RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy88
(75 letters)
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry
contains many divergent copper oxidase-like domains
that are not recognised by the pfam00394 model.
Length = 119
Score = 95.8 bits (239), Expect = 1e-27
Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
V EGD VVV+V N++D TIHWHG+ Q GT ++DGVP VTQCPI G +F Y+FT
Sbjct: 29 RVREGDTVVVNVTNNLD-EPTTIHWHGLRQPGTPWADGVPGVTQCPIPPGESFTYRFTVK 87
Query: 66 --AGTHFWHAHT 75
AGT+++H+HT
Sbjct: 88 QQAGTYWYHSHT 99
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 84.8 bits (210), Expect = 3e-21
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAG 67
GD +VV++ N + IHWHGI Q GT ++DG VTQC I G TF Y F G
Sbjct: 38 AGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPG 97
Query: 68 THFWHAH 74
T+F+H H
Sbjct: 98 TYFYHGH 104
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 77.6 bits (191), Expect = 1e-18
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AG 67
+GD V+V+++NS+ IHWHGI Q GT + DG VTQCPI G TF Y+F + G
Sbjct: 61 QGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPG 120
Query: 68 THFWHAH 74
T+ +HAH
Sbjct: 121 TYLYHAH 127
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 76.2 bits (187), Expect = 3e-18
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AGT 68
GD +VV + N + IHWHGI Q+G+ ++DG VTQC I G TF Y+FT GT
Sbjct: 61 GDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGT 120
Query: 69 HFWHAH 74
HF+H H
Sbjct: 121 HFYHGH 126
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 74.4 bits (183), Expect = 2e-17
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 9 EGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--AN 65
EGD V+V+V N++ N TIHWHG+ Q ++DG ++TQCPI G ++ Y FT
Sbjct: 40 EGDTVIVNVTNNVQ--YNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQ 97
Query: 66 AGTHFWHAH 74
GT +WHAH
Sbjct: 98 RGTLWWHAH 106
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 59.1 bits (143), Expect = 3e-12
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT---AN 65
EG + V N + T+HWHG+ QR +SDG P +Q PI G+ F Y+ +
Sbjct: 45 EGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGD 104
Query: 66 AGTHFWHAH 74
AG++F+H+H
Sbjct: 105 AGSYFYHSH 113
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 54.8 bits (132), Expect = 1e-10
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AG 67
+GD V +D+ N + + ++HWHG+ G DGVP +TQ P G T Y FT + G
Sbjct: 70 KGDTVTLDLTNRLLV-DTSVHWHGLPVPGEM--DGVPPLTQIPPGPGETPTYTFTQDVPG 126
Query: 68 THFWHAHT 75
T+++H HT
Sbjct: 127 TYWYHPHT 134
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 50.3 bits (120), Expect = 6e-09
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAG 67
EGD V + V N++ + +IHWHGI DGVP V+ I G TF Y+F +G
Sbjct: 82 EGDTVRLRVTNTLP-EDTSIHWHGILLPFQM--DGVPGVSFAGIAPGETFTYRFPVRQSG 138
Query: 68 THFWHAHT 75
T+++H+H+
Sbjct: 139 TYWYHSHS 146
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 42.7 bits (101), Expect = 2e-06
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN--AG 67
G V VD+ N + E T+HWHG+ G DG P Q I G FT + A
Sbjct: 84 GKAVTVDITNQLPE-ETTLHWHGLEVPGEV--DGGP---QGIIAPGGKRTVTFTVDQPAA 137
Query: 68 THFWHAHT 75
T ++H H
Sbjct: 138 TCWFHPHQ 145
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 42.5 bits (100), Expect = 3e-06
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
N + +V++V N++D + W GI QR + DGVP T CPI G F Y F
Sbjct: 61 NSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHF 115
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 42.0 bits (98), Expect = 5e-06
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63
NV +VV+VRN++D + WHG+ QR + + DGV T C I G + YQF
Sbjct: 61 ALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGV-GGTNCAIPAGWNWTYQFQ 118
Query: 64 A--NAGTHFWHAHT 75
G+ F+ T
Sbjct: 119 VKDQVGSFFYAPST 132
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 41.5 bits (97), Expect = 6e-06
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 11 DRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA--NAGT 68
D +V++V N +D + W+G+H R Y DGV + T CPI G + Y F G+
Sbjct: 55 DNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGV-YGTTCPIPPGKNYTYDFQVKDQVGS 112
Query: 69 HFW 71
+F+
Sbjct: 113 YFY 115
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 35.3 bits (81), Expect = 0.001
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
+V D +++++ N +D + W+GI QR + DGV T CPI + + Y+F
Sbjct: 63 DVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKF 117
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 32.3 bits (73), Expect = 0.010
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGN--TFRYQFT 63
N D + V++ N++ + W+G+ R + DGV T CPI G T+R+Q
Sbjct: 60 NATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVR-GTNCPILPGTNWTYRFQVK 117
Query: 64 ANAGTHFW 71
G++F+
Sbjct: 118 DQIGSYFY 125
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 32.3 bits (73), Expect = 0.011
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 11 DRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRY 60
D ++++V N +D I W GI Y DGV + T CPI G + Y
Sbjct: 67 DNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGV-YGTTCPIPPGKNYTY 114
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 27.5 bits (61), Expect = 0.52
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 4 PKNVCEGDRVVVDVRNSMDGLENTI 28
P+N CE D V + + NSM L +I
Sbjct: 265 PRNDCEKDAVTIALVNSMTSLYASI 289
>gnl|CDD|237309 PRK13211, PRK13211, N-acetylglucosamine-binding protein A;
Reviewed.
Length = 478
Score = 26.9 bits (60), Expect = 1.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 51 PITQG-NTFRYQFTANAGTHFW 71
PI G NTF + FTAN T W
Sbjct: 97 PIKAGPNTFEWTFTANHVTRNW 118
>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 26.0 bits (58), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 6 NVCEGDRVVVDVRNS 20
NVCEGD V +D NS
Sbjct: 289 NVCEGDVVTIDTENS 303
>gnl|CDD|225932 COG3397, COG3397, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 25.2 bits (55), Expect = 3.3
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 51 PITQGN-TFRYQFTANAGTHFWH 72
PIT G TF ++ TA T +W
Sbjct: 110 PITSGPQTFVWKATAPHNTAYWK 132
>gnl|CDD|234404 TIGR03931, T7SS_Rv3446c, type VII secretion-associated protein,
Rv3446c family, C-terminal domain. Members of this
protein family occur as part of the ESX-4 cluster of
type VII secretion system (T7SS) proteins in
Mycobacterium tuberculosis and in similar T7SS clusters
in other Actinobacteria genera, including
Corynebacterium, Nocardia, Rhodococcus, and
Saccharopolyspora. This model describes the
better-conserved C-terminal region [Protein fate,
Protein and peptide secretion and trafficking].
Length = 172
Score = 24.4 bits (53), Expect = 6.4
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG 43
G VV DG +T+ WH G Q S G
Sbjct: 116 GRPVVTYRETPGDG--STVLWHVWVDDGHQVSVG 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.466
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,629,986
Number of extensions: 255917
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 21
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)