RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy88
(75 letters)
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 120 bits (302), Expect = 5e-34
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
GD VVV++ N + IHWHGI QRGT ++DG ++QC I G TF Y FT +
Sbjct: 37 RANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVD 96
Query: 66 -AGTHFWHAHT 75
GT F+H H
Sbjct: 97 NPGTFFYHGHL 107
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 115 bits (289), Expect = 3e-32
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
V +GDRV + + N M+ ++H+HG+ Q GT DGVPF+TQCPI G+T Y FT +
Sbjct: 37 TVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVD 96
Query: 66 --AGTHFWHAHT 75
GT+++H+HT
Sbjct: 97 YNVGTYWYHSHT 108
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 110 bits (276), Expect = 2e-31
Identities = 36/71 (50%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 7 VCEGDRVVVDVRNSMDGLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
V EGD V V+V N IHWHG+ QRGT SDGVP TQ I G+TF Y+F A
Sbjct: 38 VMEGDDVTVNVTNMTT--LPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAE 95
Query: 66 -AGTHFWHAHT 75
AGT ++H H
Sbjct: 96 PAGTMWYHCHV 106
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 111 bits (279), Expect = 6e-31
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 7 VCEGDRVVVDVRNSMDGLEN----TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
GD + N + +IHWHG Q+GT ++DG F+TQCPI GN+F Y F
Sbjct: 39 GNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNF 98
Query: 63 TA--NAGTHFWHAHT 75
AGT+++H+H
Sbjct: 99 NVPGMAGTYWYHSHL 113
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 110 bits (278), Expect = 7e-31
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 7 VCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
GDR ++V +++ L++T IHWHG Q GT ++DG F+ QCPI+ G++F Y F
Sbjct: 38 GNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63 TAN--AGTHFWHAHT 75
AGT ++H+H
Sbjct: 98 QVPDQAGTFWYHSHL 112
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 109 bits (275), Expect = 2e-30
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 7 VCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
DR ++V + + T IHWHG Q GT DG FV QCPI +F Y F
Sbjct: 59 GNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF 118
Query: 63 TAN--AGTHFWHAHT 75
AGT+++H+H
Sbjct: 119 VVPGQAGTYWYHSHL 133
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 109 bits (275), Expect = 3e-30
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
GD +++ V N+++ +IHWHGI Q G+ DGVP VTQCPI G+T Y+F
Sbjct: 102 ADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQ 161
Query: 66 AGTHFWHAHT 75
GT ++H+H
Sbjct: 162 YGTTWYHSHF 171
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 107 bits (268), Expect = 4e-30
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 7 VCEGDRVVVDVRNSMDGLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
V EGD V+V+V N+ IHWHG+HQ+GT SDGVP VTQ PI G+++ Y+F A+
Sbjct: 39 VQEGDDVIVNVTNNTS--LPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKAD 96
Query: 66 -AGTHFWHAHT 75
GT ++H H
Sbjct: 97 RIGTLWYHCHV 107
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 108 bits (273), Expect = 5e-30
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPIT-QGNTFRYQFTAN 65
GD V V V N++ +IHWHGI Q+ T DG VT+CPI +G Y++ A
Sbjct: 71 ANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR 130
Query: 66 -AGTHFWHAHT 75
GT ++H+H
Sbjct: 131 QYGTSWYHSHF 141
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 108 bits (271), Expect = 8e-30
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 6 NVCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
+ D ++V N +D L T IHWHG+ QRGT ++DG V QCPI+ G+ F Y+
Sbjct: 37 RGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYK 96
Query: 62 FTA--NAGTHFWHAHT 75
FT +AGT ++H+H
Sbjct: 97 FTPAGHAGTFWYHSHF 112
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 74.1 bits (182), Expect = 6e-18
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AG 67
EGD + + N+ +TIH+HG+H+ DG P + I G +F Y+F A G
Sbjct: 72 EGDALRIHFTNAGA-HPHTIHFHGVHRATM---DGTPGIGAGSIAPGQSFTYEFDATPFG 127
Query: 68 THFWHAHT 75
TH +H H
Sbjct: 128 THLYHCHQ 135
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 69.9 bits (171), Expect = 4e-16
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
V D V + + N + +HWHG+ D I G ++ Y+FT
Sbjct: 51 VRPRDTVRLTLENRLP-EPTNLHWHGLPISPK--VDDP----FLEIPPGESWTYEFTVPK 103
Query: 66 --AGTHFWHAHT 75
AGT ++H H
Sbjct: 104 ELAGTFWYHPHL 115
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 69.6 bits (170), Expect = 5e-16
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
+ G RV + ++N + +HWHG +D P IT G ++ Y F
Sbjct: 42 LRRGQRVDMTLKNKLT-EPTIVHWHGFDVNWH--NDAHP---SFAITPGESYNYSFDVVN 95
Query: 66 -AGTHFWHAHT 75
AGT+ +H H
Sbjct: 96 RAGTYLYHPHP 106
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 68.4 bits (167), Expect = 1e-15
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
+ G V VD+ N + E T+HWHG+ G DG P Q I G +
Sbjct: 52 LQRGKAVTVDIYNQLT-EETTLHWHGLEVPGE--VDGGP---QGIIPPGGKRSVTLNVDQ 105
Query: 66 -AGTHFWHAHT 75
A T ++H H
Sbjct: 106 PAATCWFHPHQ 116
Score = 24.1 bits (52), Expect = 5.7
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCP-----ITQGNTFRY--Q 61
+G + D + + H HG R + P + +GN +
Sbjct: 398 KGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVK 457
Query: 62 FTANAGTHF---WHAH 74
F +A H H
Sbjct: 458 FNHDAPKEHAYMAHCH 473
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 67.3 bits (164), Expect = 3e-15
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
V EGD++ + V+N + TIHWHG+ DG P PI G Y+F
Sbjct: 86 VFEGDKLEILVKNKLK-EATTIHWHGVPVPPD--QDGSP---HDPILAGEERIYRFEIPQ 139
Query: 66 --AGTHFWHAHT 75
AGT+++H H
Sbjct: 140 DSAGTYWYHPHP 151
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 65.8 bits (160), Expect = 1e-14
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN--AG 67
G VV N+ + N++H HG R DG + G+ Y + A
Sbjct: 76 GVETVVRFINNAE-APNSVHLHGSFSRAA--FDGWA---EDITEPGSFKDYYYPNRQSAR 129
Query: 68 THFWHAHT 75
T ++H H
Sbjct: 130 TLWYHDHA 137
Score = 26.9 bits (59), Expect = 0.51
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQG---------- 55
NV G ++ N+ +G + IH H + + + G T P G
Sbjct: 378 NVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWLGRR 437
Query: 56 --NTFRYQFTANAGTHFWHAH 74
+ G + +H H
Sbjct: 438 ETVVVEAHYAPFPGVYMFHCH 458
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 59.3 bits (143), Expect = 2e-12
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
V EGD + ++ N+MD + ++H HG+ + SDG + + + G T Y + +
Sbjct: 81 VNEGDTLHIEFTNTMD-VRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYTWRTHK 136
Query: 66 -------------AGTHFWHAHT 75
AG +H H
Sbjct: 137 PGRRDDGTWRPGSAGYWHYHDHV 159
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 58.5 bits (141), Expect = 3e-12
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
V EGD + ++ N+MD + ++H HG+ + SDG + + + G T Y +
Sbjct: 40 VNEGDTLHIEFTNTMD-VRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYTWRTHK 95
Query: 65 ------------NAGTHFWHAHT 75
+AG +H H
Sbjct: 96 PGRRDDGTWRPGSAGYWHYHDHV 118
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 58.4 bits (141), Expect = 4e-12
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 7 VCEGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
V EGD + ++ N I H + G+T + F A
Sbjct: 64 VREGDEIEFNLSNHPSSKMPHNIDLHAVT-------GPGGGAESSFTAPGHTSTFNFKAL 116
Query: 66 -AGTHFWHAHT 75
G + +H T
Sbjct: 117 NPGLYIYHCAT 127
Score = 29.9 bits (67), Expect = 0.051
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG----VPFVTQCPITQGNTFR 59
G+ V + + N L ++ H G Y +G V I G
Sbjct: 205 SLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTV-YVEGGSLKNHNVQTTLIPAGGAAI 263
Query: 60 YQFTA-NAGTHFWHAH 74
+F GT H
Sbjct: 264 VEFKVEVPGTFILVDH 279
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 58.1 bits (139), Expect = 5e-12
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 16/82 (19%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVPFVTQCPITQGNTFRYQFTA 64
GD +++ +N I+ HGI + GV + PI G F+Y++T
Sbjct: 458 VGDTLLIIFKNQAS-RPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTV 516
Query: 65 -----------NAGTHFWHAHT 75
T ++ +
Sbjct: 517 TVEDGPTKSDPRCLTRYYSSFV 538
Score = 51.9 bits (123), Expect = 8e-10
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVPFVTQC--PITQGNTFRYQF 62
D VV+ ++N ++H G+ G +Y D + + G + Y +
Sbjct: 81 VYDTVVITLKNMAS-HPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPGGSHTYVW 139
Query: 63 TA-----------NAGTHFWHAHT 75
T+ + +H
Sbjct: 140 QVLKENGPMASDPLCLTYSYLSHV 163
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 55.4 bits (133), Expect = 5e-11
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
V +GD V + N + ++ G+ G G P ++ +
Sbjct: 54 VWKGDDVKLIYSNRLTE-NVSMTVAGLQVPGPL--MGGP---ARMMSPNADWAPVLPIRQ 107
Query: 66 -AGTHFWHAHT 75
A T ++HA+T
Sbjct: 108 NAATLWYHANT 118
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 54.9 bits (132), Expect = 7e-11
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
V EGD V V+ N+ + H + G T + F A
Sbjct: 74 VREGDTVEVEFSNNPS----STVPHNVDFHAAT--GQGGGAAATFTAPGRTSTFSFKALQ 127
Query: 66 AGTHFWHAHT 75
G + +H
Sbjct: 128 PGLYIYHCAV 137
Score = 23.7 bits (51), Expect = 7.6
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFR 59
G+ V + V N L ++ H G Y +G V + G +
Sbjct: 215 ALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSAI 273
Query: 60 YQFTA-NAGTHFWHAH 74
+F G + H
Sbjct: 274 VEFKVDIPGNYTLVDH 289
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 54.5 bits (131), Expect = 1e-10
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 7 VCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
V GD V + ++N D + +++ +HG G TQ G F A
Sbjct: 199 VRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGAAAFTQ--TDPGEETVVTFKAL 251
Query: 66 -AGTHFWHAHT 75
G + +H T
Sbjct: 252 IPGIYVYHCAT 262
Score = 35.6 bits (82), Expect = 4e-04
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 13/69 (18%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
V EG+ V V++ N H + D + + + + F A
Sbjct: 59 VHEGETVQVNLVN------GEGAQHDVV------VDQYAARSAIVNGKNASSTFSFVASK 106
Query: 66 AGTHFWHAH 74
G ++
Sbjct: 107 VGEFNYYCS 115
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 52.2 bits (125), Expect = 6e-10
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
V E D V + + N + H I + + G +F A
Sbjct: 75 VHENDYVELRLINP----DTNTLLHNIDFHAAT--GALGGGALTQVNPGEETTLRFKATK 128
Query: 66 AGTHFWHAHT 75
G +H
Sbjct: 129 PGVFVYHCAP 138
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 52.1 bits (124), Expect = 8e-10
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVP--FVTQCPITQGNTFRYQF 62
GD + V +N +IH GI G YSD + G + Y++
Sbjct: 66 VGDIMKVHFKNKAH-KPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEW 124
Query: 63 TA-----------NAGTHFWHAHT 75
TH ++++
Sbjct: 125 IISEHSGPTHDDPPCLTHIYYSYV 148
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 51.3 bits (123), Expect = 1e-09
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
V EGD V + + N H + G + + G +F A
Sbjct: 69 VHEGDYVQLTLVNPAT----NAMPHNVDFHGAT--GALGGAKLTNVNPGEQATLRFKADR 122
Query: 66 AGTHFWHAHT 75
+GT +H
Sbjct: 123 SGTFVYHCAP 132
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 50.7 bits (120), Expect = 2e-09
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 22/86 (25%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--------VTQCPITQGNTFRY 60
GD+V V ++N T H HGI +G + + G + Y
Sbjct: 101 TGDKVYVHLKNLAS-RPYTFHSHGITYYKE--HEGAIYPDNTTDFQRADDKVYPGEQYTY 157
Query: 61 QFTA-----------NAGTHFWHAHT 75
A N T +H+H
Sbjct: 158 MLLATEEQSPGEGDGNCVTRIYHSHI 183
Score = 45.7 bits (107), Expect = 1e-07
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 21/78 (26%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA---- 64
GD+V + +N +IH HG+ T P G T Y +
Sbjct: 816 VGDKVKIIFKNMAT-RPYSIHAHGVQ---------TESSTVTPTLPGETLTYVWKIPERS 865
Query: 65 -------NAGTHFWHAHT 75
+++
Sbjct: 866 GAGTEDSACIPWAYYSTV 883
Score = 39.6 bits (91), Expect = 2e-05
Identities = 10/88 (11%), Positives = 20/88 (22%), Gaps = 22/88 (25%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIH----------QRGTQYSDGVPFVTQCPITQGNTF 58
GD + V N +I G+ + + TF
Sbjct: 457 VGDTIRVTFHNKGA-YPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETF 515
Query: 59 RYQFTA-----------NAGTHFWHAHT 75
Y++T +++
Sbjct: 516 TYEWTVPKEVGPTNADPVCLAKMYYSAV 543
Score = 30.3 bits (67), Expect = 0.036
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
+C+GD VV + + N HGI+ G Y + +
Sbjct: 636 MCKGDSVVWYLFS----AGNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDT 691
Query: 66 AGTHFWHAHT 75
GT T
Sbjct: 692 EGTFNVECLT 701
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 48.7 bits (116), Expect = 9e-09
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
V EGD V + + N + H I + I G +F A
Sbjct: 68 VHEGDYVELTLINPPE----NTMPHNIDFHAAT--GALGGGGLTLINPGEKVVLRFKATR 121
Query: 66 AGTHFWHAHT 75
AG +H
Sbjct: 122 AGAFVYHCAP 131
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 48.2 bits (114), Expect = 2e-08
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 30/97 (30%)
Query: 7 VCEGDRVVVDVRNSMDG---------------------LENTIHWHGIHQRGTQYSDGVP 45
V + V V N++ ++ +H HG SDG P
Sbjct: 62 VKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDD--SDGYP 119
Query: 46 --FVTQCPITQGNTFR---YQFTAN--AGTHFWHAHT 75
+ ++ G F+ Y + ++H H
Sbjct: 120 EAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHA 156
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 47.6 bits (112), Expect = 3e-08
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN--AG 67
V + + + H HG G +DG + G+ ++ + A
Sbjct: 112 RGGVEPNKDVAALPAWSVTHLHGAQTGGG--NDGWA---DNAVGFGDAQLSEYPNDHQAT 166
Query: 68 THFWHAHT 75
++H H
Sbjct: 167 QWWYHDHA 174
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 38.6 bits (89), Expect = 4e-05
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 18/83 (21%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIH----QRGTQYSDGVP--FVTQCPITQGNTFRYQF 62
D + V +N ++H HG+ G Y D P F I T+ Y +
Sbjct: 75 VDDVIQVRFKNLAS-RPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVW 133
Query: 63 TA-----------NAGTHFWHAH 74
A +++
Sbjct: 134 HATTRSGPENPGSACRAWAYYSA 156
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 29.4 bits (65), Expect = 0.072
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
D ++V RN + + I Q P + T Y +
Sbjct: 206 EDNIMVTFRNQAS-RPYSFYSSLISYEEDQRQGAEPRKN--FVKPNETKTYFWKV 257
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 25.7 bits (57), Expect = 0.91
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 17/68 (25%)
Query: 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
L G+RV ++ + + + W + +G I G RY+
Sbjct: 14 LEDTTAYCGERVELECE--VSEDDANVKW---------FKNGEE------IIPGPKSRYR 56
Query: 62 FTANAGTH 69
H
Sbjct: 57 IRVEGKKH 64
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 95
Score = 25.5 bits (56), Expect = 1.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 44
G V V +R+ + + + G + G+
Sbjct: 11 GCPVKVQLRSGEEKFPGVVRFRGPLL-AERTVSGI 44
>1eex_B Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel,
lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP:
c.51.3.1 PDB: 1dio_B* 1egm_B* 1egv_B* 1iwb_B* 1uc4_B*
1uc5_B* 3auj_B*
Length = 224
Score = 25.8 bits (56), Expect = 1.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 33 IHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
IHQ+G + Q P+ T+R Q NA
Sbjct: 140 IHQQGLPPLSNLELFPQAPLLTLETYR-QIGKNA 172
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
nucleus, phosphorylation, chromatin regulator, UBL
conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
sapiens}
Length = 159
Score = 23.7 bits (51), Expect = 7.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 18 RNSMDGLENTIHWHGIHQR 36
+ + G+ + I W+ IH +
Sbjct: 110 YSRVLGVSDVITWNDIHHK 128
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 23.6 bits (52), Expect = 8.1
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 18 RNSMDGLENTIHWH 31
N + G E H H
Sbjct: 458 DNVLAGREGHHHHH 471
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A
{Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A
1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Length = 129
Score = 23.4 bits (50), Expect = 8.6
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 48 TQCPITQGNTFRYQFT 63
+CP+ +G + ++T
Sbjct: 76 MKCPLVKGQQYDAKYT 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 23.7 bits (50), Expect = 8.8
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 1 MLYPKNVCEGDRVVVD--VRNSM---DGLENTIHWHGIHQR 36
+++ + VVV+ + S+ E+TI I+
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
>2bem_A CBP21; chitin-binding protein, chitin degradation,
chitin-binding, FNIII-like fold; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 PDB: 2lhs_A 2ben_A
Length = 170
Score = 23.3 bits (50), Expect = 9.3
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 51 PITQG-NTFRYQFTANAGTHFWH 72
+ G N+F ++ TA T W
Sbjct: 71 NLKTGPNSFTWKLTARHSTTSWR 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.466
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,206,267
Number of extensions: 55919
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 53
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)