RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy88
(75 letters)
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 131
Score = 69.3 bits (169), Expect = 9e-18
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 6 NVCEGDRVVVDVRNSMDGLEN----TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
+ D ++V N +D +IHWHG+ QRGT ++DG V QCPI+ G+ F Y+
Sbjct: 37 RGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYK 96
Query: 62 FTA--NAGTHFWHAHT 75
FT +AGT ++H+H
Sbjct: 97 FTPAGHAGTFWYHSHF 112
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 65.0 bits (158), Expect = 5e-16
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 6 NVCEGDRVVVDVRNSMDGLEN----TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
DR ++V + + +IHWHG Q GT DG FV QCPI +F Y
Sbjct: 37 TGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYD 96
Query: 62 FTA--NAGTHFWHAHT 75
F AGT+++H+H
Sbjct: 97 FVVPGQAGTYWYHSHL 112
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 64.3 bits (156), Expect = 8e-16
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 6 NVCEGDRVVVDVRNSMDGLE----NTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
+GDR ++V +++ +IHWHG Q GT ++DG FV QCPI G++F Y
Sbjct: 37 TGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYD 96
Query: 62 FTA--NAGTHFWHAHT 75
F AGT ++H+H
Sbjct: 97 FHVPDQAGTFWYHSHL 112
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 129
Score = 55.9 bits (134), Expect = 2e-12
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
GD VVV++ N + IHWHGI QRGT ++DG ++QC I G TF Y FT +
Sbjct: 37 RANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVD 96
Query: 66 -AGTHFWHAHT 75
GT F+H H
Sbjct: 97 NPGTFFYHGHL 107
>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 52.8 bits (126), Expect = 6e-11
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 18/87 (20%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQ----YSDGVP--FVTQCPITQGNTFR 59
GD+V V ++N H HGI Y D + G +
Sbjct: 79 KAETGDKVYVHLKNLASRPYT-FHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYT 137
Query: 60 YQFTA-----------NAGTHFWHAHT 75
Y A N T +H+H
Sbjct: 138 YMLLATEEQSPGEGDGNCVTRIYHSHI 164
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 159
Score = 50.9 bits (121), Expect = 3e-10
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
V EGD V + + N H + G + + G +F A
Sbjct: 69 VHEGDYVQLTLVNPA----TNAMPHNVEFHGAT--GALGGAKLTNVNPGEQATLRFKADR 122
Query: 66 AGTHFWHAHT 75
+GT +H
Sbjct: 123 SGTFVYHCAP 132
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 50.1 bits (119), Expect = 9e-10
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 22/90 (24%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQ----------RGTQYSDGVPFVTQCPITQGN 56
GD + V N +I G+ + +
Sbjct: 90 AEVGDTIRVTFHNKGAY-PLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTE 148
Query: 57 TFRYQFTA-----------NAGTHFWHAHT 75
TF Y++T +++
Sbjct: 149 TFTYEWTVPKEVGPTNADPVCLAKMYYSAV 178
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 48.5 bits (115), Expect = 2e-09
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
V EGD V V+ N+ + H + G G T + F A
Sbjct: 61 RVREGDTVEVEFSNNPS----STVPHNVDFHAATGQGGGA--AATFTAPGRTSTFSFKAL 114
Query: 66 -AGTHFWHAHT 75
G + +H
Sbjct: 115 QPGLYIYHCAV 125
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 48.5 bits (115), Expect = 2e-09
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 18/86 (20%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQ----YSDGVPFVTQC--PITQGNTFRY 60
GD + V +N +IH GI YSD + + + G + Y
Sbjct: 64 AEVGDIMKVHFKNKAHK-PLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTY 122
Query: 61 QFTA-----------NAGTHFWHAHT 75
++ TH ++++
Sbjct: 123 EWIISEHSGPTHDDPPCLTHIYYSYV 148
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 48.2 bits (114), Expect = 3e-09
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 6 NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA- 64
GD V V V N++ +IHWHGIHQ+ T DG VT+CPI R
Sbjct: 70 VANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRA 129
Query: 65 -NAGTHFWHAHT 75
GT ++H+H
Sbjct: 130 RQYGTSWYHSHF 141
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 153
Score = 46.7 bits (110), Expect = 7e-09
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
V EGD V + + N + H I + G +T I G +F A
Sbjct: 66 VHEGDYVELTLINPPE----NTMPHNIDFHAATGALGGGGLT--LINPGEKVVLRFKATR 119
Query: 66 AGTHFWHAHT 75
AG +H
Sbjct: 120 AGAFVYHCAP 129
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId:
920]}
Length = 153
Score = 45.6 bits (107), Expect = 3e-08
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQY-------SDGVPFVTQCPITQGNTFR 59
+ G V V N+ G H I ++G Y G
Sbjct: 64 IPAGATVDVTFINTNKGF---GHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGY 120
Query: 60 YQFTA--NAGTHFWHAHT 75
FT AGT+++
Sbjct: 121 TNFTWHPTAGTYYYVCQI 138
>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 181
Score = 45.6 bits (107), Expect = 3e-08
Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 26/96 (27%)
Query: 6 NVCEGDRVVVDVRNSM---------------------DGLENTIHWHGIHQRGTQYSDGV 44
V + V V N++ ++ +H HG
Sbjct: 60 EVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDDSDGYPE 119
Query: 45 PFVTQCPITQG---NTFRYQFTAN--AGTHFWHAHT 75
+ ++ G Y + ++H H
Sbjct: 120 AWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHA 155
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 157
Score = 45.1 bits (106), Expect = 4e-08
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
V E D V + + N H I + + G +F A
Sbjct: 68 VHENDYVELRLINPDT----NTLLHNIDFHAAT--GALGGGALTQVNPGEETTLRFKATK 121
Query: 66 AGTHFWHAHT 75
G +H
Sbjct: 122 PGVFVYHCAP 131
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 42.4 bits (99), Expect = 3e-07
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
+ G V VD+ N + E T+HWHG+ G DG P Q I G +
Sbjct: 50 LQRGKAVTVDIYNQLT-EETTLHWHGLEVPGEV--DGGP---QGIIPPGGKRSVTLNVDQ 103
Query: 66 -AGTHFWHAHT 75
A T ++H H
Sbjct: 104 PAATCWFHPHQ 114
>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 42.7 bits (100), Expect = 4e-07
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 21/80 (26%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
GD+V + +N +IH HG+ + T P G T Y +
Sbjct: 90 ADVGDKVKIIFKNMAT-RPYSIHAHGVQTESS---------TVTPTLPGETLTYVWKIPE 139
Query: 65 ---------NAGTHFWHAHT 75
+++
Sbjct: 140 RSGAGTEDSACIPWAYYSTV 159
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 139
Score = 40.2 bits (93), Expect = 2e-06
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Query: 2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
L + E + V + + N + G + H Q + + P+ G+ +
Sbjct: 51 LPGLRMYEQEWVRLHLLN-LGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLE 109
Query: 62 FTA-NAGTHFWHAHT 75
A G
Sbjct: 110 MKASKPGWWLLDTEV 124
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 40.1 bits (93), Expect = 3e-06
Identities = 11/70 (15%), Positives = 16/70 (22%), Gaps = 2/70 (2%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
+ GD V + + + H GV I G +
Sbjct: 64 MHVGDEVNWYLMGMGN-EIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRT 122
Query: 66 AGTHFWHAHT 75
G H H
Sbjct: 123 PGIWLLHCHV 132
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 145
Score = 38.6 bits (89), Expect = 9e-06
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
+C+GD VV + ++ N HGI+ G Y + +
Sbjct: 63 MCKGDSVVWYLFSAG----NEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDT 118
Query: 66 AGTHFWHAHT 75
GT T
Sbjct: 119 EGTFNVECLT 128
>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 116
Score = 35.1 bits (80), Expect = 1e-04
Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 5/76 (6%)
Query: 1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRY 60
+ VC D + + + IH G ++ + +
Sbjct: 33 TMPDITVCAHDHISWHLIGMS----SGPELFSIHFNGQVLEQNHHKISAITLVSATSTTA 88
Query: 61 QFTA-NAGTHFWHAHT 75
T G +
Sbjct: 89 NMTVSPEGRWTIASLI 104
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 146
Score = 34.5 bits (78), Expect = 3e-04
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63
++C DRV + N + H G ++ + + F
Sbjct: 61 GLSMCAEDRVKWYLFGMG----NEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMV 116
Query: 64 A-NAGTHFWHAHT 75
A N G
Sbjct: 117 AQNPGEWMLSCQN 129
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 67
Score = 23.7 bits (51), Expect = 1.3
Identities = 4/35 (11%), Positives = 9/35 (25%), Gaps = 11/35 (31%)
Query: 51 PITQGNTFRYQFTA-----------NAGTHFWHAH 74
I T+ Y + A +++
Sbjct: 2 AIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSA 36
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 24.2 bits (52), Expect = 1.4
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPIT-------QGNTFR 59
+G + D + + H HG R + P + +
Sbjct: 89 AAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVL 148
Query: 60 YQFTANA---GTHFWHAH 74
+F +A + H H
Sbjct: 149 VKFNHDAPKEHAYMAHCH 166
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 23.6 bits (51), Expect = 1.4
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 21 MDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63
+ G+E + + Y V P + F +
Sbjct: 14 LTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLA 56
>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 199
Score = 24.4 bits (52), Expect = 1.5
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQ-------- 54
YP + + G + H HG + + + PI +
Sbjct: 72 YPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGTP 131
Query: 55 --GNTFRYQFTA-NAGTHFWHAH 74
G+ +F N G F H H
Sbjct: 132 AAGDNVTIRFQTDNPGPWFLHCH 154
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 157
Score = 23.8 bits (50), Expect = 2.2
Identities = 7/67 (10%), Positives = 11/67 (16%)
Query: 9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGT 68
E V+D S + + I R T
Sbjct: 18 EPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAERYVLTCGSSLLARFAVAE 77
Query: 69 HFWHAHT 75
+
Sbjct: 78 VQALSGK 84
>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 23.9 bits (51), Expect = 2.4
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG---VPFVTQCPITQGNTFR 59
G+ V + V N L ++ H G G V + G +
Sbjct: 51 NALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAI 110
Query: 60 YQFTAN-AGTHFWHAH 74
+F + G + H
Sbjct: 111 VEFKVDIPGNYTLVDH 126
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 23.7 bits (51), Expect = 2.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 9 EGDRVVVDVRNSMDG 23
DRV +D S+DG
Sbjct: 17 AEDRVTIDFTGSVDG 31
>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix
[TaxId: 56636]}
Length = 133
Score = 23.7 bits (51), Expect = 2.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 12 RVVVDVRNSMDGLENTIHWHGI 33
RV VDVR + + + G+
Sbjct: 5 RVYVDVREERSPVPSILESLGV 26
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite
(Dermatophagoides farinae), Der f 2 [TaxId: 6954]}
Length = 129
Score = 23.7 bits (51), Expect = 2.7
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 11 DRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63
++++ S+DGLE I GI + +CP+ +G + ++T
Sbjct: 48 KTAKIEIKASLDGLE--IDVPGIDTNACHF-------MKCPLVKGQQYDAKYT 91
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 22.7 bits (48), Expect = 5.1
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 7 VCEGDRVVVDVRNSMDGLENTIHW 30
+ GD ++D +D +
Sbjct: 2 LANGDIAIIDFTGIVDNKKLASAS 25
>d2bema_ b.1.18.2 (A:) Chitin-binding protein CBP21 {Serratia
marcescens [TaxId: 615]}
Length = 170
Score = 22.8 bits (49), Expect = 5.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 56 NTFRYQFTANAGTHFWH 72
N+F ++ TA T W
Sbjct: 77 NSFTWKLTARHSTTSWR 93
>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43,
C-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
109322]}
Length = 116
Score = 22.5 bits (48), Expect = 5.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 52 ITQGNTFRYQFTANAGTHF 70
++ Y FTA AG
Sbjct: 9 LSTSQKATYSFTATAGKPL 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.466
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,188
Number of extensions: 11027
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 39
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.5 bits)