-amino-terminal ki 21.8 31 0.001 16.3 0.8 13 4-16 19-31 (62)
301 3dmm_D T-cell surface glycopro 21.7 1.1E+02 0.0039 16.9 4.2 29 3-31 9-37 (150)
302 3u5e_Y L33, YL33, 60S ribosoma 21.6 42 0.0014 19.3 1.4 13 4-16 47-59 (127)
303 4ayb_E DNA-directed RNA polyme 21.6 50 0.0017 19.3 1.8 16 6-21 135-150 (180)
304 3s35_X Vascular endothelial gr 21.6 68 0.0023 16.5 2.3 28 3-30 16-44 (122)
305 2nwm_A Vinexin; cell adhesion; 21.6 26 0.0009 17.0 0.5 13 4-16 17-29 (65)
306 1zlm_A Osteoclast stimulating 21.5 36 0.0012 15.7 1.0 15 4-18 19-33 (58)
307 2khj_A 30S ribosomal protein S 21.4 54 0.0019 17.5 1.8 17 6-22 75-91 (109)
308 2atp_B T-cell surface glycopro 21.4 96 0.0033 15.9 3.9 29 2-30 5-33 (115)
309 2f0c_A Phage TP901-1 ORF49 (BP 21.4 1.5E+02 0.0052 18.2 6.1 14 8-21 109-122 (191)
310 1z9m_A GAPA225; nectin-like, I 21.4 1.1E+02 0.0037 16.4 3.9 29 2-31 45-73 (145)
311 2yz1_A Tyrosine-protein phosph 21.4 97 0.0033 15.9 3.1 29 2-30 14-42 (120)
312 2lj0_A Sorbin and SH3 domain-c 21.3 27 0.00091 17.2 0.5 15 4-18 22-36 (65)
313 2q87_A CMRF35-H antigen; all-b 21.3 85 0.0029 15.9 2.6 29 2-30 3-31 (110)
314 2vwf_A Growth factor receptor- 21.2 32 0.0011 15.9 0.8 14 4-17 18-31 (58)
315 1wfw_A Kalirin-9A; SH3 domain, 21.2 51 0.0017 17.1 1.5 20 3-22 22-41 (74)
316 1y0m_A 1-phosphatidylinositol- 21.1 37 0.0013 15.9 1.0 15 4-18 19-33 (61)
317 1mfa_H IGG1-lambda Se155-4 FAB 21.1 63 0.0021 16.9 2.1 29 2-30 7-36 (120)
318 1zuu_A BZZ1 protein; SH3 domai 21.1 25 0.00086 16.3 0.3 14 4-17 17-30 (58)
319 2cuc_A SH3 domain containing r 21.0 32 0.0011 16.6 0.8 17 3-19 22-38 (70)
320 2ak5_A RHO guanine nucleotide 21.0 37 0.0013 16.0 1.0 13 4-16 22-34 (64)
321 2wkn_A Formamidase, gamma-lact 21.0 66 0.0023 22.0 2.5 17 2-18 29-45 (409)
322 1dqt_A CTLA4, cytotoxic T lymp 21.0 1E+02 0.0034 15.9 3.0 29 2-30 6-36 (117)
323 3o27_A Putative uncharacterize 20.9 39 0.0013 17.3 1.1 15 6-20 38-52 (68)
324 1w1f_A Tyrosine-protein kinase 20.9 33 0.0011 16.3 0.8 16 4-19 23-38 (65)
325 4dzb_B Vbeta2 (MAIT T cell rec 20.8 1.3E+02 0.0045 17.3 3.9 27 3-30 9-35 (246)
326 2xt1_B Camelid VHH 9; viral pr 20.8 62 0.0021 17.2 2.0 28 3-30 10-38 (121)
327 2dl3_A Sorbin and SH3 domain-c 20.8 33 0.0011 16.5 0.8 13 4-16 23-35 (68)
328 1nz9_A Transcription antitermi 20.7 23 0.00079 16.9 0.2 11 6-16 4-14 (58)
329 1n4x_H Immunoglobulin heavy ch 20.7 65 0.0022 16.8 2.1 28 3-30 8-36 (120)
330 2e6z_A Transcription elongatio 20.7 36 0.0012 16.5 0.9 11 6-16 7-17 (59)
331 1dlf_L Anti-dansyl immunoglobu 20.6 1E+02 0.0034 15.8 4.0 29 2-30 8-40 (113)
332 2j6f_A CD2-associated protein; 20.6 28 0.00097 16.4 0.5 15 4-18 17-31 (62)
333 1xed_A Polymeric-immunoglobuli 20.5 74 0.0025 16.8 2.3 18 2-19 7-24 (117)
334 4a17_S RPL26, 60S ribosomal pr 20.5 45 0.0016 19.3 1.4 13 4-16 46-58 (135)
335 1go3_E DNA-directed RNA polyme 20.5 83 0.0028 18.4 2.7 17 5-21 134-150 (187)
336 2frg_P TREM-like transcript-1; 20.2 58 0.002 17.0 1.8 29 2-30 4-32 (106)
337 2kxc_A Brain-specific angiogen 20.1 29 0.001 16.6 0.5 13 4-16 23-35 (67)
338 1eeq_A Kappa-4 immunoglobulin 20.1 1E+02 0.0035 15.8 3.3 29 2-30 8-41 (114)
339 1k1z_A VAV; SH3, proto-oncogen 20.0 29 0.001 17.2 0.5 16 3-18 33-48 (78)
No 1
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=99.96 E-value=1e-29 Score=178.88 Aligned_cols=75 Identities=40% Similarity=0.699 Sum_probs=70.6
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|+++.++++|||||+.+...+++||+++++||||+||++|+|+|+ +++||||||||.
T Consensus 96 PGP~I~~~~GD~v~V~v~N~l~~~~tsIHwHGl~~~~t~~~DGvp~vTq~pI~PG~sftY~f~~~q~GT~WYHsH~ 171 (580)
T 3sqr_A 96 PGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHF 171 (580)
T ss_dssp SCCCEEEETTCEEEEEEEECCSSCCBCEEETTCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCCCEEEEEEECS
T ss_pred CCceEEEeCCCEEEEEEEECCCCCcceEEecccccCCCccccCCCccccCCCCCCCeEEEEEECCCCcceEEeecc
Confidence 468999999999999999999746899999999998778999999999999999999999999 999999999995
No 2
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=99.96 E-value=1.5e-29 Score=175.29 Aligned_cols=75 Identities=39% Similarity=0.698 Sum_probs=69.6
Q ss_pred CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH 74 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H 74 (75)
++++||+++||+|+|+|+|++++ .+++|||||+.+...+++||+++++||+|+||++|+|+|+ +++||||||||
T Consensus 33 PGP~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH 112 (495)
T 3t6v_A 33 PGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSH 112 (495)
T ss_dssp SCCEEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEEC
T ss_pred cCCeEEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeecc
Confidence 46899999999999999999983 3799999999998778999999999999999999999999 78999999999
Q ss_pred C
Q psy88 75 T 75 (75)
Q Consensus 75 ~ 75 (75)
.
T Consensus 113 ~ 113 (495)
T 3t6v_A 113 L 113 (495)
T ss_dssp S
T ss_pred c
Confidence 5
No 3
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=99.96 E-value=1.7e-29 Score=175.18 Aligned_cols=75 Identities=37% Similarity=0.749 Sum_probs=69.6
Q ss_pred CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH 74 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H 74 (75)
++++||+++||+|+|+|+|++++ .+++|||||+.+...+++||+++++||+|+||++|+|+|+ +++||||||||
T Consensus 32 PGP~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~pI~PG~s~tY~f~~~~~~GT~wYHsH 111 (499)
T 3pxl_A 32 PGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSH 111 (499)
T ss_dssp SCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEEEC
T ss_pred cCCeEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccccCCCCCCCeEEEEEEcCCCCceeeeecc
Confidence 46899999999999999999983 3799999999998778899999999999999999999999 78999999999
Q ss_pred C
Q psy88 75 T 75 (75)
Q Consensus 75 ~ 75 (75)
.
T Consensus 112 ~ 112 (499)
T 3pxl_A 112 L 112 (499)
T ss_dssp S
T ss_pred c
Confidence 5
No 4
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=99.96 E-value=1.6e-29 Score=176.35 Aligned_cols=75 Identities=44% Similarity=0.764 Sum_probs=70.7
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|+++.++++|||||+.+...+|+||+++++||+|+||++++|+|+ +++||||||||+
T Consensus 32 PGP~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I~PG~s~tY~f~~~~~GT~wYHsH~ 107 (552)
T 1aoz_A 32 PGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHL 107 (552)
T ss_dssp SCCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECS
T ss_pred CCCcEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccCCcCCCCeEEEEEECCCCEEEEEEECc
Confidence 368999999999999999999646999999999998888899999999999999999999999 999999999995
No 5
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.7e-29 Score=174.36 Aligned_cols=75 Identities=45% Similarity=0.817 Sum_probs=70.2
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|+++..+++|||||+.+...+++||+++++||+|+||++|+|+|+ . ++||||||||+
T Consensus 32 PGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI~PG~~~~Y~f~~~~~~GT~wYH~H~ 108 (534)
T 1zpu_A 32 PWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHT 108 (534)
T ss_dssp SCCCEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEECCS
T ss_pred CCccEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCcCCCCeEEEEEEeCccceeEEEEEcC
Confidence 468999999999999999999757999999999998777899999999999999999999999 5 99999999995
No 6
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=99.96 E-value=7.8e-29 Score=172.19 Aligned_cols=75 Identities=36% Similarity=0.667 Sum_probs=69.9
Q ss_pred CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH 74 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H 74 (75)
++++||+++||+|+|+|+|+++. .+++|||||+.+...+++||+++++||+|+||++++|+|+ +++||||||||
T Consensus 53 PGP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H 132 (521)
T 1v10_A 53 IAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSH 132 (521)
T ss_dssp SCCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEEC
T ss_pred CCCcEEEeCCCEEEEEEEECCCCccCCCCceEecCCeeccCCCccCCCcceeeCCcCCCCeEEEEEecCCCCccEEEEec
Confidence 36899999999999999999973 6999999999997777899999999999999999999999 78999999999
Q ss_pred C
Q psy88 75 T 75 (75)
Q Consensus 75 ~ 75 (75)
.
T Consensus 133 ~ 133 (521)
T 1v10_A 133 L 133 (521)
T ss_dssp S
T ss_pred c
Confidence 5
No 7
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=99.95 E-value=7.5e-29 Score=173.47 Aligned_cols=75 Identities=37% Similarity=0.580 Sum_probs=70.0
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCC-CCEEEEEEc-CCCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQ-GNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~p-G~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|+++.++++|||||+.+...+++||+++++||+|+| |++++|+|+ +++||||||||.
T Consensus 65 PGP~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I~P~G~~~~Y~f~~~q~GT~wYH~H~ 141 (559)
T 2q9o_A 65 MGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHF 141 (559)
T ss_dssp SCCCEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTTEEEEEEEECCSCEEEEEEECS
T ss_pred cCCcEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCccCCCCCeEEEEEECCCCEEEEEEEcc
Confidence 468999999999999999999437999999999998777899999999999999 999999999 999999999995
No 8
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=99.95 E-value=1.3e-28 Score=170.50 Aligned_cols=74 Identities=41% Similarity=0.752 Sum_probs=69.0
Q ss_pred cccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~ 75 (75)
+++||+++||+|+|+|+|+++. ++++|||||+.+...+++||+++++||+|+||++++|+|+ +++||||||||.
T Consensus 33 GP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~GT~wYH~H~ 112 (503)
T 1hfu_A 33 GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHF 112 (503)
T ss_dssp SCEEEEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEECS
T ss_pred CCcEEEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCcccccCCcCCCCeEEEEEEeCCCCccEEEEecc
Confidence 4799999999999999999972 6899999999997777899999999999999999999999 789999999995
No 9
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.95 E-value=3.5e-28 Score=160.81 Aligned_cols=74 Identities=50% Similarity=0.785 Sum_probs=69.6
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|.++ .+++|||||+.+....++||++.+++|+|+||++++|+|+ +++||||||||.
T Consensus 32 pGP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~ 106 (318)
T 3g5w_A 32 PAPLIHVMEGDDVTVNVTNMTT-LPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHV 106 (318)
T ss_dssp SCCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCS
T ss_pred CCceEEEeCCCEEEEEEEeCCC-CceeEEecCcCCCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccC
Confidence 3679999999999999999998 8999999999988766799999999999999999999999 999999999995
No 10
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.95 E-value=1.7e-27 Score=156.48 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=64.4
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-------------CC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-------------NA 66 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-------------~~ 66 (75)
++++||+++||+|+|+|+|+++ ++++|||||+.+.. ++||++ .+|++|+||++++|+|+ . ++
T Consensus 56 PGP~i~~~~GD~v~v~~~N~l~-~~~siH~HG~~~~~--~~DG~~-~~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~ 131 (299)
T 3t9w_A 56 PGPVLEMWEGDTLEIDLVNTTD-RVLSLHPHGVDYDV--NSDGTL-MNGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTA 131 (299)
T ss_dssp SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG--GGSCCT-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCCC
T ss_pred cCceEEEECCeEEEEEEEECCC-CCccEEeCCcccCC--ccCCCc-cccCccCCCCeEEEEEEeecccccCCCcCCCCCc
Confidence 4689999999999999999999 89999999998764 589987 67999999999999998 4 57
Q ss_pred eeeEEccCC
Q psy88 67 GTHFWHAHT 75 (75)
Q Consensus 67 Gt~~YH~H~ 75 (75)
||||||||+
T Consensus 132 gt~~YH~H~ 140 (299)
T 3t9w_A 132 GYWHYHDHA 140 (299)
T ss_dssp EEEEEECSS
T ss_pred eeEEEecCC
Confidence 999999994
No 11
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.94 E-value=1.5e-27 Score=158.61 Aligned_cols=74 Identities=49% Similarity=0.813 Sum_probs=69.8
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++++|++++||+|+|+|+|.++ .+++|||||+.+...+++||++.++||+|+||++++|.|+ +++||||||||.
T Consensus 33 pGP~I~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~ 107 (339)
T 2zwn_A 33 PGPLIHVQEGDDVIVNVTNNTS-LPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHV 107 (339)
T ss_dssp SCCEEEEETTCEEEEEEEEESS-SCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCS
T ss_pred CCCeEEEECCCEEEEEEEECCC-CCccEEeCCCCcCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecC
Confidence 3679999999999999999998 8999999999998777789999999999999999999999 999999999994
No 12
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.94 E-value=4e-27 Score=153.79 Aligned_cols=70 Identities=33% Similarity=0.570 Sum_probs=65.6
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+++||+++||+|+|+|+|.++ .+++|||||+.. .++||++.+++++|+||++++|+|+ +++||||||||.
T Consensus 65 gP~i~~~~Gd~v~v~~~N~~~-~~~~iH~HG~~~---~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~ 135 (288)
T 3gdc_A 65 GPTLWAREGDALRIHFTNAGA-HPHTIHFHGVHR---ATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQ 135 (288)
T ss_dssp CCEEEEETTCEEEEEEEECSS-SCBCCEESSCCC---GGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCC
T ss_pred CCcEEEeCCCEEEEEEEeCCC-CcccEEeccccc---cccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecC
Confidence 579999999999999999999 899999999973 3689999999999999999999999 999999999995
No 13
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.94 E-value=4.7e-27 Score=154.96 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=63.9
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-------------CC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-------------NA 66 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-------------~~ 66 (75)
++++||+++||+|+|+|+|+++ ++++|||||+.+.. .+||++ .++++|+||++++|+|+ . ++
T Consensus 40 PGP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~--~~dG~~-~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~ 115 (313)
T 3tas_A 40 PGPLIELNEGDTLHIEFENTMD-VPVSLHVHGLDYEI--SSDGTK-QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSA 115 (313)
T ss_dssp SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG--GGSCST-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSC
T ss_pred cCCeEEEECCCEEEEEEEECCC-CCccEeecCCcCCc--cCCCCc-cccCCcCCCCEEEEEEEeccCCccccccccCCCc
Confidence 4689999999999999999999 89999999998864 479988 47899999999999997 4 57
Q ss_pred eeeEEccCC
Q psy88 67 GTHFWHAHT 75 (75)
Q Consensus 67 Gt~~YH~H~ 75 (75)
||||||||+
T Consensus 116 gt~~YH~h~ 124 (313)
T 3tas_A 116 GYWHYHDHV 124 (313)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeecC
Confidence 999999994
No 14
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=99.94 E-value=1.6e-26 Score=150.22 Aligned_cols=71 Identities=28% Similarity=0.467 Sum_probs=65.0
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CC-------------C
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-AN-------------A 66 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~-------------~ 66 (75)
++++||+++||+|+|+|+|.++ .+++|||||+.+.. ++||++ ++||+|+||++++|+|+ .+ +
T Consensus 34 pGP~i~~~~Gd~v~v~~~N~~~-~~~siH~HG~~~~~--~~DG~~-~t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~ 109 (276)
T 3kw8_A 34 PGPLIEVNEGDTLHIEFTNTMD-VRASLHVHGLDYEI--SSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSA 109 (276)
T ss_dssp SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG--GGSCCT-TTTCSBCTTCEEEEEEECCCCEECTTSCEECCSC
T ss_pred cCCeEEEECCCEEEEEEEECCC-CCccEeecCcccCC--ccCCCc-CCcCCCCCCCEEEEEEEcCCccccccCccCCCCC
Confidence 4689999999999999999998 89999999999875 489999 78999999999999999 53 7
Q ss_pred eeeEEccCC
Q psy88 67 GTHFWHAHT 75 (75)
Q Consensus 67 Gt~~YH~H~ 75 (75)
|+||||||+
T Consensus 110 gt~~YH~h~ 118 (276)
T 3kw8_A 110 GYWHYHDHV 118 (276)
T ss_dssp EEEEEECSS
T ss_pred EEEEEecCc
Confidence 999999995
No 15
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=99.94 E-value=1e-26 Score=160.77 Aligned_cols=69 Identities=36% Similarity=0.639 Sum_probs=62.9
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CC--CeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-AN--AGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~--~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|.++ ++++|||||+.++ +++||++ ||+|+||++++|+|+ .+ +||||||||.
T Consensus 80 PGPtIr~~~Gd~v~v~v~N~l~-~~tsiHwHGl~~~--~~~DG~p---q~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~ 151 (481)
T 3zx1_A 80 PAPKIEVFEGDKLEILVKNKLK-EATTIHWHGVPVP--PDQDGSP---HDPILAGEERIYRFEIPQDSAGTYWYHPHP 151 (481)
T ss_dssp SCCBEEEETTCEEEEEEEECSS-SCBCCEEETCCCC--GGGSCCT---TSCBCTTCEEEEEEECCTTCCEEEEEECCC
T ss_pred CCceEEEECCcEEEEEEEeCCC-CCeeEEecCcccC--CccCCCc---cCcCCCCCeEEEEEeCCCCCCceEEEeecC
Confidence 4689999999999999999999 8999999999885 4689986 899999999999999 54 8999999994
No 16
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=99.94 E-value=8.2e-27 Score=159.83 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=63.6
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|+++ ++++|||||+.++.. +||++ ||+|+||++++|+|+ + ++||||||||+
T Consensus 48 pGP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~~~--~DG~~---~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~ 118 (451)
T 2uxt_A 48 LGPTIRVWKGDDVKLIYSNRLT-ENVSMTVAGLQVPGP--LMGGP---ARMMSPNADWAPVLPIRQNAATLWYHANT 118 (451)
T ss_dssp BCCEEEEETTCEEEEEEEECSS-SCBCEEEETCCCCGG--GSCSG---GGCBCTTCEECCEEECCSCSEEEEEEECC
T ss_pred cCceEEEeCCCEEEEEEEECCC-CCccEEECCccCCCC--CCCCC---cCcCCCCCeEEEEEEcCCCCcceEEecCC
Confidence 3689999999999999999999 899999999998764 79987 899999999999999 5 59999999995
No 17
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=99.93 E-value=2.3e-26 Score=157.63 Aligned_cols=67 Identities=30% Similarity=0.571 Sum_probs=62.5
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H 74 (75)
+++||+++||+|+|+|+|+++ ++++|||||+.++ +++||+++ |+|+||++++|+|+ . ++||||||||
T Consensus 37 GP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~--~~~DG~~~---~~i~PG~~~~Y~f~~~~~~GT~wYH~H 105 (448)
T 3aw5_A 37 NPTIILRRGQRVDMTLKNKLT-EPTIVHWHGFDVN--WHNDAHPS---FAITPGESYNYSFDVVNRAGTYLYHPH 105 (448)
T ss_dssp SCEEEEETTCEEEEEEEECSS-SCBCEEEETCCCC--HHHHTCGG---GCBCTTCEEEEEEECCSCSEEEEEEEC
T ss_pred CceEEEeCCCEEEEEEEECCC-CceeEEeCCccCC--CccCCCCC---ccCCCCCEEEEEEEcCCCCCceEeccC
Confidence 689999999999999999999 8999999999986 35899886 89999999999999 5 8999999999
No 18
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=99.92 E-value=2.2e-25 Score=155.54 Aligned_cols=69 Identities=26% Similarity=0.321 Sum_probs=62.3
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|+++ .+++|||||+.++. ++||++ +++|+||++++|+|+ +++||||||||.
T Consensus 67 PGPtI~~~~Gd~v~v~v~N~l~-~~tsiHwHGl~~~~--~~DG~~---~~~i~PG~~~~Y~f~~~~~~GT~WYH~H~ 137 (534)
T 3abg_A 67 PGPTFQVPRGVETVVRFINNAE-APNSVHLHGSFSRA--AFDGWA---EDITEPGSFKDYYYPNRQSARTLWYHDHA 137 (534)
T ss_dssp SEEEEEEETTCCEEEEEEECSS-SCBCEEEETCCCCT--TTTTCS---SSCBSSCSCCCEEECCCSSSCEEEEEECC
T ss_pred cCceEEEeCCcEEEEEEEECCC-CCceEEECCCcCCC--CCCCCC---CCCCCCCCeEEEEEecCCcceeEEEecCc
Confidence 3679999999999999999999 89999999998764 489976 688999999999999 457999999995
No 19
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=99.92 E-value=2.1e-25 Score=154.49 Aligned_cols=68 Identities=32% Similarity=0.520 Sum_probs=62.5
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H~ 75 (75)
+++||+++||+|+|+|+|+++ .+++|||||+.++. ++||++ +|+|+||++++|+|+ + ++||||||||.
T Consensus 47 GP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~~--~~DG~p---~~~i~PG~~~~Y~f~~~~~aGT~wYH~H~ 116 (488)
T 3od3_A 47 GPAVKLQRGKAVTVDIYNQLT-EETTLHWHGLEVPG--EVDGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQ 116 (488)
T ss_dssp CCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCCH--HHHCCT---TCCBCTTCEEEEEEECCSCSEEEEEECCC
T ss_pred CCeEEEeCCeEEEEEEEeCCc-CceeEeecccccCc--ccCCCC---cCcCcCCCeEEEEEecCCCceeEEEEecC
Confidence 679999999999999999999 89999999999874 489987 789999999999999 5 47999999994
No 20
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=99.92 E-value=6.8e-25 Score=161.82 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=65.6
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccC----CCCCCCCCc--ccccccCCCCEEEEEEc-CC--------
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRG----TQYSDGVPF--VTQCPITQGNTFRYQFT-AN-------- 65 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~----~~~~DG~~~--~~~~~i~pG~~~~y~~~-~~-------- 65 (75)
++++||+++||+|+|+|+|.++ ++++|||||+.++. .+|.||+++ ++||+|+||++++|+|+ .+
T Consensus 93 PGP~Ir~~~GD~v~v~v~N~l~-~~tsiHwHGl~~~~~~DG~~~~dg~~g~~~t~~~I~PG~t~tY~f~~~~~~gp~~~d 171 (1065)
T 2j5w_A 93 LGPIIKAETGDKVYVHLKNLAS-RPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGD 171 (1065)
T ss_dssp SCCCEEEETTCEEEEEEEEESS-SCBCCEESSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTS
T ss_pred cCCeEEEeCCeEEEEEEEECCC-CCeeEEeCCccCCcccCCcccCCCCCcccccccccCCCCEEEEEEEeccccCCccCC
Confidence 3689999999999999999999 89999999998863 356777777 78999999999999999 44
Q ss_pred --CeeeEEccCC
Q psy88 66 --AGTHFWHAHT 75 (75)
Q Consensus 66 --~Gt~~YH~H~ 75 (75)
+||||||||+
T Consensus 172 ~~aGT~wYHsH~ 183 (1065)
T 2j5w_A 172 GNCVTRIYHSHI 183 (1065)
T ss_dssp CSEEEEEEECCS
T ss_pred CCceEEEEEecc
Confidence 4999999995
No 21
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.92 E-value=9e-25 Score=143.62 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=60.9
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCccc--------ccccCCCCEEEEEEc-CC-------
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVT--------QCPITQGNTFRYQFT-AN------- 65 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~--------~~~i~pG~~~~y~~~-~~------- 65 (75)
+++||+++||+|+|+|+|.++ ++++|||||+.+.. .+||++... +|+|+||++++|+|+ .+
T Consensus 59 GP~I~v~~Gd~v~v~~~N~l~-~~~siH~HGl~~~~--~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~~~~gp~~~ 135 (306)
T 1sdd_A 59 GPTLYAEVGDIMKVHFKNKAH-KPLSIHAQGIKYSK--FSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHD 135 (306)
T ss_dssp CCCEEEETTCEEEEEEEECSS-SCBCCEEESSCCCT--TTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSS
T ss_pred CCEEEEeCCCEEEEEEEECCC-CcccEeecceeccc--ccCCCccCCCCcccccCCCccCCCCeEEEEEEeCCccCCCCC
Confidence 679999999999999999998 89999999999653 357766532 699999999999999 43
Q ss_pred ---CeeeEEccCC
Q psy88 66 ---AGTHFWHAHT 75 (75)
Q Consensus 66 ---~Gt~~YH~H~ 75 (75)
+||||||||.
T Consensus 136 d~~~GT~wYHsH~ 148 (306)
T 1sdd_A 136 DPPCLTHIYYSYV 148 (306)
T ss_dssp SCSEEEEEEECCS
T ss_pred CCCceEEEEeccC
Confidence 3799999994
No 22
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=99.92 E-value=4.6e-25 Score=153.00 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=63.4
Q ss_pred CcccEEEecCCEEEEEEEeCCCC---------------------CCceEEeCCccccCCCCCCCCCc--ccccccCCC--
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDG---------------------LENTIHWHGIHQRGTQYSDGVPF--VTQCPITQG-- 55 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~---------------------~~~~iH~HG~~~~~~~~~DG~~~--~~~~~i~pG-- 55 (75)
++++||+++||+|+|+|+|+++. .+++|||||+.++ +++||++. +++++|+||
T Consensus 56 PGPtI~~~~Gd~v~v~v~N~L~~~~~~~~~~t~~~~~~~~~~~~~~tsiHwHGl~~~--~~~DG~p~~~i~~g~i~pG~~ 133 (513)
T 2wsd_A 56 PGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTP--DDSDGYPEAWFSKDFEQTGPY 133 (513)
T ss_dssp SCCBEEEETTCCEEEEEEECCCSSCSSCCCTTSCC-----CCCSCCBCEEEETCCCC--GGGSCCTTSCBCGGGSSBCTT
T ss_pred cCceEEECCCCEEEEEEEeCCCccccCccccccccccccccCCCCCcEEEcCCCcCC--CccCCCCcccccCCcccCCCc
Confidence 36899999999999999999972 1899999999887 35899985 578999999
Q ss_pred -CEEEEEEc--CCCeeeEEccCC
Q psy88 56 -NTFRYQFT--ANAGTHFWHAHT 75 (75)
Q Consensus 56 -~~~~y~~~--~~~Gt~~YH~H~ 75 (75)
++++|+|+ +++||||||||+
T Consensus 134 f~~~~Y~f~~~~~~GT~wYH~H~ 156 (513)
T 2wsd_A 134 FKREVYHYPNQQRGAILWYHDHA 156 (513)
T ss_dssp CCCSEEEECCCSCCEEEEEEECC
T ss_pred cceEEEEEecCCCccceEECCCC
Confidence 55599999 579999999995
No 23
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=99.91 E-value=1e-24 Score=148.88 Aligned_cols=68 Identities=28% Similarity=0.466 Sum_probs=61.1
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc---CCCeeeEEccCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT---ANAGTHFWHAHT 75 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~---~~~Gt~~YH~H~ 75 (75)
++++||+++||+|+|+|+|+++ .+++|||||+.++. ++||++ + .|+||++++|+|+ +++||||||||.
T Consensus 45 pGP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~~--~~DG~~-~---~I~PG~~~~Y~f~~~~~~~GT~wYH~H~ 115 (439)
T 2xu9_A 45 PGPTLRVRPRDTVRLTLENRLP-EPTNLHWHGLPISP--KVDDPF-L---EIPPGESWTYEFTVPKELAGTFWYHPHL 115 (439)
T ss_dssp SCCEEEECTTCEEEEEEEECSS-SCBCCEEETCCCCT--TTSCTT-C---CBCTTCEEEEEEECCSSCCEEEEEECCC
T ss_pred cCCEEEEeCCCEEEEEEEECCC-CCcceEeCCCCCCc--cccCCc-c---cCCCCCeEEEEEecCCCCCcceEeccCC
Confidence 3689999999999999999999 89999999998864 689976 3 4999999999998 379999999994
No 24
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=99.91 E-value=1.4e-25 Score=161.15 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=63.2
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc--------ccccccCCCCEEEEEEc-C-------
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--------VTQCPITQGNTFRYQFT-A------- 64 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~--------~~~~~i~pG~~~~y~~~-~------- 64 (75)
++++||+++||+|+|+|+|+++ ++++|||||+.++. ++||++. ++||+|+||++++|+|+ .
T Consensus 73 pGP~Ir~~~GD~v~V~v~N~l~-~~tsIHwHGl~~~~--~~DG~p~~Dg~~~~~vtq~~I~PG~s~tY~f~v~~~~gP~~ 149 (742)
T 2r7e_A 73 LGPTIQAEVYDTVVITLKNMAS-HPVSLHAVGVSYWK--ASEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMA 149 (742)
T ss_dssp SEEEEEECSEEEEECCEECCSS-SCCCCCCSSSCCCS--SSSCCCSSCSCCSSSSSSSSCCTTCEECCEEEECGGGSCCS
T ss_pred cCCeEEEECCCEEEEEEEECCC-CCEeEEecCcccCc--cccCCccCCCCcccccccCcCCCCCeEEEEEEeccccCCCc
Confidence 3579999999999999999999 89999999999764 3566654 77999999999999999 3
Q ss_pred ---CCeeeEEccCC
Q psy88 65 ---NAGTHFWHAHT 75 (75)
Q Consensus 65 ---~~Gt~~YH~H~ 75 (75)
++||||||||+
T Consensus 150 ~d~~~GT~wYHsH~ 163 (742)
T 2r7e_A 150 SDPLCLTYSYLSHV 163 (742)
T ss_dssp SSCSSCCEEECCCS
T ss_pred CCCCcEEEEEccCC
Confidence 46999999995
No 25
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=99.91 E-value=1e-24 Score=152.31 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=59.8
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCC-----------------------------------------ceEEeCCccccCCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLE-----------------------------------------NTIHWHGIHQRGTQ 39 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~-----------------------------------------~~iH~HG~~~~~~~ 39 (75)
++++||+++||+|+|+|+|+++ .+ ++|||||+.+. +
T Consensus 63 PGPti~~~~Gd~v~v~~~N~L~-~~~~~h~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttiHwHGl~~~--~ 139 (612)
T 3gyr_A 63 PGPTIEVRRGQRVRIAWTNRIP-KGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTG--G 139 (612)
T ss_dssp SCCEEEEETTCCEEEEEEECCC-TTCCCSEEEEEECCCSTTSCCGGGSCSCTTCCCCHHHHTCCCCBCEEEETCCCC--T
T ss_pred cCcEEEEeCCcEEEEEEEECCC-CCcccccccccccCCCCCCccccccccccccccccccccCCCCceEEcCCCccC--C
Confidence 4689999999999999999986 43 67899998775 4
Q ss_pred CCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88 40 YSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT 75 (75)
Q Consensus 40 ~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~ 75 (75)
++||++ ||+|+||++|+|+|+ +++||||||||.
T Consensus 140 ~~DGv~---q~~I~PG~~~~Y~f~~~q~~GT~WYHsH~ 174 (612)
T 3gyr_A 140 GNDGWA---DNAVGFGDAQLSEYPNDHQATQWWYHDHA 174 (612)
T ss_dssp TTSCCG---GGCBCTTCEEEEEECCCSCSEEEEEEECC
T ss_pred cccCcc---cCccCCCCCEEEEEEcCCCCceEEEeeCC
Confidence 578876 899999999999999 568999999994
No 26
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.90 E-value=1.3e-24 Score=156.66 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=65.5
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C----------CCeee
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A----------NAGTH 69 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~----------~~Gt~ 69 (75)
++++||+++||+|+|+|+|.++ ++++|||||+.++... .||++. ++++|+||++++|+|+ . ++|||
T Consensus 197 pGP~Ir~~~GD~v~v~~~N~l~-~~~siH~HG~~~~~~~-~dG~~~-~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~ 273 (770)
T 2r7e_B 197 LGPYIRAEVEDNIMVTFRNQAS-RPYSFYSSLISYEEDQ-RQGAEP-RKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAW 273 (770)
T ss_dssp CCCCCCCCSSSCEEEEEECCSS-SCCCCCBTTCCCCCCS-SSCTTT-TSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEE
T ss_pred CCCeEEEEcCCEEEEEEEECCC-CCcceeeccccccccc-CCCCcC-ccCccCCCCeEEEEEEecCccCCccCCCCCeeE
Confidence 3678999999999999999999 8999999999998764 269887 7999999999999999 5 89999
Q ss_pred EEccCC
Q psy88 70 FWHAHT 75 (75)
Q Consensus 70 ~YH~H~ 75 (75)
|||||+
T Consensus 274 wYHsh~ 279 (770)
T 2r7e_B 274 AYSSDV 279 (770)
T ss_dssp EECCCS
T ss_pred EeeccC
Confidence 999995
No 27
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=99.90 E-value=9.5e-24 Score=140.80 Aligned_cols=70 Identities=29% Similarity=0.498 Sum_probs=63.4
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CC-------------Ce
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-AN-------------AG 67 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~-------------~G 67 (75)
+++|++++||+|+|+|+|.++ .+++|||||+.+. .++||++ +++|+|+||++++|.|+ .+ +|
T Consensus 76 GP~I~v~~Gd~v~v~~~N~l~-~~~sih~HG~~~~--~~~DG~~-~t~~~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~G 151 (343)
T 3cg8_A 76 GPLIEVNEGDTLHIEFTNTMD-VRASLHVHGLDYE--ISSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAG 151 (343)
T ss_dssp CCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCC--GGGSCCT-TTTCSBCTTCEEEEEEECCCCEECTTSCEECCSCE
T ss_pred CCEEEEECCCEEEEEEEECCC-CCeeEEecCcccC--CcCCCcc-cccccccCCCEEEEEEEeCCCCcccccccCCCCce
Confidence 579999999999999999998 8999999999887 3689998 77999999999999998 54 48
Q ss_pred eeEEccCC
Q psy88 68 THFWHAHT 75 (75)
Q Consensus 68 t~~YH~H~ 75 (75)
+||||||+
T Consensus 152 t~~YH~h~ 159 (343)
T 3cg8_A 152 YWHYHDHV 159 (343)
T ss_dssp EEEEECSS
T ss_pred EEEEecCc
Confidence 99999994
No 28
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.90 E-value=2.6e-24 Score=152.18 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=54.8
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCccc--------ccccCCCCEEEEEEc-CC------
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVT--------QCPITQGNTFRYQFT-AN------ 65 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~--------~~~i~pG~~~~y~~~-~~------ 65 (75)
++++||+++||+|+|+|+|.++ .+++|||||+.++. ++||++.++ +|+|+||++++|+|+ .+
T Consensus 67 pGP~I~~~~Gd~v~v~~~N~l~-~~~siH~HGl~~~~--~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~ 143 (647)
T 1sdd_B 67 LGPVIRAEVDDVIQVRFKNLAS-RPYSLHAHGLSYEK--SSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPEN 143 (647)
T ss_dssp SCCCEEEETTCEEEEEECCCSS-SCBCCEEETCC-----------------------CCBCTTCCEECCEECCTTTSCCS
T ss_pred cCceEEEeCCCEEEEEEEECCC-CceEEecCcceeCC--CCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCC
Confidence 3689999999999999999999 89999999999863 589999775 899999999999999 43
Q ss_pred Ce----eeEEccCC
Q psy88 66 AG----THFWHAHT 75 (75)
Q Consensus 66 ~G----t~~YH~H~ 75 (75)
+| |||||||+
T Consensus 144 ~G~~c~T~wYHsH~ 157 (647)
T 1sdd_B 144 PGSACRAWAYYSAV 157 (647)
T ss_dssp SSCSEEEEEEECCS
T ss_pred CCCCceEEEEccCC
Confidence 57 99999995
No 29
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=99.88 E-value=6.8e-23 Score=144.96 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=61.5
Q ss_pred CcccEEEecCCEEEEEEEeCCCCC----------------------------------------CceEEeCCccccCCCC
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGL----------------------------------------ENTIHWHGIHQRGTQY 40 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~----------------------------------------~~~iH~HG~~~~~~~~ 40 (75)
++++|++++||+|+|+++|+++.. ++++||||+.+.. .
T Consensus 63 PGPtI~~~~Gd~v~V~~~N~L~~~~~~~~~~~~~p~~~~g~p~~~~~p~~~g~~~~~~~~~~~~~tsiH~HG~~~~~--~ 140 (612)
T 2g23_A 63 PGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTGG--G 140 (612)
T ss_dssp SCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGSCSCTTCCCCHHHHTCCCCBCEEEETCCCCT--T
T ss_pred CCceEEEECCeEeeEEEEECcCCcccccccccccccccCCCcccccccccccccccccccccCCceEEEcCCCCCCC--c
Confidence 367999999999999999999831 2899999998864 4
Q ss_pred CCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88 41 SDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT 75 (75)
Q Consensus 41 ~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~ 75 (75)
+||.+ +|+|+||++++|+|+ +++||||||||.
T Consensus 141 ~DG~p---~~~i~PG~s~~Y~f~~~~~aGT~wYH~H~ 174 (612)
T 2g23_A 141 NDGWA---DNAVGFGDAQLSEYPNDHQATQWWYHDHA 174 (612)
T ss_dssp TSCCG---GGCBCTTCEEEEEECCCSCSCEEEEEECC
T ss_pred cCCCC---cCCCCCCCeEEEEEEecCCCceEEEeccc
Confidence 79976 789999999999999 479999999995
No 30
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=99.88 E-value=1.8e-23 Score=150.21 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=62.7
Q ss_pred CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC-----CCCcccccccCCCCEEEEEEc--CCC-------
Q psy88 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD-----GVPFVTQCPITQGNTFRYQFT--ANA------- 66 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D-----G~~~~~~~~i~pG~~~~y~~~--~~~------- 66 (75)
++++||+++||+|+|+|+|+++ ++++|||||+.+.. +++| |++.+++|+|+||++++|+|+ +++
T Consensus 450 pGP~Ir~~~GD~v~v~~~N~l~-~~~siHwHGl~~~~-~~~DG~~~~G~~~~~~~~I~PG~t~tY~f~~~~~agPg~~d~ 527 (742)
T 2r7e_A 450 LGPLLYGEVGDTLLIIFKNQAS-RPYNIYPHGITDVR-PLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDP 527 (742)
T ss_dssp CCCCCCCBTTCEEECCEECCSS-SCBCCEETTCSEEC-CTTCSCCSSSCSSTTTSCCBSSCEECCEEECCSTTSCCSSSC
T ss_pred CCCeEEEECCCEEEEEEEeCCC-CCcCEEecccccCC-cccccccCCCCcccccccCCCCCeEEEEEEeccccCCcccCC
Confidence 3689999999999999999999 89999999998753 3455 566678999999999999999 444
Q ss_pred --eeeEEccCC
Q psy88 67 --GTHFWHAHT 75 (75)
Q Consensus 67 --Gt~~YH~H~ 75 (75)
||||||||+
T Consensus 528 ~~gT~wYHsH~ 538 (742)
T 2r7e_A 528 RCLTRYYSSFV 538 (742)
T ss_dssp SCCCCEEECCS
T ss_pred CceEEEEecCc
Confidence 499999995
No 31
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=99.84 E-value=3.5e-21 Score=127.45 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=58.0
Q ss_pred cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+++|++++||+|+|+|+|.++. .+++|||||+.. .||.+.. ..|.||++++|.|+ +++||||||||.
T Consensus 69 gP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~-----~dG~~~~--~~i~PG~~~~y~f~~~~~Gt~wyH~h~ 137 (327)
T 1kbv_A 69 GRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATG-----QGGGAAA--TFTAPGRTSTFSFKALQPGLYIYHCAV 137 (327)
T ss_dssp CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGTTT--TCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred CCeEEEeCCCEEEEEEEECCCCCCceeeEeCcccc-----CCCCCcc--eeecCCCEEEEEEECCCCeEEEEEeCC
Confidence 5799999999999999999862 489999999842 5887643 35999999999999 889999999994
No 32
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.84 E-value=5.2e-21 Score=130.17 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=58.1
Q ss_pred cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+++|++++||+|+|+|.|.++. .+++|||||+.. .||.+.. .+|+||++++|+|+ +++||||||||.
T Consensus 59 gp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~-----~dG~~~~--~~i~pg~~~~y~f~~~~~Gt~~yH~H~ 127 (442)
T 2zoo_A 59 GSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTG-----PGGGAES--SFTAPGHTSTFNFKALNPGLYIYHCAT 127 (442)
T ss_dssp CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGGGG--CCBCTTCEEEEEEECCSCEEEEEECCC
T ss_pred CCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcC-----CCCCCcc--EEECCCCEEEEEEEcCCCeEEEEecCC
Confidence 6799999999999999999752 599999999863 4777653 36999999999999 999999999973
No 33
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=99.84 E-value=3.7e-21 Score=127.28 Aligned_cols=68 Identities=24% Similarity=0.211 Sum_probs=56.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+++|++++||+|+|+|.|. .+++||||+.+......||.+.++ .|+||++++|+|+ +++||||||||.
T Consensus 63 gP~i~~~~Gd~v~v~~~N~----~~~~h~Hg~~~~~~~~~~~~~~~~--~i~PG~~~~y~f~~~~~Gt~~yH~h~ 131 (333)
T 1mzy_A 63 GPLMIVHEGDYVELTLINP----PENTMPHNIDFHAATGALGGGGLT--LINPGEKVVLRFKATRAGAFVYHCAP 131 (333)
T ss_dssp CCEEEEETTCEEEEEEEEC----TTCCSCBCCEETTSCSGGGGGGGC--CBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred CCcEEecCCCEEEEEEEEC----CCCcccccceecCCCCCCCCCcee--EeCCCCEEEEEEECCCCEEEEEeecC
Confidence 5789999999999999998 358999999876543344445444 4999999999999 999999999995
No 34
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=99.82 E-value=1.6e-20 Score=124.29 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=53.7
Q ss_pred cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+++|++++||+|+|+|+|.+.. .++.+|+||. .+.||.+.++ .|+||++++|+|+ +++||||||||.
T Consensus 64 gP~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~-----~~~~~~~~~~--~i~pG~~~~y~f~~~~~Gt~~yH~h~ 132 (336)
T 1oe1_A 64 GPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA-----TGALGGAKLT--NVNPGEQATLRFKADRSGTFVYHCAP 132 (336)
T ss_dssp CCCEEEETTCEEEEEEEECTTCCSCBCCEETTS-----CSGGGGGGGC--CBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred CCeEEEcCCCEEEEEEEcCCCCCccccceECCC-----CCCCCCcceE--EeCCCCEEEEEEECCCCeEEEEecCC
Confidence 5799999999999999999741 3566666664 2345555554 4999999999999 899999999994
No 35
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=99.82 E-value=1.5e-20 Score=124.47 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=54.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+++|++++||+|+|+|.|.+ +++||||+.+......||....+ .|.||++++|+|+ +++||||||||.
T Consensus 70 gP~i~v~~Gd~v~v~~~N~~----~~~~~hg~~~~~~~~~~~~~~~~--~i~PG~~~~y~~~~~~~Gt~wyH~h~ 138 (340)
T 2bw4_A 70 GPLMVVHENDYVELRLINPD----TNTLLHNIDFHAATGALGGGALT--QVNPGEETTLRFKATKPGVFVYHCAP 138 (340)
T ss_dssp CCEEEEETTCEEEEEEEECT----TCCSCBCCEETTSCSGGGGGGGC--CBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred CCcEEEcCCCEEEEEEEeCC----CCCccCcceeCCcCCCCCCccce--EeCCCCEEEEEEECCCCeEEEEEcCC
Confidence 57899999999999999987 35777777655432233434343 4999999999999 889999999994
No 36
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=99.73 E-value=9.3e-18 Score=114.10 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=57.5
Q ss_pred cccEEEecCCEEEEEEEeCCC-CCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMD-GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~-~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
.++|++++||+++|+|.|.++ ...++|||||+.. .||.+... .|.||++++|.|. +++|+||||||.
T Consensus 194 gp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~~-----~DG~~~~~--~i~pG~~~~~~~~~~~~G~~~yh~h~ 262 (447)
T 2dv6_A 194 GPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGAAAFT--QTDPGEETVVTFKALIPGIYVYHCAT 262 (447)
T ss_dssp CCCEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGGGGC--CBCTTCEEEEEEECCSCEEEEEECCS
T ss_pred CCeEEecCCCEEEEEEEeCCCCceeEEEeeccccC-----CCCCCccE--EeCCCCEEEEEEECCCCeEEEEEeCC
Confidence 468999999999999999975 2579999999742 58887543 4899999999999 889999999984
No 37
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.69 E-value=1.8e-17 Score=93.47 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=53.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCC--CCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGT--QYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~--~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H 74 (75)
+.+|++++||+|+ |.|..+ .++++||||...+.. ...||.+ ..+..+.||++++|.|+ +++|+||||||
T Consensus 18 p~~i~v~~Gd~V~--~~N~~~-~~H~v~~~~~~~~~~~g~~~~~~~-~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~ 90 (105)
T 3cvb_A 18 PANVTVHPGDTVK--WVNNKL-PPHNILFDDKQVPGASKELADKLS-HSQLMFSPGESYEITFSSDFPAGTYTYYCA 90 (105)
T ss_dssp SSEEEECTTEEEE--EEECSS-CCEEEEECTTSSGGGCHHHHHHHC-EEEEECSTTCEEEEEECTTSCSEEEEEECT
T ss_pred CCEEEEcCCCEEE--EEECCC-CCCeEEEeCCCCCccccccccccc-ccccccCCCCeEEEEEecCCCCeeEEEEeC
Confidence 4689999999985 579987 799999999865421 0012211 23567999999999998 68999999998
No 38
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=99.67 E-value=3.7e-16 Score=101.37 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=58.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC--------CcccccccCCCCEEEEEEc-C---CCeee
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV--------PFVTQCPITQGNTFRYQFT-A---NAGTH 69 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~--------~~~~~~~i~pG~~~~y~~~-~---~~Gt~ 69 (75)
..+|++++||+|+|+|.|... ..+++|+||..+... .+|. ....+..|.||+++++.|. + ++|+|
T Consensus 167 ~p~i~v~~G~~vri~l~N~~~-~~Hp~HlHG~~f~v~--~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w 243 (276)
T 3kw8_A 167 GPDFEATVGDRVEIVMITHGE-YYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAW 243 (276)
T ss_dssp CCCEEEETTCEEEEEEEEESS-CCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEE
T ss_pred CCCEEEecCCEEEEEEecCCC-cceeEEEccceeEEe--ccCccCCCcccccCCccEEeCCCceEEEEEEeccCCCCCeE
Confidence 467999999999999999988 799999999876543 2442 1234567999999999999 5 69999
Q ss_pred EEccCC
Q psy88 70 FWHAHT 75 (75)
Q Consensus 70 ~YH~H~ 75 (75)
|||||.
T Consensus 244 ~~HCH~ 249 (276)
T 3kw8_A 244 MYHCHV 249 (276)
T ss_dssp EEEECS
T ss_pred EEECCC
Confidence 999994
No 39
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=99.63 E-value=9.1e-16 Score=104.32 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=54.3
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+++|++++||+|+|++.|.+. ..+++||||... .++|+|.||++++|.|. .++|+||||||.
T Consensus 54 ~p~i~v~~Gd~v~~~~~N~~~-~~h~~~~~g~~~-----------~~~~~i~pG~~~~~~f~~~~~Gt~~y~~~~ 116 (447)
T 2dv6_A 54 NPTLVVHEGETVQVNLVNGEG-AQHDVVVDQYAA-----------RSAIVNGKNASSTFSFVASKVGEFNYYCSI 116 (447)
T ss_dssp SCCEEEETTCEEEEEEECSSS-SCBCCEETTTTE-----------ECCCBCSTTBEEEEEEECCSCEEEEEECCS
T ss_pred CCeEEEcCCCEEEEEEEcCCC-CceEEEEccCCc-----------ccceecCCCCeEEEEEEcCCCEEEEEEeCC
Confidence 468999999999999999998 679999998632 24688999999999999 889999999983
No 40
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=99.61 E-value=2.8e-16 Score=116.24 Aligned_cols=69 Identities=23% Similarity=0.192 Sum_probs=62.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccC-CCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRG-TQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~-~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++.|++++||+|+|+|.|.. +.+||||+.+.. ..+.||.+.++ |+|.||.+++|.|. +++||||||||+
T Consensus 631 ~P~l~~~~gd~v~~~v~~~g----~~~~~Hgl~~~g~t~~~dG~~~~t-~~i~pg~~~t~~~~~~~~Gt~~~h~h~ 701 (1065)
T 2j5w_A 631 QPGLTMCKGDSVVWYLFSAG----NEADVHGIYFSGNTYLWRGERRDT-ANLFPQTSLTLHMWPDTEGTFNVECLT 701 (1065)
T ss_dssp CCCCEEETTCCEEEEEECCC----STTCCEEEEETTCCEEETTEEESE-EEECTTCEEEEEECCCSCEEEEEEECS
T ss_pred CCceEEeCCCEEEEEEEcCC----CcceEEeeEEeCCceeecCeecce-EeecCCceEEEEEecCCCeEEEEecCC
Confidence 36899999999999999764 359999998877 77899998887 99999999999999 999999999995
No 41
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=99.53 E-value=4.8e-14 Score=93.95 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=57.1
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--------cccccccCCCCEEEEEEc----CCCeeeE
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------FVTQCPITQGNTFRYQFT----ANAGTHF 70 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--------~~~~~~i~pG~~~~y~~~----~~~Gt~~ 70 (75)
.+|++++||+|+|+|.|... ..++||+||..+... .+|.. ...+..|.||+++++.|. +++|+|+
T Consensus 209 ~~l~v~~Ge~vri~l~N~g~-~~HpfHlHGh~f~v~--~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~ 285 (343)
T 3cg8_A 209 PDFEATVGDRVEIVMITHGE-YYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWM 285 (343)
T ss_dssp CCEEEETTCEEEEEEEEESS-CCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEE
T ss_pred ccEEeCCCCEEEEEEEcCCc-cccccEecCcEEEEe--ccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCCeeEE
Confidence 57999999999999999988 899999999876543 23321 123566999999999999 4799999
Q ss_pred EccCC
Q psy88 71 WHAHT 75 (75)
Q Consensus 71 YH~H~ 75 (75)
||||.
T Consensus 286 ~HCHi 290 (343)
T 3cg8_A 286 YHCHV 290 (343)
T ss_dssp EEECS
T ss_pred EeCCC
Confidence 99994
No 42
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=99.45 E-value=5e-13 Score=76.30 Aligned_cols=59 Identities=31% Similarity=0.264 Sum_probs=47.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
+..|++++||+|++.++|... . +||+..+. .|. +..+.||+++++.|. +++|+|+||||
T Consensus 37 p~~i~v~~G~~V~~~~~n~d~-~-----~H~~~i~~----~~~----~~~i~pG~~~~~~f~~~~~G~y~~~C~ 96 (112)
T 1iby_A 37 PETLVVKKGDAVKVVVENKSP-I-----SEGFSIDA----FGV----QEVIKAGETKTISFTADKAGAFTIWCQ 96 (112)
T ss_dssp SCEEEEETTCEEEEEEEECSS-S-----CEEEEEGG----GTE----EEEECTTCEEEEEEECCSCEEEEEBCS
T ss_pred CCEEEEeCCCEEEEEEEECCC-C-----eEEEEEcC----CCc----eeEeCCCCEEEEEEECCCCEEEEEECC
Confidence 467999999999999999976 4 46655432 222 345899999999999 99999999997
No 43
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.44 E-value=7.5e-13 Score=86.77 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=56.1
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC-------CcccccccCCCCEEEEEEc----CCCeeeE
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV-------PFVTQCPITQGNTFRYQFT----ANAGTHF 70 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~-------~~~~~~~i~pG~~~~y~~~----~~~Gt~~ 70 (75)
..+|+++.||+++++|.|..+ ..+++|+||..+.... .++. +......|.||+++++.+. +.+|+|+
T Consensus 189 ~p~l~v~~Ge~Vr~~liN~~~-~~HpfHlHGh~F~v~~-~g~~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~ 266 (299)
T 3t9w_A 189 APTFEANLGERVEWIAIGHGS-NFHTFHLHGHRWLDNR-TGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWM 266 (299)
T ss_dssp CCEEEEETTCEEEEEEEEESS-CCCEEEETTCCEESSS-SSSCCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEE
T ss_pred cccceecCCCEEEEEEEeccc-cceeeeEecceEEEEe-cccccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEE
Confidence 367899999999999999988 7899999997764321 2221 1123455899999999886 5799999
Q ss_pred EccCC
Q psy88 71 WHAHT 75 (75)
Q Consensus 71 YH~H~ 75 (75)
||||.
T Consensus 267 ~HCHi 271 (299)
T 3t9w_A 267 YHCHV 271 (299)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 99995
No 44
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.40 E-value=1.6e-12 Score=85.62 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-------ccccccCCCCEEEEEEc----CCCeeeE
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQFT----ANAGTHF 70 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-------~~~~~i~pG~~~~y~~~----~~~Gt~~ 70 (75)
...|+++.||++++++.|..+ ..+++|+||..+... ..||... .....|.||+++++.+. +.+|+|+
T Consensus 173 ~~~l~v~~Ge~vr~~liN~g~-~~hpfHlHGh~F~v~-~~~~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~ 250 (313)
T 3tas_A 173 GPDFEATVGDRVEFVMITHGE-YYHTFHLHGHRWADN-RTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWM 250 (313)
T ss_dssp CCCEEEETTCEEEEEEEEESS-CCEEEEETTCCEESS-TTSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEE
T ss_pred ccccccccCCEEEEEEecccc-cceeeeecCCeeEEE-EECCccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEE
Confidence 357899999999999999987 899999999876543 2344221 23455899999999987 4699999
Q ss_pred EccCC
Q psy88 71 WHAHT 75 (75)
Q Consensus 71 YH~H~ 75 (75)
||||.
T Consensus 251 ~HCHi 255 (313)
T 3tas_A 251 YHCHV 255 (313)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 99995
No 45
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=99.40 E-value=1.6e-12 Score=73.74 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=47.8
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|..+ .+|++++++. .||........+.||++++|.| +++|+|+|||+
T Consensus 32 P~~i~v~~Gd~V~~--~N~d~-~~H~v~~~~~-------~~g~~~~~~~~~~pG~~~~~tf-~~~G~y~y~C~ 93 (105)
T 2ov0_A 32 TPELHVKVGDTVTW--INREA-MPHNVHFVAG-------VLGEAALKGPMMKKEQAYSLTF-TEAGTYDYHCT 93 (105)
T ss_dssp SSEEEECTTCEEEE--EECSS-SCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE-CSCEEEEEECS
T ss_pred CCEEEECCCCEEEE--EECCC-CCEEEEEcCC-------CCCcccccccccCCCCEEEEEe-CCCEEEEEEeC
Confidence 56899999999765 59877 7899988752 2454434344589999988877 78899999996
No 46
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.39 E-value=2.5e-12 Score=75.95 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=52.3
Q ss_pred cccEEEecCCEEEEEEEeCCCCC-CceEEeCCccc-----------------cCCCCCCCCCcccccccCCCCEEEEEEc
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGL-ENTIHWHGIHQ-----------------RGTQYSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~-~~~iH~HG~~~-----------------~~~~~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
+..|++++||+|+|+|+|... . +|.++.++... ...+..+.........|.||+++++.|.
T Consensus 34 p~~i~v~~G~~V~~~~~N~~~-~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~f~ 112 (139)
T 2aan_A 34 KTELTVSAGQTVTIRFKNNSA-VQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFT 112 (139)
T ss_dssp CSEEEECTTCEEEEEEECCCS-SCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEE
T ss_pred CCeEEECCCCEEEEEEEeCCC-CCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEEEE
Confidence 467999999999999999876 6 88888887431 0000001000011234899999999999
Q ss_pred -CCCeeeEEccCC
Q psy88 64 -ANAGTHFWHAHT 75 (75)
Q Consensus 64 -~~~Gt~~YH~H~ 75 (75)
+++|+|+|||+.
T Consensus 113 ~~~pG~y~f~C~~ 125 (139)
T 2aan_A 113 APAAGTYLYICTV 125 (139)
T ss_dssp CCSSEEEEEECCS
T ss_pred CCCCeEEEEEcCC
Confidence 999999999983
No 47
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.37 E-value=9.6e-13 Score=86.88 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=59.8
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
.+|+++.|++++++|.|... ..+.+|+||..+... ..||.+. .....|.||++++..|. +++|.|++|||.
T Consensus 178 ~~l~v~~G~~vrlrliN~~~-~~h~~hlhGh~f~vi-~~dG~~~~~p~~~dtv~l~pger~~v~~~a~~pG~w~~hCH~ 254 (318)
T 3g5w_A 178 QPIRVKKGDVIRLRLIGAGD-HVHAIHTHGHISQIA-FKDGFPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHV 254 (318)
T ss_dssp CCEEECTTCEEEEEEEECSS-SCEEEEETTSCEEEE-EETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEESS
T ss_pred ccEEeCCCCEEEEEEEeCCC-ceEEEEECCcEEEEE-ecCCcccCCCccccEEEECCCCEEEEEEECCCCeeEEEEecc
Confidence 35899999999999999987 789999999887643 3687542 23556899999999999 999999999994
No 48
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=99.37 E-value=1.3e-12 Score=90.40 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=57.8
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCC-CCCC-------cccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYS-DGVP-------FVTQCPITQGNTFRYQFT-ANAGTHFWHA 73 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~-DG~~-------~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~ 73 (75)
..+++++|++++++|.|... ..|+||+||..+...... +|.+ ...+..|.||++.+..|+ +.+|.|+|||
T Consensus 385 ~~~~~~~G~~v~w~l~N~~~-~~Hp~HlHG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d~pG~w~~HC 463 (481)
T 3zx1_A 385 IDLSSKLGVVEDWIVINKSH-MDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHC 463 (481)
T ss_dssp CCEEEETTCCEEEEEEECSS-SCEEEEETTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCCSCEEEEEEE
T ss_pred ceEEeCCCCEEEEEEEcCCC-CceeEEEeccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcCCCeeEEEEc
Confidence 45899999999999999877 899999999877643210 3421 123556899999999999 9999999999
Q ss_pred CC
Q psy88 74 HT 75 (75)
Q Consensus 74 H~ 75 (75)
|.
T Consensus 464 Hi 465 (481)
T 3zx1_A 464 HI 465 (481)
T ss_dssp SS
T ss_pred CC
Confidence 94
No 49
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=99.35 E-value=1.5e-12 Score=92.41 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=56.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCC-----------CCCC-------------------Ccccccc
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQY-----------SDGV-------------------PFVTQCP 51 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~-----------~DG~-------------------~~~~~~~ 51 (75)
..++++++|++++++|.|... ..|+||+||..+..... .+|. ....+..
T Consensus 471 ~~~~~v~~G~~v~w~l~N~~~-~~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~e~~~kDTv~ 549 (612)
T 2g23_A 471 GLGFTIGEGTHEQWTFLNLSP-ILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQ 549 (612)
T ss_dssp CCCEEEETTCEEEEEEEECSS-SCEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTSSSCBSEEE
T ss_pred CCceEecCCCEEEEEEEeCCC-CCCCeEEcCceEEEecccCcccccccccccCcccccccccccccCCCcccccccCeEE
Confidence 357899999999999999987 89999999988753210 0110 0122445
Q ss_pred cCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88 52 ITQGNTFRYQFT-A-NAGTHFWHAHT 75 (75)
Q Consensus 52 i~pG~~~~y~~~-~-~~Gt~~YH~H~ 75 (75)
|.||++.++.|+ + .+|.|+||||.
T Consensus 550 v~Pg~~~~i~~~~~~~pG~w~~HCHi 575 (612)
T 2g23_A 550 VPGPQGLRVMGKFDGAYGRFMYHCHL 575 (612)
T ss_dssp ECSSEEEEEEEECCSCCEEEEEEESS
T ss_pred ECCCcEEEEEEEeCCCCccEEEEeCc
Confidence 899999999999 7 99999999994
No 50
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.32 E-value=4.1e-12 Score=82.75 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=55.9
Q ss_pred ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCC-----cccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVP-----FVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~-----~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
.+|.++.||++++++.|.... ..+++|+||..+... .+|.. ......|.||++.+..|. +++|+|.||||.
T Consensus 195 ~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~--~~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~ 272 (288)
T 3gdc_A 195 FPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYY--PTGTMLTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHK 272 (288)
T ss_dssp SCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEE--ETTCCSSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSS
T ss_pred cccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEE--cCCCccCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecC
Confidence 368999999999999998751 249999999876532 23321 123456899999999999 999999999994
No 51
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=99.31 E-value=6e-12 Score=85.85 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=57.2
Q ss_pred cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC-----CcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV-----PFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~-----~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++.++.|+.+++.+.|... .+|.||+||..+.... .+|. +...+..|+||+..+..|+ +.+|.|+||||.
T Consensus 349 ~~~~~~g~~~~~~~~N~~~-~~HP~HLHG~~F~Vl~-~~g~~~~~p~~rDTv~v~p~~~v~i~f~adnpG~w~~HCHi 424 (439)
T 2xu9_A 349 DLKGQAQTVEVWEVENQGD-MDHPFHLHVHPFQVLS-VGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHI 424 (439)
T ss_dssp CEEECTTCEEEEEEEECSS-SCEEEEESSCCBEEEE-ETTEECSSCCCBSEEEECTTCEEEEEEECCSCEEEEEEESS
T ss_pred ceecCCCCEEEEEEEcCCC-CCCCceeCCCcEEEEe-eCCCCCCCCCCeEEEEeCCCCEEEEEEEcCCCCCEEEECCc
Confidence 5789999999999999987 8999999998875432 2332 1223556899999999999 999999999994
No 52
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=99.31 E-value=6.4e-12 Score=87.03 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=55.7
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--------ccccccc-CCCCEEEEEEc-CCCeeeEEc
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------FVTQCPI-TQGNTFRYQFT-ANAGTHFWH 72 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--------~~~~~~i-~pG~~~~y~~~-~~~Gt~~YH 72 (75)
.+++++.|+.++|.+.|+....+|.||+||..+.... .+|.+ ...+..| +||+.....|+ +++|.|+||
T Consensus 373 ~~~~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~-~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~adnPG~W~~H 451 (503)
T 1hfu_A 373 SVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVR-SAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFH 451 (503)
T ss_dssp SEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEE-CTTCCCCCCSSBCEESEEECCSTTCEEEEEEECCSCEEEEEE
T ss_pred eEEEccCCCEEEEEEECCCCCCCCCEEEecceEEEEe-cCCCCccccCCCCeeeeEEecCCCceEEEEEEcCCCeeeeEe
Confidence 3589999999999999543227999999998876432 22222 1234568 89999999999 999999999
Q ss_pred cCC
Q psy88 73 AHT 75 (75)
Q Consensus 73 ~H~ 75 (75)
||.
T Consensus 452 CHi 454 (503)
T 1hfu_A 452 CHI 454 (503)
T ss_dssp ESS
T ss_pred cCc
Confidence 994
No 53
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=99.30 E-value=8.7e-12 Score=70.19 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=48.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC----cccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP----FVTQCPITQGNTFRYQFT--ANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~----~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|... .+|++++++...+. .+|.. ......+.||+++++.|+ +.+|+|||||+
T Consensus 19 P~~i~v~~Gd~V~~--~n~~~-~~H~~~~~~~~~~~---~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~ 91 (106)
T 2gim_A 19 PAKLTIKPGDTVEF--LNNKV-PPHNVVFDAALNPA---KSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE 91 (106)
T ss_dssp SSEEEECTTCEEEE--EECSS-SCCCBEECSSSSTT---CCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECT
T ss_pred CCEEEECCCCEEEE--EECCC-CCceEEEeCCCCcc---cccccchhccccceeeCCCCEEEEEEecCCCCceEEEEeC
Confidence 45799999999765 58876 78999988754421 12310 011234889999999997 78999999996
No 54
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=99.30 E-value=6.5e-12 Score=87.35 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=55.0
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--------ccccccc-CCCCEEEEEEc-CCCeeeEEc
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------FVTQCPI-TQGNTFRYQFT-ANAGTHFWH 72 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--------~~~~~~i-~pG~~~~y~~~-~~~Gt~~YH 72 (75)
.+++++.|+.++|.+.| . .+|.||+||..+.... .+|.+ ...+..| +||+.....|+ +++|.|+||
T Consensus 397 ~~~~v~~g~~vei~l~N--~-~~HP~HLHGh~F~Vl~-~~~~~~~n~~~p~~rDTV~V~p~gg~v~Irf~aDNPG~W~~H 472 (521)
T 1v10_A 397 AVISLPANQVIEISIPG--G-GNHPFHLHGHNFDVVR-TPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLH 472 (521)
T ss_dssp TEEEECTTCEEEEEEEC--C-BSCEEEESSCCEEEEE-CTTCSCCCCSSCCEESEEECCBSSCEEEEEEECCSCEEEEEE
T ss_pred eEEEecCCCEEEEEEcC--C-CCCCEEEccceEEEEe-cCCCCccccCCCCeeeeEEeCCCCcEEEEEEEeCCCeeEEEe
Confidence 35889999999999999 5 7999999998876432 22222 1235568 79999999999 999999999
Q ss_pred cCC
Q psy88 73 AHT 75 (75)
Q Consensus 73 ~H~ 75 (75)
||.
T Consensus 473 CHi 475 (521)
T 1v10_A 473 CHI 475 (521)
T ss_dssp ESC
T ss_pred eCh
Confidence 994
No 55
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=99.28 E-value=7.5e-12 Score=87.35 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=55.7
Q ss_pred cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC-------CC----------------CcccccccCCCCEEEE
Q psy88 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD-------GV----------------PFVTQCPITQGNTFRY 60 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D-------G~----------------~~~~~~~i~pG~~~~y 60 (75)
.++++.|+.++|.|.|... .+|.||+||..+....... |. +...+..|+||+....
T Consensus 371 ~~~~~~g~~v~ivi~N~~~-~~HP~HLHGh~F~Vl~~~~~~~~~~~G~p~~~~~~~~~~~~~~p~~RDTv~V~pgg~v~I 449 (534)
T 1zpu_A 371 TFILEKDEIVEIVLNNQDT-GTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVI 449 (534)
T ss_dssp EEEECTTCEEEEEEEECSS-SCEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEEE
T ss_pred EEEeCCCCEEEEEEeCCCC-CCCCeEecCCceEEEeecCCccccccCcccccCccccccccCCCCeeeEEEeCCCCEEEE
Confidence 5889999999999999987 8999999998765322111 20 0112455889999999
Q ss_pred EEc-CCCeeeEEccCC
Q psy88 61 QFT-ANAGTHFWHAHT 75 (75)
Q Consensus 61 ~~~-~~~Gt~~YH~H~ 75 (75)
.|+ +.+|.|+||||.
T Consensus 450 rF~aDNPG~W~~HCHi 465 (534)
T 1zpu_A 450 RFKADNPGVWFFHCHI 465 (534)
T ss_dssp EEECCSCEEEEEEECC
T ss_pred EEEeCCCeeEEEEeCc
Confidence 999 999999999994
No 56
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.28 E-value=1.2e-11 Score=87.55 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=58.9
Q ss_pred ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
++|++++|++++++|.|.... ..+++|+||..+... ..||. ......|.||+++++.|. +++|+|+||||.
T Consensus 239 p~l~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi-~~d~~-~~d~v~l~pg~r~~v~~~~~~pG~w~~hch~ 311 (647)
T 1sdd_B 239 PGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLEN-GTQQH-QLGVWPLLPGSFKTLEMKASKPGWWLLDTEV 311 (647)
T ss_dssp CCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEEC-SSSCE-EESSEEECTTEEEEEEEECCSSEEEEEECCC
T ss_pred CCeEEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEEe-cCCCc-ccceEEECCCeEEEEEEEeccceEeecccCc
Confidence 578999999999999998752 379999999887643 24653 334567999999999999 889999999995
No 57
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.26 E-value=2.8e-11 Score=73.00 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=43.9
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC------CCCccc-ccccCCCC--EEEEEEcCCCeeeEEcc
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD------GVPFVT-QCPITQGN--TFRYQFTANAGTHFWHA 73 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D------G~~~~~-~~~i~pG~--~~~y~~~~~~Gt~~YH~ 73 (75)
++|++++||+|+|+++|..+ ...|.+.+......+.+ ...... ...|.||+ +.+|.|+-++|+|||||
T Consensus 61 p~i~V~~GD~V~~~~tN~~~---~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~~pGtY~y~C 137 (154)
T 2cal_A 61 PTLEIPAGATVDVTFINTNK---GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVC 137 (154)
T ss_dssp CEEEECTTCEEEEEEEECCT---TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEEC
T ss_pred CEEEEeCCCEEEEEEEcCCC---CeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEECCceEEEEC
Confidence 68999999999999999742 12333433322111111 000000 01578999 88887776899999999
Q ss_pred C
Q psy88 74 H 74 (75)
Q Consensus 74 H 74 (75)
+
T Consensus 138 ~ 138 (154)
T 2cal_A 138 Q 138 (154)
T ss_dssp C
T ss_pred C
Confidence 7
No 58
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.24 E-value=1.6e-11 Score=81.45 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=59.2
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
.+|+++.|++++++|.|... ..+.+|+||..+... ..||.+. .....|.||++++..|. +++|.|++|||.
T Consensus 179 ~~~~v~~G~~vrlrliN~~~-~~h~~hlhGh~f~vi-~~DG~~~~~p~~~dtv~l~pg~r~~v~~~~~~pG~w~~hch~ 255 (339)
T 2zwn_A 179 QPLRVKKGDVVKIRFFGAGG-GIHAMHSHGHDMLVT-HKDGLPLDSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHV 255 (339)
T ss_dssp CCEEECTTCEEEEEEEECSS-SCEEEEETTCCEEEE-EETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEECC
T ss_pred ccEEECCCCEEEEEEEeCCC-ceEEEEECCcEEEEE-EeCCeecCCCcEEEEEEECCCCEEEEEEEeCCCeeEEEEEec
Confidence 35899999999999999987 799999999877643 3688532 23556889999999999 999999999994
No 59
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=99.23 E-value=1.5e-11 Score=85.96 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=55.2
Q ss_pred cEEEecCCEEEEEEEeCCC-----CCCceEEeCCccccCCCCCCCC--------------CcccccccCCCCEEEEEEc-
Q psy88 4 PKNVCEGDRVVVDVRNSMD-----GLENTIHWHGIHQRGTQYSDGV--------------PFVTQCPITQGNTFRYQFT- 63 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~-----~~~~~iH~HG~~~~~~~~~DG~--------------~~~~~~~i~pG~~~~y~~~- 63 (75)
.++++.|+.|+|.|.|... ..+|.||+||..+......+|. +...+..|+||+.....|+
T Consensus 418 ~~~~~~g~~v~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~a 497 (552)
T 1aoz_A 418 VYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVA 497 (552)
T ss_dssp CEEECTTCEEEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGGGGGGSCCSSCCEESEEEECTTEEEEEEEEC
T ss_pred EEEecCCCEEEEEEeCCcccccccCCCCCEEEcCCceEEEecccCccCcccccccccCCCCccCeEEeCCCceEEEEEEc
Confidence 4789999999999999863 1469999999886532211221 1123556899999999999
Q ss_pred CCCeeeEEccCC
Q psy88 64 ANAGTHFWHAHT 75 (75)
Q Consensus 64 ~~~Gt~~YH~H~ 75 (75)
+++|.|++|||.
T Consensus 498 DNPG~W~~HCHi 509 (552)
T 1aoz_A 498 DNPGVWAFHCHI 509 (552)
T ss_dssp CSCEEEEEEESS
T ss_pred CCCeEEEEEeee
Confidence 999999999994
No 60
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.22 E-value=3.4e-11 Score=85.29 Aligned_cols=62 Identities=29% Similarity=0.348 Sum_probs=47.4
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
+..|++++||+|++.++|..+ ..-. +||+..+. .|. ...+.||++++|.|. +++|+||||||
T Consensus 512 pp~I~V~~Gd~V~~~ltN~d~-~~Dv--~Hgf~ip~----~gv----~~~i~PG~t~t~~Fta~~pGtY~yhC~ 574 (595)
T 1fwx_A 512 IESFTVKEGDEVTVIVTNLDE-IDDL--THGFTMGN----YGV----AMEIGPQMTSSVTFVAANPGVYWYYCQ 574 (595)
T ss_dssp CSEEEEETTCEEEEEEEECCC-STTC--CEEEEETT----TTE----EEEECTTCEEEEEEECCSCEEEEEECC
T ss_pred CCEEEEECCCEEEEEEEeCCC-CCCc--eeeEEecC----CCc----ceeeCCCCeEEEEEECCCCEEEEEECC
Confidence 578999999999999999854 2111 25554432 222 245899999999999 99999999998
No 61
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=99.22 E-value=3.1e-11 Score=84.33 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=55.5
Q ss_pred cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC----------CcccccccCCCCEEEEEEc--CCCeeeEE
Q psy88 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV----------PFVTQCPITQGNTFRYQFT--ANAGTHFW 71 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~----------~~~~~~~i~pG~~~~y~~~--~~~Gt~~Y 71 (75)
.+.++.|+.+++.|.|.....+|.||+||..+......+|. +...+..|+||+..+..|. +.+|.|+|
T Consensus 376 l~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g~~~~~~~~~~~~~rDTV~v~pg~~v~I~~~~adnpG~w~~ 455 (534)
T 3abg_A 376 LANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWLGRRETVVVEAHYAPFPGVYMF 455 (534)
T ss_dssp CCEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSCCSSSCCCSGGGSCBSEECCCSSEEEEEEEECCSCCEEEEE
T ss_pred eeeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCCCCcCcCCccccCCcCeEEcCCCCEEEEEEEECCCCccEEE
Confidence 35789999999999998742589999999887644322331 1123456889999999987 89999999
Q ss_pred ccCC
Q psy88 72 HAHT 75 (75)
Q Consensus 72 H~H~ 75 (75)
|||.
T Consensus 456 HCHi 459 (534)
T 3abg_A 456 HCHN 459 (534)
T ss_dssp EESC
T ss_pred ecCh
Confidence 9994
No 62
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=99.22 E-value=5.3e-11 Score=82.57 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=53.6
Q ss_pred cEEEecCCEEEEEEE-eCCCCCCceEEeCCccccCCCCCCCC--------CcccccccCC-CCEEEEEEc-CCCeeeEEc
Q psy88 4 PKNVCEGDRVVVDVR-NSMDGLENTIHWHGIHQRGTQYSDGV--------PFVTQCPITQ-GNTFRYQFT-ANAGTHFWH 72 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~-N~~~~~~~~iH~HG~~~~~~~~~DG~--------~~~~~~~i~p-G~~~~y~~~-~~~Gt~~YH 72 (75)
+++++.|+.|+|.|. |... .+|+||+||..+.... .+|. +...+..|+| |+...++|. ++||.|+||
T Consensus 375 v~~~~~g~~V~ivl~~n~~~-~~HP~HLHGh~F~vl~-~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf~adnPG~W~~H 452 (495)
T 3t6v_A 375 VISLPSNSTIEIALPAGAAG-GPHPFHLHGHDFAVSE-SASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLH 452 (495)
T ss_dssp EEEECTTCEEEEEEECCSSS-CCCEEEETTCCEEEEE-CTTCCCCCSSSCCEESEEECCSTTCEEEEEEECCSCEEEEEE
T ss_pred eEEecCCCEEEEEEccCCCC-CCcceeecCCcEEEEe-cCCCCCcccCCCCCccEEEcCCCCcEEEEEEEcCCCeeEEEE
Confidence 489999999999998 5555 7999999998765321 2221 1122445776 999999999 999999999
Q ss_pred cCC
Q psy88 73 AHT 75 (75)
Q Consensus 73 ~H~ 75 (75)
||.
T Consensus 453 CHi 455 (495)
T 3t6v_A 453 CHI 455 (495)
T ss_dssp ESC
T ss_pred ecc
Confidence 994
No 63
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=99.20 E-value=2.7e-11 Score=84.62 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=54.2
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC-------------------------------CCcccccc
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG-------------------------------VPFVTQCP 51 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG-------------------------------~~~~~~~~ 51 (75)
..+.++.|+.+++.|.|... .+|.||+||..+.... .+| ...-.+..
T Consensus 472 ~~~~~~~g~~~~w~i~N~~~-~~HP~HLHG~~F~Vl~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDTv~ 549 (612)
T 3gyr_A 472 LGFTIGEGTHEQWTFLNLSP-ILHPMHIHLADFQVLG-RDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQ 549 (612)
T ss_dssp CCEEEETTCEEEEEEEECSS-SCEEEEESSCEEEEEE-EEEEECTTEETTTTEESSCEEEEEEEECCCCTTCSSCBSEEE
T ss_pred cceEeCCCCEEEEEEEcCCC-CCcCEeECCCcEEEEe-ecCCcCccccccccccccccccccccccCcccccCCCCcEEE
Confidence 45789999999999999988 8999999998764321 000 00012345
Q ss_pred cCCCCEEEEEEc--CCCeeeEEccCC
Q psy88 52 ITQGNTFRYQFT--ANAGTHFWHAHT 75 (75)
Q Consensus 52 i~pG~~~~y~~~--~~~Gt~~YH~H~ 75 (75)
|+||+..+..|+ +.+|.|+||||.
T Consensus 550 v~~~~~v~i~~rfadnpG~w~~HCHi 575 (612)
T 3gyr_A 550 VPGPQGLRVMGKFDGAYGRFMYHCHL 575 (612)
T ss_dssp ECSSEEEEEEEECCSCCEEEEEEESS
T ss_pred ECCCCEEEEEEEeCCCCcceEEcCCC
Confidence 889999999987 889999999994
No 64
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.18 E-value=9e-13 Score=86.47 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=43.9
Q ss_pred ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+.|++++||+++++|.|.... ..+++|+||..+. .||.. ..+..|.||+++++.|. +++|+|+||||.
T Consensus 215 p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~----~dG~~-~dtv~l~pger~~v~~~~~~pG~~~~hch~ 284 (306)
T 1sdd_A 215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLE----QNHHK-ISAITLVSATSTTANMTVSPEGRWTIASLI 284 (306)
T ss_dssp CCCCCCCC------BBCCCSSSCEECCBCSSTTCE----ETTEE-CSCCCEETTCCBC--------CCCCCBCCS
T ss_pred cceEEcCCCEEEEEEEeCCCCCccEEEEECCcEee----eCCEE-cceEEECCCcEEEEEEEcCCCeEEEEEeCC
Confidence 568999999999999999762 3578999997654 37743 34566899999999999 999999999994
No 65
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=99.18 E-value=1.9e-10 Score=63.84 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=46.8
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|..+ .+|++++++...+ +|... .....+.||+++++.|. .+|+|+|||+
T Consensus 17 P~~i~v~~G~~V~~--~n~~~-~~H~~~~~~~~~p-----~~~~~~~~~~~~~~~~pG~~~~~tf~-~~G~y~y~C~ 84 (98)
T 2plt_A 17 PKTLTIKSGETVNF--VNNAG-FPHNIVFDEDAIP-----SGVNADAISRDDYLNAPGETYSVKLT-AAGEYGYYCE 84 (98)
T ss_dssp SSEEEECTTCEEEE--EECSS-CCEEEEECGGGSC-----TTCCHHHHCEEEEECSTTCEEEEECC-SCEEEEEECG
T ss_pred CCEEEECCCCEEEE--EECCC-CceEEEEeCCCCC-----CccccccccccceecCCCCEEEEEeC-CCeEEEEEcC
Confidence 45799999998765 78876 7999999986433 22110 11235889999988765 7899999996
No 66
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=99.16 E-value=1.6e-10 Score=80.22 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=52.8
Q ss_pred cEEEecCCEEEEEEE---eCCCCCCceEEeCCccccCCCCCCCC--------CcccccccCC---CCEEEEEEc-CCCee
Q psy88 4 PKNVCEGDRVVVDVR---NSMDGLENTIHWHGIHQRGTQYSDGV--------PFVTQCPITQ---GNTFRYQFT-ANAGT 68 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~---N~~~~~~~~iH~HG~~~~~~~~~DG~--------~~~~~~~i~p---G~~~~y~~~-~~~Gt 68 (75)
+++++.|+.|+|.|. |... .+|+||+||..+.... .+|. +...+..|+| |+...++|+ ++||.
T Consensus 371 v~~~~~g~~V~ivl~~~~n~~~-~~HP~HLHGh~F~Vl~-~~g~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~adnPG~ 448 (499)
T 3pxl_A 371 VYVLPSNASIEISFPATAAAPG-APHPFHLHGHTFAVVR-SAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGP 448 (499)
T ss_dssp EEEECTTCEEEEEEECCTTSCS-CSCEEEETTCCEEEEE-CTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECCSCEE
T ss_pred eEEecCCCEEEEEEecCcccCC-CCccceecCCcEEEEe-ccCCcccccCCCCccceEEcCCcCCCcEEEEEEEcCCCce
Confidence 589999999999999 5555 7899999998764321 1221 1122344665 999999999 99999
Q ss_pred eEEccCC
Q psy88 69 HFWHAHT 75 (75)
Q Consensus 69 ~~YH~H~ 75 (75)
|+||||.
T Consensus 449 W~~HCHi 455 (499)
T 3pxl_A 449 WFLHCHI 455 (499)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9999994
No 67
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=99.15 E-value=1.4e-10 Score=64.93 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=47.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
+..|+++.||+|++.++|... .++.+...+... ...+.||++.++.|+ +.+|+|.|+|.
T Consensus 27 P~~i~v~~G~tV~~~~~n~d~-~~H~~~~~~~~~-------------~~~~~pg~~~~~~~t~~~~G~Y~y~C~ 86 (100)
T 4hci_A 27 PNVITIPINESTTLLLKNKGK-SEHTFTIKKLGI-------------DVVVESGKEKNITVKPKSAGTYELICR 86 (100)
T ss_dssp SSEEEECTTSCEEEEEEECSS-SCEEEEEGGGTE-------------EEEECTTCEEEEEECCCSCEEEEEECT
T ss_pred CCEEEECCCCEEEEEEEcCCC-ceEEEEEecCCc-------------ceeecCCcceeEEEecccCceEEEECc
Confidence 457999999999999999876 566665443321 123789999999999 99999999994
No 68
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=99.15 E-value=5.2e-11 Score=78.67 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=58.6
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
.+|+++.|++++++|.|......+.+|+||..+... +.||.+. .....|.||++++..+. +++|.||+|||.
T Consensus 214 ~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~vi-~~DG~~~~p~~~d~l~l~pGer~dv~v~~~~pG~y~l~~h~ 290 (327)
T 1kbv_A 214 NALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHS 290 (327)
T ss_dssp GCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEE-EGGGSSCEECSBSEEEECTTEEEEEEEEECSCEEEEEEESS
T ss_pred eeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEEE-EcCCCcCCCCceeEEEECCCCEEEEEEEeCCCeEEEEEecc
Confidence 368999999999999998654689999999876543 3677532 23456899999999999 889999999994
No 69
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=99.13 E-value=4.6e-11 Score=82.92 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=54.1
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCC---------------CCCC---------cccccccCCCCEE
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYS---------------DGVP---------FVTQCPITQGNTF 58 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~---------------DG~~---------~~~~~~i~pG~~~ 58 (75)
..+.++.|+.+++.|.|... .+|.||+||..+...... .|.+ ...+..|+||+..
T Consensus 397 ~~~~~~~g~~~~w~l~N~~~-~~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~ 475 (513)
T 2wsd_A 397 VTETPKVGTTEIWSIINPTR-GTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVL 475 (513)
T ss_dssp CCBCCBTTCEEEEEEEECSS-SCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEE
T ss_pred ccEecCCCCEEEEEEEcCCC-CCcCEeEeCceEEEEEecCcccccccccccccccCCCCCCCccccCcccEEEeCCCCEE
Confidence 34678999999999999887 799999999886532110 1111 1224558899998
Q ss_pred EEEEc--CCCeeeEEccCC
Q psy88 59 RYQFT--ANAGTHFWHAHT 75 (75)
Q Consensus 59 ~y~~~--~~~Gt~~YH~H~ 75 (75)
++.++ +.+|.|+||||.
T Consensus 476 ~i~~~f~dnpG~w~~HCHi 494 (513)
T 2wsd_A 476 RIAATFGPYSGRYVWHCHA 494 (513)
T ss_dssp EEEEECCSCCEEEEEEESC
T ss_pred EEEEEecCCCCCEEEEcCC
Confidence 88888 689999999994
No 70
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=99.08 E-value=2.2e-10 Score=79.49 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=53.7
Q ss_pred cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-------ccccccCCCCEEEEEEc-CC----CeeeEE
Q psy88 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQFT-AN----AGTHFW 71 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-------~~~~~i~pG~~~~y~~~-~~----~Gt~~Y 71 (75)
.+++++|++++++|.|..+..+|+||+||..+.... .+|.+. -.+..|. |++.+..+. +. +|.|+|
T Consensus 393 ~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~-~~g~~~~~~~~~~kDTV~v~-g~~~~i~~~f~~~~~~~G~~m~ 470 (488)
T 3od3_A 393 MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILS-ENGKPPAAHRAGWKDTVKVE-GNVSEVLVKFNHDAPKEHAYMA 470 (488)
T ss_dssp SEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEE-BTTBCCCGGGSSSBSEEEES-SSEEEEEECBCSCCCGGGCEEE
T ss_pred ceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEec-cCCCccccccCCceeEEEeC-CCEEEEEEEeccCCCCCCCEEE
Confidence 479999999999999998436899999998876532 345331 1234477 999999998 43 579999
Q ss_pred ccCC
Q psy88 72 HAHT 75 (75)
Q Consensus 72 H~H~ 75 (75)
|||.
T Consensus 471 HCH~ 474 (488)
T 3od3_A 471 HCHL 474 (488)
T ss_dssp EESS
T ss_pred eCCc
Confidence 9994
No 71
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.07 E-value=7.4e-10 Score=60.48 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=43.9
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|..+ .+|+++.++.... + .....+.||+++++.| +.+|+|+|||+
T Consensus 18 P~~i~v~~Gd~V~~--~n~~~-~~H~v~~~~~~~~------~---~~~~~~~~g~~~~~~f-~~~G~y~~~C~ 77 (91)
T 1bxv_A 18 PSTIEIQAGDTVQW--VNNKL-APHNVVVEGQPEL------S---HKDLAFSPGETFEATF-SEPGTYTYYCE 77 (91)
T ss_dssp SSEEEECTTCEEEE--EECSS-CCEEEEETTCGGG------C---EEEEECSTTCEEEEEC-CSCEEEEEECT
T ss_pred CCEEEECCCCEEEE--EECCC-CCcEEEEeCCCcc------C---cccceeCCCCEEEEEe-CCCEEEEEEeC
Confidence 45789999999865 58765 6889888762100 0 1123488999888866 78999999997
No 72
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.06 E-value=1.5e-09 Score=63.84 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=49.8
Q ss_pred cccEEEecCCEEEEEEEe--CCCCCCceEEeCCcc--cc--------------CCCCCCCCC-cccccccCCCCEEEEEE
Q psy88 2 LYPKNVCEGDRVVVDVRN--SMDGLENTIHWHGIH--QR--------------GTQYSDGVP-FVTQCPITQGNTFRYQF 62 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N--~~~~~~~~iH~HG~~--~~--------------~~~~~DG~~-~~~~~~i~pG~~~~y~~ 62 (75)
+..|+++.||+|+++++| ..+ .+|.++.+... .. ..+..|... ......|.||++.++.|
T Consensus 32 P~~i~v~~G~tV~~~~~N~~~~~-~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~~ 110 (140)
T 1qhq_A 32 QTSLSLPANTVVRLDFVNQNNLG-VQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTF 110 (140)
T ss_dssp CSEEEEETTCEEEEEEEECCSSC-CCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEE
T ss_pred CCeEEECCCCEEEEEEECCCCCC-CceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEEE
Confidence 457999999999999999 665 78888877321 00 000001101 01123588999999999
Q ss_pred c-CCCeeeEEccC
Q psy88 63 T-ANAGTHFWHAH 74 (75)
Q Consensus 63 ~-~~~Gt~~YH~H 74 (75)
. +.+|+|+|+|+
T Consensus 111 ~~~~~G~y~f~C~ 123 (140)
T 1qhq_A 111 RTPAPGTYLYICT 123 (140)
T ss_dssp ECCSSEEEEEECC
T ss_pred EeCCCeeEEEEeC
Confidence 9 99999999996
No 73
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=99.04 E-value=2.3e-10 Score=63.55 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=45.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|... .+|+++.++...+.. ..++.. .....+.||+++++.| +.+|+|+|||+
T Consensus 18 P~~i~v~~G~~V~~--~n~~~-~~H~~~~~~~~~pg~-~~~~~~-~~~~~~~pG~~~~~tf-~~~G~y~~~C~ 84 (98)
T 1pcs_A 18 PSTVTIKAGEEVKW--VNNKL-SPHNIVFDADGVPAD-TAAKLS-HKGLLFAAGESFTSTF-TEPGTYTYYCE 84 (98)
T ss_dssp SSEEEECTTCEEEE--EECSS-CCEEEEECCSSSCHH-HHHHHC-EEEEECSTTCEEEEEC-CSCEEEEEECG
T ss_pred CCEEEECCCCEEEE--EECCC-CCcEEEEeCCCCCcc-cccccc-ccccccCCCCEEEEEc-CCCeEEEEEcC
Confidence 45799999998765 48765 689998876432100 000000 1123588999998877 68999999995
No 74
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=99.02 E-value=5.7e-10 Score=78.22 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=50.3
Q ss_pred cEEEecCCEEEEEEEeCCC----CCCceEEeCCccccCCCCCC---------CC---------------CcccccccCCC
Q psy88 4 PKNVCEGDRVVVDVRNSMD----GLENTIHWHGIHQRGTQYSD---------GV---------------PFVTQCPITQG 55 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~----~~~~~iH~HG~~~~~~~~~D---------G~---------------~~~~~~~i~pG 55 (75)
.+.+.+++++++.+.|... ..+|.||+||..+....... |. +...+..|+||
T Consensus 405 ~~~~~~~~~v~~~vi~n~~~~~~~~~HP~HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~ 484 (559)
T 2q9o_A 405 IVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAG 484 (559)
T ss_dssp EEEECCSSCEEEEEEEECTTSSCCCCEEEEESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTT
T ss_pred EEEcCCCCEEEEEEEeCCCccccCCCCcEEECCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCC
Confidence 3677777777765555432 27999999998765322111 21 11234558899
Q ss_pred CEEEEEEc-CCCeeeEEccCC
Q psy88 56 NTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 56 ~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
+.....|+ +.+|.|+||||.
T Consensus 485 g~v~IrF~adNPG~W~~HCHi 505 (559)
T 2q9o_A 485 GWLLLAFRTDNPGAWLFHCHI 505 (559)
T ss_dssp SEEEEEEECCSCEEEEEEECC
T ss_pred ccEEEEEEcCCCeeEEEEecc
Confidence 99999999 999999999994
No 75
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.02 E-value=1.2e-10 Score=84.26 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=58.3
Q ss_pred ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
..|+++.|++++++|.|.... ..+++|+||..+... ..||. ......|.||++.+..|. +++|.|++|||.
T Consensus 368 ~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv-~~dg~-~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~ 440 (770)
T 2r7e_B 368 PGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVR-KKEEY-KMALYNLYPGVFETVEMLPSKAGIWRVECLI 440 (770)
T ss_dssp CCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECC-SSSCC-EESEEECCTTCCCEEEECCSSCBCCCBCCCS
T ss_pred CCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEE-ecCCc-eeeEEEECCCeEEEEEEEeCCCCceEEEecc
Confidence 458899999999999998641 379999999987754 35653 333566899999999999 999999999995
No 76
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=99.01 E-value=2e-09 Score=59.77 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=45.1
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|+ |.|... .+|+++.++...+ +|... .....+.||+++++.|. .+|+|+|+|+
T Consensus 16 P~~i~v~~G~tV~--~~n~~~-~~H~~~~~~~~~p-----~g~~~~~~~~~~~~~~~~~G~~~~~~f~-~~G~y~~~C~ 85 (99)
T 1byp_A 16 PSDLSIASGEKIT--FKNNAG-FPHNDLFDKKEVP-----AGVDVTKISMPEEDLLNAPGEEYSVTLT-EKGTYKFYCA 85 (99)
T ss_dssp SSEEEECTTEEEE--EEECSS-CCBCCEECTTSSC-----TTCCHHHHSCCTTCCBCSTTCEEEEEEC-SCEEEEEECG
T ss_pred CCEEEECCCCEEE--EEECCC-CcceEEEeCCCCc-----cccccccccccccceeeCCCCEEEEEeC-CCcEEEEEcC
Confidence 4578999999865 478876 7889888874332 22110 11224789999888774 8999999996
No 77
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.98 E-value=8.7e-10 Score=61.05 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=44.4
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc--ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--VTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~--~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|+ |.|... .+|+++.++...+ +|... .....+.||+++++.| +.+|+|+|+|+
T Consensus 18 P~~i~v~~G~~V~--~~n~~~-~~H~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~tf-~~~G~y~y~C~ 83 (97)
T 1b3i_A 18 PKALSISAGDTVE--FVMNKV-GPHNVIFDKVPAG-----ESAPALSNTKLAIAPGSFYSVTL-GTPGTYSFYCT 83 (97)
T ss_dssp SSEEEECTTCEEE--EEECSS-CCCCBEEEECCTT-----SCHHHHCBCCCCCSCSCCEEEEC-CSCSEEEEECS
T ss_pred CCEEEECCCCEEE--EEECCC-CCeEEEEeCCCCc-----cccccccccceecCCCCEEEEEe-CCCeEEEEEcc
Confidence 4579999999865 558765 6788887764331 22111 0123478999988876 78999999996
No 78
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.97 E-value=3.7e-09 Score=58.75 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=44.3
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|... .+|+++.++...+ +|... .....+.||+++++.| +.+|+|+|+|.
T Consensus 16 P~~i~v~~G~tV~~--~n~~~-~~H~v~~~~~~~p-----~~~~~~~~~~~~~~~~~~~G~~~~~tf-~~~G~y~~~C~ 85 (99)
T 1plc_A 16 PSEFSISPGEKIVF--KNNAG-FPHNIVFDEDSIP-----SGVDASKISMSEEDLLNAKGETFEVAL-SNKGEYSFYCS 85 (99)
T ss_dssp SSEEEECTTCEEEE--EECSS-CCBCCEECTTSSC-----TTCCHHHHCCCTTCCBCSTTCEEEEEC-CSCEEEEEECG
T ss_pred CCEEEECCCCEEEE--EECCC-CceEEEEeCCCCc-----ccccccccccccCccccCCCCEEEEEE-CCCceEEEEcC
Confidence 45799999998755 78876 6888887764321 22110 0112478999988866 58999999995
No 79
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=98.96 E-value=1.2e-09 Score=77.13 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=49.7
Q ss_pred ecCCEEEEEEEeCC--CCCCceEEeCCccccCCCCCCCC---------------CcccccccCCCCEEEEEEc-CCCeee
Q psy88 8 CEGDRVVVDVRNSM--DGLENTIHWHGIHQRGTQYSDGV---------------PFVTQCPITQGNTFRYQFT-ANAGTH 69 (75)
Q Consensus 8 ~~Gd~v~i~~~N~~--~~~~~~iH~HG~~~~~~~~~DG~---------------~~~~~~~i~pG~~~~y~~~-~~~Gt~ 69 (75)
+.|+.|+|.|.|.. . .+|+||+||..+.......|. +...+..|+||+....+|+ ++||.|
T Consensus 444 ~~~~~VeiVi~n~~~~~-~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~adNPG~W 522 (580)
T 3sqr_A 444 ANEEWVVYVIEDLTGFG-IWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522 (580)
T ss_dssp --CCEEEEEEEECSSSC-CCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESCSCEEE
T ss_pred CCCcEEEEEEeCCCccc-cceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcCCCeee
Confidence 46999999999987 6 799999999875432111110 1123455889999999999 999999
Q ss_pred EEccCC
Q psy88 70 FWHAHT 75 (75)
Q Consensus 70 ~YH~H~ 75 (75)
++|||.
T Consensus 523 ~~HCHi 528 (580)
T 3sqr_A 523 LLHCHI 528 (580)
T ss_dssp EEEECS
T ss_pred EEEECc
Confidence 999994
No 80
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.96 E-value=2.1e-09 Score=62.73 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=39.1
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++.+.|. + |++........+|.... .+.||+++++.| +.+|+|+|+|-
T Consensus 20 P~~i~V~~GdtV~f~~~~~----~-----H~v~~~~~~~P~g~~~f---~~~pg~t~s~TF-~~pG~y~y~C~ 79 (123)
T 3erx_A 20 PAFVRAEPGDVINFVPTDK----S-----HNVEAIKEILPEGVESF---KSKINESYTLTV-TEPGLYGVKCT 79 (123)
T ss_dssp SSEEEECTTEEEEEEESST----T-----CCCEECTTSSCTTCCCC---BCCTTCCEEEEE-CSCEEEEEECG
T ss_pred CCEEEECCCCEEEEEECCC----C-----ceEEEcCCcCCCCccce---ecCCCCEEEEEe-CCCeEEEEEeC
Confidence 4679999999988876662 3 44332211112443222 267999887777 67899999993
No 81
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=98.92 E-value=2.1e-09 Score=73.04 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=58.0
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
..|+++.|++++++|.|......+++|+||..+... ..||.+. .....|.||++++..+. +++|.|++|||.
T Consensus 204 ~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi-~~DG~~~~p~~~~~~~l~pg~r~~v~v~~~~~G~y~~~~~~ 280 (442)
T 2zoo_A 204 NSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTV-YVEGGSLKNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHS 280 (442)
T ss_dssp GCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEE-EGGGSSCEECSBSEEEECTTEEEEEEEECCSCEEEEEEESS
T ss_pred CceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEE-ecCCccCCCccceEEEECCCeeEEEEEEcCCCCeEEEEecc
Confidence 479999999999999997543679999999876643 3677532 22345889999999999 889999999984
No 82
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.91 E-value=4.4e-09 Score=58.63 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=42.8
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC-------CCcc--cccccCCCCEEEEEEcCCCeeeEEc
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG-------VPFV--TQCPITQGNTFRYQFTANAGTHFWH 72 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG-------~~~~--~~~~i~pG~~~~y~~~~~~Gt~~YH 72 (75)
+..|++++||+|+ |.|... .+|+++++.- .. .++ .+.. ....+.||+++++.| +.+|+|+|+
T Consensus 16 P~~i~v~~G~tV~--~~n~~~-~~H~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf-~~~G~y~y~ 86 (102)
T 1kdj_A 16 PDSITVSAGEAVE--FTLVGE-TGHNIVFDIP---AG--APGTVASELKAASMDENDLLSEDEPSFKAKV-STPGTYTFY 86 (102)
T ss_dssp SSEEEECTTCCEE--EEECSS-SCBCCEECCC---TT--CCHHHHHHHHHTSCCTTCCBBTTBCEEEECC-CSCEEEEEE
T ss_pred CCEEEECCCCEEE--EEECCC-CCeEEEEeCc---cc--ccccccchhhcccccccceecCCCCEEEEEe-CCCeEEEEE
Confidence 4679999999977 458865 6788877631 00 000 0001 123478999888766 889999999
Q ss_pred cC
Q psy88 73 AH 74 (75)
Q Consensus 73 ~H 74 (75)
|+
T Consensus 87 C~ 88 (102)
T 1kdj_A 87 CT 88 (102)
T ss_dssp CS
T ss_pred eC
Confidence 96
No 83
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.89 E-value=2.7e-09 Score=62.62 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=38.1
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++.+.|. + |++........+|.... .+.||+++++.| +.+|+|+|+|-
T Consensus 22 P~~i~V~~GDtVtf~n~~~----~-----H~v~~~~~~~P~g~~~f---~s~pGet~s~TF-~~pG~y~y~C~ 81 (127)
T 3tu6_A 22 PAVIRAQPGDTVTFVAKDK----G-----HNSALMKGGAPEGAETW---KGKINEEITVTL-SKPGVYMYQCA 81 (127)
T ss_dssp SSEEEECTTCEEEEECSSS----S-----CCCEECTTCSCTTCCCC---BCCTTCCCEEEC-CSCEEEEEECT
T ss_pred CCEEEECCCCEEEEEECCC----C-----ceEEEccCcCCCCccce---ecCCCCEEEEEe-CCCeEEEEEeC
Confidence 5689999999977665442 3 44433211112332222 257999877777 68899999993
No 84
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.87 E-value=4.8e-09 Score=61.40 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=39.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|+++.||+|++. |.. .+|++..+... ..+|... ..+.||+++++.| +.+|+|+|+|-
T Consensus 21 P~~i~V~~GDTV~f~--n~~--~~Hnv~~~~~~-----~p~g~~~---~~~~pg~t~s~TF-~~~G~y~Y~C~ 80 (124)
T 3ef4_A 21 PGFVKVEAGDTVKFV--PTD--KSHNAESVREV-----WPEGVAP---VKGGFSKEVVFNA-EKEGLYVLKCA 80 (124)
T ss_dssp SSEEEECTTCEEEEE--CSS--SSCCCEECTTT-----SCTTSCC---CBCCTTCCEEEEC-CSSEEEEEECT
T ss_pred CCEEEECCCCEEEEE--ECC--CCccEEEeCCc-----CCCCccc---cccCCCCEEEEEe-CCCeEEEEEcC
Confidence 468999999997655 543 35555544211 1233222 2367999888777 67899999993
No 85
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.87 E-value=1.2e-08 Score=59.89 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=42.8
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|... .+|++++... .+|........+.||+++++.| +++|+|+|+|-
T Consensus 59 P~~i~V~~GdtV~~--~N~d~-~~H~v~~~~~-------~~g~~~~~s~~l~pG~t~~~tF-~~~G~y~y~C~ 120 (132)
T 3c75_A 59 TPEVTIKAGETVYW--VNGEV-MPHNVAFKKG-------IVGEDAFRGEMMTKDQAYAITF-NEAGSYDYFCT 120 (132)
T ss_dssp SSEEEECTTCEEEE--EECSS-SCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE-CSCEEEEEECS
T ss_pred CCEEEECCCCEEEE--EECCC-CceEEEEeCC-------CCCcccccccccCCCCEEEEEc-CCCEEEEEEeC
Confidence 46799999999875 48876 6776665321 1222222223478999998877 67899999994
No 86
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=98.86 E-value=9.3e-09 Score=67.78 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=49.0
Q ss_pred ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
.+|++++|++++|.+.|.... ..+.+|.|++.+. .||... .....|.||++.+..+. +++|.||||||
T Consensus 225 ~~l~v~~Ger~Rl~n~~~~~~~~~h~i~~h~~~Vi----~dG~~~~~p~~~~dtv~l~pGer~~v~v~a~~pG~y~~~ch 300 (333)
T 1mzy_A 225 GALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVW----ETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNH 300 (333)
T ss_dssp GCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEE----TTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEES
T ss_pred cceEecCCCEEEEEECCCCCccccEEECCCCeEEE----eCCcccCCCccCcceEEECCCceEEEEEEcCCCEEEEEecC
Confidence 459999999999988876431 1233444554432 366431 23456899999999999 88999999999
Q ss_pred C
Q psy88 75 T 75 (75)
Q Consensus 75 ~ 75 (75)
.
T Consensus 301 ~ 301 (333)
T 1mzy_A 301 N 301 (333)
T ss_dssp S
T ss_pred h
Confidence 4
No 87
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=98.86 E-value=1.1e-08 Score=67.63 Aligned_cols=70 Identities=16% Similarity=0.045 Sum_probs=49.8
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAHT 75 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~ 75 (75)
..|++++|++++|.+.|... .....|.||..+... .||... .....|.||++++..+. +++|.||+|||.
T Consensus 231 ~~l~v~~G~r~Rl~n~~~~~-~~~~~~i~gh~~~Vi--~dG~~~~~p~~~~dtv~l~pGer~~v~v~~~~pG~y~~~~h~ 307 (340)
T 2bw4_A 231 HALTAAVGERVLVVHSQANR-DTRPHLIGGHGDYVW--ATGKFRNPPDLDQETWLIPGGTAGAAFYTFRQPGVYAYVNHN 307 (340)
T ss_dssp GCEEEETTCEEEEEEEESSS-CBCEEEETCCEEEEE--TTCCTTSCCEEEESCCCBCTTEEEEEEEECCSCEEEEEEESS
T ss_pred CceEcCCCCEEEEEECCCCC-ccceEEecCcceEEe--CCCcccCCccccceEEEeCCCceEEEEEECCCCeeeEEEcCc
Confidence 67999999999988877654 333333455444322 366431 23456899999999999 889999999994
No 88
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=98.82 E-value=3.3e-09 Score=72.70 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=50.6
Q ss_pred cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC-------cccccccCCCCEEEEEEc-CCCee----eEE
Q psy88 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP-------FVTQCPITQGNTFRYQFT-ANAGT----HFW 71 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~-------~~~~~~i~pG~~~~y~~~-~~~Gt----~~Y 71 (75)
.+.++.|+++++.|.|. .+|.||+||..+.... .||.+ ...+..| |++.+..|+ +++|. |+|
T Consensus 348 ~~~~~~G~~~~~~l~N~---~~HP~HLHGh~F~Vl~-~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~dnpg~~~g~w~~ 421 (451)
T 2uxt_A 348 DVTAQQGTWERWTVRAD---EPQAFHIEGVMFQIRN-VNGAMPFPEDRGWKDTVWV--DGQVELLVYFGQPSWAHFPFYF 421 (451)
T ss_dssp CEEEETTCEEEEEEEEE---EEEEEEETTCEEEEEE-ETTBCCCGGGSSCBSEEEE--EEEEEEEEECCSCCBTTBCEEE
T ss_pred cEEcCCCCEEEEEEECC---CCcCeEECCceEEEEe-eCCcCCCcccCCCccEEEE--CCEEEEEEEeCCCCCCCCceEE
Confidence 58999999999999997 4899999998876432 35532 1123345 888888998 77777 999
Q ss_pred ccCC
Q psy88 72 HAHT 75 (75)
Q Consensus 72 H~H~ 75 (75)
|||.
T Consensus 422 HCHi 425 (451)
T 2uxt_A 422 NSQT 425 (451)
T ss_dssp EESS
T ss_pred eCCc
Confidence 9994
No 89
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.77 E-value=5.9e-08 Score=53.86 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=43.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|... .+|++....-.. .+|... .....+.||+++++.| +.+|+|+|+|-
T Consensus 17 P~~i~v~~GdtV~~--~n~~~-~~H~v~~~~~~~-----p~g~~~~~~~~~~~~~~~g~~~~~tf-~~~G~y~y~C~ 84 (98)
T 1iuz_A 17 PSKISVAAGEAIEF--VNNAG-FPHNIVFDEDAV-----PAGVDADAISYDDYLNSKGETVVRKL-STPGVYGVYCE 84 (98)
T ss_dssp SSEEEECTTCEEEE--EECSS-CCEEEEECTTSS-----CTTCCHHHHCEEEEECSTTCEEEEEC-CSCEEEEEECT
T ss_pred CCEEEECCCCEEEE--EECCC-CCEEEEEeCCCC-----ccccccccccccccccCCCCEEEEEc-CCCEEEEEEch
Confidence 46799999999665 58765 677776554211 123211 0112478999888877 78999999994
No 90
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=98.75 E-value=1.1e-08 Score=70.07 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=49.6
Q ss_pred EE-EecCCEEEEEEEeCC-CCCCceEEeCCccccCCCCCCCCC-------------------cccccccCCCCEEEEE--
Q psy88 5 KN-VCEGDRVVVDVRNSM-DGLENTIHWHGIHQRGTQYSDGVP-------------------FVTQCPITQGNTFRYQ-- 61 (75)
Q Consensus 5 i~-~~~Gd~v~i~~~N~~-~~~~~~iH~HG~~~~~~~~~DG~~-------------------~~~~~~i~pG~~~~y~-- 61 (75)
+. ++.|+.+++.|.|.. . .+|.||+||..+.... .+|.. ...+..|+||++.+..
T Consensus 340 ~~~~~~g~~v~~~i~N~~~~-~~HP~HLHG~~F~Vl~-~~G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vr 417 (448)
T 3aw5_A 340 FEHVSVEGVELWEIVNDKAS-MPHPMHLHGFPMWIIE-RKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVN 417 (448)
T ss_dssp CCCEEECEEEEEEEEECSSS-CCEEEEESSSCBEEEE-EESCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEE
T ss_pred eeccCCCCeEEEEEEcCCCC-CCcCEEECCceEEEEE-ecCCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEE
Confidence 45 899999999999998 6 7999999998865432 23321 1234558899999888
Q ss_pred Ec----CCCeeeEEccCC
Q psy88 62 FT----ANAGTHFWHAHT 75 (75)
Q Consensus 62 ~~----~~~Gt~~YH~H~ 75 (75)
|. +.+ |+||||.
T Consensus 418 F~~~~adnp--w~~HCHi 433 (448)
T 3aw5_A 418 FDAKKRGQL--FPFHCHN 433 (448)
T ss_dssp ECGGGTTCE--EEEEESS
T ss_pred ecccCCCCc--EEEEcCC
Confidence 53 244 9999994
No 91
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.68 E-value=4.5e-08 Score=57.50 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=44.6
Q ss_pred cccEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCC--------------------CCCCCCCcccccccCCCCEEEE
Q psy88 2 LYPKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGT--------------------QYSDGVPFVTQCPITQGNTFRY 60 (75)
Q Consensus 2 ~~~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~--------------------~~~DG~~~~~~~~i~pG~~~~y 60 (75)
+..|.+++| |+|+|+|+|... .+...=-|++..... +..|.........|.||++.++
T Consensus 17 p~~i~V~~G~~~vtv~~~N~g~-~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~sv 95 (129)
T 1cuo_A 17 TRSISVPASCAEFTVNFEHKGH-MPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSV 95 (129)
T ss_dssp CSEEEEETTCSEEEEEEEECSS-SCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEE
T ss_pred cCeEEEcCCCeEEEEEEEECCC-CcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEEE
Confidence 457999999 999999999865 330000133321110 0011100011234789999999
Q ss_pred EEc-C---CCeeeEEcc
Q psy88 61 QFT-A---NAGTHFWHA 73 (75)
Q Consensus 61 ~~~-~---~~Gt~~YH~ 73 (75)
.|. . ++|+|+|.|
T Consensus 96 tf~~~~~~~~G~Y~f~C 112 (129)
T 1cuo_A 96 KFKVSALSKDEAYTYFC 112 (129)
T ss_dssp EEEGGGCCTTSCEEEEC
T ss_pred EEeccccCCCceEEEEe
Confidence 999 7 999999999
No 92
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.68 E-value=6.6e-08 Score=56.27 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=36.8
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|... + |.+........+|.... ...||+++++.| +.+|+|+|+|-
T Consensus 20 P~~i~V~~GdtV~f--~~~~~--~-----H~v~~~~~~~p~~~~~~---~~~pG~t~~~tF-~~~G~y~y~C~ 79 (123)
T 1paz_A 20 PAYIKANPGDTVTF--IPVDK--G-----HNVESIKDMIPEGAEKF---KSKINENYVLTV-TQPGAYLVKCT 79 (123)
T ss_dssp SSEEEECTTCEEEE--EESSS--S-----CCCEECTTCSCTTCCCC---BCCTTCCEEEEC-CSCEEEEEECT
T ss_pred CCEEEECCCCEEEE--EECCC--C-----eEEEEecccCCCCccce---ecCCCCEEEEEe-CCCEEEEEEeC
Confidence 46799999999765 55532 3 44333211112332222 256899877666 67899999993
No 93
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.67 E-value=1.4e-07 Score=53.23 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=40.6
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|+++.||+|++. |... .+|++...... .|........+.||+++++.| +.+|+|.|+|-
T Consensus 33 P~~i~V~~G~tV~~~--N~d~-~~H~v~~~~~~-------~~~~~~~s~~l~~g~~~~~tf-~~~G~y~~~C~ 94 (106)
T 1id2_A 33 TPEVTIKAGETVYWV--NGEV-MPHNVAFKKGI-------VGEDAFRGEMMTKDQAYAITF-NEAGSYDYFCT 94 (106)
T ss_dssp SSEEEECTTCEEEEE--ECSS-SCBCCEECTTT-------SSSSCEECCCBCTTEEEEEEE-CSCEEEEEECS
T ss_pred CCEEEECCCCEEEEE--ECCC-CcEEEEEeCCC-------CCcccccccccCCCCEEEEEe-CCCEEEEEEeC
Confidence 467999999998654 8765 55555443211 111111122478999988877 68899999994
No 94
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.65 E-value=6.2e-08 Score=56.38 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=37.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|+ |.|... + |.+........||.... .+.||+++++.| +.+|+|+|+|-
T Consensus 20 P~~i~V~~GdtV~--f~n~~~--~-----H~v~~~~~~~p~~~~~~---~~~pG~t~~~tF-~~~G~y~y~C~ 79 (123)
T 1pmy_A 20 PALVRLKPGDSIK--FLPTDK--G-----HNVETIKGMAPDGADYV---KTTVGQEAVVKF-DKEGVYGFKCA 79 (123)
T ss_dssp SSEEEECTTCEEE--EECSSS--S-----CCCEECTTSSCTTCCCC---BCCTTSCEEEEC-CSCEEEEEECS
T ss_pred CCEEEECCCCEEE--EEECCC--C-----cEEEEecccCCCCccce---ecCCCCEEEEEe-CCCeEEEEEeC
Confidence 4679999999965 456532 3 44432211112332222 267999877666 67899999993
No 95
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.63 E-value=1.1e-07 Score=55.23 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=37.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H 74 (75)
+..|++++||+|++ .|... .|++.... ....+|.... .+.||+++++.| +.+|+|+|+|-
T Consensus 20 P~~i~V~~GdtV~f--~n~d~--~H~v~~~~-----~~~p~~~~~~---~~~~g~t~~~tF-~~~G~y~y~C~ 79 (122)
T 2ux6_A 20 PASLKVAPGDTVTF--IPTDK--GHNVETIK-----GMIPDGAEAF---KSKINENYKVTF-TAPGVYGVKCT 79 (122)
T ss_dssp SSEEEECTTEEEEE--EESSS--SCCCEECT-----TCSCTTCCCC---BCCTTCCEEEEE-CSCEEEEEEET
T ss_pred CCEEEECCCCEEEE--EECCC--CcEEEEcc-----cccCCCccee---ecCCCCEEEEEe-CCCEEEEEEeC
Confidence 45799999998665 56632 44443322 1112332222 357899887777 67899999994
No 96
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.62 E-value=3.9e-08 Score=60.11 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=45.0
Q ss_pred cccEEE-ecCCEEEEEEEeCCCCCCceEEeCCccccCC-------------------CCCCCCCcccccccCCCCEEEEE
Q psy88 2 LYPKNV-CEGDRVVVDVRNSMDGLENTIHWHGIHQRGT-------------------QYSDGVPFVTQCPITQGNTFRYQ 61 (75)
Q Consensus 2 ~~~i~~-~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~-------------------~~~DG~~~~~~~~i~pG~~~~y~ 61 (75)
+..|.| +.||+|+|+|+|... .+..-=-|++..... +..|.........|.||+++++.
T Consensus 57 P~~itV~kaG~~Vtv~~~N~g~-~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~svt 135 (167)
T 3ay2_A 57 TKDIQVSKACKEFTITLKHTGT-QPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLT 135 (167)
T ss_dssp CSEEEEETTCSSEEEEEEECSC-SCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred cceEEEecCCCEEEEEEEECCC-CccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEEEE
Confidence 356899 999999999999976 430000133322110 00011000112347999999999
Q ss_pred Ec-C--CCeeeEEccC
Q psy88 62 FT-A--NAGTHFWHAH 74 (75)
Q Consensus 62 ~~-~--~~Gt~~YH~H 74 (75)
|. . ++|+|+|+|-
T Consensus 136 f~~~~lkpG~Y~f~Ct 151 (167)
T 3ay2_A 136 LDPAKLADGDYKFACT 151 (167)
T ss_dssp ECGGGGTTSCEEEECC
T ss_pred EecCCCCCcEEEEEcC
Confidence 99 6 8999999993
No 97
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=98.55 E-value=3e-07 Score=60.54 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=48.3
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe-CCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW-HGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~-HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
..|.+++|++++|...|... ...+|. ||..+... .||... .....|.||++++..+. +++|.|++|||
T Consensus 225 ~~l~v~~GervRlin~~~~~--~~~~~~i~gh~~~Vi--~DG~~~~p~~~~~dtv~i~pGer~dvlv~~~~pG~y~~~~h 300 (336)
T 1oe1_A 225 NALTAKVGETVLLIHSQANR--DTRPHLIGGHGDWVW--ETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNH 300 (336)
T ss_dssp GCEEEETTCEEEEEEEESSS--CBCEEETTCCEEEEE--TTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEES
T ss_pred cceEcCCCCEEEEEecCCCC--ccceEEECCcCceEe--CCCcCcCCccccceEEEECCCCcEEEEEEcCCCceEEEEec
Confidence 57999999999876555532 334343 45443322 377532 12456899999999999 88999999999
Q ss_pred C
Q psy88 75 T 75 (75)
Q Consensus 75 ~ 75 (75)
.
T Consensus 301 ~ 301 (336)
T 1oe1_A 301 N 301 (336)
T ss_dssp S
T ss_pred h
Confidence 4
No 98
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=98.52 E-value=8e-07 Score=52.06 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=44.4
Q ss_pred cccEEE-ecCCEEEEEEEeCCCCCC-----ceEEe--CCcc-------ccCCCCC-----CCCCcc-cccccCCCCEEEE
Q psy88 2 LYPKNV-CEGDRVVVDVRNSMDGLE-----NTIHW--HGIH-------QRGTQYS-----DGVPFV-TQCPITQGNTFRY 60 (75)
Q Consensus 2 ~~~i~~-~~Gd~v~i~~~N~~~~~~-----~~iH~--HG~~-------~~~~~~~-----DG~~~~-~~~~i~pG~~~~y 60 (75)
+..|.+ +.||+|+|+|+|... .+ |.+-+ .+.. +...... |....+ ....|.||++.++
T Consensus 17 p~~i~V~k~G~~vtv~~~N~g~-~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~sv 95 (128)
T 1nwp_A 17 TKDIAIDKSCKTFTVELTHSGS-LPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSV 95 (128)
T ss_dssp CSEEEECTTCSEEEEEEEECSS-CCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEE
T ss_pred cCEEEEecCCCEEEEEEEECCC-CcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEEEE
Confidence 457899 999999999999875 43 44332 1100 0000000 100001 1224899999999
Q ss_pred EEc-C--CCee-eEEccC
Q psy88 61 QFT-A--NAGT-HFWHAH 74 (75)
Q Consensus 61 ~~~-~--~~Gt-~~YH~H 74 (75)
.|. . .+|+ |+|.|-
T Consensus 96 tf~~~~l~~G~~Y~f~C~ 113 (128)
T 1nwp_A 96 TFDVSKLAAGEKYGFFCS 113 (128)
T ss_dssp EEEGGGSCTTSCEEEECC
T ss_pred EEeccccCCCceEEEEEC
Confidence 999 6 7887 999993
No 99
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=98.50 E-value=8.4e-07 Score=52.00 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=43.9
Q ss_pred cccEEE-ecCCEEEEEEEeCCCCCC-----ceEEeC--Cccc-------------cCCCCCCCCCcccccccCCCCEEEE
Q psy88 2 LYPKNV-CEGDRVVVDVRNSMDGLE-----NTIHWH--GIHQ-------------RGTQYSDGVPFVTQCPITQGNTFRY 60 (75)
Q Consensus 2 ~~~i~~-~~Gd~v~i~~~N~~~~~~-----~~iH~H--G~~~-------------~~~~~~DG~~~~~~~~i~pG~~~~y 60 (75)
+..|.+ ++||+|+|+|+|... .+ |.+-+= |... .-.+..|..-......|.||++.++
T Consensus 17 p~~i~V~k~G~~vtv~~~N~g~-~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~sv 95 (129)
T 2ccw_A 17 VKEIVVDKSCKQFTMHLKHVGK-MAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSV 95 (129)
T ss_dssp CSEEEECTTCSEEEEEEEECSC-CCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEE
T ss_pred cceEEEecCCCEEEEEEEECCC-cccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEEEE
Confidence 457899 999999999999975 43 433221 1000 0000011100001234799999999
Q ss_pred EEc-C--CCee-eEEccC
Q psy88 61 QFT-A--NAGT-HFWHAH 74 (75)
Q Consensus 61 ~~~-~--~~Gt-~~YH~H 74 (75)
.|. . .+|. |+|.|-
T Consensus 96 tf~~~~l~~G~~Y~f~C~ 113 (129)
T 2ccw_A 96 TFDVSKIAAGENYAYFCS 113 (129)
T ss_dssp EEEGGGSCTTCCEEEECC
T ss_pred EEeccccCCCceEEEEeC
Confidence 999 7 7876 999993
No 100
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.44 E-value=8.1e-07 Score=63.23 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=44.7
Q ss_pred cccEEEecCCEEEEEEEeCCC--CCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMD--GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~--~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
+..|++++||+|++.++|... ... ||+..+. .|.. ..+.||++.++.|. +++|+|+|+|.
T Consensus 557 P~eI~VP~GdtVrfiLTN~D~veDVi-----HSF~IPs----lGIK----~DaiPGrtnsvtFtadkPGvY~y~CS 619 (638)
T 3sbq_A 557 VQEFTVKQGDEVTVTITNIDQIEDVS-----HGFVVVN----HGVS----MEISPQQTSSITFVADKPGLHWYYCS 619 (638)
T ss_dssp CCEEEEETTCEEEEEEEECCCSTTCC-----EEEEETT----TTEE----EEECTTCEEEEEEECCSCEEEEEECC
T ss_pred CCEEEEecCceeEEEEecCCcCCCce-----eeeEecC----CCce----eeeCCCCeEEEEEEcCCCEEEEEECC
Confidence 467999999999999999732 134 4443331 1211 23789999999999 99999999995
No 101
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=98.43 E-value=1.7e-06 Score=50.68 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=44.5
Q ss_pred cccEEE-ecCCEEEEEEEeCCCCCC-----ceEEeCCcc---------------ccCCCCCCCCCcccccccCCCCEEEE
Q psy88 2 LYPKNV-CEGDRVVVDVRNSMDGLE-----NTIHWHGIH---------------QRGTQYSDGVPFVTQCPITQGNTFRY 60 (75)
Q Consensus 2 ~~~i~~-~~Gd~v~i~~~N~~~~~~-----~~iH~HG~~---------------~~~~~~~DG~~~~~~~~i~pG~~~~y 60 (75)
+..|.+ +.||+|+|+++|... .+ |.+-+=.-. ..-.+..|..-......|.||+++++
T Consensus 16 p~~i~V~k~G~~vtv~~~N~g~-~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~~v 94 (128)
T 2iaa_C 16 TKSIVVDKTCKEFTINLKHTGK-LPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSV 94 (128)
T ss_dssp CSEEEECTTCSEEEEEEEECSC-SCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEE
T ss_pred cCEEEEecCCcEEEEEEEECCC-CcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEEEE
Confidence 457899 999999999999975 44 443321100 00000011100011234799999999
Q ss_pred EEc-C--CCee-eEEccC
Q psy88 61 QFT-A--NAGT-HFWHAH 74 (75)
Q Consensus 61 ~~~-~--~~Gt-~~YH~H 74 (75)
.|. . .+|+ |+|.|-
T Consensus 95 tf~~~~l~~G~~Y~f~C~ 112 (128)
T 2iaa_C 95 TFDVSKLKEGEDYAFFCS 112 (128)
T ss_dssp EEESSCCCTTCCEEEECC
T ss_pred EEeccccCCCceEEEEEC
Confidence 999 7 8995 999993
No 102
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=98.01 E-value=2.2e-05 Score=46.18 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=42.5
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHA 73 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~ 73 (75)
+..|+++.|++|++.++|. + .. |++..+. .|.. ..+.||+..++.|. +++|+|.|.|
T Consensus 59 P~~l~Vp~G~~V~~~vts~-D-V~-----Hsf~ip~----~~~k----~d~~PG~~~~~~~~~~~~G~y~~~C 116 (135)
T 2cua_A 59 PNPIEVPQGAEIVFKITSP-D-VI-----HGFHVEG----TNIN----VEVLPGEVSTVRYTFKRPGEYRIIC 116 (135)
T ss_dssp SSSEEEETTSEEEEEEEBS-S-SC-----EEEEETT----SSCE----EEECBTBCEEEEEECCSCEEEEEEC
T ss_pred CCEEEEcCCCEEEEEEEeC-C-cc-----ceEEecC----CCce----eEeCCCCcEEEEEEcCCCEEEEEEC
Confidence 3578999999999999997 3 34 4443331 1211 23679999999999 9999999999
No 103
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=97.99 E-value=6e-05 Score=44.05 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=42.4
Q ss_pred cccEEEec-CCEEEEEEEeCCCCCC-----ceEEeC-----------Cccc----cCCCCCCCCCcccccccCCCCEEEE
Q psy88 2 LYPKNVCE-GDRVVVDVRNSMDGLE-----NTIHWH-----------GIHQ----RGTQYSDGVPFVTQCPITQGNTFRY 60 (75)
Q Consensus 2 ~~~i~~~~-Gd~v~i~~~N~~~~~~-----~~iH~H-----------G~~~----~~~~~~DG~~~~~~~~i~pG~~~~y 60 (75)
+-.|.|++ |++|+|+|+|... .+ |.+=+= |+.. .-.+..|.........|.||++.+.
T Consensus 17 p~~i~V~~~Ge~V~~~l~N~G~-~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~v 95 (125)
T 3fsa_A 17 TNAITVDKSCKQFTVNLSHPGN-LPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSV 95 (125)
T ss_dssp CSEEEECTTCSEEEEEEECCSS-CCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEE
T ss_pred cCEEEEecCCCEEEEEEEECCc-ccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEE
Confidence 35689976 9999999999985 43 332210 0000 0000011111112334799999999
Q ss_pred EEc-C---CCeeeEEccC
Q psy88 61 QFT-A---NAGTHFWHAH 74 (75)
Q Consensus 61 ~~~-~---~~Gt~~YH~H 74 (75)
.|. . .+|+|.|.|-
T Consensus 96 tf~~~~l~~~G~y~f~C~ 113 (125)
T 3fsa_A 96 TFDVSKLKEGEQYMFFCA 113 (125)
T ss_dssp EEEGGGC---CCEEEECS
T ss_pred EEeCcCcCCCccEEEEcC
Confidence 999 6 8999999993
No 104
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=97.73 E-value=0.00013 Score=44.53 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=43.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
+..|+++.|++|++.++|. + .. |++..+.. |. ..-+.||+..+..|. +++|+|++.|.
T Consensus 92 Pn~l~VP~G~~Vr~~vTS~-D-Vi-----Hsf~IP~l----gi----k~da~PG~~n~~~~~~~kpG~y~g~Cs 150 (168)
T 3s8f_B 92 PNPIEVPQGAEIVFKITSP-D-VI-----HGFHVEGT----NI----NVEVLPGEVSTVRYTFKRPGEYRIICN 150 (168)
T ss_dssp SSSEEEETTSEEEEEEECS-S-SC-----EEEEETTS----SC----EEEECTTBCEEEEEECCSCEEEEEECC
T ss_pred cCEEEEeCCCeEEEEEecC-C-ce-----EEEEECCC----Ce----EEEecCCceeEEEEEeCCCEEEEEECC
Confidence 3578999999999999997 4 34 44433321 11 112679999999999 99999999994
No 105
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=93.99 E-value=0.21 Score=31.19 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=41.9
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
..|++..|+.|++.+++.. .- ||+..+.. |+ +.-+-||..-...|. +++|+|+..|-
T Consensus 41 n~l~lP~g~~V~~~lTS~D--Vi-----HSF~IP~l----gv----K~daiPGr~n~l~~~~~~pG~y~g~Cs 98 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNS--VM-----HSFFIPRL----GS----QIYAMAGMQTRLHLIANEPGTYDGICA 98 (205)
T ss_dssp SEEEEETTSCEEEEEEESS--SC-----EEEEEGGG----TE----EEEECTTCCEEEEECCSSSEEEEEEEC
T ss_pred ceEEEeCCCEEEEEEecCC--ce-----eeEEeccc----Cc----EEEecCCceEEEEEEeCCCeEEEEEcc
Confidence 3588999999999999873 22 55544421 11 223668999999999 99999999883
No 106
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=93.00 E-value=0.4 Score=26.77 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=37.4
Q ss_pred cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88 4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~ 63 (75)
.|++++| +++++.+.|..+ +|..+=.|=.++..++ ..| | .|.-+...+.||++++.++.
T Consensus 12 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~LV 82 (101)
T 4ep8_B 12 QIALNTGRATCRVVVENHGD-RPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELV 82 (101)
T ss_dssp EEECSTTCCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEEEE
T ss_pred cEEEcCCCCEEEEEEEeCCC-cceEEccccChhHcCcceeecHhhccCceecccCCCeEeeCCCCeEEEEEE
Confidence 5677777 789999999999 8876633333322211 111 1 12223455889999999887
No 107
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=92.22 E-value=0.58 Score=30.06 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=41.2
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
..|++..|+.|++.+++.. .- ||...+.. |+ ..-+-||+.-...|. +++|+|...|-
T Consensus 171 n~l~lP~g~~v~~~~tS~D--Vi-----Hsf~ip~l----~~----k~da~PG~~n~~~~~~~~~G~y~g~Cs 228 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGAD--VI-----HSWTVPAF----GV----KQDAVPGRLAQLWFRAEREGIFFGQCS 228 (262)
T ss_dssp SCEEEETTSEEEEEEEESS--SC-----EEEEEGGG----TE----EEEECBTCCEEEEEECCSCEEEEECCC
T ss_pred ceEEEecCCEEEEEEEECc--cc-----ceeeeccc----Cc----eEEecCCceeEEEEecCCcEEEEEECh
Confidence 3689999999999999874 23 45444321 11 112568998888999 99999999884
No 108
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=91.94 E-value=0.38 Score=27.90 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=37.5
Q ss_pred cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88 4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~ 63 (75)
.|++++| ++++|.+.|..+ +|..+=.|=.++..++ ..| | .|.-+...+.||++++.++.
T Consensus 18 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 88 (126)
T 4ac7_B 18 EIEINAGREKTTIRVSNTGD-RPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELT 88 (126)
T ss_dssp EEETTTTSCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred CEEeCCCCcEEEEEEEeCCC-CCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEE
Confidence 5777777 689999999999 8877633332222211 111 1 12223455889999999887
No 109
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=91.94 E-value=0.38 Score=27.90 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=37.5
Q ss_pred cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88 4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~ 63 (75)
.|++++| ++++|.+.|..+ +|..+=.|=.++..++ ..| | .|.-+...+.||++++.++.
T Consensus 18 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 88 (126)
T 4ubp_B 18 EIEINAGREKTTIRVSNTGD-RPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELT 88 (126)
T ss_dssp EEETTTTSCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred CEEeCCCCcEEEEEEEeCCC-CCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEE
Confidence 5777777 689999999999 8877633332222211 111 1 12223455889999999887
No 110
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=91.27 E-value=0.94 Score=29.73 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=41.1
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
..|.+..|+.|++.+++.. .- |+...+.. |. ..-+-||..-...|. +++|+|...|-
T Consensus 189 N~lvlP~g~~V~~~ltS~D--Vi-----Hsf~iP~l----g~----k~daiPG~~n~~~~~~~~~G~y~g~Cs 246 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTATD--VI-----HAWTIPAF----AV----KQDAVPGRIAQLWFSVDQEGVYFGQCS 246 (298)
T ss_dssp SCEEEESSSEEEEEEEESS--SC-----EEEEEGGG----TE----EEEECTTCCEEEEEECSSSEEEEECCC
T ss_pred ceEEEEcCCEEEEEEEeCC--cc-----ceeeEccc----Cc----eEEecCCceEEEEEEeCCCEEEEEEcc
Confidence 4689999999999999964 23 44444321 11 122568998888999 99999999884
No 111
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=88.95 E-value=1.8 Score=27.20 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=40.1
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
..+.+..|+.|++.++... .- |+...+.. | + ..-.-||+.-...|. +++|+|...|-
T Consensus 140 n~lvlP~~~~Vr~~vtS~D--Vi-----Hsf~vP~l----g---~-K~DaiPGr~n~~~~~~~~~G~y~g~Cs 197 (227)
T 1v54_B 140 NRVVLPMEMTIRMLVSSED--VL-----HSWAVPSL----G---L-KTDAIPGRLNQTTLMSSRPGLYYGQCS 197 (227)
T ss_dssp SCEEEETTSCEEEEEEESS--SC-----EEEEEGGG----T---E-EEEECTTCCEEEEECCSSCEEEEECCC
T ss_pred ceEEEecCCEEEEEEEeCc--cc-----ceeeeccc----C---c-EEEecCCceEEEEEecCCcEEEEEEeh
Confidence 4688899999999999863 33 44433321 1 1 112567888888999 99999999884
No 112
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=88.39 E-value=2.3 Score=24.29 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=37.5
Q ss_pred cCCE--EEEEEEeCCCCCCceEEeCC-cccc--C--------CCCCCCCCc---ccccccCCCCEEEEEEc-C---CCee
Q psy88 9 EGDR--VVVDVRNSMDGLENTIHWHG-IHQR--G--------TQYSDGVPF---VTQCPITQGNTFRYQFT-A---NAGT 68 (75)
Q Consensus 9 ~Gd~--v~i~~~N~~~~~~~~iH~HG-~~~~--~--------~~~~DG~~~---~~~~~i~pG~~~~y~~~-~---~~Gt 68 (75)
.|+. +.++++|..+ .+..+.+.- ..+. . -.|+||-.. .....++||++.+|... + .||+
T Consensus 16 ~g~~v~~~ltv~N~s~-~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~ 94 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSE-RAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGT 94 (120)
T ss_dssp CSSCEEEEEEEEECSS-SCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEE
T ss_pred CCCeEEEEEEEEcCCC-CcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCcc
Confidence 4554 4556679887 676665433 2211 0 013454322 23455899999999988 4 5898
Q ss_pred eEEc
Q psy88 69 HFWH 72 (75)
Q Consensus 69 ~~YH 72 (75)
|...
T Consensus 95 Ytl~ 98 (120)
T 3isy_A 95 YEVK 98 (120)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8654
No 113
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=88.00 E-value=1.8 Score=29.73 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=12.6
Q ss_pred cccCCCCEEEEEEc
Q psy88 50 CPITQGNTFRYQFT 63 (75)
Q Consensus 50 ~~i~pG~~~~y~~~ 63 (75)
.||+|||+++.+..
T Consensus 352 ~pI~PGETrt~~V~ 365 (419)
T 3rfr_A 352 DVIAPGESKEIVVK 365 (419)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CCcCCCcceEEEEE
Confidence 39999999999887
No 114
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Probab=86.70 E-value=1.2 Score=28.23 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=37.4
Q ss_pred cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88 4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~ 63 (75)
.|++++| +++++.+.|..+ +|..+=.|=.++..++ ..| | .|.-+...+.||++++.++.
T Consensus 117 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T 3qga_A 117 DIELNAGKEITELKVTNKGP-KSLHVGSHFHFFEANRALEFDREKAYGKRLDIPSGNTLRIGAGETKTVHLI 187 (225)
T ss_dssp CEETTTTCCCEEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred ceecCCCCceEEEEEEECCC-CceeeccccchhhcCchhhccHHHhCCcccccCCCCeEeeCCCCeeEEEEE
Confidence 4777777 689999999999 8877633332322211 111 1 12223455889999999887
No 115
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=85.82 E-value=2 Score=29.15 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.7
Q ss_pred cccccCCCCEEEEEEc
Q psy88 48 TQCPITQGNTFRYQFT 63 (75)
Q Consensus 48 ~~~~i~pG~~~~y~~~ 63 (75)
...||+|||+++.+..
T Consensus 318 d~~pI~PGETr~~~v~ 333 (382)
T 1yew_A 318 DNSPLAPGETRTVDVT 333 (382)
T ss_dssp CCSCBCTTCEEEEEEE
T ss_pred CCCCcCCCceeEEEEE
Confidence 3668999999999876
No 116
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=85.48 E-value=3.1 Score=23.59 Aligned_cols=57 Identities=16% Similarity=0.356 Sum_probs=32.8
Q ss_pred EEEecCCEEEEEEE---eCCCCCCc--eEE--eCCccccC-CCCCCCCCcccccccCCCCEEEEEEc
Q psy88 5 KNVCEGDRVVVDVR---NSMDGLEN--TIH--WHGIHQRG-TQYSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 5 i~~~~Gd~v~i~~~---N~~~~~~~--~iH--~HG~~~~~-~~~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
=.+++|+.+.|.+. |... ... .++ .-|+..+- ....|+=.+ ..||+.+|+.++|.+.
T Consensus 27 C~l~rG~~~~i~~~f~~~~~~-~~l~~~v~~~~~g~~ip~p~~~~daC~~-~~CPl~~G~~~~y~~~ 91 (129)
T 1xwv_A 27 CIIHRGKPFTLEALFDANQNT-KTAKIEIKASLDGLEIDVPGIDTNACHF-MKCPLVKGQQYDAKYT 91 (129)
T ss_dssp EEEETTSEEEEEEEEECCSCB-SCCEEEEEEEETTEEECCCSCCCBGGGT-SCSSBCTTCEEEEEEE
T ss_pred CEEeCCCeEEEEEEEECCCcc-ceEEEEEEEEEcCEEeecCCCCCCccCC-ccCcccCCEEEEEEEE
Confidence 36788998888877 2211 222 222 23443331 112343222 5899999999999965
No 117
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=82.88 E-value=3.7 Score=23.29 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=33.2
Q ss_pred EEEecCCEEEEEEE---eCCCCCCceEEeC----Ccccc-CCCCCCCCCcccccccCCCCEEEEEEc
Q psy88 5 KNVCEGDRVVVDVR---NSMDGLENTIHWH----GIHQR-GTQYSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 5 i~~~~Gd~v~i~~~---N~~~~~~~~iH~H----G~~~~-~~~~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
=.+++|..+.|.+. |... .......+ |+..+ ..+..|+=.....||+.+|+.++|...
T Consensus 28 C~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~ 93 (130)
T 1nep_A 28 CKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNK 93 (130)
T ss_dssp EEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEE
T ss_pred CEEEcCCeEEEEEEEEccccc-ceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEE
Confidence 35788998888877 2222 22222333 33332 112234422224899999999999866
No 118
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=82.51 E-value=0.52 Score=27.52 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.0
Q ss_pred cEEEecCCEEEEEEEeCC
Q psy88 4 PKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~ 21 (75)
-|.++.|++|++.+.|+.
T Consensus 72 ~InV~~GETVrF~v~nkt 89 (131)
T 2wtp_A 72 YVNVDSGETVAFRAGEKI 89 (131)
T ss_dssp EEEEETTCEEEEEETTEE
T ss_pred EEEecCCCEEEEEeCCcE
Confidence 489999999999999974
No 119
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=79.30 E-value=1.6 Score=24.81 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.4
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
.+|.+++||+|.|++..
T Consensus 93 ~~L~L~~GD~V~v~~~~ 109 (131)
T 2wnv_C 93 VLLRLQVGEEVWLAVND 109 (131)
T ss_dssp EEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCEEEEEEeC
Confidence 36899999999999863
No 120
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=79.21 E-value=2.5 Score=26.93 Aligned_cols=59 Identities=22% Similarity=0.151 Sum_probs=36.8
Q ss_pred cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88 4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~ 63 (75)
.|.+++| +++++.+.|..+ +|..+=.|=.++..++ ..| | .|.-+...+.||++++.++.
T Consensus 117 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTAVRFEPG~~r~V~LV 187 (238)
T 1e9y_A 117 DITINEGKKAVSVKVKNVGD-RPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIAAGTAVRFEPGEEKSVELI 187 (238)
T ss_dssp EEETTTTCCCCEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSSTTCEEEECTTCEEEEEEE
T ss_pred CeeeCCCCCeEEEEEEeCCC-CceEeccccchHhcCccccccHHHhCCcccCcCCCCeEeeCCCCeeEEEEE
Confidence 4666777 488999999999 8877633333322211 111 1 22223455889999999887
No 121
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=79.11 E-value=1.8 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.6
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
.+|.+++||+|.|++..
T Consensus 94 ~~L~L~~GD~V~l~~~~ 110 (134)
T 2wnv_A 94 MVLQLQQGDQVWVEKDP 110 (134)
T ss_dssp EEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCEEEEEEeC
Confidence 36899999999999864
No 122
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=77.91 E-value=1.9 Score=24.73 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=14.5
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
.+|.+++||+|.|++..
T Consensus 95 ~~L~L~~GD~V~v~~~~ 111 (136)
T 2wnv_B 95 MVLKLEQGENVFLQATD 111 (136)
T ss_dssp EEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCEEEEEEeC
Confidence 36899999999999864
No 123
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=77.35 E-value=4.7 Score=23.16 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=25.9
Q ss_pred EEEEEeCCCCCCc---eEEeCCccccCCC---CCCCCCcccccccCCCCEEEEEEc
Q psy88 14 VVDVRNSMDGLEN---TIHWHGIHQRGTQ---YSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 14 ~i~~~N~~~~~~~---~iH~HG~~~~~~~---~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
+|++.|..+ .+. +=||.=.+..... .-+|+-+. |-.+.||++|.|.=-
T Consensus 34 ~I~I~N~~~-~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~-qP~L~PGe~f~YtSg 87 (127)
T 2f1e_A 34 SIRIQNAGA-VPARLVARHWQITDGNGRTEQVDGEGVVGE-QPWLRPGEAFHYTSG 87 (127)
T ss_dssp EEEEEECSS-SCEEEEEEEEEEEETTSCEEEEEESSBTTB-CCEECTTCEEEEEEE
T ss_pred EEEEEeCCC-CCEEEEeceEEEEeCCCCEEEEECCCeecC-CCcCCCCCceEEeCC
Confidence 577788876 443 3366433221100 12443332 445789999999843
No 124
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=76.74 E-value=2.9 Score=27.62 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=38.9
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 74 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H 74 (75)
..|++..|..|++.++... .- |++..+.. | + +.-+-||..-...|. +++|+|...|-
T Consensus 151 n~l~lP~g~~V~~~lTS~D--Vi-----Hsf~IP~l----g---~-k~DaiPGr~n~~~~~~~~~G~y~g~Cs 208 (315)
T 1fft_B 151 NEIAFPANTPVYFKVTSNS--VM-----NSFFIPRL----G---S-QIYAMAGMQTRLHLIANEPGTYDGISA 208 (315)
T ss_dssp SBCCCCSSSEEEEEECBSS--SC-----EEEEEGGG----T---E-EEEECBTSCEEEEEECCSCBCCEEBCC
T ss_pred ceEEEeCCCEEEEEEEeCC--cc-----ceeeeccc----C---c-EEeecCCcceeeEEecCCCeEEEEecc
Confidence 3567788999999888763 22 44444321 1 1 122568998888899 99999998883
No 125
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=74.58 E-value=4.8 Score=23.13 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCCc---eEEeCCccccCC-C--CCCCCCcccccccCCCCEEEEEEc
Q psy88 14 VVDVRNSMDGLEN---TIHWHGIHQRGT-Q--YSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 14 ~i~~~N~~~~~~~---~iH~HG~~~~~~-~--~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
+|++.|..+ .+. +=||.=.+.... . .-+|+-+ .|-.+.||++|.|.=-
T Consensus 33 ~I~I~N~~~-~~vQL~sRhW~Itd~~g~~~eV~G~GVVG-~qP~L~PGe~f~YtSg 86 (126)
T 1xvs_A 33 LITIKNLSS-QTVQLMSRRWLITDADGKQTVVEGDGVVG-EQPRIKANDEYTYSSG 86 (126)
T ss_dssp EEEEEECSS-SCEEEEEEEEEEEETTCCEEEEEEESBTT-BCCEECTTCEEEEEEE
T ss_pred EEEEEECCC-CCEEEEecEEEEEeCCCCEEEEECCceEc-CCCcCCCCCceEEeCC
Confidence 577888876 443 336643221110 0 0133332 2445789999999843
No 126
>4ajy_V VON hippel-lindau disease tumor suppressor; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 3zrc_C 3zrf_C* 3ztc_C* 3zun_C 4awj_C* 1lqb_C 3ztd_C* 4b95_C* 1lm8_V 1vcb_C 4b9k_C*
Probab=74.44 E-value=6.5 Score=23.66 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=31.0
Q ss_pred ecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEE
Q psy88 8 CEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61 (75)
Q Consensus 8 ~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~ 61 (75)
+.+..+.|+|.|..+ .+.-+-|=. + +|.+ ....-+.||+++...
T Consensus 17 ~S~~~~~V~FvN~s~-~~V~v~WID--y------~G~~-~~Y~tL~PG~~~~~~ 60 (163)
T 4ajy_V 17 NSREPSQVIFCNRSP-RVVLPVWLN--F------DGEP-QPYPTLPPGTGRRIH 60 (163)
T ss_dssp CCCCEEEEEEEECSS-SCEEEEEEC--T------TSCE-EECCCBCTTEEEEEE
T ss_pred CCCceEEEEEEeCCC-CeEEEEEEC--C------CCCE-EEeeeeCCCCeEEec
Confidence 467899999999998 888888832 2 4432 122348899988764
No 127
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=72.84 E-value=6 Score=23.13 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=25.4
Q ss_pred EEEEEeCCCCCCc---eEEeCCccccCC-C--CCCCCCcccccccCCCCEEEEEEc
Q psy88 14 VVDVRNSMDGLEN---TIHWHGIHQRGT-Q--YSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 14 ~i~~~N~~~~~~~---~iH~HG~~~~~~-~--~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
+|++.|..+ .+. +=||-=.+.... . .-+|+-+ .|-.|.||++|.|.=-
T Consensus 38 ~ItI~N~~~-~~vQL~sRhW~ItD~~G~~~eV~G~GVVG-eqPvL~PGe~F~YtSg 91 (139)
T 1xq4_A 38 TVRITNTGS-HPAQVISRHWIITDGEERVQEVRGLGVVG-QQPLLAPGETFEYTSG 91 (139)
T ss_dssp EEEEEECSS-SCEEEEEEEEEEECTTSCEEEEEEESSSS-CCCEECTTCEEEEEEE
T ss_pred EEEEEeCCC-CCEEEEecEEEEEeCCCCEEEEECCCeec-CCCcCCCCCceEEcCC
Confidence 577788876 443 336643221110 0 0133332 2445789999999843
No 128
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=72.30 E-value=7.5 Score=21.30 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=28.7
Q ss_pred EEEEEEEeCCCCCC---ceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc---CCCe
Q psy88 12 RVVVDVRNSMDGLE---NTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT---ANAG 67 (75)
Q Consensus 12 ~v~i~~~N~~~~~~---~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~---~~~G 67 (75)
.++|.|+|-++ .+ ..++.-|.... .+ --.....|.||++.++++. ..+|
T Consensus 23 ~v~vsf~NPL~-~~L~~c~~~vEG~GL~-----~~-~~~~~~~v~pg~~~~~~~~~~P~~~G 77 (102)
T 2xzz_A 23 EVQIVFKNPLP-VTLTNVVFRLEGSGLQ-----RP-KILNVGDIGGNETVTLRQSFVPVRPG 77 (102)
T ss_dssp EEEEEEECCSS-SCBCSEEEEEEETTTE-----EE-EEEEECCBCTTCEEEEEEEECCCSCS
T ss_pred EEEEEEECCCC-CcccCEEEEEECCCCC-----cc-eEEEcCcCCCCCEEEEEEEEecCccc
Confidence 56788899998 43 23444443221 11 0011234899999999887 4555
No 129
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=71.11 E-value=10 Score=22.67 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=31.4
Q ss_pred ecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEE
Q psy88 8 CEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61 (75)
Q Consensus 8 ~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~ 61 (75)
+.+....|+|.|..+ ++.-+-| +.+ +|.+. ....+.||+.++..
T Consensus 14 ~s~~~~~V~FvN~s~-~~V~v~W--IDy------~G~~v-~Y~~L~PG~~~~q~ 57 (160)
T 1lm8_V 14 NSREPSQVIFCNRSP-RVVLPVW--LNF------DGEPQ-PYPTLPPGTGRRIH 57 (160)
T ss_dssp CCCCEEEEEEEECSS-SCEEEEE--ECT------TSCEE-ECCCBCTTEEEEEE
T ss_pred CCCceEEEEEEeCCC-CeEEEEE--ECC------CCCEE-EeeeeCCCCEEeCC
Confidence 456889999999998 8889988 333 44332 23348999988764
No 130
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=70.39 E-value=12 Score=20.89 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=16.9
Q ss_pred ccEEEecCCEEEEEEEeCCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~ 22 (75)
.+|.++.||++.|.|.-+-.
T Consensus 15 ~~i~~~~Ge~~~I~L~~NPt 34 (116)
T 2c34_A 15 KWVDTHVGKTTEIHLKGNPT 34 (116)
T ss_dssp CCEEECSSCCEEEEEECCTT
T ss_pred cEEEEcCCCEEEEEeCCCCC
Confidence 47999999999999996543
No 131
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=70.12 E-value=5.3 Score=23.21 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCCCc---eEEeCCccccCC-C--CCCCCCcccccccCCCCEEEEEEc
Q psy88 13 VVVDVRNSMDGLEN---TIHWHGIHQRGT-Q--YSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 13 v~i~~~N~~~~~~~---~iH~HG~~~~~~-~--~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
-+|++.|..+ .+. +=||-=.+.... . .-+|+-+ .|-.|.||++|.|.=-
T Consensus 32 Y~ItI~N~~~-~~vQL~sRhW~Itd~~g~~~eV~G~GVVG-eqP~L~PGe~F~YtSg 86 (134)
T 1tza_A 32 YTITIINLGE-QAAKLETRHWIITDANGKTSEVQGAGVVG-ETPTIPPNTAYQYTSG 86 (134)
T ss_dssp EEEEEEECSS-SCEEEEEEEEEEEETTSCEEEEEEESBTT-BCCEECTTEEEEEEEE
T ss_pred EEEEEEeCCC-CCEEEEecEEEEEeCCCCEEEEEcCceEc-CCCcCCCCCceEEcCC
Confidence 3577888876 443 336643221110 0 0133332 2445789999999843
No 132
>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*
Probab=69.45 E-value=6.2 Score=29.24 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=36.4
Q ss_pred cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88 4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~ 63 (75)
.|.+++| +++++.++|..+ +|..+=.|=.++..++ ..| | .|.-+...++||++++..+.
T Consensus 143 ~~~~~~~~~~~~~~v~~~~~-r~~~v~sh~hf~e~n~~l~fdr~~~~g~rl~~~~g~~~rf~pg~~~~v~l~ 213 (840)
T 4gy7_A 143 CLTLNIGRKAVILKVTSKGD-RPIQVGSHYHFIEVNPYLTFDRRKAYGMRLNIAAGTAVRFEPGDCKSVTLV 213 (840)
T ss_dssp EEECSCSCEEEEEEEEECCS-SCEEEETTSCGGGSCTTEEBCHHHHTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred ceEecCCCceEEEEEEeCCC-CceEeccccchhhcCcccccchhhhccccccccCCCceeeCCCCeeEEEEE
Confidence 3555555 468899999999 8877644433333221 111 1 22223455899999999886
No 133
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=69.01 E-value=2.6 Score=24.93 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.5
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
.+|.+++||+|.|++..
T Consensus 120 ~vL~L~~GD~Vwv~~~~ 136 (160)
T 1gr3_A 120 AIIDLTENDQVWLQLPN 136 (160)
T ss_dssp EEEEECTTCEEEEECCC
T ss_pred EEEEECCCCEEEEEEec
Confidence 36899999999999864
No 134
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=68.38 E-value=2.9 Score=23.06 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.7
Q ss_pred ccEEEecCCEEEEEEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~ 20 (75)
+.+++++|+++.|++...
T Consensus 30 Y~~~a~aGQ~l~v~l~s~ 47 (111)
T 4g9s_B 30 YTFYAKKGQKVHVSISNE 47 (111)
T ss_dssp EEEEECTTCEEEEEESCT
T ss_pred EEEEecCCCEEEEEEecC
Confidence 578999999999999764
No 135
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=66.98 E-value=3 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.3
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
.+|.+++||+|.|++..
T Consensus 138 ~vL~L~~GD~Vwl~l~~ 154 (178)
T 1o91_A 138 AVLLLRPGDQVFLQMPS 154 (178)
T ss_dssp EEEEECTTCEEEEECCC
T ss_pred EEEEECCCCEEEEEEec
Confidence 36899999999998754
No 136
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=65.84 E-value=14 Score=23.64 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=30.9
Q ss_pred ccEEEecCCEEEEEEEeCCCC-----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEE
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG-----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRY 60 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~-----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y 60 (75)
.+|+.+-|-++.|.|.|..+. .+.++..-|...... .-++..+.||++.|.
T Consensus 129 EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~-------aG~~i~L~PGESiTl 184 (246)
T 3kmh_A 129 EDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHT-------AGSQLRLSPGESICL 184 (246)
T ss_dssp EEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEEC-------TTCEEEECTTCEEEE
T ss_pred ccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeC-------CCCEEEECCCCeEec
Confidence 468888888999999998642 244444444332211 112334788888875
No 137
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=64.39 E-value=6 Score=21.91 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=15.9
Q ss_pred ccEEEecCCEEEEEEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~ 20 (75)
.+|.++.||++.|.|.-+
T Consensus 16 ~~I~v~~Ge~~~I~L~~N 33 (111)
T 3m86_A 16 ATLHISFNDLIKIQLRTN 33 (111)
T ss_dssp CEEEECTTCEEEEEEEEC
T ss_pred cEEEEcCCCEEEEEECCC
Confidence 479999999999999854
No 138
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=63.50 E-value=1.4 Score=26.13 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.5
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
.+|.+++||+|.|++.+
T Consensus 119 ~vL~L~~GD~Vwl~l~~ 135 (162)
T 2ka3_A 119 LILPLQAGDTVCVDLVM 135 (162)
T ss_dssp SCCCCCTTCEEEEECCS
T ss_pred EEEEeCCCCEEEEEEcC
Confidence 47899999999999864
No 139
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=62.54 E-value=4.2 Score=23.40 Aligned_cols=16 Identities=25% Similarity=0.110 Sum_probs=13.4
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
+|.+++||+|.|++..
T Consensus 95 il~L~~GD~V~v~~~~ 110 (148)
T 4f3j_A 95 MVRLEPEDQVWVQVGV 110 (148)
T ss_dssp EEEECTTCEEEEECCS
T ss_pred EEEcCCCCEEEEEEEc
Confidence 5789999999998653
No 140
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=58.60 E-value=7.9 Score=22.24 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=15.7
Q ss_pred ccEEEecCCEEEEEEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~ 20 (75)
.+|+++.||++.|.|.-+
T Consensus 35 ~tI~v~~Ge~~~I~L~~N 52 (132)
T 2wgn_B 35 SPLKLTQGQELVLTLPSN 52 (132)
T ss_dssp SCEEECTTCEEEEEECCC
T ss_pred cEEEEcCCCEEEEEeCCC
Confidence 479999999999999854
No 141
>1tnr_A Tumor necrosis factor beta; complex(lymphokine/receptor); 2.85A {Homo sapiens} SCOP: b.22.1.1
Probab=58.11 E-value=8.5 Score=22.11 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=13.8
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
.+++++||+|.|++.|
T Consensus 111 vf~L~~GD~l~v~v~~ 126 (144)
T 1tnr_A 111 AFQLTQGDQLSTHTDG 126 (144)
T ss_dssp EEEECTTCEEEEEEEC
T ss_pred EEEeCCCCEEEEEeCC
Confidence 4689999999999875
No 142
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=57.38 E-value=23 Score=19.80 Aligned_cols=18 Identities=6% Similarity=0.263 Sum_probs=15.6
Q ss_pred ccEEEecCCEEEEEEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~ 20 (75)
.+|.++.||++.|.|.-+
T Consensus 13 ~ti~l~~Ge~~~I~L~~N 30 (121)
T 2cio_B 13 KTIRMVIGETFTIELESN 30 (121)
T ss_pred cEEEEcCCCEEEEEeCCC
Confidence 479999999999999844
No 143
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=56.92 E-value=15 Score=20.91 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=31.0
Q ss_pred EEecCCEE--EEEEEeCCCCCCceEEeCCccccCCCCCCCCCcc-cccccCCCCEEEEEEc---CCCeeeE
Q psy88 6 NVCEGDRV--VVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV-TQCPITQGNTFRYQFT---ANAGTHF 70 (75)
Q Consensus 6 ~~~~Gd~v--~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~-~~~~i~pG~~~~y~~~---~~~Gt~~ 70 (75)
.++.|+.+ .++++|... .+.. +.... ...||.... ....+++|++.++.|. ..+|+|-
T Consensus 28 ~v~~G~~~ti~vtV~N~G~-~~a~----~~~V~--lyvng~~v~t~~v~La~G~s~tv~f~~~~~~~G~~~ 91 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGG-IGVP----STKVR--VYINGTLYKNWTVSLGPKEEKVLTFNWTPTQEGMYR 91 (127)
T ss_dssp EECTTCCEEEEEEEEECSS-SCEE----EEEEE--EEETTEEEEEEEEEECTTCEEEEEEEECCSSCEEEE
T ss_pred cccCCCEEEEEEEEEECCC-CccC----CcEEE--EEECCEEEeeEEeccCCCCeEEEEEEEEcCCCcEEE
Confidence 45667655 556679876 3311 11111 112443211 1335899999777776 5678763
No 144
>1rj8_A Ectodysplasin-A isoform EDA-A2; TNF domain, jelly roll, splice variant, trimer, hormone-GROW complex; 2.23A {Homo sapiens} SCOP: b.22.1.1 PDB: 1rj7_A
Probab=54.28 E-value=7.5 Score=23.01 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=14.3
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
.+++++||+|.|++.+.
T Consensus 124 V~~L~~GD~l~v~v~~~ 140 (164)
T 1rj8_A 124 VCLLKARQKIAVKMVHA 140 (164)
T ss_dssp EEEECTTCEEEEEECSC
T ss_pred EEEeCCCCEEEEEecCC
Confidence 47899999999998554
No 145
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=53.82 E-value=27 Score=19.55 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=32.5
Q ss_pred ccEEEecCCEEEEE--EEeCCCCCCceEEeCCccccCCCCCCCCCcc--cccccCCCCEEEEEEc
Q psy88 3 YPKNVCEGDRVVVD--VRNSMDGLENTIHWHGIHQRGTQYSDGVPFV--TQCPITQGNTFRYQFT 63 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~--~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~--~~~~i~pG~~~~y~~~ 63 (75)
+|.-+.+||.+.|. +.|.++ ....+...= ..+...++.+.. +.| |.++++.+|.|.
T Consensus 14 lPysv~rgE~~~~~~~V~nyl~-~~~~v~v~L---~~s~~~~~~~~~~~t~C-lc~~~~~t~~W~ 73 (118)
T 3es6_B 14 IPKSVRPNDEVTAVLAVQTELK-ECMVVKTYL---ISSIPLQGAFNYKYTAC-LCDDNPKTFYWD 73 (118)
T ss_dssp CCSEECSSCCEEEEEEEEECCS-SCEEEEEEE---EESSCCCSGGGCEEEEE-ECSSSCEEEEEE
T ss_pred CCceEecCCEEEEEEEEEeccc-ceEEEEEEe---cCCcCEEccCCCcccEE-ecCCCceEEEEE
Confidence 45568889977654 569987 554443211 111223433321 223 788999999887
No 146
>3ugn_A Tumor necrosis factor ligand superfamily member 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAG; 2.59A {Homo sapiens} PDB: 4en0_A*
Probab=52.47 E-value=11 Score=22.48 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.4
Q ss_pred cEEEecCCEEEEEEEeCC
Q psy88 4 PKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~ 21 (75)
.+.+++||+|.|.+.+..
T Consensus 133 vf~L~~GD~L~V~Vs~~~ 150 (167)
T 3ugn_A 133 VVHLEAGEEVVVRVLDER 150 (167)
T ss_dssp EEEECTTCEEEEEEESCC
T ss_pred eEEeCCCCEEEEEeCChh
Confidence 468999999999998864
No 147
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=51.50 E-value=4.2 Score=22.90 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=12.4
Q ss_pred CcccEEEecCCEEEEE
Q psy88 1 MLYPKNVCEGDRVVVD 16 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~ 16 (75)
|...+.++.||+|.|-
T Consensus 1 ~~~k~~IkkGD~V~Vi 16 (110)
T 3v2d_Y 1 MRVKMHVKKGDTVLVA 16 (110)
T ss_dssp CCCCCSCCTTSEEEEC
T ss_pred CCcccccCCCCEEEEe
Confidence 5667788899998774
No 148
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=51.49 E-value=32 Score=19.62 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.4
Q ss_pred ccEEEecCCEEEEEEEeCC
Q psy88 3 YPKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~ 21 (75)
.+|+++.||++.|.|.-+-
T Consensus 33 ~~I~v~~Ge~~~I~L~~NP 51 (131)
T 2h7w_A 33 ATLTVAVGELVEIQLPSNP 51 (131)
T ss_dssp CEEEECTTCEEEEEEEECG
T ss_pred CEEEEeCCCEEEEEeCCCC
Confidence 4799999999999999653
No 149
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.94 E-value=11 Score=20.13 Aligned_cols=53 Identities=8% Similarity=-0.032 Sum_probs=30.4
Q ss_pred EEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc--ccccccCCCCEEEEEEc---CCCeee
Q psy88 12 RVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--VTQCPITQGNTFRYQFT---ANAGTH 69 (75)
Q Consensus 12 ~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~--~~~~~i~pG~~~~y~~~---~~~Gt~ 69 (75)
+..+.|.|..+ .+..+.+. ..... ..+.-. -..-+|+||++....+. +..|.|
T Consensus 29 ~~~~~l~N~g~-~p~~~~~~--~~~~~--~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~~g~f 86 (112)
T 2e6j_A 29 CYEAILYNKGS-IDALFNMT--PPTSA--LGACFVFSPKEGIIEPSGVQAIQISFSSIILGNF 86 (112)
T ss_dssp EEEEEEEECCS-SCEEEEEC--CCSSH--HHHHCEEESSEEEECTTBCCEEEEEECCCCCEEE
T ss_pred EEEEEEEECCc-ceEEEEEe--cCCcc--ccCcEEEECCcCEECCCCEEEEEEEEECCCcceE
Confidence 34689999988 77777762 10000 000000 01335899998888877 556754
No 150
>1zru_A Lactophage P2 receptor binding protein; domains: beta barrel, beta prism, beta barrel, structural structural proteomics in europe; 1.73A {Lactococcus lactis phage P2} SCOP: b.21.1.3 b.108.1.4 b.163.1.2 PDB: 2bsd_A 2bse_A 2x53_A 2x54_A 2x5a_A 2wzp_A
Probab=48.90 E-value=49 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=13.5
Q ss_pred EEEec--CCEEEEEEEeCCC
Q psy88 5 KNVCE--GDRVVVDVRNSMD 22 (75)
Q Consensus 5 i~~~~--Gd~v~i~~~N~~~ 22 (75)
|++++ ||.|++++.+...
T Consensus 176 l~LtkK~~d~V~v~fsG~vt 195 (264)
T 1zru_A 176 LQLTKKNNDLVIVRFFGSVS 195 (264)
T ss_dssp EEEEEETTTEEEEEEEEEEC
T ss_pred EEEEEecCCEEEEEEeeeEe
Confidence 44444 9999999998764
No 151
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=48.29 E-value=4.6 Score=22.56 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=13.4
Q ss_pred ccEEEecCCEEEEEEEeCC
Q psy88 3 YPKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~ 21 (75)
+++++++|++++|.+.+..
T Consensus 32 Y~~~a~aGQ~l~V~ls~~~ 50 (114)
T 4dzg_A 32 YTLVAXAGQTMTVXIGGSS 50 (114)
T ss_dssp EECCC-CCCEEEC-CEEST
T ss_pred EEEEecCCCEEEEEeCCCC
Confidence 5678999999999994443
No 152
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.87 E-value=32 Score=18.73 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=32.8
Q ss_pred ecCCEEEEEEEeCCCCCCceEEeCCccc-cCCCCCCCCCcccccccCCCCEEEEEEc---CCCeee
Q psy88 8 CEGDRVVVDVRNSMDGLENTIHWHGIHQ-RGTQYSDGVPFVTQCPITQGNTFRYQFT---ANAGTH 69 (75)
Q Consensus 8 ~~Gd~v~i~~~N~~~~~~~~iH~HG~~~-~~~~~~DG~~~~~~~~i~pG~~~~y~~~---~~~Gt~ 69 (75)
+.=.+..+.++|..+ .+..+.|.-... ... | +.--+.||++....+. ..+|.|
T Consensus 40 ~~~~~~~~~l~N~g~-~~~~f~~~~~~~F~i~------P--~~g~L~pg~~~~i~V~F~P~~~g~~ 96 (122)
T 2ys4_A 40 KYSTQKILLVRNIGN-KNAVFHIKTCRPFSIE------P--AIGTLNVGESMQLEVEFEPQSVGDH 96 (122)
T ss_dssp SSCEEEEEEEECCSS-SCEEEEEECCTTEEEE------S--SEEEECTTCEEEEEEEECCSSSBCC
T ss_pred CCeEEEEEEEEECCC-CCEEEEEecCCCeEEE------C--CcCEECCCCEEEEEEEEEcCCCccE
Confidence 334466788999887 677777764211 111 1 1223889999988877 555543
No 153
>4g4f_A Tumor necrosis factor ligand superfamily member 1; glucocorticoid-induced TNF receptor ligand, immune system, T structural genomics; 1.85A {Otolemur garnettii}
Probab=46.24 E-value=12 Score=21.64 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=15.2
Q ss_pred cEEEecCCEEEEEEEeCC
Q psy88 4 PKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~ 21 (75)
+.++++||+|-|.+.|..
T Consensus 89 VF~L~~GD~Ifv~vn~~~ 106 (126)
T 4g4f_A 89 TYEFHAGDIIDLIFDDEH 106 (126)
T ss_dssp EEEECTTCEEEEEESCGG
T ss_pred EEEeCCCCEEEEEEcCHH
Confidence 468899999999988764
No 154
>1u5x_A Tumor necrosis factor ligand superfamily member 1; TNFSF, cytokine, jelly-roll, trimer, hormone-growth factor C; 1.80A {Mus musculus} SCOP: b.22.1.1 PDB: 1u5y_A 1u5z_A 3k48_A 1xu1_A 1xu2_A
Probab=45.86 E-value=11 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.3
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
.+++++||+|.|++.+.
T Consensus 106 vf~L~~GD~l~v~v~~~ 122 (140)
T 1u5x_A 106 VFHLHQGDIITVKIPRA 122 (140)
T ss_dssp EEEECTTCEEEEEESST
T ss_pred EEEeCCCCEEEEEecCC
Confidence 46899999999997764
No 155
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=45.61 E-value=18 Score=24.81 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=20.9
Q ss_pred ccccCCCCEEEEEEc---CCCeeeEEcc
Q psy88 49 QCPITQGNTFRYQFT---ANAGTHFWHA 73 (75)
Q Consensus 49 ~~~i~pG~~~~y~~~---~~~Gt~~YH~ 73 (75)
-..++.|+.+.|++. ..||+|.-|.
T Consensus 109 s~~l~~G~~Y~fki~lkaR~PG~~HVH~ 136 (419)
T 3rfr_A 109 SVSLEIGKDYAFSINLRGRRAGRWHVHA 136 (419)
T ss_dssp CBCCCTTCEEEEEEEEEECSCEEEEEEE
T ss_pred eEEecCCCeEeEEEEEecccCcccccce
Confidence 345889999999988 7899998885
No 156
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=45.07 E-value=14 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=14.1
Q ss_pred ccEEEecCCEEEEEEE
Q psy88 3 YPKNVCEGDRVVVDVR 18 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~ 18 (75)
-+|.+++||+|.|++.
T Consensus 115 ~vL~L~~GD~Vwv~l~ 130 (442)
T 4dou_A 115 VLLHLEVGDQVWLQVY 130 (442)
T ss_dssp EEEEECTTCEEEEEEC
T ss_pred eEEEEcCCCEEEEEEe
Confidence 3689999999999995
No 157
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=44.30 E-value=13 Score=19.72 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.5
Q ss_pred EEecCCEEEEEEEeCCC
Q psy88 6 NVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~~ 22 (75)
.++.||+|++.+.....
T Consensus 61 ~lk~Gd~V~F~~~~~~~ 77 (88)
T 2vb2_X 61 EIKTGDKVAFNFVQQGN 77 (88)
T ss_dssp CCCTTCEEEEEEEEETT
T ss_pred cCCCCCEEEEEEEEeCC
Confidence 46889999999986643
No 158
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=44.12 E-value=14 Score=19.28 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.4
Q ss_pred EEecCCEEEEEEEeCCC
Q psy88 6 NVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~~ 22 (75)
.++.||+|++.+.....
T Consensus 53 ~lk~Gd~V~F~~~~~~~ 69 (80)
T 2qcp_X 53 EIKTGDKVAFNFVQQGN 69 (80)
T ss_dssp CCCTTCEEEEEEEEETT
T ss_pred cCCCCCEEEEEEEEeCC
Confidence 36789999999986643
No 159
>2q8o_A GITR ligand; TNF, dimer, unknown function; 1.75A {Mus musculus} SCOP: b.22.1.1 PDB: 3fc0_A 2qdn_A 3b9i_A
Probab=43.26 E-value=13 Score=21.45 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=13.9
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
.+.+++||+|-|++.+.
T Consensus 98 VF~L~~GD~L~v~v~~~ 114 (136)
T 2q8o_A 98 VYELHAGDNIYLKFNSK 114 (136)
T ss_dssp EEEECTTCEEEEEESCG
T ss_pred eeecCCCCEEEEEeCCh
Confidence 46889999999987653
No 160
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=49.22 E-value=5 Score=26.38 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=36.0
Q ss_pred cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHA 73 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~ 73 (75)
.|.+..|..|++.++... . | |+...+.. |+ ..-+-||..-...|. +++|+|.-.|
T Consensus 142 ~l~~P~~~~v~~~~ts~D--V---i--Hsf~vp~~----~~----k~d~~PG~~~~~~~~~~~~G~y~g~c 197 (337)
T 2yev_B 142 ELVLPAGVPVELEITSKD--V---I--HSFWVPGL----AG----KRDAIPGQTTRISFEPKEPGLYYGFC 197 (337)
Confidence 467788888888887653 1 2 55544321 11 112567888888888 9999988776
No 161
>2tnf_A Protein (tumor necrosis factor alpha); lymphokine, cytokine, cytotoxin, transmembrane, glycoprotein, signal-anchor; 1.40A {Mus musculus} SCOP: b.22.1.1 PDB: 1a8m_A 1tnf_A 2tun_A 3l9j_T 2az5_A* 3it8_A* 3alq_A 4tsv_A 5tsw_A 2e7a_A 2zpx_A 2zjc_A
Probab=43.17 E-value=13 Score=21.58 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.2
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
.+++++||+|.|++.+
T Consensus 122 vf~L~~GD~l~v~v~~ 137 (156)
T 2tnf_A 122 VFQLEKGDQLSAEVNL 137 (156)
T ss_dssp EEEECTTCEEEEEESC
T ss_pred EEEeCCCCEEEEEeCC
Confidence 4688999999998753
No 162
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=42.76 E-value=51 Score=19.50 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=18.7
Q ss_pred ccEEEecCCEEEE------EEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVV------DVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i------~~~N~~~~~~~~iH~ 30 (75)
.+.++++||.+.| .+.|..+ .+.-++|
T Consensus 128 ~~~~L~~Gds~~iP~g~~H~~~N~~d-~~Arll~ 160 (166)
T 2vpv_A 128 NKFLSVKGSTFQIPAFNEYAIANRGN-DEAKMFF 160 (166)
T ss_dssp EEEEEETTCEEEECTTCEEEEEECSS-SCEEEEE
T ss_pred EEEEEcCCCEEEECCCCCEEEEECCC-CCEEEEE
Confidence 3567888888877 4677766 5666655
No 163
>1kxg_A B lymphocyte stimulator; BAFF, TALL-1, thank, ZTNF4, cytokine, TNF superfamily, jellyroll, beta-sandwich; HET: CIT; 2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1kd7_A 1otz_A 1oqe_A 1jh5_A 1oqd_A
Probab=42.34 E-value=13 Score=21.78 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.7
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
.+++++||+|.|++.|.
T Consensus 117 Vf~L~~GD~L~v~v~~~ 133 (152)
T 1kxg_A 117 IAKLEEGDELQLAIPRE 133 (152)
T ss_dssp EEEECTTCEEEEEESST
T ss_pred eEEeCCCCEEEEEecCC
Confidence 46899999999998875
No 164
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=41.28 E-value=23 Score=20.06 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=13.4
Q ss_pred EEecCCEEEEEEEeC
Q psy88 6 NVCEGDRVVVDVRNS 20 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~ 20 (75)
.|+.||.|.|.+.|.
T Consensus 87 eA~~GdnVai~Ikg~ 101 (116)
T 1xe1_A 87 FAIAGDRIGISIEGK 101 (116)
T ss_dssp EEETTCEEEEEEESC
T ss_pred CcCCCCEEEEEEECC
Confidence 688999999999985
No 165
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=41.13 E-value=7.8 Score=23.23 Aligned_cols=8 Identities=25% Similarity=0.493 Sum_probs=6.0
Q ss_pred eeEEccCC
Q psy88 68 THFWHAHT 75 (75)
Q Consensus 68 t~~YH~H~ 75 (75)
.=|||+|.
T Consensus 85 vGwyHSHP 92 (178)
T 2znr_A 85 LGWIHTHP 92 (178)
T ss_dssp EEEEEECS
T ss_pred EEEEeCCC
Confidence 45999983
No 166
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=40.85 E-value=16 Score=19.19 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.2
Q ss_pred EecCCEEEEEEEeCCC
Q psy88 7 VCEGDRVVVDVRNSMD 22 (75)
Q Consensus 7 ~~~Gd~v~i~~~N~~~ 22 (75)
++.||+|++.|.....
T Consensus 48 lk~Gd~V~F~~~~~~~ 63 (82)
T 2l55_A 48 LKAGDRVAFSFRLDPH 63 (82)
T ss_dssp CSTTCEEEEEEEEETT
T ss_pred CCCCCEEEEEEEECCC
Confidence 6789999999987643
No 167
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=40.13 E-value=34 Score=20.72 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=29.0
Q ss_pred CEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc
Q psy88 11 DRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 11 d~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
...++.+.|..+ .|..|..-.+ +. +.. ......+|+||++-...+.
T Consensus 21 ~~~~~~i~N~g~-~pl~i~~~~~--p~--~~~--~~~~~~~I~PG~~g~I~vt 66 (220)
T 2qsv_A 21 GVVRLVVNNTDE-SDLQVAVVSL--PS--FVS--LDDRAFRLQAREPRELNLS 66 (220)
T ss_dssp CEEEEEEEECSS-SCEEEEEEEC--CT--TEE--CSCCEEEECSSSCEEEEEE
T ss_pred ceEEEEEEeCCC-CceEEEeccC--CC--ceE--eeeCcceeCCCCceEEEEE
Confidence 457888999998 7877765322 11 111 0112356999998887777
No 168
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=39.57 E-value=16 Score=18.02 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=10.7
Q ss_pred EEecCCEEEEEEEe
Q psy88 6 NVCEGDRVVVDVRN 19 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N 19 (75)
.+++||.|.+.+.+
T Consensus 35 gi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 35 GIAEKDALEIYVDD 48 (59)
T ss_dssp TCCTTCEEEEEEET
T ss_pred CCCCCCEEEEEEEC
Confidence 45789998888765
No 169
>2rjl_A TNF superfamily ligand TL1A; TNFSF, cytokine, mutant, membrane, transmembrane; 2.05A {Homo sapiens} PDB: 3k51_A 3mi8_A 2rjk_A 2qe3_A 2o0o_A 2re9_A
Probab=39.08 E-value=16 Score=21.80 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.4
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
.+++++||+|.|++.+
T Consensus 150 vf~L~~GD~L~v~v~~ 165 (184)
T 2rjl_A 150 MFSLQEGDKLMVNVSD 165 (184)
T ss_dssp EEEECTTCEEEEEESC
T ss_pred EEEeCCCCEEEEEECC
Confidence 4689999999998854
No 170
>1s55_A Tumor necrosis factor ligand superfamily member 11; cytokine; 1.90A {Mus musculus} SCOP: b.22.1.1 PDB: 1iqa_A 3qbq_A 3me2_A 1jtz_X 3nzy_A
Probab=38.51 E-value=13 Score=21.52 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.2
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
.+.+++||+|.|++.+
T Consensus 119 vf~L~~GD~l~v~v~~ 134 (156)
T 1s55_A 119 FFKLRAGEEISIQVSN 134 (156)
T ss_dssp EEEECTTEEEEEEESC
T ss_pred EEEeCCCCEEEEEeCC
Confidence 4688999999998754
No 171
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=38.24 E-value=11 Score=21.70 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=14.2
Q ss_pred CcccEEEecCCEEEEEEE
Q psy88 1 MLYPKNVCEGDRVVVDVR 18 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~ 18 (75)
|+.+=++..|++++|++.
T Consensus 17 mPV~k~I~~GeTvEIR~~ 34 (124)
T 2l7q_A 17 MPVADEIAGDETVEIRLE 34 (124)
T ss_dssp CCCCSCCCSSEEEEEEEE
T ss_pred eccccccCCCCeEEEEEE
Confidence 455567788999999876
No 172
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=37.98 E-value=29 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=20.1
Q ss_pred cccCCCCEEEEEEc---CCCeeeEEcc
Q psy88 50 CPITQGNTFRYQFT---ANAGTHFWHA 73 (75)
Q Consensus 50 ~~i~pG~~~~y~~~---~~~Gt~~YH~ 73 (75)
..++.|+.+.|++. ..||+|.-|.
T Consensus 82 ~~le~G~~Y~fki~lkAR~PG~~HVH~ 108 (382)
T 1yew_A 82 VRLEIGKTYDFRVVLKARRPGDWHVHT 108 (382)
T ss_dssp BCCCTTCEEEEEEEEEECSCEEEEEEE
T ss_pred EEecCCCeEeEEEEEecccCcccccee
Confidence 34889999999988 7899998885
No 173
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=37.79 E-value=10 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.0
Q ss_pred EEEecCCEEEEEEEeCCC
Q psy88 5 KNVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N~~~ 22 (75)
+.++-||.|+|.+....+
T Consensus 120 L~LkDGD~V~I~v~~~~~ 137 (146)
T 2oyn_A 120 FNLKDGDVIKILIKGDKD 137 (146)
T ss_dssp HTCCTTCEEEEEEECCTT
T ss_pred cCCCCCCEEEEEEeCCCC
Confidence 557889999999987765
No 174
>1aly_A CD40 ligand; cytokine, TNF, hyper-IGM syndrome; 2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1i9r_A 3qd6_A* 3lkj_A*
Probab=37.38 E-value=13 Score=21.34 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.1
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
.+.+++||+|.|++.+
T Consensus 113 vf~L~~GD~l~v~v~~ 128 (146)
T 1aly_A 113 VFELQPGASVFVNVTD 128 (146)
T ss_dssp EEEEBTTBCEEEEESC
T ss_pred eEEeCCCCEEEEEeCC
Confidence 4688999999998754
No 175
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=37.26 E-value=13 Score=21.47 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.1
Q ss_pred CcccEEEecCCEEEEEEE
Q psy88 1 MLYPKNVCEGDRVVVDVR 18 (75)
Q Consensus 1 ~~~~i~~~~Gd~v~i~~~ 18 (75)
|+.+=.+..|++|+|++.
T Consensus 18 mPV~k~I~~GeTvEIR~~ 35 (130)
T 2l3b_A 18 MPVPKKLKVGETAEIRCQ 35 (130)
T ss_dssp CCCCSSCCTTCEEEEEEE
T ss_pred eccccccCCCCeEEEEEE
Confidence 455556788999999987
No 176
>2ahn_A Thaumatin-like protein; allergen; 1.30A {Prunus avium}
Probab=36.95 E-value=76 Score=19.80 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=16.1
Q ss_pred ccCCCCEEEEEEc-CCCeeeE
Q psy88 51 PITQGNTFRYQFT-ANAGTHF 70 (75)
Q Consensus 51 ~i~pG~~~~y~~~-~~~Gt~~ 70 (75)
.+.||+++++..+ .-.|.+|
T Consensus 32 ~L~~G~s~s~~~p~~WsGRiW 52 (222)
T 2ahn_A 32 ELASQASFQLDTPVPWNGRFW 52 (222)
T ss_dssp CBCTTCEEEEECCSSEEEEEE
T ss_pred EcCCCCEEEEecCCCcceeEE
Confidence 4889999999988 5567776
No 177
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=36.57 E-value=21 Score=19.61 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=12.7
Q ss_pred EEecCCEEEEEEEeC
Q psy88 6 NVCEGDRVVVDVRNS 20 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~ 20 (75)
.++.||+|+|++.-.
T Consensus 3 ~f~~GDtv~V~~~i~ 17 (98)
T 2ftc_K 3 EFYVGSILRVTTADP 17 (98)
T ss_pred ccCCCCEEEEEEEEC
Confidence 468899999999866
No 178
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=36.51 E-value=77 Score=19.72 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=32.9
Q ss_pred ccEEEecCCEEEEE--EEeCCCCCCce--EEeCCcc-ccCCCCCCCCCcccccccCCCCEEEEEEc---CCCee
Q psy88 3 YPKNVCEGDRVVVD--VRNSMDGLENT--IHWHGIH-QRGTQYSDGVPFVTQCPITQGNTFRYQFT---ANAGT 68 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~--~~N~~~~~~~~--iH~HG~~-~~~~~~~DG~~~~~~~~i~pG~~~~y~~~---~~~Gt 68 (75)
++-.+++||.+.|. +.|.++ .... +.+.... +.... ..+.......-|+++++.++.|. ...|.
T Consensus 88 LP~sv~rGE~~~l~~~V~Ny~~-~~~~v~V~l~~~~~~~~~~-~~~~~~~~~v~v~a~~~~~v~f~i~p~~~G~ 159 (252)
T 3hrz_B 88 MPYSVVKNEQVEIRAILHNYVN-EDIYVRVELLYNPAFCSAS-TKGQRYRQQFPIKALSSRAVPFVIVPLEQGL 159 (252)
T ss_dssp CCSCEETTCCEEEEEEEEECSS-SCEEEEEEECCCTTEEESC-CSSCCEEEEEEECTTEEEEEEEEEEECSSEE
T ss_pred CCcEEeeCCEEEEEEEEEcccC-ceEEEEEEEEcCCceEeec-CCCCceEEEEEECCCCeEEEEEEEEeccCCc
Confidence 34567899996655 569887 4422 2222111 00000 01111111234788999999887 45563
No 179
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}
Probab=34.70 E-value=54 Score=17.43 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=19.5
Q ss_pred ccEEEecCCEEEEEEEeCCCC---CCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG---LENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~---~~~~iH~ 30 (75)
..+.+++|+.|.|.-.=.... ....++|
T Consensus 9 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W 39 (126)
T 4ffy_L 9 ASLAVSLGQRATISCRASESVDHYGNSFIYW 39 (126)
T ss_dssp SEEEEETTSCEEEEEEESSCCEETTEECEEE
T ss_pred CeEEEeCCCCEEEEEecCCCcccCCCceEEE
Confidence 458899999999987644331 1456777
No 180
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=34.62 E-value=11 Score=17.98 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=11.9
Q ss_pred EEEecCCEEEEEEEeC
Q psy88 5 KNVCEGDRVVVDVRNS 20 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N~ 20 (75)
+-+++||.|.+.+.+.
T Consensus 24 lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 24 FQIKEGDLVKVTFDES 39 (53)
T ss_dssp SCCCTTCEEEEEECSS
T ss_pred cCcCCCCEEEEEEECC
Confidence 3467899999987654
No 181
>1dg6_A APO2L/TNF-related apopotis inducing ligand (trail; cytokine, trimer, zinc-binding site, apoptosis; 1.30A {Homo sapiens} SCOP: b.22.1.1 PDB: 1du3_D 1d2q_A 1d0g_A 1d4v_B
Probab=34.32 E-value=21 Score=21.66 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=13.5
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
.+.+++||+|.|++.|
T Consensus 157 vf~L~~GD~L~v~vs~ 172 (191)
T 1dg6_A 157 IFELKENDRIFVSVTN 172 (191)
T ss_dssp EEEECTTCEEEEEESS
T ss_pred eEEeCCCCEEEEEeCC
Confidence 4688999999998865
No 182
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=33.90 E-value=12 Score=21.53 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=6.0
Q ss_pred eeEEccCC
Q psy88 68 THFWHAHT 75 (75)
Q Consensus 68 t~~YH~H~ 75 (75)
.=|||||.
T Consensus 79 vG~yHSHP 86 (153)
T 2kcq_A 79 VGVYHSHP 86 (153)
T ss_dssp EEEEEECS
T ss_pred EEEEeCCC
Confidence 45999983
No 183
>2bhv_A COMB10; bacterial protein, bacterial type IV secretion; 3.00A {Helicobacter pylori}
Probab=33.86 E-value=27 Score=22.21 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.0
Q ss_pred cccEEEecCCEEEEEEEeCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~ 21 (75)
++||++++|++|.|.+.-.+
T Consensus 211 ~PTl~i~~G~~v~V~v~rDl 230 (246)
T 2bhv_A 211 APIVVIREGSRVFISPNTDI 230 (246)
T ss_dssp CCCCEECTTCEEEEEESSEE
T ss_pred CCeEEECCCCEEEEEEccce
Confidence 68999999999988765443
No 184
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=33.73 E-value=17 Score=19.14 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=12.0
Q ss_pred EEEecCCEEEEEEEe
Q psy88 5 KNVCEGDRVVVDVRN 19 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N 19 (75)
|++.+||.|.|.+..
T Consensus 52 I~Il~GD~V~ve~~~ 66 (79)
T 3i4o_A 52 IRILPEDRVVVELSP 66 (79)
T ss_dssp CCCCTTCEEEEEEET
T ss_pred ccCCCCCEEEEEECc
Confidence 567889999998764
No 185
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=32.92 E-value=1.4e+02 Score=21.86 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=30.4
Q ss_pred EEEEEEEeCCCCCC---ceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc---CCCee
Q psy88 12 RVVVDVRNSMDGLE---NTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT---ANAGT 68 (75)
Q Consensus 12 ~v~i~~~N~~~~~~---~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~---~~~Gt 68 (75)
.+.|.|+|-++ .+ ..++.-|.... .+.--.....|.||++.++++. ..+|.
T Consensus 611 ~v~v~f~NPL~-~~L~~c~~~vEG~GL~-----~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~ 667 (692)
T 1vjj_A 611 NVQMLFSNPLD-EPVRDCVLMVEGSGLL-----LGNLKIDVPTLGPKERSRVRFDILPSRSGT 667 (692)
T ss_dssp EEEEEEECCSS-SCBCSEEEEEECTTTS-----SSCEEEEECCBCTTCEEEEEEEECCCSCEE
T ss_pred EEEEEEECCCC-CcccceEEEEECCCCC-----CCceEEEcCccCCCCEEEEEEEEEeccccc
Confidence 45788899998 44 34454443221 1111112235899999999887 56674
No 186
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=32.85 E-value=79 Score=22.71 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=30.0
Q ss_pred cEEEecCCEEEE--EEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc
Q psy88 4 PKNVCEGDRVVV--DVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 4 ~i~~~~Gd~v~i--~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
|--+++||.+.| .+.|.++ ....+...-..........+.......-|++|++.++.|+
T Consensus 161 P~~v~~GD~~~i~~~V~N~~~-~~~~v~v~l~~~~~~~~~~~~~~~~~~~v~a~~~~~v~f~ 221 (767)
T 4fxk_B 161 PMSVRRFEQLELRPVLYNYLD-KNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFS 221 (767)
T ss_dssp CSCEETTCEEEECCEEEECSS-SCEEEEEEECCCTTEECSSSSCCCEEEEECSSCEEECCEE
T ss_pred CCeeccCCEEEEEEEEEECCC-CCEEEEEEEEecCCeEEecCCceeEEEEEcCCCeEEEEEE
Confidence 445789999887 5569887 4544332211000000000001111334788888887776
No 187
>3jqo_A TRAF protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli}
Probab=32.32 E-value=27 Score=22.01 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=17.3
Q ss_pred cccEEEecCCEEEEEEEeCCC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~ 22 (75)
++||.+++|+.|.|-+.-.++
T Consensus 197 ~PTl~i~~G~~v~I~V~rDld 217 (227)
T 3jqo_A 197 PPTLYDQQGDAVSIFVARDLD 217 (227)
T ss_dssp CCEEEECTTCEEEEECCSCEE
T ss_pred CCeEEECCCCEEEEEEecccc
Confidence 689999999999997765554
No 188
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=32.21 E-value=28 Score=17.62 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=12.6
Q ss_pred EEecCCEEEEEEEeCC
Q psy88 6 NVCEGDRVVVDVRNSM 21 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~ 21 (75)
.++.||.|++.+.+-.
T Consensus 45 ~~~~Gd~V~v~V~~vd 60 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVR 60 (80)
T ss_dssp GCCTTCEEEEEEEEEE
T ss_pred eeCCCCEEEEEEEEEE
Confidence 3678999999998653
No 189
>1osg_A Tumor necrosis factor ligand superfamily member 13B; jelly-roll, beta hairpin, protein-peptide complex, immune system; 3.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 3v56_A
Probab=32.15 E-value=21 Score=22.20 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.7
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
.+++++||+|.|++.|.
T Consensus 173 VF~L~~GD~L~V~Vs~~ 189 (208)
T 1osg_A 173 IAKLEEGDELQLAIPRE 189 (208)
T ss_dssp EEEECTTCEEEEEBCST
T ss_pred eEEeCCCCEEEEEecCC
Confidence 46899999999998875
No 190
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=32.08 E-value=56 Score=16.83 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=19.9
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+++|+.|.+.=.=... ....++|
T Consensus 11 p~~~~~~~G~~v~L~C~~~~~-~~~~v~W 38 (111)
T 1i3g_L 11 HKFMSTSVGDRVSITCKASQD-VGTAVAW 38 (111)
T ss_dssp CSEEECCTTCCEEEEEEESSC-CTTCEEE
T ss_pred CCEEEEcCCCCEEEEEEeCCC-CCCCEEE
Confidence 345789999999998775433 2456888
No 191
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.77 E-value=20 Score=20.05 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.4
Q ss_pred ccEEEecCCEEEEEEE
Q psy88 3 YPKNVCEGDRVVVDVR 18 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~ 18 (75)
..|++++||.|.|.+.
T Consensus 50 k~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 50 KNIWIKRGDFLIVDPI 65 (111)
T ss_dssp SCCCCCSSCEEEEEEC
T ss_pred ccEEEcCCCEEEEEec
Confidence 3678999999999875
No 192
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R
Probab=31.71 E-value=65 Score=17.47 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=18.4
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+++|+.|.|.=.-... ....|+|
T Consensus 12 ~~~~v~~G~~vtL~C~~s~~-~~~~v~W 38 (128)
T 1nez_G 12 KKMDAELGQKVDLVCEVLGS-VSQGCSW 38 (128)
T ss_dssp SCEEECTTCCEEEEEEEESC-CSSCEEE
T ss_pred CeEEEcCCCCEEEEEEeCcc-CCCcEEE
Confidence 45789999999997654222 1256888
No 193
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=31.05 E-value=59 Score=21.30 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=22.2
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.|++||.+++...-... .+..+.|
T Consensus 56 ~~v~V~~G~~v~L~C~v~g~-P~p~i~W 82 (423)
T 3qs7_E 56 AAVEVDVSASITLQVLVDAP-GNISCLW 82 (423)
T ss_dssp CEEEECSSCCEEEEEECSCC-SSCEEEE
T ss_pred ccEEEecCCcEEEEEEEEcC-CCCeEEE
Confidence 36899999999999987765 5667888
No 194
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=30.78 E-value=95 Score=19.03 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=32.1
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
..+.+..|-.-.|++.|... -........||....+..++.+|.+|+....
T Consensus 27 v~V~~~~G~l~~V~~t~~~G----------~~V~G~ls~Dg~~W~~~~~L~~g~~Ytv~a~ 77 (198)
T 4hu2_A 27 VSVTAADGVLAAVTMVNDNG----------RPVAGRLSPDGLRWSTTEQLGYNRRYTLNAT 77 (198)
T ss_dssp CEEEEESSEEEEEEEECTTC----------CBCCEEECTTSSEEEECSCCCTTCEEEEEEE
T ss_pred EEEEECCCeEeEEEEECCCC----------CEEeeEECCCCCEEeeCCcCCCCCEEEEEEE
Confidence 34555566666677766432 2222222357766666778999999998887
No 195
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.67 E-value=14 Score=23.99 Aligned_cols=8 Identities=25% Similarity=0.812 Sum_probs=6.0
Q ss_pred eeEEccCC
Q psy88 68 THFWHAHT 75 (75)
Q Consensus 68 t~~YH~H~ 75 (75)
.=|||+|.
T Consensus 105 VGWYhShP 112 (306)
T 4b4t_V 105 VGWYHSHP 112 (306)
T ss_dssp SEEEEECC
T ss_pred eeEEecCC
Confidence 45999983
No 196
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=29.92 E-value=84 Score=18.26 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=21.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|.+.-.-... ....+.|
T Consensus 11 p~~~~v~~G~~v~L~C~~~~~-~~~~i~W 38 (250)
T 3esu_F 11 TSSLSASLGDRVTISCRASQD-IRNYLNW 38 (250)
T ss_dssp CSEEEECTTCCEEEEEEESSC-CTTCEEE
T ss_pred CCEEEeeCCCcEEEEEEeccc-CCceEEE
Confidence 345789999999999887755 3447777
No 197
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=29.90 E-value=61 Score=16.53 Aligned_cols=27 Identities=22% Similarity=0.614 Sum_probs=19.6
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+.+|+.|.+.=.=... ....++|
T Consensus 9 ~~~~~~~G~~v~L~C~~~~~-~~~~v~W 35 (107)
T 1i8k_A 9 ASLSVATGEKVTIRCMTSTD-IDDDMNW 35 (107)
T ss_dssp SEEECCTTCCEEEEEEESSC-CTTCEEE
T ss_pred CeEEecCCCCEEEEEEECCC-CCCcEEE
Confidence 45789999999998765433 2456888
No 198
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=29.79 E-value=49 Score=17.05 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=19.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+++|+.|.|.=.=... ....++|
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~-~~~~v~W 34 (112)
T 2z35_A 7 GGQVALSEEDFLTIHCNYSAS-GYPALFW 34 (112)
T ss_dssp CSEEEEETTCCEEECCEEECS-SCCEEEE
T ss_pred CCcEEEcCCCCEEEEEEECCC-CCCeEEE
Confidence 456889999999986553222 3457888
No 199
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=29.08 E-value=41 Score=17.92 Aligned_cols=17 Identities=12% Similarity=0.004 Sum_probs=14.3
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
.|++..|.+|+|+|..-
T Consensus 34 ~I~~~~g~~I~l~f~~f 50 (114)
T 1sfp_A 34 TIQMPPEYHVRVSIQYL 50 (114)
T ss_dssp EEECCTTCEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEeee
Confidence 58889999999998753
No 200
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=29.05 E-value=76 Score=17.38 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=19.6
Q ss_pred ccEEEecCCEEEEEEEeCCCC--CCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG--LENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~--~~~~iH~ 30 (75)
+.+.+++|+.|.|.=.-.... ....++|
T Consensus 13 ~~v~v~~G~~vtL~C~~~~~~~~~~~~v~W 42 (135)
T 1p4b_L 13 SALTTSPGETVTLTCRSSTGAVTTSNYASW 42 (135)
T ss_dssp SEEEECTTCEEEEEEEETTSSCCGGGCCEE
T ss_pred CcEEEcCCCCEEEEEEecCCCcCCCCEEEE
Confidence 458899999999987754321 1356777
No 201
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=28.89 E-value=65 Score=21.89 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=22.5
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
.+++|.+||.+.+......+ ...+..|
T Consensus 56 ~~~~v~~g~~~~L~c~~~~~-~~~~~~W 82 (527)
T 3qs9_E 56 AAVEVDVSASITLQVLVDAP-GNISCLW 82 (527)
T ss_dssp CEEEECSSCCEEEEEECSCC-SSCEEEE
T ss_pred eeEEEeccccEEEEEEEecC-CceeEEE
Confidence 37899999999999999876 4577777
No 202
>4db5_A Tumor necrosis factor ligand superfamily member 1; gitrl, glucocorticoid-induced TNF receptor ligand, immune SY tnfrsf18; HET: B3P; 1.52A {Oryctolagus cuniculus} PDB: 4e4s_A 2r30_A 3b93_A 3b94_A 2q1m_A
Probab=28.83 E-value=33 Score=19.70 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=14.6
Q ss_pred cEEEecCCEEEEEEEeCC
Q psy88 4 PKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~ 21 (75)
+.++++||.|-|.|.+..
T Consensus 87 vfeL~~GD~Ifv~vn~~~ 104 (125)
T 4db5_A 87 IYEFDAGDIIELRFNSDD 104 (125)
T ss_dssp EEEECTTCEEEEEESCGG
T ss_pred EEEecCCCEEEEEECChh
Confidence 468899999999887653
No 203
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=28.65 E-value=44 Score=21.90 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.4
Q ss_pred cccEEEecCCEEEEEEEeC
Q psy88 2 LYPKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~ 20 (75)
++.++++.||+|++.-..-
T Consensus 21 ~Pvl~V~~Gd~v~~et~D~ 39 (301)
T 3mjj_A 21 KPAISVKSGDELEVETMDA 39 (301)
T ss_dssp CCSEEEETTCEEEEEECCT
T ss_pred CCEEEECCCCEEEEEEEec
Confidence 4678999999999986543
No 204
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=28.51 E-value=68 Score=16.62 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=19.6
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+++|+.|.|.=.=... ....++|
T Consensus 9 ~~~~v~~G~~vtL~C~~~~~-~~~~v~W 35 (112)
T 1fo0_B 9 RWRLVPRGQAVNLRCILKNS-QYPWMSW 35 (112)
T ss_dssp SEEECCTTCCEEEEEEESCT-TCCEEEE
T ss_pred CeEEEecCCcEEEEEEeCCC-CCceEEE
Confidence 45789999999998764322 3457888
No 205
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=28.43 E-value=53 Score=19.10 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=13.5
Q ss_pred EEecCCEEEEEEEeCC
Q psy88 6 NVCEGDRVVVDVRNSM 21 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~ 21 (75)
.++.||.|++++.+-.
T Consensus 136 ~~~~Gd~V~vkV~~vd 151 (172)
T 2c35_B 136 VIQQDDEIRLKIVGTR 151 (172)
T ss_dssp EEETTCEEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEE
Confidence 5789999999998753
No 206
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=28.24 E-value=14 Score=20.43 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=6.2
Q ss_pred eeEEccCC
Q psy88 68 THFWHAHT 75 (75)
Q Consensus 68 t~~YH~H~ 75 (75)
.=|||||.
T Consensus 66 vG~~HSHP 73 (124)
T 1oi0_A 66 FGTVHSHP 73 (124)
T ss_dssp EEEEEEES
T ss_pred EEEEEECc
Confidence 56999983
No 207
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=28.18 E-value=39 Score=16.91 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=14.0
Q ss_pred cccEEEecCCEEEEEEE
Q psy88 2 LYPKNVCEGDRVVVDVR 18 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~ 18 (75)
+..+++.+|+.+++...
T Consensus 3 lt~v~~~~G~~v~l~C~ 19 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVH 19 (84)
T ss_dssp CCCEEECTTSCEEEECC
T ss_pred CeEEEEecCCCEEEEEE
Confidence 45689999999999875
No 208
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=28.16 E-value=74 Score=16.95 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=19.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWH 31 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~H 31 (75)
+..+.+++|+.|.|.=.=... ....++|-
T Consensus 12 p~~~~v~~G~~vtL~C~~~~~-~~~~v~Wy 40 (125)
T 3r8b_B 12 PRNKVAVTGEKVTLSCKQTNS-YFNNMYWY 40 (125)
T ss_dssp CSEEEEETTCCEEEEEEEESC-CCSEEEEE
T ss_pred CCeEEEcCCCcEEEEEEECCC-CCCeEEEE
Confidence 345789999999997654333 23478883
No 209
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=28.13 E-value=20 Score=16.63 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=12.4
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
..|.+++||.|.|.-..
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 16 SELPLKKGDVIYITREE 32 (58)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcCCCCCCCEEEEEEec
Confidence 34678899998886543
No 210
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=28.01 E-value=73 Score=16.81 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=19.8
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+++|+.|.+.=.=... ....+.|
T Consensus 11 ~~v~v~~G~~vtL~C~~~~~-~~~~v~W 37 (119)
T 2e27_L 11 SSLSASLGGKVTITCKANQD-IKKKIAW 37 (119)
T ss_dssp SEEEEETTCCEEEEEEESSC-CTTCEEE
T ss_pred CeEEEeCCCCEEEEEEeCCC-CCceEEE
Confidence 45789999999998775443 3456788
No 211
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=27.83 E-value=66 Score=16.31 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=20.0
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+.+|+.|.+.=.=... ....++|
T Consensus 9 ~~~~~~~G~~v~L~C~~~~~-~~~~v~W 35 (108)
T 1jhl_L 9 SYLVASPGETITINCRASKS-ISKSLAW 35 (108)
T ss_dssp SEEEECTTSCEEEEEEESSC-CTTCEEE
T ss_pred CeeEEcCCCCEEEEeEECCC-CCceEEE
Confidence 45789999999998775543 3457888
No 212
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=27.66 E-value=41 Score=17.61 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=16.8
Q ss_pred cCCEEEEEEEeCCCCCCceEEeCCcc
Q psy88 9 EGDRVVVDVRNSMDGLENTIHWHGIH 34 (75)
Q Consensus 9 ~Gd~v~i~~~N~~~~~~~~iH~HG~~ 34 (75)
++|+++|.-.--.+...+++|.|...
T Consensus 13 en~~~rV~r~~i~PG~~~~~H~H~~~ 38 (98)
T 3lag_A 13 DNDEVRVTEWRLPPGSATGHHTHGMD 38 (98)
T ss_dssp ESSSEEEEEEEECTTEECCSEECCSC
T ss_pred cCCeEEEEEEEECCCCccCcEECCCc
Confidence 46777776554444356788999765
No 213
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.64 E-value=40 Score=19.79 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=14.5
Q ss_pred EEEecCCEEEEEEEeCCC
Q psy88 5 KNVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N~~~ 22 (75)
..++.||.|++++.+-..
T Consensus 136 ~~~~~Gd~VrvkV~~vd~ 153 (172)
T 3h0g_G 136 QVIEKGSNVRLKIVGTRT 153 (172)
T ss_dssp CEECSSCCEEEEEEEEEE
T ss_pred cEECCCCEEEEEEEEEEC
Confidence 367899999999997543
No 214
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.57 E-value=31 Score=17.21 Aligned_cols=17 Identities=29% Similarity=0.308 Sum_probs=12.6
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
..|.+++||.|.|.-..
T Consensus 32 ~eLsf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 32 GDLNFQAGDRITVISKT 48 (80)
T ss_dssp TBCEECTTCEEEEEECC
T ss_pred CeeeEcCCCEEEEeECc
Confidence 35778999998876443
No 215
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=27.36 E-value=32 Score=19.39 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=11.8
Q ss_pred EEecCCEEEEEEEe
Q psy88 6 NVCEGDRVVVDVRN 19 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N 19 (75)
.++.||+|+|.+.-
T Consensus 18 ~f~~GDtv~V~~~i 31 (114)
T 3r8s_P 18 SFRPGDTVEVKVWV 31 (114)
T ss_dssp CCCTTCEEEEEEEE
T ss_pred ccCCCCEEEEEEEE
Confidence 57889999999874
No 216
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=27.23 E-value=24 Score=18.16 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=9.2
Q ss_pred EEEecCCEEEEE
Q psy88 5 KNVCEGDRVVVD 16 (75)
Q Consensus 5 i~~~~Gd~v~i~ 16 (75)
..++.||+|+|-
T Consensus 52 ~~L~dGD~IEIv 63 (78)
T 2k5p_A 52 TTVKDGDAVEFL 63 (78)
T ss_dssp CEECSSBCEEEC
T ss_pred ccCCCCCEEEEE
Confidence 467889998873
No 217
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=27.14 E-value=34 Score=20.42 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.9
Q ss_pred cEEEecCCEEEEEEEeCC
Q psy88 4 PKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~ 21 (75)
+.++++||.|-|.|.+..
T Consensus 128 vfELh~GDsIflnft~~~ 145 (166)
T 2r32_A 128 TYELHVGDTIDLIFNSEH 145 (166)
T ss_dssp EEEECTTCEEEEEESSGG
T ss_pred EEEecCCCEEEEEeCCHH
Confidence 568899999999987654
No 218
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=26.89 E-value=55 Score=17.14 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=20.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+++|+.|.|.=.-........++|
T Consensus 7 p~~v~v~~G~~vtL~C~~~~~~~~~~v~W 35 (114)
T 2hp4_A 7 PLDRTWNLGETVELKCQVLLSNPTSGASW 35 (114)
T ss_dssp CCSCCCCTTCCEEEEEEECCSSCCSCEEE
T ss_pred CCEEEEcCCCCEEEEEEeecCCCCceEEE
Confidence 34577899999999877543212456888
No 219
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=26.84 E-value=85 Score=18.01 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=19.9
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|++.-. ... ....+.|
T Consensus 7 p~~~~v~~G~~v~L~C~-~~~-~~~~i~W 33 (238)
T 2p1y_A 7 PRNKVAVTGGKVTLSCN-QTN-NHNNMYW 33 (238)
T ss_dssp CSEEEEETTCCEEEEEE-ECS-CCSEEEE
T ss_pred ccceEEeCCCEEEEEee-cCC-CCccEEE
Confidence 34578999999999988 332 3467888
No 220
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=26.58 E-value=10 Score=19.63 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.7
Q ss_pred cccEEEecCCEEEEEEEeC
Q psy88 2 LYPKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~ 20 (75)
+.++.+.+|.+|+|.+...
T Consensus 17 Le~l~L~EG~kV~I~I~~~ 35 (69)
T 2nwt_A 17 LQKVDLKEGERVKIKLELK 35 (69)
T ss_dssp SSCCCCCTTEEEEEECCCC
T ss_pred CCcCCCCCCCEEEEEEEec
Confidence 4567788999999999875
No 221
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}
Probab=26.55 E-value=29 Score=18.53 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=18.9
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
.++.+.+||.|.+...+........+.|
T Consensus 12 ~pv~~~~G~~VtL~c~~~~~~~~~~i~W 39 (121)
T 2edo_A 12 VHMTVVSGSNVTLNISESLPENYKQLTW 39 (121)
T ss_dssp BCCEEETTSCEEECCSSCCCSSEEEEEE
T ss_pred EEEEEEeCCCEEEeCCCCCCCceeEEEE
Confidence 4678999999998876633312345666
No 222
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=26.51 E-value=34 Score=17.71 Aligned_cols=18 Identities=22% Similarity=0.041 Sum_probs=14.7
Q ss_pred cEEEecCCEEEEEEEeCC
Q psy88 4 PKNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~ 21 (75)
.|.+++||.|+|-=+|..
T Consensus 23 ei~lk~Gd~VeVl~k~~~ 40 (71)
T 1v1c_A 23 AITLREGQYVEVLDAAHP 40 (71)
T ss_dssp BCCBCTTCEEEEEEEEET
T ss_pred eeeecCCCEEEEEEcCCC
Confidence 677899999999877653
No 223
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=26.48 E-value=76 Score=16.57 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=21.0
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWH 31 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~H 31 (75)
..+.+.+|+.|.+.=.=... ....+.|-
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~-p~~~v~W~ 36 (124)
T 3rbg_A 9 ETITVEEGQTLTLKCVTSLR-KNSSLQWL 36 (124)
T ss_dssp EEEEEETTSCEEEEEECCCC-TTCEEEEE
T ss_pred ccEEEcCCCCEEEEeEEecc-CCCEEEEE
Confidence 46789999999998765544 35678884
No 224
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.44 E-value=34 Score=16.95 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=12.9
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
..|.+++||.|.|.-..
T Consensus 25 ~eLs~~~Gd~i~v~~~~ 41 (76)
T 2epd_A 25 QELSFRRGDVLRLHERA 41 (76)
T ss_dssp TBCEECTTCEEEEEEEE
T ss_pred CccCCCCCCEEEEEEeC
Confidence 35778999998886553
No 225
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=26.43 E-value=1.8e+02 Score=21.26 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=30.1
Q ss_pred EEEEEEEeCCCCCC---ceEEeCCccccCCCCCCCCCcccc-cccCCCCEEEEEEc---CCCee
Q psy88 12 RVVVDVRNSMDGLE---NTIHWHGIHQRGTQYSDGVPFVTQ-CPITQGNTFRYQFT---ANAGT 68 (75)
Q Consensus 12 ~v~i~~~N~~~~~~---~~iH~HG~~~~~~~~~DG~~~~~~-~~i~pG~~~~y~~~---~~~Gt 68 (75)
.+.|.|+|-++ .+ ..++.-|.... .+.--..- ..|.||++.++.+. ..+|.
T Consensus 604 ~v~v~f~NPL~-~~L~~c~~~vEG~GL~-----~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~ 661 (687)
T 2q3z_A 604 VAEVSLQNPLP-VALEGCTFTVEGAGLT-----EEQKTVEIPDPVEAGEEVKVRMDLVPLHMGL 661 (687)
T ss_dssp EEEEEEECCSS-SCBCSEEEEEECTTTC-----SSCEEEEECSCBCTTCEEEEEEEECCCSSSC
T ss_pred EEEEEEECCCC-CcccceEEEEECCCCC-----CCceEEecCCCcCCCCEEEEEEEEEeccccc
Confidence 35788899998 44 34455553322 11001112 35899999999887 55664
No 226
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=26.30 E-value=59 Score=20.01 Aligned_cols=16 Identities=0% Similarity=0.048 Sum_probs=13.5
Q ss_pred EEEecCCEEEEEEEeC
Q psy88 5 KNVCEGDRVVVDVRNS 20 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N~ 20 (75)
...+.||.|++++.+.
T Consensus 138 ~~~~~Gd~VrvrV~~v 153 (218)
T 2ckz_B 138 LYFDVNEKIRFRIERE 153 (218)
T ss_dssp EEECTTCEEEEEEEEE
T ss_pred cEEcCCCEEEEEEEEE
Confidence 4678999999999874
No 227
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=26.20 E-value=19 Score=22.30 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=5.0
Q ss_pred eEEccC
Q psy88 69 HFWHAH 74 (75)
Q Consensus 69 ~~YH~H 74 (75)
=|||+|
T Consensus 119 GWyHSH 124 (211)
T 3rzv_A 119 GWIHTH 124 (211)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 389998
No 228
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=26.16 E-value=73 Score=16.25 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=19.8
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+++|+.|.+.=.=... ....+.|
T Consensus 10 p~~~~v~~G~~v~L~C~~~~~-~~~~v~W 37 (109)
T 2q20_A 10 PSSLSASVGDRVTITCQASQD-ISNYLNW 37 (109)
T ss_dssp CSEEEECTTCCEEEEEEESSC-CTTCEEE
T ss_pred CCEEEecCCCcEEEEEeeccC-CCCcEEE
Confidence 346789999999998764433 2456777
No 229
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=26.09 E-value=16 Score=20.78 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=6.0
Q ss_pred eeEEccCC
Q psy88 68 THFWHAHT 75 (75)
Q Consensus 68 t~~YH~H~ 75 (75)
.-|||||.
T Consensus 77 vG~~HSHP 84 (146)
T 2kks_A 77 LGNFHSHP 84 (146)
T ss_dssp EEEEEEES
T ss_pred EEEEeCCC
Confidence 46899983
No 230
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=25.79 E-value=21 Score=19.35 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=8.8
Q ss_pred EEecCCEEEEE
Q psy88 6 NVCEGDRVVVD 16 (75)
Q Consensus 6 ~~~~Gd~v~i~ 16 (75)
.++.||+|+|.
T Consensus 73 ~L~dGDRVEIy 83 (97)
T 2hj1_A 73 VLKEGDRIEIY 83 (97)
T ss_dssp BCCTTCEEEEC
T ss_pred cCCCCCEEEEE
Confidence 46889999983
No 231
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=25.62 E-value=76 Score=17.65 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=21.0
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWH 31 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~H 31 (75)
.++.+.+|+.|.+.-..... ....+.|-
T Consensus 7 ~~~~v~~G~~v~L~C~~~~~-~~~~v~W~ 34 (208)
T 3r4d_A 7 VPPQVAEDNNVLLLVHNLPL-ALGAFAWY 34 (208)
T ss_dssp ESSEEETTCCEEEEEECCCS-SCSEEEEE
T ss_pred ccceeecCCcEEEEEeCCCC-CceEEEec
Confidence 35678999999999986554 45677883
No 232
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=25.56 E-value=97 Score=17.42 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=26.9
Q ss_pred ecCCEE--EEEEEeCCCCCCceEEeCCccccCCCCCCCCCccc---ccccCCCCEEE--EEEc
Q psy88 8 CEGDRV--VVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVT---QCPITQGNTFR--YQFT 63 (75)
Q Consensus 8 ~~Gd~v--~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~---~~~i~pG~~~~--y~~~ 63 (75)
.+||.+ .++++|+.. .... -+.+.+....-..|...+. -..|++|++.+ +.|.
T Consensus 13 ~~g~~vTvsatVkN~Gt-~~s~--a~~V~~yl~~p~~gg~~vgt~tv~~LaaG~s~t~~v~~~ 72 (122)
T 2kut_A 13 FEGEEITVSARVTNRGA-AEAH--NVPVAVYLGNPAQGGVEIGRDTISRIPVGGTGLARVQWK 72 (122)
T ss_dssp CTTCEEEEEEEEECCSS-SCBC--CCCEEECSSCTTTCCCCCBCCCCSCBCTTCEEECCEEEE
T ss_pred CCCCeEEEEEEEEeCCC-cccC--cEEEEEEeCCCccCCeEEeeEEccccCCCCeEEEEEEEe
Confidence 456766 567889876 3322 1344332110001111111 23588999999 6666
No 233
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=25.25 E-value=22 Score=18.01 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=9.1
Q ss_pred EEEecCCEEEEE
Q psy88 5 KNVCEGDRVVVD 16 (75)
Q Consensus 5 i~~~~Gd~v~i~ 16 (75)
..++.||+|+|-
T Consensus 48 ~~L~dGD~veIv 59 (73)
T 2kl0_A 48 TPVTAGDEIEIL 59 (73)
T ss_dssp CBCCTTCEEEEE
T ss_pred ccCCCCCEEEEE
Confidence 357889998874
No 234
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*
Probab=25.24 E-value=81 Score=16.44 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=19.6
Q ss_pred cccEEEecCCEEEEEEEeCCCC---CCceEEeC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG---LENTIHWH 31 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~---~~~~iH~H 31 (75)
+..+.+.+|+.|.+.=.=.... ....++|-
T Consensus 14 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~ 46 (120)
T 3noi_A 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWF 46 (120)
T ss_dssp CSEEEEETTSCEEECCEECCCTTSCCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEeeecCCCCCCceeEEEEE
Confidence 4568899999999875433220 14568884
No 235
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=25.16 E-value=53 Score=17.55 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.2
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
+|++.+|.+|+|+|..-
T Consensus 33 ~I~~~~g~~I~l~f~~f 49 (116)
T 1spp_B 33 TILMKPDQKVRMAIPYL 49 (116)
T ss_dssp EEECCTTCEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEeeC
Confidence 58889999999998853
No 236
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=25.14 E-value=24 Score=16.13 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=10.6
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 16 eLs~~~Gd~i~v~~ 29 (54)
T 2a28_A 16 EISIDPGDIITVIR 29 (54)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CccCCCCCEEEEEE
Confidence 46678999987753
No 237
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=25.10 E-value=24 Score=16.42 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=10.7
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 18 eLs~~~Gd~i~v~~ 31 (60)
T 2v1q_A 18 ELTIKSGDKVYILD 31 (60)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CccCCCCCEEEEEe
Confidence 56778999988753
No 238
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=24.90 E-value=1.2e+02 Score=18.21 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=31.0
Q ss_pred EEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC--CCccccccc----CCCCEEEEEEc-CCCeeeE
Q psy88 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--VPFVTQCPI----TQGNTFRYQFT-ANAGTHF 70 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG--~~~~~~~~i----~pG~~~~y~~~-~~~Gt~~ 70 (75)
.-+.||.|+|++.=... ++- ||..+.. .|.+. .|...+..| .++.++...+. +-..+||
T Consensus 80 tkk~~d~V~v~~~G~vt----~i~-sg~~~~g-~wvp~~f~P~~~~slvgH~ag~~~sfHIdi~p~G~~~wW 145 (165)
T 3d8m_A 80 TKKNNDLVIVRFFGSVS----NIQ-KGWNMSG-TWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWW 145 (165)
T ss_dssp EEETTTEEEEEEEEEEC----SBC-TTCBCCS-CCCCGGGCCSSCEEEEEEETTSSCEEEEEECTTSCEEEC
T ss_pred EEccCCEEEEEEeeEEE----eEE-ccceeec-ceecCCccccceeEeeeeeccCcceeEEEeCCCCcEEEe
Confidence 33449999998887643 222 6654432 12222 133332222 36777777777 5555554
No 239
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=24.83 E-value=78 Score=16.10 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=19.8
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|.+.=.=... ....+.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~-~~~~v~W 35 (108)
T 1qfw_M 8 PKSMSMSVGERVTLSCKASET-VDSFVSW 35 (108)
T ss_dssp CSCEECCTTCCEEEEEEESSC-CCSCEEE
T ss_pred CCeEEEcCCCCEEEEeeeCCC-CCcEEEE
Confidence 345789999999998765433 2446888
No 240
>1n67_A Clumping factor; DEV-IGG, IGG, immunoglobulin, IGSF, fibrinongen-binding, cell adhesion; 1.90A {Staphylococcus aureus} SCOP: b.2.3.4 b.2.3.4 PDB: 2vr3_A
Probab=24.81 E-value=61 Score=21.49 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=27.2
Q ss_pred EecCCEEEEEEEeCCCCCCceEEeCCccccCC--CCCCCCCcccccccCCCCEEEEEEc
Q psy88 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGT--QYSDGVPFVTQCPITQGNTFRYQFT 63 (75)
Q Consensus 7 ~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~--~~~DG~~~~~~~~i~pG~~~~y~~~ 63 (75)
+++||...|.|.+. +-++|+..... .-.++..-++..-+.+..+.+|.|.
T Consensus 68 vk~GDyFti~Lp~~-------l~~~~~~~~~~~~~I~~~g~viA~~~vd~~~~ityTFT 119 (359)
T 1n67_A 68 AVKGDTFKITVPKE-------LNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYTFT 119 (359)
T ss_dssp CCTTCEEEEBCCTT-------EEESSSSTTCCCCCEEETTEEEEEEEECTTSCEEEEEC
T ss_pred CCCCCEEEEECCCC-------EeecCcccccccccccCCCeEEEEEEECCCCeEEEEec
Confidence 57888888875544 34466532110 0012222233334555578999998
No 241
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=24.75 E-value=27 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.128 Sum_probs=10.5
Q ss_pred EEecCCEEEEEEE
Q psy88 6 NVCEGDRVVVDVR 18 (75)
Q Consensus 6 ~~~~Gd~v~i~~~ 18 (75)
.++.||.|+|.=.
T Consensus 49 ~~k~GD~V~I~E~ 61 (89)
T 1qd7_I 49 EAKVGDIVKIMET 61 (89)
T ss_pred CCCCCCEEEEEEc
Confidence 5789999999754
No 242
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=24.70 E-value=78 Score=16.07 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=18.9
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.+.+.-.=... ..-.+.|
T Consensus 14 ~~~~~v~~G~~v~l~C~~~g~-p~p~i~W 41 (114)
T 2cqv_A 14 PEDQKVRAGESVELFGKVTGT-QPITCTW 41 (114)
T ss_dssp CCSEEEETTCCEEEEEEEESS-SSCEEEE
T ss_pred CCCeEEeCCCeEEEEEEEEcC-CCCEEEE
Confidence 356789999999887654433 2345666
No 243
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=24.70 E-value=85 Score=16.51 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=20.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|.+.=.=... ....++|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~-~~~~v~W 35 (120)
T 1mqk_L 8 PVSLSASVGETVTITCRASEN-IYSYLAW 35 (120)
T ss_dssp CSEEEECTTCCEEEEEEESSC-CTTCEEE
T ss_pred CCeEEEcCCCcEEEEEEeCCC-CCceEEE
Confidence 346789999999998764433 2456788
No 244
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=24.70 E-value=45 Score=21.47 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=12.8
Q ss_pred ccEEEecCCEEEEEEE
Q psy88 3 YPKNVCEGDRVVVDVR 18 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~ 18 (75)
..|+++.||++.+.|.
T Consensus 81 v~l~LRpGd~vsF~V~ 96 (280)
T 2p26_A 81 VTLYLRPGQAAAFNVT 96 (280)
T ss_dssp EEEEECTTCCEEEEEE
T ss_pred EEEEecCCCeEEEEEE
Confidence 4678999999887765
No 245
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=24.67 E-value=19 Score=18.22 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=11.6
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|+..+||.|.+.+.
T Consensus 44 ~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 44 YIRILPGDRVVVEIT 58 (71)
T ss_dssp CCCCCTTCEEEEECC
T ss_pred CcCCCCCCEEEEEEE
Confidence 356679999999865
No 246
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=24.57 E-value=54 Score=17.33 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=14.1
Q ss_pred cEEEecCCEEEEEEEeC
Q psy88 4 PKNVCEGDRVVVDVRNS 20 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~ 20 (75)
.|++..|..|+|+|..-
T Consensus 30 ~I~~~~g~~I~l~f~~f 46 (109)
T 1spp_A 30 TLQVDPKYKLLVSIPTL 46 (109)
T ss_dssp EEECCTTSEEEEEEEEE
T ss_pred EEEcCCCCEEEEEEeee
Confidence 58888999999998753
No 247
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Probab=24.52 E-value=62 Score=17.19 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=19.9
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWH 31 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~H 31 (75)
.++.+.+|+.|.+.+.|... ....+-|.
T Consensus 8 ~p~~~~~G~~v~L~~~~~p~-~~~~i~W~ 35 (111)
T 2qsq_A 8 TPFNVAEGKEVLLLVHNLPQ-HLFGYSWY 35 (111)
T ss_dssp ESSEEETTSCEEEEEESCCS-SEEEEEEE
T ss_pred ccceeccCCCEEEEEeCCCC-CceEEEEE
Confidence 35678999999999998433 33457773
No 248
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=24.50 E-value=80 Score=16.09 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=19.5
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|.+.=.=........+.|
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W 36 (113)
T 1zox_A 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYW 36 (113)
T ss_dssp CSEEEEETTSCEEEEEEECGGGTTSCEEE
T ss_pred CCEEEEeCCCcEEEEeECCCCcccceEEE
Confidence 45688999999999776443212345777
No 249
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=24.49 E-value=25 Score=16.29 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.4
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 17 ELRLAEGDIVFISYK 31 (59)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEc
Confidence 567889999988544
No 250
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=24.18 E-value=85 Score=16.28 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=20.1
Q ss_pred cccEEEecCCEEEEEEEeCCCC-CCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~ 30 (75)
+..+.+++|+.|.+.=.=.... ....++|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W 36 (113)
T 1sq2_N 7 PRSVTKETGESLTINCVLRDASYALGSTCW 36 (113)
T ss_dssp CSEEEECTTCCEEEEEEECSCSSCCCCEEE
T ss_pred CccEEEecCCCEEEEEEECCCcCCCCEEEE
Confidence 3467899999999987744321 1356888
No 251
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=24.16 E-value=1e+02 Score=17.22 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=19.6
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+++|+.|.|.=.=... ....|.|
T Consensus 24 ~~v~v~~G~sVtL~C~~s~~-~~~~v~W 50 (146)
T 2yc1_B 24 ATLSVSPGERATLSCRASQS-VRSYLAW 50 (146)
T ss_dssp SEEEECTTSCEEEEEEESSC-CTTCEEE
T ss_pred CEEEEecCCCEEEEEEECCC-CCCEEEE
Confidence 45789999999998775433 2446788
No 252
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=24.10 E-value=30 Score=16.12 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=11.7
Q ss_pred ccEEEecCCEEEEEEE
Q psy88 3 YPKNVCEGDRVVVDVR 18 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~ 18 (75)
..|.+++||.|.|.-.
T Consensus 19 ~eLs~~~Gd~i~v~~~ 34 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRV 34 (59)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3566789999887644
No 253
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=23.95 E-value=1e+02 Score=17.12 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=19.8
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+++|+.|.|.=.=... ....++|
T Consensus 8 ~~v~v~~G~~vtL~C~~s~~-~~~~v~W 34 (143)
T 3u6r_L 8 ATLSLSPGERATLSCRASQS-VNKYLAW 34 (143)
T ss_dssp SEEEECTTCCEEEEEEESSC-CTTCEEE
T ss_pred CEEEEeCCCCEEEEEEECCC-CceeeEE
Confidence 45789999999998765443 3456888
No 254
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=23.94 E-value=27 Score=16.29 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=9.9
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.|.+++||.|.|.
T Consensus 19 eLs~~~Gd~i~v~ 31 (60)
T 2x3w_D 19 ELSFKAGDELTKL 31 (60)
T ss_dssp BCCBCTTCEEEEC
T ss_pred cccCCCCCEEEEE
Confidence 4667899998774
No 255
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=23.82 E-value=26 Score=16.26 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=11.9
Q ss_pred ccEEEecCCEEEEEEE
Q psy88 3 YPKNVCEGDRVVVDVR 18 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~ 18 (75)
..|.+++||.|.|.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~ 32 (58)
T 1zx6_A 17 GDLGLKPGDKVQLLEK 32 (58)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCccCCCCCEEEEEEe
Confidence 3466789999888644
No 256
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=23.79 E-value=33 Score=18.01 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=10.2
Q ss_pred EEecCCEEEEEEE
Q psy88 6 NVCEGDRVVVDVR 18 (75)
Q Consensus 6 ~~~~Gd~v~i~~~ 18 (75)
.++.||.|+|.=.
T Consensus 49 ~~~~GD~V~I~e~ 61 (80)
T 3r8n_Q 49 ECGIGDVVEIREC 61 (80)
T ss_dssp CCCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEe
Confidence 5788999998644
No 257
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1
Probab=23.75 E-value=48 Score=17.24 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=19.1
Q ss_pred cccEEEecCCEEEEEEEeCCC-CCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMD-GLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~-~~~~~iH~ 30 (75)
+..+.+++|+.|.|.=.=... .....++|
T Consensus 6 p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W 35 (114)
T 1u9k_A 6 EERYDLVEGQTLTVKCPFNIMKYANSQKAW 35 (114)
T ss_dssp CEEEEECTTCCEEEEEECCHHHHTTSEEEE
T ss_pred CccEEEeCCCcEEEEeEecCcccCCceEEE
Confidence 456889999999997653211 01346888
No 258
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=23.72 E-value=41 Score=19.84 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.6
Q ss_pred EEecCCEEEEEEEeC
Q psy88 6 NVCEGDRVVVDVRNS 20 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~ 20 (75)
.++.||+|.|.+.-.
T Consensus 21 ~F~~GDtV~V~~~i~ 35 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVK 35 (146)
T ss_dssp CCCTTCEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEc
Confidence 578999999999853
No 259
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=23.67 E-value=86 Score=16.18 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=18.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.+++...=... ..-.+.|
T Consensus 20 p~~~~v~~G~~~~l~C~~~G~-P~p~v~W 47 (107)
T 3knb_B 20 PRPVRVVSGAEAELKCVVLGE-PPPVVVW 47 (107)
T ss_dssp CCCEEEETTSCEEEEEEEEEE-SCCEEEE
T ss_pred CCcEEEeCCCcEEEEEEEEEe-cCCEEEE
Confidence 346789999999887653322 2235666
No 260
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=23.63 E-value=27 Score=16.33 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=11.3
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (60)
T 1oot_A 19 DLPFRKGDVITILKK 33 (60)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred EeeEcCCCEEEEEEe
Confidence 466789999887644
No 261
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=23.50 E-value=37 Score=19.28 Aligned_cols=13 Identities=38% Similarity=0.291 Sum_probs=10.0
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.+.++.||+|.|.
T Consensus 40 ~~~IkkGD~V~Vi 52 (120)
T 1vq8_T 40 NVRVNAGDTVEVL 52 (120)
T ss_dssp EEECCTTCEEEEC
T ss_pred cccccCCCEEEEE
Confidence 3678889998874
No 262
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=23.42 E-value=78 Score=16.15 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=19.2
Q ss_pred ccEEEecCCEEEEEEEeCCCC---CCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG---LENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~---~~~~iH~ 30 (75)
..+.+++|+.|.+.=.-.... ....++|
T Consensus 9 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W 39 (111)
T 1j05_L 9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHW 39 (111)
T ss_dssp SEEECCTTSCEEEEEEESSCCEETTEECEEE
T ss_pred CEEEEeCCCCEEEEeecCCCcccCCCceEEE
Confidence 457899999999987744331 1356788
No 263
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=23.40 E-value=27 Score=16.17 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=10.8
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 17 eLs~~~Gd~i~v~~ 30 (58)
T 1uti_A 17 ELGFRSGEVVEVLD 30 (58)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CCCCCCCCEEEEEE
Confidence 56778999988753
No 264
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.38 E-value=47 Score=17.66 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=13.0
Q ss_pred EecCCEEEEEEEeCCC
Q psy88 7 VCEGDRVVVDVRNSMD 22 (75)
Q Consensus 7 ~~~Gd~v~i~~~N~~~ 22 (75)
++.||.|++.+.+-..
T Consensus 61 ~~~Gd~V~VkV~~vd~ 76 (103)
T 2eqs_A 61 VSKGQRVKVKVLSFTG 76 (103)
T ss_dssp CCTTCEEEEEEEEEET
T ss_pred eCCCCEEEEEEEEEEC
Confidence 5789999999987643
No 265
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=23.22 E-value=34 Score=20.57 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.6
Q ss_pred EEEecCCEEEEEEEeC
Q psy88 5 KNVCEGDRVVVDVRNS 20 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N~ 20 (75)
|.+..||.|++++...
T Consensus 55 ~~v~~GD~i~~tV~~~ 70 (173)
T 1y43_B 55 ITISEGDSIKVTVEAT 70 (173)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred ceeCCCCEEEEEEEEc
Confidence 5678899999888654
No 266
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=23.20 E-value=47 Score=18.02 Aligned_cols=16 Identities=38% Similarity=0.154 Sum_probs=13.0
Q ss_pred EEecCCEEEEEEEeCC
Q psy88 6 NVCEGDRVVVDVRNSM 21 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~ 21 (75)
.++.||.|++.+.+-.
T Consensus 75 ~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 75 VVNVGDVVEVMVLDID 90 (115)
T ss_dssp TCCTTCEEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEE
Confidence 4678999999998754
No 267
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=23.16 E-value=1.1e+02 Score=17.36 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=19.4
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.+.+.-.-... ....+.|
T Consensus 25 p~~~~v~~G~~v~L~C~~~~~-p~~~v~W 52 (218)
T 3k0w_A 25 PESKAVLAGQFVKLCCRATGH-PFVQYQW 52 (218)
T ss_dssp CCCEEEETTSBEEEECEETTT-TSSEEEE
T ss_pred CCCeEEeCCCcEEEEeeecCC-CCCEEEE
Confidence 456788999999988765443 3446666
No 268
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=23.13 E-value=23 Score=16.72 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=11.3
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 22 DLGFEKGEQLRILEQ 36 (62)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEc
Confidence 466789999888644
No 269
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=23.08 E-value=24 Score=16.45 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=10.5
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 16 eLs~~~Gd~i~v~~ 29 (58)
T 1jo8_A 16 ELTFVENDKIINIE 29 (58)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcccCCCCEEEEEE
Confidence 46678999987754
No 270
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=23.05 E-value=84 Score=17.77 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=22.7
Q ss_pred cEEEecCCEEEEEEEeCCCCCCceEEeCCccccC
Q psy88 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRG 37 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~ 37 (75)
.++|--||+|+|.. | . ....+-+.|++.+.
T Consensus 14 V~~V~DGDTi~v~~-~--g-~~~~VRL~gIDaPE 43 (143)
T 4eqp_A 14 LIKAIDGDTVKLMY-K--G-QPMTFRLLLVDTPE 43 (143)
T ss_dssp EEEECSSSEEEEEE-T--T-EEEEEEETTEECCC
T ss_pred EEEEECCCEEEEEe-C--C-cEEEEEEEeecCCC
Confidence 56788899999875 2 2 35689999998764
No 271
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=22.99 E-value=88 Score=16.06 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=19.0
Q ss_pred cccEEEecCCEEEEEEEeCCCC-CCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~ 30 (75)
+..+.+.+|+.|.+.=.=.... ....+.|
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W 36 (111)
T 2ywz_A 7 PRTITKETGESLTIKCVLKDHSCGLSSTTW 36 (111)
T ss_dssp CSEEEECTTCCEEEEEEEESCSSCCCEEEE
T ss_pred CCcEEEccCCCEEEEeEECCCCCCCCEEEE
Confidence 3468899999999965532210 2357888
No 272
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 3n02_A* 3n03_A* 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* ...
Probab=22.98 E-value=65 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=17.2
Q ss_pred cccCCCCEEEEEEc-C-CCeeeE
Q psy88 50 CPITQGNTFRYQFT-A-NAGTHF 70 (75)
Q Consensus 50 ~~i~pG~~~~y~~~-~-~~Gt~~ 70 (75)
..+.||+++++..+ . -.|.+|
T Consensus 29 ~~L~~G~s~~~~vp~~~wsGRiW 51 (206)
T 2vhk_A 29 RQLNSGESWTINVEPGTNGGKIW 51 (206)
T ss_dssp EEECTTCEEEEECCTTCCSEEEE
T ss_pred eecCCCCEEEEECCCCCccccee
Confidence 34889999999998 5 678777
No 273
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=22.98 E-value=33 Score=15.84 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=10.9
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (58)
T 2drm_A 19 ELTFKEGDTIIVHQK 33 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEe
Confidence 466789999877543
No 274
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=22.89 E-value=50 Score=21.53 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=14.6
Q ss_pred cccEEEecCCEEEEEEE
Q psy88 2 LYPKNVCEGDRVVVDVR 18 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~ 18 (75)
.+.++++.||+|++.-.
T Consensus 19 ~Pvl~V~~Gd~v~~et~ 35 (301)
T 2ii1_A 19 VPIASCQSGDTVIFETK 35 (301)
T ss_dssp CCSEEEETTEEEEEEEC
T ss_pred CceEEECCCCEEEEEEC
Confidence 46789999999999865
No 275
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=22.78 E-value=29 Score=16.14 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=10.7
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 17 eLs~~~Gd~i~v~~ 30 (58)
T 2bz8_A 17 ELTISVGEIITNIR 30 (58)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred EeeECCCCEEEEEE
Confidence 56778999987754
No 276
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.77 E-value=82 Score=15.59 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=18.9
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.+.+.-.- .. ....+.|
T Consensus 15 ~~~~~v~~G~~v~l~C~~-~~-p~~~v~W 41 (103)
T 2dku_A 15 LTNLQVEEKGTAVFTCKT-EH-PAATVTW 41 (103)
T ss_dssp CCCEEEETTSEEEEEEEC-SS-CCSCCEE
T ss_pred CCcEEEeCCCcEEEEEEe-CC-CCCeEEE
Confidence 356789999999998873 22 2336666
No 277
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=22.71 E-value=52 Score=16.86 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=19.0
Q ss_pred ccEEEecCCEEEEEEE-eCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVR-NSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~-N~~~~~~~~iH~ 30 (75)
..+.+++|+.|.+.=. -........++|
T Consensus 8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W 36 (109)
T 1pew_A 8 HSVSESPGKTVTISCTRSSGNIASNYVQW 36 (109)
T ss_dssp SEEEECTTSCEEEEEEESSSCGGGSCCEE
T ss_pred CCEEEcCCCCEEEEEEeCCCCCCCccEEE
Confidence 4678999999999876 332201356777
No 278
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=22.67 E-value=71 Score=18.56 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.8
Q ss_pred EecCCEEEEEEEeCC
Q psy88 7 VCEGDRVVVDVRNSM 21 (75)
Q Consensus 7 ~~~Gd~v~i~~~N~~ 21 (75)
++.||.|++.+.+-.
T Consensus 137 ~~~Gd~V~vkV~~vd 151 (171)
T 1y14_B 137 ITIKSRIRVKIEGCI 151 (171)
T ss_dssp ECTTCEEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEE
Confidence 788999999998754
No 279
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=22.57 E-value=59 Score=16.76 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=19.3
Q ss_pred ccEEEecCCEEEEEEEeCCC--CCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMD--GLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~--~~~~~iH~ 30 (75)
+.+.+++|+.|.|.=.=... .....++|
T Consensus 6 ~~~~~~~G~~v~L~C~~~~~~~~~~~~v~W 35 (116)
T 3bj9_1 6 PAMSSALGTTIRLTCTLRNDHDIGVYSVYW 35 (116)
T ss_dssp SEEEEETTCCEEEEEEECSSSCGGGCCEEE
T ss_pred CcEEEcCCCcEEEEEEeecCccCCCceEEE
Confidence 46899999999998764322 01356888
No 280
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=22.49 E-value=29 Score=16.27 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=11.5
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 22 ELSFKKGASLLLYHR 36 (60)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 467789999887654
No 281
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=22.47 E-value=1e+02 Score=16.52 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=20.1
Q ss_pred ccEEEecCCEEEEEEEeCCCC-CCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG-LENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~ 30 (75)
..+.+++|+.|.|.=.-.... ....++|
T Consensus 8 ~~v~v~~G~~vtL~C~~s~~~~~~~~v~W 36 (123)
T 3t0v_A 8 PSVSGTPGQKVTIFCSGSSSNVEDNSVYW 36 (123)
T ss_dssp CCEEECTTCCEEEEEECCTTTTTTSCEEE
T ss_pred CeEEEcCCCCEEEEEecCCCccCCCeEEE
Confidence 468899999999987654321 1357888
No 282
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=22.41 E-value=29 Score=15.99 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=10.1
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.|.+++||.|.|.
T Consensus 17 eLs~~~Gd~i~v~ 29 (57)
T 1cka_A 17 DLPFKKGDILRIR 29 (57)
T ss_dssp BCCBCTTCEEEEE
T ss_pred CCCCCCCCEEEEE
Confidence 4667899998775
No 283
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=22.32 E-value=30 Score=16.74 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=11.4
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 577899999877643
No 284
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=22.31 E-value=60 Score=19.62 Aligned_cols=16 Identities=0% Similarity=0.015 Sum_probs=13.2
Q ss_pred EEEecCCEEEEEEEeC
Q psy88 5 KNVCEGDRVVVDVRNS 20 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N~ 20 (75)
...+.||.|++++.+.
T Consensus 142 ~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 142 LYFDIDEEIRFQIESE 157 (203)
T ss_dssp EECCTTCEEEEEEEEE
T ss_pred cEEcCCCEEEEEEEEE
Confidence 4578899999999874
No 285
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.29 E-value=38 Score=19.21 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=9.9
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.+.++.||+|.|-
T Consensus 43 ~~~IkkGD~V~Vi 55 (121)
T 3j21_U 43 NLPVRVGDKVRIM 55 (121)
T ss_dssp EEECCSSSEEEEC
T ss_pred ccccccCCEEEEe
Confidence 3678899998774
No 286
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=22.25 E-value=95 Score=16.15 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=19.3
Q ss_pred ccEEEecCCEEEEEEEeCCCC--CCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDG--LENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~--~~~~iH~ 30 (75)
+.+.+++|+.|.+.=.=.... ....++|
T Consensus 8 ~~~~~~~G~~v~L~C~~~~~~~~~~~~v~W 37 (120)
T 1oaq_L 8 SALTTSPGETVTLTCRSSTGAVTTSNYANW 37 (120)
T ss_dssp SEEEECTTCEEEEEEEETTBCCCGGGCCEE
T ss_pred CcEEEcCCCCEEEEEEeCCCccCCCCEEEE
Confidence 348899999999987644321 1356777
No 287
>1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP: b.25.1.1
Probab=22.23 E-value=69 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.0
Q ss_pred ccCCCCEEEEEEc-C-CCeeeEE
Q psy88 51 PITQGNTFRYQFT-A-NAGTHFW 71 (75)
Q Consensus 51 ~i~pG~~~~y~~~-~-~~Gt~~Y 71 (75)
.+.||+++++..+ . -.|.+|=
T Consensus 25 ~L~~G~s~s~~vp~~~wsGRiWg 47 (206)
T 1du5_A 25 QLNRGESWRITAPAGTTAARIWA 47 (206)
T ss_dssp EECTTCEEEEECCTTCCSEEEEE
T ss_pred ecCCCCeEEEECCCCCcccceec
Confidence 4889999999988 5 6677773
No 288
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=22.12 E-value=30 Score=15.89 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=11.3
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (58)
T 4e6r_A 17 ELSLVXGSRVTVMEX 31 (58)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred EeeEeCCCEEEEeEc
Confidence 467889999887644
No 289
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=22.11 E-value=83 Score=15.44 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=19.9
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+.+|+.+.+.-.=... ....+.|
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~-~~~~v~W 40 (108)
T 3m45_A 14 QNVTVVEGGTAILTCRVDQN-DNTSLQW 40 (108)
T ss_dssp CCEEEETTSCEEEEEEESSC-SSCCEEE
T ss_pred CeeEEEeCCcEEEEeEEcCC-CccEEEE
Confidence 46789999999988765554 3456777
No 290
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.10 E-value=29 Score=16.37 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=11.7
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 21 eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 21 DLEFQEGDIILVLSK 35 (62)
T ss_dssp BCCBCSSCEEEEEEE
T ss_pred CccCCCCCEEEEEEe
Confidence 466789999888755
No 291
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=22.06 E-value=25 Score=16.63 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=10.7
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 21 eLs~~~Gd~i~v~~ 34 (62)
T 1uj0_A 21 ELTFKHGELITVLD 34 (62)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcCCCCCCEEEEEE
Confidence 46678999988763
No 292
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=22.06 E-value=30 Score=15.97 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=11.0
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 18 eLs~~~Gd~i~v~~~ 32 (58)
T 1sem_A 18 ELAFKRGDVITLINK 32 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEe
Confidence 466789999877543
No 293
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=21.93 E-value=27 Score=18.28 Aligned_cols=10 Identities=50% Similarity=0.624 Sum_probs=7.9
Q ss_pred EecCCEEEEE
Q psy88 7 VCEGDRVVVD 16 (75)
Q Consensus 7 ~~~Gd~v~i~ 16 (75)
++.||+|+|.
T Consensus 1 mk~GdrVrV~ 10 (75)
T 1dj7_B 1 MNVGDRVRVT 10 (75)
T ss_dssp CCTTCEEEEC
T ss_pred CCCCCEEEEc
Confidence 3689999985
No 294
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=21.91 E-value=52 Score=21.48 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=13.2
Q ss_pred cccEEEecCCEEEEEEEe
Q psy88 2 LYPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N 19 (75)
++.++++.||+|++.-..
T Consensus 30 ~Pvl~V~~Gd~V~~eT~d 47 (297)
T 2f4l_A 30 APVEEVYPGEQVVFETLD 47 (297)
T ss_dssp CCSCEECTTCEEEEEECC
T ss_pred CceEEECCCCEEEEEECc
Confidence 456788888888887553
No 295
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=21.88 E-value=31 Score=16.33 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=11.2
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 22 ELTFREGEIIHLISK 36 (64)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred ccCCCCCCEEEEEEC
Confidence 466789999887643
No 296
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=21.88 E-value=1.2e+02 Score=17.08 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=18.8
Q ss_pred ccEEEecCCEEEEEEE--eCCCCCCceEEeC
Q psy88 3 YPKNVCEGDRVVVDVR--NSMDGLENTIHWH 31 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~--N~~~~~~~~iH~H 31 (75)
..+.+++|+.|.|.=. .... ....|+|-
T Consensus 11 ~~v~v~~G~sVtL~C~~s~~~~-~~~~v~Wy 40 (149)
T 3u6r_H 11 GAEVKKPGSSVKVSCQVFGDTF-SRYTIQWL 40 (149)
T ss_dssp CCEEECTTCCEEEEEEEEESCC-CTTTEEEE
T ss_pred CCEEEcCCCCEEEEeEeeCCCc-CCceEEEE
Confidence 4678999999999755 2211 24568883
No 297
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.85 E-value=52 Score=17.90 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=13.7
Q ss_pred EEecCCEEEEEEEeCCC
Q psy88 6 NVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~~ 22 (75)
.++.||.|++.+.+-..
T Consensus 67 ~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 67 KLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp CCCTTCEEEEEEEECCT
T ss_pred EeCCCCEEEEEEEEEeC
Confidence 36789999999998653
No 298
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=21.81 E-value=61 Score=22.68 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=14.7
Q ss_pred cccEEEecCCEEEEEEE
Q psy88 2 LYPKNVCEGDRVVVDVR 18 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~ 18 (75)
++.++++.||+|+|.-.
T Consensus 93 ~PvltV~sGd~V~ieT~ 109 (484)
T 3b9t_A 93 KPVVELESGDFATIETL 109 (484)
T ss_dssp CCSEEECTTCEEEEEEC
T ss_pred CceEEECCCCEEEEEEe
Confidence 56889999999999865
No 299
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=21.79 E-value=35 Score=15.91 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=12.3
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
..|.+++||.|.|.-..
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 20 DELSFNANDIIDIIKED 36 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 35677899998886543
No 300
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=21.76 E-value=31 Score=16.27 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=10.5
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.|.+++||.|.|.
T Consensus 19 eLs~~~Gd~i~v~ 31 (62)
T 2fpe_A 19 ELELEVDDPLLVE 31 (62)
T ss_dssp BCCBCTTCEEEEE
T ss_pred cCcCCCCCEEEEE
Confidence 4667899999885
No 301
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=21.73 E-value=1.1e+02 Score=16.91 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=20.3
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEeC
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWH 31 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~H 31 (75)
..+.+++|+.|.|.=.-........++|-
T Consensus 9 ~~~~v~~G~svtL~C~~s~~~~~~~v~Wy 37 (150)
T 3dmm_D 9 SSLLVQTNHTAKMSCEVKSISKLTSIYWL 37 (150)
T ss_dssp SEEEEETTSCEEEEEECCCSSCCCEEEEE
T ss_pred CeEEEeCCCcEEEEEEecCCCCCceEEEE
Confidence 45789999999998765432135678883
No 302
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=21.61 E-value=42 Score=19.27 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=10.0
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.+.++.||+|.|-
T Consensus 47 s~~IkkgD~V~Vi 59 (127)
T 3u5e_Y 47 ALPIRRDDEVLVV 59 (127)
T ss_dssp EEECCTTCEEEEC
T ss_pred cccccCCCEEEEe
Confidence 3678899998774
No 303
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=21.60 E-value=50 Score=19.31 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.2
Q ss_pred EEecCCEEEEEEEeCC
Q psy88 6 NVCEGDRVVVDVRNSM 21 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~ 21 (75)
.++.||.|++++.+-.
T Consensus 135 ~~~~Gd~VrvkV~~v~ 150 (180)
T 4ayb_E 135 VIQKGDKVRARVISVA 150 (180)
T ss_dssp CCCTTCEEEEEEEEEC
T ss_pred EECCCCEEEEEEEEEe
Confidence 3688999999998754
No 304
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=21.55 E-value=68 Score=16.47 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=17.8
Q ss_pred ccEEEecCCEEEEEEEeCC-CCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSM-DGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~-~~~~~~iH~ 30 (75)
..+.+.+|+.+.+.-.=.. +.....+.|
T Consensus 16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W 44 (122)
T 3s35_X 16 HGIELSVGEKLVLNCTARTELNVGIDFNW 44 (122)
T ss_dssp SCEEEEETCCEEEEEEEEECTTCCCEEEE
T ss_pred CCEEEecCCeEEEEEEEEcCCCCcEEEEE
Confidence 3468899999988765332 112356777
No 305
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=21.55 E-value=26 Score=16.96 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.5
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.|.+++||.|.|.
T Consensus 17 eLs~~~Gd~i~v~ 29 (65)
T 2nwm_A 17 ELTLQKGDIVYIH 29 (65)
T ss_dssp BCCBCTTCEEEEE
T ss_pred ccCCcCCCEEEEE
Confidence 4678899998875
No 306
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=21.53 E-value=36 Score=15.74 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=11.2
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 19 ELYFEEGDIIYITDM 33 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CccCCCCCEEEEEEe
Confidence 566789999887643
No 307
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=21.44 E-value=54 Score=17.51 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.3
Q ss_pred EEecCCEEEEEEEeCCC
Q psy88 6 NVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~~~ 22 (75)
.++.||.|++.+.+-..
T Consensus 75 ~~~vGd~V~v~V~~vd~ 91 (109)
T 2khj_A 75 VLSVGDEVEAKFTGVDR 91 (109)
T ss_dssp SCCTTCEEEEEEEEEET
T ss_pred ccCCCCEEEEEEEEEEC
Confidence 36789999999987543
No 308
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=21.41 E-value=96 Score=15.90 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=20.1
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+++|+.|.|.=.-........++|
T Consensus 5 p~~~~~~~G~~vtL~C~~~~~~~~~~v~W 33 (115)
T 2atp_B 5 PSSLLVQTNHTAKMSCEVKSISKLTSIYW 33 (115)
T ss_dssp CSEEEECTTSCEEEEEECCSSCCSSEEEE
T ss_pred CCCEEEcCCCcEEEEEEecCCCCcccEEE
Confidence 34678999999999876443212457888
No 309
>2f0c_A Phage TP901-1 ORF49 (BPP); beta-barrel, beta prism, 3 helix parallel bundle, virus-VIRA complex; 1.65A {Lactococcus phage tp901-1} SCOP: b.21.1.3 b.108.1.4 PDB: 3ejc_A 3hg0_A
Probab=21.39 E-value=1.5e+02 Score=18.17 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=11.1
Q ss_pred ecCCEEEEEEEeCC
Q psy88 8 CEGDRVVVDVRNSM 21 (75)
Q Consensus 8 ~~Gd~v~i~~~N~~ 21 (75)
|+||.|.|++.-..
T Consensus 109 KkGD~V~V~f~Gev 122 (191)
T 2f0c_A 109 KKGTTVEYSIGGEI 122 (191)
T ss_dssp EETTEEEEEEEECC
T ss_pred EeCCEEEEEEEeEE
Confidence 55999999996554
No 310
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=21.36 E-value=1.1e+02 Score=16.43 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=21.5
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEeC
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWH 31 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~H 31 (75)
+..+.+.+|+.+.+.-.=... ....+.|-
T Consensus 45 p~~~~v~~G~~v~L~C~~~~~-~~~~i~W~ 73 (145)
T 1z9m_A 45 TSDETVVAGGTVVLKCQVKDH-EDSSLQWS 73 (145)
T ss_dssp CCCEEEETTSCEEEEEECSCC-TTCCEEEE
T ss_pred CceEEEEcCCCEEEEEEEcCC-CCcEEEEE
Confidence 346889999999998875544 34678884
No 311
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=21.36 E-value=97 Score=15.94 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=18.4
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|.+.=.-........+.|
T Consensus 14 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W 42 (120)
T 2yz1_A 14 EKSVSVAAGDSTVLNCTLTSLLPVGPIKW 42 (120)
T ss_dssp SSEEEECTTCCEEECCEESCCCSCCCEEE
T ss_pred CceEEEeCCCCEEEEeEECCCCCCcEEEE
Confidence 35688999999998654332201246777
No 312
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=21.34 E-value=27 Score=17.20 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=11.3
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.=.
T Consensus 22 ELs~~~Gd~i~v~~~ 36 (65)
T 2lj0_A 22 ELELRDGDIVDVMEK 36 (65)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEeEe
Confidence 467899999887533
No 313
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=21.32 E-value=85 Score=15.93 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=19.7
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|.+.=.=........+.|
T Consensus 3 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W 31 (110)
T 2q87_A 3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYW 31 (110)
T ss_dssp EEEEEECTTSCEEEEEECCGGGTTSEEEE
T ss_pred CcEEEEeCCCcEEEEeEecCCcCCceEEE
Confidence 35688999999999876332212357888
No 314
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=21.22 E-value=32 Score=15.86 Aligned_cols=14 Identities=21% Similarity=0.069 Sum_probs=10.6
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 18 eLs~~~Gd~i~v~~ 31 (58)
T 2vwf_A 18 ELGFRRGDFIHVMD 31 (58)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcCCCCCCEEEEEE
Confidence 46678999988753
No 315
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.18 E-value=51 Score=17.12 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=17.2
Q ss_pred ccEEEecCCEEEEEEEeCCC
Q psy88 3 YPKNVCEGDRVVVDVRNSMD 22 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~ 22 (75)
..|-+.+|+.|.|.-.|+..
T Consensus 22 ~eI~v~~ge~Vqila~nqqn 41 (74)
T 1wfw_A 22 NEICVSQGEVVQVLAVNQQN 41 (74)
T ss_dssp SCCCBCTTCEEEEEEECTTS
T ss_pred ceeccccCcEEEEEEecCcc
Confidence 35778899999999999976
No 316
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=21.10 E-value=37 Score=15.88 Aligned_cols=15 Identities=0% Similarity=-0.137 Sum_probs=11.0
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (61)
T 1y0m_A 19 ELTFTKSAIIQNVEK 33 (61)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCcCCCEEEEEEe
Confidence 466789999887543
No 317
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Probab=21.08 E-value=63 Score=16.91 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=19.0
Q ss_pred cccEEEecCCEEEEEEEeCC-CCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSM-DGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~-~~~~~~iH~ 30 (75)
+..+.+++|+.|.|.=.=.. ......++|
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W 36 (120)
T 1mfa_H 7 SGTVVARPGASVKMSCKASGYTFTNYWMHW 36 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred CCCEEEeCCCCEEEEEEeeCccccccEEEE
Confidence 34678999999999765321 102356888
No 318
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=21.07 E-value=25 Score=16.28 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=10.5
Q ss_pred cEEEecCCEEEEEE
Q psy88 4 PKNVCEGDRVVVDV 17 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~ 17 (75)
.|.+++||.|.|.-
T Consensus 17 eLs~~~Gd~i~v~~ 30 (58)
T 1zuu_A 17 EITITPGDKISLVA 30 (58)
T ss_dssp BCCBCTTCCEEEEE
T ss_pred cccCCCCCEEEEeE
Confidence 56678999988764
No 319
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=21.01 E-value=32 Score=16.56 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=12.4
Q ss_pred ccEEEecCCEEEEEEEe
Q psy88 3 YPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N 19 (75)
..|.+++||.|.|.-..
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (70)
T 2cuc_A 22 EELDLQKGEGIRVLGKY 38 (70)
T ss_dssp TBCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCCEEEEEEec
Confidence 35678899998887543
No 320
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=21.01 E-value=37 Score=16.02 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=10.3
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.|.+++||.|.|.
T Consensus 22 eLs~~~Gd~i~v~ 34 (64)
T 2ak5_A 22 ELSFSKGDVIHVT 34 (64)
T ss_dssp BCCBCTTCEEEEE
T ss_pred cccCCCCCEEEEe
Confidence 5667899998875
No 321
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=20.96 E-value=66 Score=21.97 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=14.6
Q ss_pred cccEEEecCCEEEEEEE
Q psy88 2 LYPKNVCEGDRVVVDVR 18 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~ 18 (75)
++.++++.||+|+|.-.
T Consensus 29 ~Pvl~V~sGd~v~iet~ 45 (409)
T 2wkn_A 29 PMAVWVEPGAEFKLETY 45 (409)
T ss_dssp CCSEEECTTCEEEEEEC
T ss_pred CceEEECCCCEEEEEEE
Confidence 46789999999999865
No 322
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=20.96 E-value=1e+02 Score=15.93 Aligned_cols=29 Identities=3% Similarity=-0.255 Sum_probs=19.0
Q ss_pred cccEEEecCCEEEEEEEeCCCCCC--ceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLE--NTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~--~~iH~ 30 (75)
+..+.+++|+.|++.=.-...... ..|+|
T Consensus 6 p~~~~~~~G~~v~L~C~~~~~~~~~~~~v~W 36 (117)
T 1dqt_A 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTV 36 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEE
T ss_pred CceEEEeCCCeEEEEEEeeCCCCCCccEEEE
Confidence 356789999999998664311022 46888
No 323
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=20.92 E-value=39 Score=17.32 Aligned_cols=15 Identities=7% Similarity=0.370 Sum_probs=12.0
Q ss_pred EEecCCEEEEEEEeC
Q psy88 6 NVCEGDRVVVDVRNS 20 (75)
Q Consensus 6 ~~~~Gd~v~i~~~N~ 20 (75)
-+++||.+++.+.+.
T Consensus 38 gIk~gD~fel~ve~k 52 (68)
T 3o27_A 38 DIKPDDTFILNMEQK 52 (68)
T ss_dssp TCCTTCCEEEEEEEE
T ss_pred CCCCCCEEEEEEecC
Confidence 357899999999754
No 324
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=20.86 E-value=33 Score=16.26 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=11.8
Q ss_pred cEEEecCCEEEEEEEe
Q psy88 4 PKNVCEGDRVVVDVRN 19 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~N 19 (75)
.|.+++||.|.|.-..
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 23 DLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CCCBCTTCEEEEEEEC
T ss_pred cCCCCCCCEEEEEEcC
Confidence 4667899998886544
No 325
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=20.83 E-value=1.3e+02 Score=17.30 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=20.5
Q ss_pred ccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
..+.+.+|+.|.+.-.-... ....+.|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~-~~~~v~W 35 (246)
T 4dzb_B 9 SWVISKSGTSVKIECRSLDF-QATTMFW 35 (246)
T ss_dssp SEEEEETTSCEEEEEEESSS-CCCSEEE
T ss_pred cEEEEeCCCcEEEEeEecCC-CceEEEE
Confidence 45789999999998865544 4567888
No 326
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=20.82 E-value=62 Score=17.16 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=18.8
Q ss_pred ccEEEecCCEEEEEEEeCC-CCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSM-DGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~-~~~~~~iH~ 30 (75)
..+.+++|+.|.|.=.=.. ......++|
T Consensus 10 ~~~~v~~G~~vtL~C~~s~~~~~~~~v~W 38 (121)
T 2xt1_B 10 GGGLVQAGGSLRLSCAASGSFFMSNVMAW 38 (121)
T ss_dssp CCEEEETTCCEEEEEEEESSSCCCSEEEE
T ss_pred CCEEEeCCCCEEEEEEecCeeccCceEEE
Confidence 4688999999999765321 102456888
No 327
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=20.78 E-value=33 Score=16.46 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=10.4
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.|.+++||.|.|.
T Consensus 23 eLs~~~Gd~i~v~ 35 (68)
T 2dl3_A 23 ELPLQKGDIVYIY 35 (68)
T ss_dssp BCCBCTTCEEEEE
T ss_pred CccCCCCCEEEEe
Confidence 5678899998875
No 328
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=20.70 E-value=23 Score=16.91 Aligned_cols=11 Identities=45% Similarity=0.483 Sum_probs=7.5
Q ss_pred EEecCCEEEEE
Q psy88 6 NVCEGDRVVVD 16 (75)
Q Consensus 6 ~~~~Gd~v~i~ 16 (75)
.++.||+|+|.
T Consensus 4 ~~~~Gd~V~V~ 14 (58)
T 1nz9_A 4 AFREGDQVRVV 14 (58)
T ss_dssp SCCTTCEEEEC
T ss_pred ccCCCCEEEEe
Confidence 35678887774
No 329
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=20.70 E-value=65 Score=16.81 Aligned_cols=28 Identities=18% Similarity=0.378 Sum_probs=18.6
Q ss_pred ccEEEecCCEEEEEEEeCC-CCCCceEEe
Q psy88 3 YPKNVCEGDRVVVDVRNSM-DGLENTIHW 30 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~N~~-~~~~~~iH~ 30 (75)
..+.+++|+.|.|.=.-.. ......++|
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~~~~~~~v~W 36 (120)
T 1n4x_H 8 GPELKKPGETVKISCKATNYAFTDYSMHW 36 (120)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred CCEEEcCCCeEEEEEEecCcccCCcEEEE
Confidence 4588999999999765332 101356788
No 330
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.66 E-value=36 Score=16.52 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=8.1
Q ss_pred EEecCCEEEEE
Q psy88 6 NVCEGDRVVVD 16 (75)
Q Consensus 6 ~~~~Gd~v~i~ 16 (75)
.++.||.|+|.
T Consensus 7 ~f~~GD~V~V~ 17 (59)
T 2e6z_A 7 GFQPGDNVEVC 17 (59)
T ss_dssp SCCTTSEEEEC
T ss_pred cCCCCCEEEEe
Confidence 45788888874
No 331
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=20.61 E-value=1e+02 Score=15.80 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=20.2
Q ss_pred cccEEEecCCEEEEEEEeCCCC----CCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG----LENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~ 30 (75)
+..+.+++|+.|.|.=.=.... ....++|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W 40 (113)
T 1dlf_L 8 PLSLPVSLGNQASISCRSSQSLVHSNGNTYLHW 40 (113)
T ss_dssp CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEE
T ss_pred CCEEEEcCCCCEEEEEEccccccccCCCceEEE
Confidence 3468899999999987754321 1367888
No 332
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=20.56 E-value=28 Score=16.43 Aligned_cols=15 Identities=7% Similarity=0.020 Sum_probs=11.7
Q ss_pred cEEEecCCEEEEEEE
Q psy88 4 PKNVCEGDRVVVDVR 18 (75)
Q Consensus 4 ~i~~~~Gd~v~i~~~ 18 (75)
.|.+++||.|.|.-.
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKK 31 (62)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCcCCCEEEEEEe
Confidence 467789999888755
No 333
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=20.54 E-value=74 Score=16.79 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.4
Q ss_pred cccEEEecCCEEEEEEEe
Q psy88 2 LYPKNVCEGDRVVVDVRN 19 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N 19 (75)
+..+.+++|+.|.|.=.=
T Consensus 7 p~~v~~~~G~~vtL~C~~ 24 (117)
T 1xed_A 7 PEEVNSVEGNSVSITCYY 24 (117)
T ss_dssp CSEEEEETTCCEEEEEEC
T ss_pred CCeEEEecCCCEEEEeEe
Confidence 456889999999998763
No 334
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=20.50 E-value=45 Score=19.34 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=9.9
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.+.++.||+|.|-
T Consensus 46 s~~IkkgD~V~Vi 58 (135)
T 4a17_S 46 SMPVRKDDEVLIV 58 (135)
T ss_dssp EEECCTTCEEEEC
T ss_pred cccccCCCEEEEe
Confidence 4678899998764
No 335
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=20.46 E-value=83 Score=18.42 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=13.8
Q ss_pred EEEecCCEEEEEEEeCC
Q psy88 5 KNVCEGDRVVVDVRNSM 21 (75)
Q Consensus 5 i~~~~Gd~v~i~~~N~~ 21 (75)
-.++.||.|++.+..-.
T Consensus 134 ~~~~~Gd~V~vkV~~vd 150 (187)
T 1go3_E 134 KVLEIGDYVRARIVAIS 150 (187)
T ss_dssp CEECTTCEEEEEEEEEE
T ss_pred eEEcCCCEEEEEEEEEE
Confidence 45889999999998753
No 336
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}
Probab=20.24 E-value=58 Score=17.01 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=18.2
Q ss_pred cccEEEecCCEEEEEEEeCCCCCCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~ 30 (75)
+..+.+.+|+.|.|.=.=........++|
T Consensus 4 p~~v~~~~G~svtl~C~~s~~~~~~~~~W 32 (106)
T 2frg_P 4 PEVLQAPVGSSILVQCHYRLQDVKAQKVW 32 (106)
T ss_dssp CEEEEECTTCCEEEEEECCGGGTTSEEEE
T ss_pred CcEEEEecCCcEEEEeEecCCcccCcEEE
Confidence 45678899999999865322112234666
No 337
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=20.13 E-value=29 Score=16.64 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=10.0
Q ss_pred cEEEecCCEEEEE
Q psy88 4 PKNVCEGDRVVVD 16 (75)
Q Consensus 4 ~i~~~~Gd~v~i~ 16 (75)
.|.+++||.|.|.
T Consensus 23 eLs~~~Gd~i~v~ 35 (67)
T 2kxc_A 23 LLSFAQGDVITLL 35 (67)
T ss_dssp BCCBCTTCEEEES
T ss_pred CCcCCCCCEEEEe
Confidence 4667899998874
No 338
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=20.07 E-value=1e+02 Score=15.77 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=19.8
Q ss_pred cccEEEecCCEEEEEEEeCCCC-----CCceEEe
Q psy88 2 LYPKNVCEGDRVVVDVRNSMDG-----LENTIHW 30 (75)
Q Consensus 2 ~~~i~~~~Gd~v~i~~~N~~~~-----~~~~iH~ 30 (75)
+..+.+++|+.|.+.=.=.... ....++|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W 41 (114)
T 1eeq_A 8 PDSLAVSLGERATINCKSSQSVLDSSNSKNYLAW 41 (114)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTTTEECEEE
T ss_pred CCeEEEcCCCeEEEEEEcCCCccccccCCccEEE
Confidence 3468899999999987644321 1256888
No 339
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=20.04 E-value=29 Score=17.24 Aligned_cols=16 Identities=19% Similarity=-0.002 Sum_probs=11.9
Q ss_pred ccEEEecCCEEEEEEE
Q psy88 3 YPKNVCEGDRVVVDVR 18 (75)
Q Consensus 3 ~~i~~~~Gd~v~i~~~ 18 (75)
..|.+++||.|.|.-.
T Consensus 33 ~eLsf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKA 48 (78)
T ss_dssp CCCCBCTTCEEEEEEC
T ss_pred CccCCCCCCEEEEEEc
Confidence 4567899999887644
Done!