Query psy880
Match_columns 263
No_of_seqs 229 out of 1371
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 19:35:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0476|consensus 100.0 3.6E-37 7.9E-42 308.6 11.4 193 65-263 16-266 (931)
2 cd03684 ClC_3_like ClC-3-like 100.0 5.1E-29 1.1E-33 241.8 14.2 147 112-263 4-150 (445)
3 cd03683 ClC_1_like ClC-1-like 100.0 6.6E-29 1.4E-33 239.7 14.5 152 112-263 8-170 (426)
4 cd01036 ClC_euk Chloride chann 100.0 2.3E-28 4.9E-33 235.2 14.1 127 137-263 36-169 (416)
5 KOG0474|consensus 99.9 8.8E-28 1.9E-32 238.0 9.9 153 111-263 93-270 (762)
6 cd01034 EriC_like ClC chloride 99.9 1E-26 2.2E-31 221.7 15.4 144 114-263 2-149 (390)
7 cd03685 ClC_6_like ClC-6-like 99.9 4E-26 8.6E-31 222.9 16.2 154 110-263 37-210 (466)
8 KOG0475|consensus 99.9 8.9E-28 1.9E-32 238.0 3.8 125 136-263 128-252 (696)
9 cd01033 ClC_like Putative ClC 99.9 2.3E-24 5E-29 205.9 13.5 141 112-263 4-153 (388)
10 PRK01610 putative voltage-gate 99.9 3.1E-24 6.7E-29 207.1 14.2 143 111-263 10-167 (418)
11 COG0038 EriC Chloride channel 99.9 5.9E-24 1.3E-28 206.7 13.8 118 138-263 63-181 (443)
12 PRK01862 putative voltage-gate 99.9 9.6E-24 2.1E-28 209.8 14.3 146 109-263 28-186 (574)
13 PRK05277 chloride channel prot 99.9 2.4E-23 5.2E-28 201.2 14.4 116 141-263 47-162 (438)
14 cd01031 EriC ClC chloride chan 99.9 2.9E-23 6.2E-28 198.4 14.5 118 138-263 37-154 (402)
15 PF00654 Voltage_CLC: Voltage 99.9 3.1E-23 6.7E-28 195.4 9.3 109 148-263 2-110 (355)
16 cd00400 Voltage_gated_ClC CLC 99.9 8.8E-22 1.9E-26 186.5 15.1 143 112-263 4-153 (383)
17 cd03682 ClC_sycA_like ClC sycA 99.9 4.1E-21 8.8E-26 182.7 13.9 143 111-263 4-146 (378)
18 PRK03655 putative ion channel 99.8 1.3E-19 2.7E-24 175.3 13.3 139 111-263 18-167 (414)
19 cd01034 EriC_like ClC chloride 99.5 6E-13 1.3E-17 127.2 13.3 93 160-263 261-353 (390)
20 cd01033 ClC_like Putative ClC 99.4 1.8E-12 3.9E-17 124.2 12.2 144 111-263 210-355 (388)
21 cd00400 Voltage_gated_ClC CLC 99.4 4.2E-12 9.1E-17 120.6 11.9 146 111-263 211-359 (383)
22 PRK05277 chloride channel prot 99.3 8.9E-12 1.9E-16 120.9 12.6 149 111-263 222-374 (438)
23 PRK01862 putative voltage-gate 99.2 6.3E-11 1.4E-15 118.4 13.0 145 111-263 244-392 (574)
24 cd03682 ClC_sycA_like ClC sycA 99.2 1.6E-10 3.5E-15 110.2 12.9 137 111-263 205-345 (378)
25 PRK01610 putative voltage-gate 99.2 2.1E-10 4.5E-15 111.3 12.4 144 111-263 226-374 (418)
26 cd01031 EriC ClC chloride chan 99.0 3.1E-09 6.8E-14 101.9 11.8 144 111-262 212-360 (402)
27 COG0038 EriC Chloride channel 98.5 1.8E-06 3.9E-11 84.7 13.1 147 111-262 240-387 (443)
28 PRK03655 putative ion channel 98.4 3.6E-06 7.8E-11 82.0 12.7 135 112-258 229-366 (414)
29 PF00654 Voltage_CLC: Voltage 98.4 2.5E-06 5.5E-11 80.8 10.6 146 111-262 169-325 (355)
30 cd03684 ClC_3_like ClC-3-like 98.2 2.1E-05 4.5E-10 77.1 12.9 76 188-263 310-397 (445)
31 cd03685 ClC_6_like ClC-6-like 97.9 0.00012 2.6E-09 72.2 12.6 74 188-263 339-412 (466)
32 cd01036 ClC_euk Chloride chann 97.9 0.00012 2.6E-09 71.1 11.6 77 187-263 298-380 (416)
33 cd03683 ClC_1_like ClC-1-like 97.5 0.0013 2.8E-08 64.3 11.5 76 187-262 297-377 (426)
34 KOG0475|consensus 90.5 1.8 4E-05 44.9 9.7 76 186-261 403-484 (696)
35 PF10518 TAT_signal: TAT (twin 60.2 13 0.00027 22.7 2.9 23 239-261 3-25 (26)
36 KOG4327|consensus 56.5 10 0.00022 34.3 2.8 46 43-89 161-214 (218)
37 PF14235 DUF4337: Domain of un 54.7 65 0.0014 27.7 7.4 11 136-146 135-145 (157)
38 KOG0474|consensus 36.8 5.6E+02 0.012 27.5 13.4 67 183-254 449-516 (762)
39 PF10399 UCR_Fe-S_N: Ubiquitin 33.8 45 0.00097 22.6 2.5 19 238-256 10-29 (41)
40 PF14362 DUF4407: Domain of un 33.5 1.8E+02 0.004 26.8 7.5 27 134-160 41-67 (301)
41 COG4575 ElaB Uncharacterized c 31.4 2.2E+02 0.0048 23.2 6.5 14 81-94 30-43 (104)
42 PF05884 ZYG-11_interact: Inte 29.7 5.1E+02 0.011 24.9 14.3 20 72-91 37-56 (299)
43 TIGR01113 mtrE N5-methyltetrah 28.6 95 0.0021 29.3 4.5 48 111-160 224-273 (283)
44 PF08358 Flexi_CP_N: Carlaviru 28.2 94 0.002 22.2 3.5 23 15-37 2-27 (52)
45 PRK11677 hypothetical protein; 27.4 71 0.0015 27.0 3.3 24 138-161 3-26 (134)
46 PF11568 Med29: Mediator compl 25.8 50 0.0011 28.5 2.1 79 8-93 47-132 (148)
47 PF10337 DUF2422: Protein of u 25.6 4E+02 0.0086 26.3 8.6 75 183-257 131-209 (459)
48 PRK12792 flhA flagellar biosyn 25.0 3.1E+02 0.0068 29.3 8.1 89 139-255 209-301 (694)
49 PLN02975 complex I subunit 25.0 1.8E+02 0.0038 23.5 4.9 69 169-239 17-91 (97)
50 COG4603 ABC-type uncharacteriz 23.9 6.9E+02 0.015 24.4 9.7 62 187-253 64-128 (356)
51 PRK10263 DNA translocase FtsK; 22.8 2.9E+02 0.0062 31.8 7.6 42 214-259 141-182 (1355)
52 PF10777 YlaC: Inner membrane 22.7 4.3E+02 0.0094 23.0 7.1 22 104-125 28-49 (155)
53 PRK09765 PTS system 2-O-a-mann 22.5 6.8E+02 0.015 26.1 10.0 20 189-208 458-477 (631)
54 COG5216 Uncharacterized conser 22.4 38 0.00082 25.2 0.6 14 44-57 15-29 (67)
55 PF05781 MRVI1: MRVI1 protein; 22.3 2E+02 0.0044 29.7 5.9 25 138-162 481-505 (538)
56 PRK15337 type III secretion sy 20.9 3.1E+02 0.0066 29.3 7.0 57 188-259 238-298 (686)
57 PF12273 RCR: Chitin synthesis 20.5 81 0.0018 25.7 2.3 6 138-143 2-7 (130)
58 PRK09430 djlA Dna-J like membr 20.3 2E+02 0.0043 26.7 5.0 32 189-225 3-34 (267)
59 TIGR01398 FlhA flagellar biosy 20.2 3.3E+02 0.0071 29.0 7.1 93 139-259 195-291 (678)
60 PRK10404 hypothetical protein; 20.1 4.4E+02 0.0094 21.0 6.3 11 83-93 29-39 (101)
No 1
>KOG0476|consensus
Probab=100.00 E-value=3.6e-37 Score=308.64 Aligned_cols=193 Identities=55% Similarity=0.831 Sum_probs=159.7
Q ss_pred ccccccCCcccc--cccchhhhhHHHHHHHhhh-----hhh--hhh--hhhH--HHhhhhcccchHHHHHHHHHHHHHHh
Q psy880 65 LQEYDASPGMYG--RYTKELGEFAKEEAKKLNK-----KRK--KDR--LQAD--ELRNKYRGRCATKFAAVFRFVWKHTF 131 (263)
Q Consensus 65 ~~~~~~~~~myg--~y~~~~~~~~~~~~~~~~~-----~~~--~~~--~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~ 131 (263)
...-+ +++||| |+++|+|....+|+.+... ... .++ ..++ |+.+ .++.|...+....++++
T Consensus 16 ~~~~~-~~l~~~p~k~~~~i~~~~~~~~~k~~l~~~e~~~~~~~~~~~~~~~~~e~~k-~~~~~~~~~~r~~q~i~---- 89 (931)
T KOG0476|consen 16 KSSHE-HKLMYGPHKMWNDIGLRIGDEPGKNTLLGDELGSDTDPDKREESEDGLEFLK-RRETCQEFLTRQMQNIV---- 89 (931)
T ss_pred hhhhh-hhhhcChHHHHHHHhHHhhcccccccccCcccCCCCCcccccccccccchhh-HHHHHHHHHHHHHHHHH----
Confidence 45555 899999 9999999999998887621 110 111 1111 2222 34445555555555554
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHhhhcc--------------------------------------------cCCCC
Q psy880 132 AKLGEDWVFLALLGIIMATISFFMDRGINII--------------------------------------------GRSSG 167 (263)
Q Consensus 132 ~~~~~~w~~l~llgl~~ali~~~l~~~~~~~--------------------------------------------~~GSG 167 (263)
.++++||+|+++||++||+++|.||+.+... +.|||
T Consensus 90 r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSG 169 (931)
T KOG0476|consen 90 RKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSG 169 (931)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCC
Confidence 4588999999999999999999999876532 28999
Q ss_pred hHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhh-hhccccCCcchhhHHHHH
Q psy880 168 IPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVT-SFQGIYENESRNSEMLAA 246 (263)
Q Consensus 168 IpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~-l~~~~~~n~~~~r~Llaa 246 (263)
|||||++|+|+.+++|+++|++++|+||+++++|||+++|||||+|||+++++++++++.. .|.++|+|++++.+||++
T Consensus 170 IPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~~enesR~~EmLaa 249 (931)
T KOG0476|consen 170 IPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGFFENESRNMEMLAA 249 (931)
T ss_pred ChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccccccCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 788999999999999999
Q ss_pred HHHHHHHHHhcCCccCC
Q psy880 247 ACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 247 GaAAGvAAaF~APIaGv 263 (263)
|||+||||+|.||||||
T Consensus 250 aCAVGVactFsAPiGgV 266 (931)
T KOG0476|consen 250 ACAVGVACTFSAPIGGV 266 (931)
T ss_pred HhhhhheeeecCcccee
Confidence 99999999999999997
No 2
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.96 E-value=5.1e-29 Score=241.83 Aligned_cols=147 Identities=36% Similarity=0.607 Sum_probs=124.4
Q ss_pred cccchHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHHHHH
Q psy880 112 RGRCATKFAAVFRFVWKHTFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLVA 191 (263)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~ 191 (263)
+|++...+..+.+|+.+...... .|+.++++++++++++.++.+.+.|.++|||||+||++++|...++.+++|+++.
T Consensus 4 ~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~ 81 (445)
T cd03684 4 IGLIAGLIDIIASWLSDLKEGYC--NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKWTLLI 81 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccccccccHHHHHH
Confidence 34445555555556554433322 4666778888888888888888999999999999999999987788999999999
Q ss_pred HHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 192 KIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 192 K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
|++++++++++|+|+|||||+||+||++|+.++|+++.++ .|+.++|++++||+|||+||+|||||||+
T Consensus 82 k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~---~~~~~~r~li~~GaaAGlaAaF~APi~G~ 150 (445)
T cd03684 82 KSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYR---RNEAKRREILSAAAAAGVAVAFGAPIGGV 150 (445)
T ss_pred HHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHhhhhHHhcCCccchh
Confidence 9999999999999999999999999999999999886432 36788999999999999999999999996
No 3
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.96 E-value=6.6e-29 Score=239.73 Aligned_cols=152 Identities=56% Similarity=0.820 Sum_probs=123.1
Q ss_pred cccchHHHHHHHHHHHHHHh-------hhhc----chHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccc
Q psy880 112 RGRCATKFAAVFRFVWKHTF-------AKLG----EDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVAL 180 (263)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~~~-------~~~~----~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~ 180 (263)
.|+++|.+...+++..+... .... ..|+.++++++++++++.++.+.+.|.++|||||||+++++|...
T Consensus 8 ~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 87 (426)
T cd03683 8 LGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTILRGVVL 87 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCCc
Confidence 45555655555555544332 1111 123555678889888888888889999999999999999999877
Q ss_pred cccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCc
Q psy880 181 KEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPI 260 (263)
Q Consensus 181 ~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~API 260 (263)
++.+++|+++.|++++++++++|+|+|||||+||+|+++|+.++|+++.....+.|+.+||+|++||+|||+||+|||||
T Consensus 88 ~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APl 167 (426)
T cd03683 88 PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPI 167 (426)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcc
Confidence 88999999999999999999999999999999999999999999987531111246677889999999999999999999
Q ss_pred cCC
Q psy880 261 GAT 263 (263)
Q Consensus 261 aGv 263 (263)
||+
T Consensus 168 aGv 170 (426)
T cd03683 168 GGV 170 (426)
T ss_pred eee
Confidence 996
No 4
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.96 E-value=2.3e-28 Score=235.23 Aligned_cols=127 Identities=36% Similarity=0.587 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHH
Q psy880 137 DWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIA 216 (263)
Q Consensus 137 ~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiG 216 (263)
.|+.++++++++++++.++.+.+.|.++|||||||+++++|.+.++++++|+++.|++++++++++|+|+|||||+||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iG 115 (416)
T cd01036 36 GYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLG 115 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHH
Confidence 45556788999998888888889999999999999999999877899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcc-------ccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 217 SIVATLLSKLVTSFQG-------IYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 217 A~igs~lg~~~~l~~~-------~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
+++|+.++++++...+ .+.|+.++|++++||+|||+||+|||||+|+
T Consensus 116 a~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGv 169 (416)
T cd01036 116 AMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGL 169 (416)
T ss_pred HHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceee
Confidence 9999999997653211 1246778999999999999999999999996
No 5
>KOG0474|consensus
Probab=99.95 E-value=8.8e-28 Score=238.03 Aligned_cols=153 Identities=27% Similarity=0.478 Sum_probs=122.9
Q ss_pred hcccchHHHHHHHHHHHHHH----hhh----hcc-------hH---HHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHH
Q psy880 111 YRGRCATKFAAVFRFVWKHT----FAK----LGE-------DW---VFLALLGIIMATISFFMDRGINIIGRSSGIPEMK 172 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~----~~~----~~~-------~w---~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~ 172 (263)
..|+++|++-....+..+.. |.. +.+ -| +.++..-++..+++-.++-.++|.+.||||||||
T Consensus 93 lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK 172 (762)
T KOG0474|consen 93 LIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVK 172 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhh
Confidence 46888887766665554442 110 111 12 2333444566677777777889999999999999
Q ss_pred HHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhh-------hhccccCCcchhhHHHH
Q psy880 173 TILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVT-------SFQGIYENESRNSEMLA 245 (263)
Q Consensus 173 ~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~-------l~~~~~~n~~~~r~Lla 245 (263)
++|||+++++.+.+||++.|++|++.++++|+.+|||||+||.||+||+.++|.-. .+.++|.|+.+||+++.
T Consensus 173 ~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~Vs 252 (762)
T KOG0474|consen 173 CYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVS 252 (762)
T ss_pred hhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999988411 12245678999999999
Q ss_pred HHHHHHHHHHhcCCccCC
Q psy880 246 AACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 246 aGaAAGvAAaF~APIaGv 263 (263)
||+||||||+|+||+|||
T Consensus 253 cGaAAGVaAAF~APvGGv 270 (762)
T KOG0474|consen 253 CGAAAGVAAAFRAPVGGV 270 (762)
T ss_pred cchHHhHHHHhCCCccce
Confidence 999999999999999996
No 6
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.94 E-value=1e-26 Score=221.69 Aligned_cols=144 Identities=23% Similarity=0.296 Sum_probs=117.2
Q ss_pred cchHHHHHHHHHHHHHHhhhhc-chHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhcc---ccccchhHHH
Q psy880 114 RCATKFAAVFRFVWKHTFAKLG-EDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVA---LKEYLTFNTL 189 (263)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~---~~~~l~~r~l 189 (263)
.+...+..+++++.+..+.... ..|+.++++|++++++++++.+ +.|.++||||||+++++++.. .++++++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~p~~~gsGi~~v~~~~~~~~~~~~~~~~~~r~~ 80 (390)
T cd01034 2 LVALLFAKLADLALALFQRLTATHPWLPLLLTPAGFALIAWLTRR-FFPGAAGSGIPQVIAALELPSAAARRRLLSLRTA 80 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHcccccccccccccHHHH
Confidence 3444555566666555443332 2455556778888777777765 789999999999999998532 3458999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 190 VAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 190 ~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
+.|++++++++++|+|+|||||+||+|+++|+.++|+++. .++.++|+|++||+|||+||+|||||+|+
T Consensus 81 ~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~-----~~~~~~r~li~~GaaAGlaa~F~aPlaG~ 149 (390)
T cd01034 81 VGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPK-----WGGLSERGLILAGGAAGLAAAFNTPLAGI 149 (390)
T ss_pred HHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHccc-----CchHHHHHHHHHHHHHhHHHHhCCcchhH
Confidence 9999999999999999999999999999999999999875 23578999999999999999999999985
No 7
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.94 E-value=4e-26 Score=222.89 Aligned_cols=154 Identities=27% Similarity=0.459 Sum_probs=125.0
Q ss_pred hhcccchHHHHHHHHHHHHHHh----hh----hc-----chHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHh
Q psy880 110 KYRGRCATKFAAVFRFVWKHTF----AK----LG-----EDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILR 176 (263)
Q Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~----~~----~~-----~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~ 176 (263)
...|+++|.+..+++++.+... .. .. ..|+.++++++++++++.++.+.+.|.+.|||||||+++++
T Consensus 37 ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~ 116 (466)
T cd03685 37 LLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLN 116 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHc
Confidence 3678888887777766654431 11 11 12455667888888988888888899999999999999999
Q ss_pred hccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhh----h---hccccCCcchhhHHHHHHHH
Q psy880 177 GVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVT----S---FQGIYENESRNSEMLAAACA 249 (263)
Q Consensus 177 g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~----l---~~~~~~n~~~~r~LlaaGaA 249 (263)
|...++.+++|+++.|++++++++++|+|+|||||+||+||++|+.++|++. . +.+.+.++.++|++++||+|
T Consensus 117 g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaA 196 (466)
T cd03685 117 GVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAA 196 (466)
T ss_pred CcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhh
Confidence 9877788899999999999999999999999999999999999999998421 0 01122366789999999999
Q ss_pred HHHHHHhcCCccCC
Q psy880 250 VGVGSCFGAPIGAT 263 (263)
Q Consensus 250 AGvAAaF~APIaGv 263 (263)
||+|++|||||+|+
T Consensus 197 AGlaaaF~APl~G~ 210 (466)
T cd03685 197 AGVAAAFGAPVGGV 210 (466)
T ss_pred cchhhccCCCccee
Confidence 99999999999995
No 8
>KOG0475|consensus
Probab=99.94 E-value=8.9e-28 Score=238.00 Aligned_cols=125 Identities=38% Similarity=0.618 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHH
Q psy880 136 EDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHI 215 (263)
Q Consensus 136 ~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~Vhi 215 (263)
.+|++++++++++++++..+++.++|.++||||||+|+++.|..+++++.+++++.|.+++.++++||+|+|||||+||+
T Consensus 128 ~~~l~y~~~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHi 207 (696)
T KOG0475|consen 128 VSYLIYVLWALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHI 207 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceee
Confidence 47999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 216 ASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 216 GA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
+.+||+.++++++. ...|+..+|++++|++|||||++||||||||
T Consensus 208 A~c~g~~~s~~f~~---~~~~e~~~reilsAaaAaGvavaFgAPIGGV 252 (696)
T KOG0475|consen 208 ATCIGNIFSKIFPK---YRLNEAKKREILSAAAAAGVAVAFGAPIGGV 252 (696)
T ss_pred eechhhhHhhhhhh---hccchhHHHHHHHHHhhccchhhcCCcccee
Confidence 99999999999875 3468889999999999999999999999997
No 9
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.91 E-value=2.3e-24 Score=205.86 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=113.1
Q ss_pred cccchHHHHHHHHHHHHHHhhhh---------cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccc
Q psy880 112 RGRCATKFAAVFRFVWKHTFAKL---------GEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKE 182 (263)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~---------~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~ 182 (263)
.|+.+..+...++|+.+..+... ..+|++.++++++++++..++.+.+. ..|+|||++++.+++. +
T Consensus 4 ~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~--~~g~gi~~v~~~~~~~---~ 78 (388)
T cd01033 4 AGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLR--RKGKKLVSIKQAVRGK---K 78 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHh--ccCCCcccHHHHhcCC---C
Confidence 34445555555666665554421 22355566777777777776655544 3699999999999875 3
Q ss_pred cchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccC
Q psy880 183 YLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 183 ~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaG 262 (263)
.+++++.+.|.+.+++++++|+|+|||||+||+|+++|++++|++++ ++.++|.+++||+|||+||+|||||+|
T Consensus 79 ~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~------~~~~~r~li~~GaaAGlaa~F~aPlaG 152 (388)
T cd01033 79 RMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL------TVADRRLLVACAAGAGLAAVYNVPLAG 152 (388)
T ss_pred CCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 58899999999999999999999999999999999999999999886 567899999999999999999999998
Q ss_pred C
Q psy880 263 T 263 (263)
Q Consensus 263 v 263 (263)
+
T Consensus 153 ~ 153 (388)
T cd01033 153 A 153 (388)
T ss_pred H
Confidence 4
No 10
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.91 E-value=3.1e-24 Score=207.10 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=115.8
Q ss_pred hcccchHHHHHHHHHHHHHHhhh-------------hcchHHHHHHHHHHHHHHHHHHHHhhhc--ccCCCChHHHHHHH
Q psy880 111 YRGRCATKFAAVFRFVWKHTFAK-------------LGEDWVFLALLGIIMATISFFMDRGINI--IGRSSGIPEMKTIL 175 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~w~~l~llgl~~ali~~~l~~~~~~--~~~GSGIpeV~~~L 175 (263)
..|..+|.+..+|+++.+..... ...+|++++++|+++++++.++.+.+.+ ..+++|++++++.+
T Consensus 10 ~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~~~vi~av 89 (418)
T PRK01610 10 VVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAPTDYMEAL 89 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCcHHHHHHH
Confidence 56777777777776665442110 0223456778888888877777666654 36789999999888
Q ss_pred hhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHH
Q psy880 176 RGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSC 255 (263)
Q Consensus 176 ~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAa 255 (263)
+. ++.+++|+.+.|++++++++++|+|+|||||+||+|+++|+.++|+++ ++.++|.+++||+|||+||+
T Consensus 90 ~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~-------~~~~~r~li~~GaaAGlaa~ 159 (418)
T PRK01610 90 QT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT-------PRQEWKLWIACGAAAGMASA 159 (418)
T ss_pred Hc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC-------ChHHHHHHHHHHHHHHHHHH
Confidence 75 267899999999999999999999999999999999999999999876 24578999999999999999
Q ss_pred hcCCccCC
Q psy880 256 FGAPIGAT 263 (263)
Q Consensus 256 F~APIaGv 263 (263)
|||||+|+
T Consensus 160 F~aPlaG~ 167 (418)
T PRK01610 160 YHAPLAGS 167 (418)
T ss_pred hCCchHHH
Confidence 99999985
No 11
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.9e-24 Score=206.69 Aligned_cols=118 Identities=29% Similarity=0.447 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHH
Q psy880 138 WVFLALLGIIMATISF-FMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIA 216 (263)
Q Consensus 138 w~~l~llgl~~ali~~-~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiG 216 (263)
++++++++.+++++.. ++.+.+.|+++|+|||++++.+++. ++.+++++.++|++++++++++|+|+|||||+||+|
T Consensus 63 ~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqig 140 (443)
T COG0038 63 PWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIG 140 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHH
Confidence 3445555555555444 6667788999999999999999986 367899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 217 SIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 217 A~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
+++|+.+++++++ ++.++|.+++||+|||+||+|||||||+
T Consensus 141 a~~g~~~~~~l~~------~~~~~r~Ll~~GaAaGlaaaF~aPlagv 181 (443)
T COG0038 141 AAIGSLLGRLLKL------SREDRRILLAAGAAAGLAAAFNAPLAGA 181 (443)
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 9999999999986 5778999999999999999999999985
No 12
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.91 E-value=9.6e-24 Score=209.84 Aligned_cols=146 Identities=20% Similarity=0.248 Sum_probs=115.6
Q ss_pred hhhcccchHHHHHHHHHHHHHHhhh-----------h-cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHH-HHHH
Q psy880 109 NKYRGRCATKFAAVFRFVWKHTFAK-----------L-GEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEM-KTIL 175 (263)
Q Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~-----------~-~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV-~~~L 175 (263)
.-+.|.++|.+..+|+++.+..... . ..+|+++++++++++++++++.+...+..++.|++++ +++.
T Consensus 28 ~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~~~~ 107 (574)
T PRK01862 28 SAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYMEAVA 107 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHHHH
Confidence 3467888888888887776553221 1 2357777888888888877777766665554555554 4444
Q ss_pred hhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHH
Q psy880 176 RGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSC 255 (263)
Q Consensus 176 ~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAa 255 (263)
++. +.+++++.+.|++++++++++|+|+|||||+||+||++|+.+++++++ ++.++|.|++||+|||+||+
T Consensus 108 ~~~---~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~------~~~~~r~l~~~G~aAglaa~ 178 (574)
T PRK01862 108 LGD---GVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF------DPPRLRLLVACGAAAGITSA 178 (574)
T ss_pred cCC---CCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHHH
Confidence 443 467899999999999999999999999999999999999999999875 45678999999999999999
Q ss_pred hcCCccCC
Q psy880 256 FGAPIGAT 263 (263)
Q Consensus 256 F~APIaGv 263 (263)
||||++|+
T Consensus 179 F~aPl~g~ 186 (574)
T PRK01862 179 YNAPIAGA 186 (574)
T ss_pred hCCchHHH
Confidence 99999985
No 13
>PRK05277 chloride channel protein; Provisional
Probab=99.90 E-value=2.4e-23 Score=201.23 Aligned_cols=116 Identities=29% Similarity=0.527 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHH
Q psy880 141 LALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVA 220 (263)
Q Consensus 141 l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~ig 220 (263)
.++++++.+++++++.+++.|.++|+|||+|++.+++.. ....+++++.|++++++++++|+|+|||||++|+|+++|
T Consensus 47 ~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l~~~~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig 124 (438)
T PRK05277 47 AFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGALEGLR--PVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIG 124 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCC--ccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Confidence 345566667788888888899999999999999998764 223478899999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 221 TLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 221 s~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
+.+++++++ .++.++|++++||+|||++++|||||+|+
T Consensus 125 ~~~~~~~~~-----~~~~~~~~li~~G~aaglaa~f~APl~g~ 162 (438)
T PRK05277 125 RMVLDIFRL-----RSDEARHTLLAAGAAAGLAAAFNAPLAGI 162 (438)
T ss_pred HHHHHHccc-----CCHHHHHHHHHHHHHHhHHHhcCCchHHH
Confidence 999998874 14567899999999999999999999985
No 14
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.90 E-value=2.9e-23 Score=198.38 Aligned_cols=118 Identities=27% Similarity=0.508 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHH
Q psy880 138 WVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIAS 217 (263)
Q Consensus 138 w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA 217 (263)
|+++++++++++++++++.+++.|.++|+|+|+++..+++.. ..+++++++.|++++++++++|+|+|||||++|+|+
T Consensus 37 ~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga 114 (402)
T cd01031 37 LLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGA 114 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHH
Confidence 444556677777777777777889999999999999999864 457899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 218 IVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 218 ~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
++|+.++++++. ++.++|.+++||+|||++++||||++|+
T Consensus 115 ~ig~~~~~~~~~------~~~~~~~l~~~g~aag~aa~f~aPl~g~ 154 (402)
T cd01031 115 AIGQGVSKWFKT------SPEERRQLIAAGAAAGLAAAFNAPLAGV 154 (402)
T ss_pred HHHHHHHHHhcC------CHHHHHHHHHHHHHHhHHHHhCCccHHH
Confidence 999999998875 5667999999999999999999999984
No 15
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.89 E-value=3.1e-23 Score=195.38 Aligned_cols=109 Identities=33% Similarity=0.529 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHh
Q psy880 148 MATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLV 227 (263)
Q Consensus 148 ~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~ 227 (263)
+++++.++.+++.|.++|+|||+++..+++.. +.+++|+.+.|++++++++++|+|+|||||++|+|+++|+.++|++
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~--~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~ 79 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS--GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRF 79 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhh
Confidence 45677777788889999999999999999875 4599999999999999999999999999999999999999999998
Q ss_pred hhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 228 TSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 228 ~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
++ ..++++|.+++||+|||+|++|||||+|+
T Consensus 80 ~~-----~~~~~~r~l~~~g~aAglaa~F~aPlaG~ 110 (355)
T PF00654_consen 80 RL-----SRNETRRLLLAAGAAAGLAAAFNAPLAGV 110 (355)
T ss_dssp T-------CHHHHHHHHHHHHHHHHHHHHT-HHHHH
T ss_pred cc-----cchHHHhHHHHHHHHHHHHHHhcCCcccc
Confidence 76 13333778999999999999999999984
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.87 E-value=8.8e-22 Score=186.51 Aligned_cols=143 Identities=23% Similarity=0.393 Sum_probs=115.5
Q ss_pred cccchHHHHHHHHHHHHHHhhhh-------cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccc
Q psy880 112 RGRCATKFAAVFRFVWKHTFAKL-------GEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYL 184 (263)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~-------~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l 184 (263)
+|..+..+..+..++.+...... ..+|+++.+++++++++.+++.+...+ ..|+|+++++..+++.. +.+
T Consensus 4 ~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~~--~~~ 80 (383)
T cd00400 4 SGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALGG--GRL 80 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhCC--CCC
Confidence 34444555555555554433321 234667778888888888888777666 78999999999888643 467
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 185 TFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 185 ~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
++++++.|++++++++++|+|+|+|||++|+|+++|+.++++++. ++.+++.+++||+|||++++||||++|+
T Consensus 81 ~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~------~~~~~~~l~~~G~aaglaa~f~aPl~g~ 153 (383)
T cd00400 81 PLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL------SRNDRRILVACGAAAGIAAAFNAPLAGA 153 (383)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 899999999999999999999999999999999999999998875 5567899999999999999999999984
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.86 E-value=4.1e-21 Score=182.73 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=110.6
Q ss_pred hcccchHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHHHH
Q psy880 111 YRGRCATKFAAVFRFVWKHTFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNTLV 190 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~ 190 (263)
..|.++|.+...|+++..........++++..++++++.++++++ +++.+. .++|+++++..+++.. +.++++..+
T Consensus 4 ~iGii~G~~~~~f~~~i~~~~~~~~~~~~~~~~~p~~g~~i~~l~-~~~~~~-~~~g~~~v~~~~~~~~--~~~~~~~~~ 79 (378)
T cd03682 4 LIGLLVGSASALFLWSLDWATEFREAHPWLLPFLPLAGLLIGYLY-QKFGKN-SEKGNNLIIEEIHGPE--EGIPLRMAP 79 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCcc-cCCChHHHHHHHHccC--CCCchHHHH
Confidence 356666666666666555443322223334455677766666655 444443 5789999998888643 568899999
Q ss_pred HHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 191 AKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 191 ~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
.|++++.+++++|+|+|||||++|+|+++|++++++++. ++.++|.+++||+|||++++||||++|+
T Consensus 80 ~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~------~~~~~r~l~~~g~aAglaa~f~aPl~g~ 146 (378)
T cd03682 80 LVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL------PEEDRRILLIAGIAAGFAAVFGTPLAGA 146 (378)
T ss_pred HHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999999999999999999999999999999999998875 4557889999999999999999999984
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=175.26 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=102.6
Q ss_pred hcccchHHHHHHHHHHHHHHhhhh-----------cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhcc
Q psy880 111 YRGRCATKFAAVFRFVWKHTFAKL-----------GEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVA 179 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~ 179 (263)
..|.++|.+..+|+++.+.....+ ..+|++.++++++++++..++.++. +...|+ .|+++....+
T Consensus 18 lvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~-~~~~G~-~~~~~~~~~~-- 93 (414)
T PRK03655 18 AIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFS-PGHAGP-DPATEPLIGA-- 93 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHc-CCCCCC-hHHHHHHhcC--
Confidence 577777877777777765432211 1223344455666667666665543 444555 5666555322
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 180 LKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 180 ~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
.++.+....|++++++++++|+|+|||||+||+||+++++++|++.. ..++++++.||+|||+||+||||
T Consensus 94 ---~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~-------~~~~~~l~~~gaAaGiaAaFnaP 163 (414)
T PRK03655 94 ---PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLP-------RVNRMDWTILASAGTIGALFGTP 163 (414)
T ss_pred ---CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc-------CCChhHHHHHHHHHHHHHHhCch
Confidence 45678899999999999999999999999999999999999998742 23567789999999999999999
Q ss_pred ccCC
Q psy880 260 IGAT 263 (263)
Q Consensus 260 IaGv 263 (263)
++|+
T Consensus 164 LaG~ 167 (414)
T PRK03655 164 VAAA 167 (414)
T ss_pred HHHH
Confidence 9984
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.46 E-value=6e-13 Score=127.25 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=80.6
Q ss_pred hcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcch
Q psy880 160 NIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESR 239 (263)
Q Consensus 160 ~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~ 239 (263)
.+..-|+|.++++..+++.. .+++..++.|++.+++|+++|.|.|+|+|++++||++|..++++++. .+
T Consensus 261 ~~~~~G~G~~~i~~~~~~~~---~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~--------~~ 329 (390)
T cd01034 261 GGLTFGTGYLQARAALEGGG---GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS--------VS 329 (390)
T ss_pred CCccccCcHHHHHHHHhCCC---cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC--------CC
Confidence 34567999999998887643 35677889999999999999999999999999999999999997642 24
Q ss_pred hhHHHHHHHHHHHHHHhcCCccCC
Q psy880 240 NSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 240 ~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
...+++||+||++|++++||++++
T Consensus 330 ~~~~a~~G~aA~laa~~~aPlt~~ 353 (390)
T cd01034 330 QGALVLLGMAAFLAGVTQAPLTAF 353 (390)
T ss_pred chHHHHHHHHHHHHHHHcccHHHH
Confidence 688999999999999999999863
No 20
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.41 E-value=1.8e-12 Score=124.18 Aligned_cols=144 Identities=16% Similarity=0.078 Sum_probs=99.3
Q ss_pred hcccchHHHHHHHHHHHHHHhhhhc--chHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHH
Q psy880 111 YRGRCATKFAAVFRFVWKHTFAKLG--EDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNT 188 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~ 188 (263)
..|.++|.+-..|.++......... ..+++. +.+.+++..++.. +.|+..|+|.+.+...+++..... .-+..
T Consensus 210 llGi~~Gl~~~lf~~~~~~~~~~~~~~~~~~~~---~~l~gl~~g~~~~-~~p~~~G~G~~~i~~~~~~~~~~~-~ll~~ 284 (388)
T cd01033 210 LAGPVLGVVAAGFRRLSQAARAKRPKGKRILWQ---MPLAFLVIGLLSI-FFPQILGNGRALAQLAFSTTLTLS-LLLIL 284 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHH---HHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHcCCchHH-HHHHH
Confidence 3566666666666555443322211 112121 1222222222222 346678999998888777643212 23677
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 189 LVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 189 l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
++.|++.+.+|+++|.|.|.++|++++|+++|..++++++.+. + +.+...++.||+||.+++++||||+++
T Consensus 285 ~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~---p-~~~~~~~a~~GmaA~laa~~~aPlt~i 355 (388)
T cd01033 285 LVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALL---P-PLSIAAFALIGAAAFLAATQKAPLTAL 355 (388)
T ss_pred HHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhC---C-cccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8999999999999999999999999999999999999887532 1 234578999999999999999999864
No 21
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.37 E-value=4.2e-12 Score=120.58 Aligned_cols=146 Identities=17% Similarity=0.123 Sum_probs=101.8
Q ss_pred hcccchHHHHHHHHHHHHHHhh---hhcchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhH
Q psy880 111 YRGRCATKFAAVFRFVWKHTFA---KLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFN 187 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~---~~~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r 187 (263)
..|..+|.+-.+|.++.+.... +...++++.. ++.+++..++.+ +.|+..|+|.+++...+++.. .-..-+.
T Consensus 211 l~Gv~~g~~g~~f~~~~~~~~~~~~~~~~~~~~~~---~i~gll~~~~~~-~~p~~~g~G~~~~~~~~~~~~-~~~~l~~ 285 (383)
T cd00400 211 LLGLLAGLVGVLFVRLLYKIERLFRRLPIPPWLRP---ALGGLLLGLLGL-FLPQVLGSGYGAILLALAGEL-SLLLLLL 285 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHH---HHHHHHHHHHHH-HHHHHHcCcHHHHHHHHcCCh-hHHHHHH
Confidence 4566666666666665444322 2223333332 333333333333 347778999999887766542 1112245
Q ss_pred HHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 188 TLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 188 ~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
.++.|++.+.+++++|.+.|+++|++.+|+.+|..++++++.+.+ .++.+...+++||+||++++++|+|++++
T Consensus 286 ~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~--~~~~~~~~~~~~G~aa~la~~~~aPlt~~ 359 (383)
T cd00400 286 LLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFP--GLVASPGAYALVGMAALLAAVLRAPLTAI 359 (383)
T ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCC--cccCChHHHHHHHHHHHHHHHhCchHHHH
Confidence 788999999999999999999999999999999999999875321 12345789999999999999999999863
No 22
>PRK05277 chloride channel protein; Provisional
Probab=99.34 E-value=8.9e-12 Score=120.86 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=101.5
Q ss_pred hcccchHHHHHHHHHHHHHH---hhhhcch-HHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchh
Q psy880 111 YRGRCATKFAAVFRFVWKHT---FAKLGED-WVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTF 186 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~---~~~~~~~-w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~ 186 (263)
..|.++|.+-.+|.++.... +.+...+ +..+++.+.+.+++..++. .+.|+..|+|.+.+...+++.. .-..-+
T Consensus 222 ~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~-~~~p~~~g~G~~~i~~~~~~~~-~~~~l~ 299 (438)
T PRK05277 222 LLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLG-LLAPAAVGGGFNLIPIALAGNF-SIGMLL 299 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHhhhhcCChHHHHHHHHcCCc-hHHHHH
Confidence 45666666666665554332 2222222 2222223333333333333 3457889999999998887642 111224
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
..++.|++.+.+++++|.+.|.++|++++||++|..++.+++.+.+ .+..+...++.+|+||+++++|+|||+++
T Consensus 300 ~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p--~~~~~~~~~a~~G~aA~la~~~~aPlt~~ 374 (438)
T PRK05277 300 FIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFP--QYHIEPGTFAIAGMGALFAATVRAPLTGI 374 (438)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC--cccccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4679999999999999999999999999999999999988764321 12234678899999999999999999863
No 23
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.25 E-value=6.3e-11 Score=118.38 Aligned_cols=145 Identities=23% Similarity=0.164 Sum_probs=96.4
Q ss_pred hcccchHHHHHHHHHHHHHH---hhhhcchHH-HHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchh
Q psy880 111 YRGRCATKFAAVFRFVWKHT---FAKLGEDWV-FLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTF 186 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~---~~~~~~~w~-~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~ 186 (263)
..|.+||.+-.+|.++.... +.+...+++ ..++.+++.+++++ +.|+..|.|.+.+...+++... -..-+
T Consensus 244 ~lGv~~G~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~gl~~g~l~~-----~~p~~~g~G~~~i~~~~~~~~~-~~~l~ 317 (574)
T PRK01862 244 ALGVLCGAAAPQFLRLLDASKNQFKRLPVPLPVRLALGGLLVGVISV-----WVPEVWGNGYSVVNTILHAPWT-WQALV 317 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH-----HHHHHhcCCHHHHHHHHcCCch-HHHHH
Confidence 35666666655555443322 332322222 22223333333322 2467789999999888776421 11124
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
..++.|++.+.+|+++|.|.|.++|++.+||++|..++.+++.+.+.. ....-.+..+|+||.+|++++||++++
T Consensus 318 ~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~--~~~~~~~a~vGmaa~~aa~~~aPlt~i 392 (574)
T PRK01862 318 AVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGH--TSAPFAYAMVGMGAFLAGATQAPLMAI 392 (574)
T ss_pred HHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCc--ccchHHHHHHHHHHHHHHHHccHHHHH
Confidence 456899999999999999999999999999999999999887532211 112234788999999999999999864
No 24
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.20 E-value=1.6e-10 Score=110.23 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=93.6
Q ss_pred hcccchHHHHHHHHHHHHHH---hhhh-cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchh
Q psy880 111 YRGRCATKFAAVFRFVWKHT---FAKL-GEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTF 186 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~---~~~~-~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~ 186 (263)
..|.++|.+-.+|.++.+.. +.+. ...|+..++.+++.+++.+++. .+...|.|.+.+...+.+. ..++
T Consensus 205 ~~Gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~~---~~~~~G~g~~~i~~~~~~~----~~~~ 277 (378)
T cd03682 205 LAGIIFGLAGRLFAELLHFLKKLLKKRIKNPYLRPFVGGLLIILLVYLLG---SRRYLGLGTPLIEDSFFGG----TVYP 277 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc---CCccccCCHHHHHHHHhcC----CchH
Confidence 35566666555554443332 2122 2334433334444444333221 2334688888887633322 2456
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
..++.|++.+.+|+++|.+.|.+.|++.+|+++|..++++++. + ...++.||+||.+++++|||++++
T Consensus 278 ~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~~------~---~~~~~~~Gmaa~laa~~raPlt~i 345 (378)
T cd03682 278 YDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILGL------P---VSLLAALGFVAVFAGATNTPLACI 345 (378)
T ss_pred HHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHCC------C---HHHHHHHHHHHHHHHHhcchHHHH
Confidence 6789999999999999999999999999999999999998753 1 347889999999999999999863
No 25
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.18 E-value=2.1e-10 Score=111.29 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=94.5
Q ss_pred hcccchHHHHHHHHHHHHHH---hhhhcc-hHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchh
Q psy880 111 YRGRCATKFAAVFRFVWKHT---FAKLGE-DWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTF 186 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~---~~~~~~-~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~ 186 (263)
..|.++|.+-..|.++.... +.+... .|+...+.+++.++++ ..+ |+..|.|.+.+...+++... -.+-+
T Consensus 226 ~lGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~lggli~g~l~----~~~-p~~~G~G~~~i~~~~~~~~~-~~~l~ 299 (418)
T PRK01610 226 STGLLAGLCGPLLLTLMNASHRGFVSLKLAPPWQLALGGLIVGLLS----LFT-PAVWGNGYSVVQSFLTAPPL-LMLIA 299 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHH----HHh-hHHhCCcHHHHHHHHcCChh-HHHHH
Confidence 35666666655555543322 222322 2322223333333333 222 66779999998877765321 01112
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcch-hhHHHHHHHHHHHHHHhcCCccCC
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESR-NSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~-~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
-.++.|++.+.+|+++|.+.|.+.|++.+|+++|+.+++++..+. ++... .-.+..+|+||.+++++||||+++
T Consensus 300 ~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~~~~a~vGmaA~laa~~~aPltai 374 (418)
T PRK01610 300 GIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWL---PDGEEITLLLGLTGMATLLAATTHAPIMST 374 (418)
T ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhC---CCcccchHHHHHHHHHHHHHHHHccHHHHH
Confidence 235789999999999999999999999999999999999887431 22222 334556999999999999999863
No 26
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.00 E-value=3.1e-09 Score=101.93 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=96.5
Q ss_pred hcccchHHHHHHHHHHHHHH---hhhh--cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccch
Q psy880 111 YRGRCATKFAAVFRFVWKHT---FAKL--GEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLT 185 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~---~~~~--~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~ 185 (263)
..|.++|.+-..|.++.... +.+. ...|+..++.+++.+++.++ .|+..|.|-+.+...+++.. .-..-
T Consensus 212 llGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~~~~~~~-----~p~~~g~G~~~i~~~~~~~~-~~~~l 285 (402)
T cd01031 212 LLGIIAGLLGYLFNRSLLKSQDLYRKLKKLPRELRVLLPGLLIGPLGLL-----LPEALGGGHGLILSLAGGNF-SISLL 285 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHH-----HHHHhCCHHHHHHHHHcCCc-hHHHH
Confidence 35555555555554443222 2222 22344444444444444433 46667888777766665532 11112
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccC
Q psy880 186 FNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 186 ~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaG 262 (263)
+..++.|++.+.+++++|.+.|...|++.+|+++|..+++++..+.+ .+..+...+..+|+||.+++++++|+++
T Consensus 286 ~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~--~~~~~~~~~a~~G~aa~~a~~~~aPlta 360 (402)
T cd01031 286 LLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGP--IPISAPATFAIAGMAAFFAAVVRAPITA 360 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34567999999999999999999999999999999999998874321 1233567899999999999999999975
No 27
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.49 E-value=1.8e-06 Score=84.69 Aligned_cols=147 Identities=14% Similarity=0.059 Sum_probs=97.7
Q ss_pred hcccchHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccc-hhHHH
Q psy880 111 YRGRCATKFAAVFRFVWKHTFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYL-TFNTL 189 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l-~~r~l 189 (263)
..|.++|.+-.++.++....-......++-..+.++++.++.+.+.. +.|+..|.|...+...+++.. ... ..-.+
T Consensus 240 ~lGii~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~l-~~P~~lg~G~~~~~~~~~~~~--~~~~l~~l~ 316 (443)
T COG0038 240 VLGIIAGLFGVLLSRLLALSRRFFRRLPLPPLLRPALGGLLVGALGL-LFPEVLGNGYGLIQLALAGEG--GLLVLLLLF 316 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-hchhhhCCCccHHHHHHccCc--cHHHHHHHH
Confidence 45666666654444333211111112222233344444444444433 346777888777776666643 222 35678
Q ss_pred HHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccC
Q psy880 190 VAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 190 ~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaG 262 (263)
+.|++.++++++||.+.|.--|++-+|+++|..++..+..... .+....-.+..+|++|-++++-|+|+++
T Consensus 317 ~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~--~~~~~~~~~al~Gm~a~la~~~~aPlta 387 (443)
T COG0038 317 LLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFP--PSILEPGLFALLGMAAFLAATTRAPLTA 387 (443)
T ss_pred HHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcC--ccccchHHHHHHHHHHHHHHHhcccHHH
Confidence 9999999999999999999999999999999999998775321 1122345788999999999999999975
No 28
>PRK03655 putative ion channel protein; Provisional
Probab=98.40 E-value=3.6e-06 Score=81.99 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=90.0
Q ss_pred cccchHHHHHHHHHHHHH---HhhhhcchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchhHH
Q psy880 112 RGRCATKFAAVFRFVWKH---TFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTFNT 188 (263)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~---~~~~~~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~ 188 (263)
+|+.++.+-..|.++... .+.+...++++..+.+++.+++++ ...+..-|+|-.++...+.+....-..-.-.
T Consensus 229 lgi~~gl~G~lf~~~~~~~~~~~~~~~~p~~~~~lgGl~vg~l~l----~~~~~~~g~Gy~~i~~~~~~~~~~~~~ll~l 304 (414)
T PRK03655 229 VAAIAIAAGMVAVWCLPRLHALMHRLKNPVLVLGIGGFILGILGV----IGGPLTLFKGLDEMQQMAANQAFSASDYFLL 304 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH----HhCCccccCCHHHHHHHHhcCCccHHHHHHH
Confidence 445455444444443222 233333344444444544444442 2345567999999988776632111111124
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcC
Q psy880 189 LVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGA 258 (263)
Q Consensus 189 l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~A 258 (263)
++.|++.+.+|++||.+.|.-.|+.-+|+.+|..+++++.. ......++|+++|-++++-++
T Consensus 305 ~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p~--------~~~~~~v~~~m~a~la~vtr~ 366 (414)
T PRK03655 305 AVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVPA--------VPAAITVSCAILGIVLVVTRD 366 (414)
T ss_pred HHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhccC--------CChHHHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999997631 234667899999999999995
No 29
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.37 E-value=2.5e-06 Score=80.76 Aligned_cols=146 Identities=20% Similarity=0.146 Sum_probs=93.3
Q ss_pred hcccchHHHHHHHHHHHHHH---hhhh---cc-hHHHHHHHHHHHHHHHHHHHHhhhcc--cCCCChHHHHHHHhhccc-
Q psy880 111 YRGRCATKFAAVFRFVWKHT---FAKL---GE-DWVFLALLGIIMATISFFMDRGINII--GRSSGIPEMKTILRGVAL- 180 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~---~~~~---~~-~w~~l~llgl~~ali~~~l~~~~~~~--~~GSGIpeV~~~L~g~~~- 180 (263)
..|.++|.+-.+|.++.... +.+. .. .|+ .+++.+++...+... .|+ .-|.|-..+...+++...
T Consensus 169 llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~l----~~~i~gl~~g~l~~~-~p~~~~~g~G~~~i~~ll~~~~~~ 243 (355)
T PF00654_consen 169 LLGIICGLLGALFNRLLRWLRKFFRKLKRLKIPPIL----RPVIGGLVIGLLAFF-FPEGSVLGSGYELIQSLLSGSPPW 243 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHHHHHHHS-SGG-SGSSSSTTHHHHHCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH----HHHHHHHHHHHHHHH-HhhhcccCCcHHHHHHHHcCCcch
Confidence 35666666555554443332 2222 11 123 333333333333332 355 789999999888876411
Q ss_pred -cccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 181 -KEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 181 -~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
.-..-.-.++.|++.+.+++++|.+.|.-.|++-+|+++|..++.++..+..-. ...+...+..+|++|-++++.++|
T Consensus 244 ~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~-~~~~~~~~al~G~~a~~~a~~~~P 322 (355)
T PF00654_consen 244 FSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGI-SSVDPGVYALVGMAAFLAAVTRAP 322 (355)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG--T-SHHHHHHHHTTHHHHHHCS-H
T ss_pred hhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCc-CCCchHHHHHHHHHHHHHHHHHhH
Confidence 111223346899999999999999999999999999999999999988642100 011357788999999999999999
Q ss_pred ccC
Q psy880 260 IGA 262 (263)
Q Consensus 260 IaG 262 (263)
++.
T Consensus 323 lt~ 325 (355)
T PF00654_consen 323 LTA 325 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 30
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.20 E-value=2.1e-05 Score=77.10 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccC------------CcchhhHHHHHHHHHHHHHH
Q psy880 188 TLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYE------------NESRNSEMLAAACAVGVGSC 255 (263)
Q Consensus 188 ~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~------------n~~~~r~LlaaGaAAGvAAa 255 (263)
.++.|++.+.+++++|.+.|.-.|+.-+||++|..++.++..+...++ ...+.-.+..+|+||-++++
T Consensus 310 ~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~ 389 (445)
T cd03684 310 ALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGV 389 (445)
T ss_pred HHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcch
Confidence 468999999999999999999999999999999999998764321111 01223568899999999999
Q ss_pred hcCCccCC
Q psy880 256 FGAPIGAT 263 (263)
Q Consensus 256 F~APIaGv 263 (263)
.++|+.++
T Consensus 390 ~raPlt~i 397 (445)
T cd03684 390 TRMTVSLV 397 (445)
T ss_pred hccchhhh
Confidence 99999864
No 31
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=97.93 E-value=0.00012 Score=72.22 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccCC
Q psy880 188 TLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGAT 263 (263)
Q Consensus 188 ~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaGv 263 (263)
.++.|++.+.+|+++|.+.|.-.|+.-+||++|..++.++..+.+. ...+--....+|+||=++++.++|+.++
T Consensus 339 ~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~--~~~~~~~~aliGmaa~lag~~raPlt~i 412 (466)
T cd03685 339 FFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGF--TSIDPGLYALLGAAAFLGGVMRMTVSLT 412 (466)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccc--cCCCchHHHHHHHHHHHhHHhhhhHHHH
Confidence 4468999999999999999999999999999999999987653211 1223467889999999999999999763
No 32
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=97.89 E-value=0.00012 Score=71.07 Aligned_cols=77 Identities=14% Similarity=0.039 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhcccc------CCcchhhHHHHHHHHHHHHHHhcCCc
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIY------ENESRNSEMLAAACAVGVGSCFGAPI 260 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~------~n~~~~r~LlaaGaAAGvAAaF~API 260 (263)
-.++.|++.+.+|+++|.+.|.--|+.-+||++|..++.++..+.+.. ....+-..+..+|+||-++++.++|+
T Consensus 298 ~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Pl 377 (416)
T cd01036 298 LFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTF 377 (416)
T ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchH
Confidence 356799999999999999999999999999999999999876532210 01123467889999999999999999
Q ss_pred cCC
Q psy880 261 GAT 263 (263)
Q Consensus 261 aGv 263 (263)
..+
T Consensus 378 t~~ 380 (416)
T cd01036 378 SIC 380 (416)
T ss_pred hhh
Confidence 753
No 33
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=97.45 E-value=0.0013 Score=64.26 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccc---c--CCcchhhHHHHHHHHHHHHHHhcCCcc
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGI---Y--ENESRNSEMLAAACAVGVGSCFGAPIG 261 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~---~--~n~~~~r~LlaaGaAAGvAAaF~APIa 261 (263)
-.++.|++.+.+|+++|.+.|.-.|+.-+||++|..++..+..+.+. + ....+.-....+|+||-++++.++|+.
T Consensus 297 ~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t 376 (426)
T cd03683 297 LFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSV 376 (426)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHH
Confidence 34679999999999999999999999999999999999877653210 0 011234668889999999999999876
Q ss_pred C
Q psy880 262 A 262 (263)
Q Consensus 262 G 262 (263)
.
T Consensus 377 ~ 377 (426)
T cd03683 377 A 377 (426)
T ss_pred H
Confidence 4
No 34
>KOG0475|consensus
Probab=90.51 E-value=1.8 Score=44.90 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhcc------ccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 186 FNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQG------IYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 186 ~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~------~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
+..++.|++.+++|-|++.|.|.--|+.-+||+.|..+|-....+-. ...+=..-...-..|+||-++.+-+-|
T Consensus 403 ~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrlt 482 (696)
T KOG0475|consen 403 LLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRLT 482 (696)
T ss_pred HHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcceee
Confidence 45667999999999999999999999999999999998854332110 000111123344567777777666655
Q ss_pred cc
Q psy880 260 IG 261 (263)
Q Consensus 260 Ia 261 (263)
++
T Consensus 483 vt 484 (696)
T KOG0475|consen 483 VT 484 (696)
T ss_pred EE
Confidence 43
No 35
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=60.20 E-value=13 Score=22.71 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcc
Q psy880 239 RNSEMLAAACAVGVGSCFGAPIG 261 (263)
Q Consensus 239 ~~r~LlaaGaAAGvAAaF~APIa 261 (263)
.||.+|-.+++++.++++..+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 48899999999999999988765
No 36
>KOG4327|consensus
Probab=56.45 E-value=10 Score=34.31 Aligned_cols=46 Identities=30% Similarity=0.280 Sum_probs=27.5
Q ss_pred ccccccccccCCCCCC---CCCCccc-cccccC----CcccccccchhhhhHHHH
Q psy880 43 HQTQSQSFYPCPPPAN---LGESDEL-QEYDAS----PGMYGRYTKELGEFAKEE 89 (263)
Q Consensus 43 ~~~~~~~~~~~p~~~~---~~~~d~~-~~~~~~----~~myg~y~~~~~~~~~~~ 89 (263)
++..-++|-|.|||-+ ++.++|+ ..+- . -.|-|-||.--..+|+.+
T Consensus 161 ~s~p~~sfmpppPP~pp~i~p~~~de~~a~~-sMLmSWYmSGYhTGyyqGla~~~ 214 (218)
T KOG4327|consen 161 KSAPWNSFMPPPPPMPPPICPDSLDEADALG-SMLMSWYMSGYHTGYYQGLAKSE 214 (218)
T ss_pred ccCCccccCCCCCCCCcccCCCCchHHHHHH-HHHHHHHHhhhhHHHHHHHHhhh
Confidence 4555789999999863 3555443 2222 2 227788887555555543
No 37
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=54.66 E-value=65 Score=27.72 Aligned_cols=11 Identities=36% Similarity=1.060 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q psy880 136 EDWVFLALLGI 146 (263)
Q Consensus 136 ~~w~~l~llgl 146 (263)
..|++++.+++
T Consensus 135 ~~~l~~~~~~~ 145 (157)
T PF14235_consen 135 KKWLWYASLGL 145 (157)
T ss_pred hHHHHHHHHHH
Confidence 34655554443
No 38
>KOG0474|consensus
Probab=36.76 E-value=5.6e+02 Score=27.47 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=46.6
Q ss_pred cchhHHH-HHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHH
Q psy880 183 YLTFNTL-VAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGS 254 (263)
Q Consensus 183 ~l~~r~l-~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAA 254 (263)
..++..+ +..++.+++|-|--.|.|.-=|.+-+||+-|-+++..+..+. .-+.-.....||||=++.
T Consensus 449 ~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~-----~id~G~yAllGAAa~LGG 516 (762)
T KOG0474|consen 449 ILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYT-----NIDPGLYALLGAAAFLGG 516 (762)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhh-----ccCchHHHHHhHHHHhCC
Confidence 3444443 455667777888888999999999999999999998876532 223344555677765543
No 39
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=33.83 E-value=45 Score=22.63 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=10.6
Q ss_pred chhhHH-HHHHHHHHHHHHh
Q psy880 238 SRNSEM-LAAACAVGVGSCF 256 (263)
Q Consensus 238 ~~~r~L-laaGaAAGvAAaF 256 (263)
.+|+.| ++.++.+++++++
T Consensus 10 ~RRdFL~~at~~~gavG~~~ 29 (41)
T PF10399_consen 10 TRRDFLTIATSAVGAVGAAA 29 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 334434 4666666666654
No 40
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=33.53 E-value=1.8e+02 Score=26.75 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.3
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhh
Q psy880 134 LGEDWVFLALLGIIMATISFFMDRGIN 160 (263)
Q Consensus 134 ~~~~w~~l~llgl~~ali~~~l~~~~~ 160 (263)
++.+|++.++++++.+++.+.+++.+-
T Consensus 41 ~~~~~~~ai~~glvwgl~I~~lDR~iv 67 (301)
T PF14362_consen 41 FGGPVWAAIPFGLVWGLVIFNLDRFIV 67 (301)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777889999999999998764
No 41
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=31.40 E-value=2.2e+02 Score=23.23 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHhh
Q psy880 81 ELGEFAKEEAKKLN 94 (263)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (263)
+-|.+|++|+.+++
T Consensus 30 ssg~~a~~e~~~lR 43 (104)
T COG4575 30 SSGSLAGDEAEELR 43 (104)
T ss_pred hcccchhhHHHHHH
Confidence 34778999998883
No 42
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=29.68 E-value=5.1e+02 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=14.9
Q ss_pred CcccccccchhhhhHHHHHH
Q psy880 72 PGMYGRYTKELGEFAKEEAK 91 (263)
Q Consensus 72 ~~myg~y~~~~~~~~~~~~~ 91 (263)
+.-|-.|.+|+.+|+.|--+
T Consensus 37 ~~~y~~~~~d~~~~~~eg~r 56 (299)
T PF05884_consen 37 TRTYSNYGQDLQQYYAEGLR 56 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45789999999997654433
No 43
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=28.58 E-value=95 Score=29.25 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=29.4
Q ss_pred hcccchHHHHHHHHHH--HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHhhh
Q psy880 111 YRGRCATKFAAVFRFV--WKHTFAKLGEDWVFLALLGIIMATISFFMDRGIN 160 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~--~~~~~~~~~~~w~~l~llgl~~ali~~~l~~~~~ 160 (263)
+-|-.+|++..+..|+ |+.++......|.- +.|++..++..++++.+.
T Consensus 224 ~GGP~TGl~FGliVFl~~Wrtv~~~~~gg~~~--i~Gliiv~~l~i~nr~iE 273 (283)
T TIGR01113 224 YGGPLTGLAFGLIVFLSSWTTTIFDQQGLVIG--IAGLIIVLILIIYNRKIE 273 (283)
T ss_pred hCCcccchhhhhHHHHHhHHHHHHhhcchHHH--HhHHHHHHHHHHHHHHHH
Confidence 4566667777666665 66665544344654 666666666666666553
No 44
>PF08358 Flexi_CP_N: Carlavirus coat; InterPro: IPR013569 This domain is found together with the viral coat protein domain (IPR000052 from INTERPRO) in coat/capsid proteins of the plant infecting Carlavirus. It is required for genome encapsidation by forming ribonucleoprotein complexes along with TGB1 helicase and viral RNA. The N- and the C terminus of this coat protein can be exposed on the surface of the virus particle. The central core sequence may be important in maintaining correct tertiary structure of the coat protein and/or play a role in the interaction with the viral RNA. Coat proteins are often used to distinguish between Carlavirus isolates. In the coat protein amino acid sequences of definitive and tentative species of carlaviruses, there is a region of seven amino acids (GLGVPTE) that are conserved []. The complete coat protein (CP) sequences of 29 Indian Chrysanthemum virus B (CVB) isolates were highly heterogeneous, sharing nucleotide sequence identities of 74-98% [, ].
Probab=28.22 E-value=94 Score=22.22 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcccc---CCCccccc
Q psy880 15 FDKLMTEYKRRRMHV---TASPLLHR 37 (263)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~s~~~~~ 37 (263)
|+++.+-++++++.. |.+|+.-+
T Consensus 2 l~~L~e~l~~~~~~~~v~N~~fE~GR 27 (52)
T PF08358_consen 2 LDKLKEFLRKNRTASNVTNPGFEIGR 27 (52)
T ss_pred HHHHHHHHHhcccCCcccccccccCC
Confidence 788888887776553 56666544
No 45
>PRK11677 hypothetical protein; Provisional
Probab=27.38 E-value=71 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q psy880 138 WVFLALLGIIMATISFFMDRGINI 161 (263)
Q Consensus 138 w~~l~llgl~~ali~~~l~~~~~~ 161 (263)
|++.++.-+++++|++++.++..+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 766655556667788888776543
No 46
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=25.85 E-value=50 Score=28.46 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=44.3
Q ss_pred CChhhHHHHHHHHHH----HhhccccCCCcccccccCCcccccccccccCCCCCCCCCCccccccccCCcccccccchh-
Q psy880 8 LDTEWEDFDKLMTEY----KRRRMHVTASPLLHRRHSSKHQTQSQSFYPCPPPANLGESDELQEYDASPGMYGRYTKEL- 82 (263)
Q Consensus 8 v~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~myg~y~~~~- 82 (263)
.|.+-.-|+|-++++ -+--.+|++.++-.. -..+|+-+.|-|-+...- +++.+++..++||+.|-...
T Consensus 47 ~d~~~~RFdK~lEeFysiCDQIEl~L~ta~ec~~-----Q~~~S~rylP~~V~~~~~--~~~~~~~~~~l~Y~qyl~tV~ 119 (148)
T PF11568_consen 47 SDEPVPRFDKNLEEFYSICDQIELHLKTAIECLS-----QLSSSQRYLPGPVMPNRV--DKNTTIQTEQLSYPQYLNTVR 119 (148)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhcccCCCccccccC--CCCCcccccccCchhHHHHHH
Confidence 455555666665555 111223344444444 222355566666554221 55566655789999996544
Q ss_pred --hhhHHHHHHHh
Q psy880 83 --GEFAKEEAKKL 93 (263)
Q Consensus 83 --~~~~~~~~~~~ 93 (263)
-+|||+-...|
T Consensus 120 sqv~~ak~ihd~L 132 (148)
T PF11568_consen 120 SQVACAKEIHDTL 132 (148)
T ss_pred HHHHHHHHHHHHH
Confidence 46777777666
No 47
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=25.59 E-value=4e+02 Score=26.25 Aligned_cols=75 Identities=5% Similarity=0.073 Sum_probs=34.9
Q ss_pred cchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCC---cc-hhhHHHHHHHHHHHHHHhc
Q psy880 183 YLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYEN---ES-RNSEMLAAACAVGVGSCFG 257 (263)
Q Consensus 183 ~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n---~~-~~r~LlaaGaAAGvAAaF~ 257 (263)
++.-+...+-.+..++.+-.-+-+=--=|-..++.+++.++...+-.+...++. .. -+..+...+++.|++.+.|
T Consensus 131 ~~~a~~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vs 209 (459)
T PF10337_consen 131 FYDARASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVS 209 (459)
T ss_pred eecchHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555444444333333322222111222667777777666554433333333 11 2455566666666665543
No 48
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=25.02 E-value=3.1e+02 Score=29.26 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchh-HHHHHHHHHHHHHhhcCCCCCC---chhHHH
Q psy880 139 VFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTF-NTLVAKIIGLTATLGSGLPLGK---EGPFVH 214 (263)
Q Consensus 139 ~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~-r~l~~K~vg~~ltlgsGlSvGr---EGP~Vh 214 (263)
++.+++-++++++.+.+.+ |-...+.. -... .++. =-++.++-++++++++|.-+=| |+ .
T Consensus 209 iiI~~INiiGGl~IGv~q~-------gms~~eA~--~~Yt----lLTIGDGLVsQIPALliS~AAGiiVTRv~~~~---~ 272 (694)
T PRK12792 209 LIIIAVNIFGGIIIGVTRH-------GMPLGQAA--DVFT----KLSVGDGLVSQIPALIVSLAAGLLVSKGGTRG---S 272 (694)
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCCHHHHH--Hhhh----eeeechhHHHHHHHHHHHHHHheEEEecCCcc---c
Confidence 4455666777776666543 43344432 1111 1221 2357788888999999987655 55 5
Q ss_pred HHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHH
Q psy880 215 IASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSC 255 (263)
Q Consensus 215 iGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAa 255 (263)
+|.-+...+.. + .+-.+++++....+|..
T Consensus 273 lg~~i~~Ql~~----------~--p~~l~i~a~~l~~l~li 301 (694)
T PRK12792 273 AEQAVLGQLGA----------Y--PRALSVAALLMFVLAIV 301 (694)
T ss_pred hHHHHHHHHHc----------C--ChHHHHHHHHHHHHhcc
Confidence 55554444332 1 23455566665555544
No 49
>PLN02975 complex I subunit
Probab=24.96 E-value=1.8e+02 Score=23.46 Aligned_cols=69 Identities=20% Similarity=0.426 Sum_probs=38.4
Q ss_pred HHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHh------hhhccccCCcch
Q psy880 169 PEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLV------TSFQGIYENESR 239 (263)
Q Consensus 169 peV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~------~l~~~~~~n~~~ 239 (263)
|+++.++......+|.-+-.+.+ ++-.+...+|..-|.-||.+-++..||-.-+=++ ..|.|..+|+.+
T Consensus 17 P~f~rVv~yfr~sDY~~~a~~ta--~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~aYq~S~~Rf~G~~EN~rE 91 (97)
T PLN02975 17 PTFTKVVGNFSALDYLRFATITG--VSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGE 91 (97)
T ss_pred CChHHHHHhCCHHHHHHHHHHHH--HHHHHHHHHccCccccchHHHHHHHHHHhhhHHhhhcccchhhcCCCCCHHH
Confidence 55555555544334444443322 1222233366666777999999999886555433 235566666543
No 50
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=23.85 E-value=6.9e+02 Score=24.40 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=36.7
Q ss_pred HHHHHHHHHHH--HHhhcC-CCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHH
Q psy880 187 NTLVAKIIGLT--ATLGSG-LPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVG 253 (263)
Q Consensus 187 r~l~~K~vg~~--ltlgsG-lSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvA 253 (263)
+..+.-+.++. ++.-+| ..+|-||-+ -+|+..+.+++..+... ++.-.--.++.+|+++|..
T Consensus 64 ~~~pliltgL~~ava~raGlfNIG~EGQ~-~~Gai~a~~~~~~~~~~----p~~l~~p~a~l~g~~~G~~ 128 (356)
T COG4603 64 KAAPLILTGLGVAVAFRAGLFNIGAEGQF-YAGAIAAALVALLFPDL----PSWLALPLALLAGAAGGGL 128 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeChHHHH-HHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHHHHHHH
Confidence 33333344433 344477 569999986 47888888888765421 2222345566666666654
No 51
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.84 E-value=2.9e+02 Score=31.79 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 214 HIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 214 hiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
..|+++|.+++.++..+.+ ..---.++.+..++|+...|+-+
T Consensus 141 ~gGGIIG~lLs~lL~~LfG----~vGa~LILLlllLIGLiLlTglS 182 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLH----SSGGTIALLCVWAAGLTLFTGWS 182 (1355)
T ss_pred cccchHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhhH
Confidence 4588888888876654221 12245667778888888887754
No 52
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=22.70 E-value=4.3e+02 Score=23.00 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=14.4
Q ss_pred hHHHhhhhcccchHHHHHHHHH
Q psy880 104 ADELRNKYRGRCATKFAAVFRF 125 (263)
Q Consensus 104 ~~~~~~~~~g~~~~~~~~~~~~ 125 (263)
+.+|.+.+.++|.+-+...+-.
T Consensus 28 s~~Fi~~HP~L~~~M~~~y~~~ 49 (155)
T PF10777_consen 28 SSSFIRNHPYLCLAMYAAYLAV 49 (155)
T ss_pred cHHHHHhCcHHHHHHHHHHHHH
Confidence 3467777888887666654433
No 53
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=22.51 E-value=6.8e+02 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhcCCCCCC
Q psy880 189 LVAKIIGLTATLGSGLPLGK 208 (263)
Q Consensus 189 l~~K~vg~~ltlgsGlSvGr 208 (263)
+..-++|..+..+.|+++=+
T Consensus 458 l~g~iiG~mv~~~m~gpi~k 477 (631)
T PRK09765 458 LLGAILGFMCSFDLGGPVNK 477 (631)
T ss_pred HHHHHHHHHHHHcCCCccch
Confidence 34445555566666666555
No 54
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=22.44 E-value=38 Score=25.17 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=9.1
Q ss_pred ccccccc-ccCCCCC
Q psy880 44 QTQSQSF-YPCPPPA 57 (263)
Q Consensus 44 ~~~~~~~-~~~p~~~ 57 (263)
.+.+|.| ||||--+
T Consensus 15 ~~e~~~ftyPCPCGD 29 (67)
T COG5216 15 SREEKTFTYPCPCGD 29 (67)
T ss_pred cCCCceEEecCCCCC
Confidence 4566666 7998543
No 55
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=22.33 E-value=2e+02 Score=29.68 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q psy880 138 WVFLALLGIIMATISFFMDRGINII 162 (263)
Q Consensus 138 w~~l~llgl~~ali~~~l~~~~~~~ 162 (263)
|++++++.++.++++++....+.++
T Consensus 481 WIsvAliVLLAaLlSfLtg~~fq~~ 505 (538)
T PF05781_consen 481 WISVALIVLLAALLSFLTGLFFQRC 505 (538)
T ss_pred HHHHHHHHHHHHHHHHHhcccccch
Confidence 7777666666667777776555444
No 56
>PRK15337 type III secretion system protein InvA; Provisional
Probab=20.86 E-value=3.1e+02 Score=29.28 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCC----chhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 188 TLVAKIIGLTATLGSGLPLGK----EGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 188 ~l~~K~vg~~ltlgsGlSvGr----EGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
-++.++-++++++++|.-+=| |+ .+|.-+...+.+ + .+-.++++|+..++|..=+-|
T Consensus 238 GLVsQIPALliS~AaGiiVTR~~~~~~---~lg~~i~~Ql~~----------~--p~~l~i~a~~l~~l~lvPG~P 298 (686)
T PRK15337 238 GLVAQIPALLISISAGFIVTRVNGDSD---NLGRNIMSQLLS----------N--PFVLVVTAILALSIGLLPGFP 298 (686)
T ss_pred hHHHHHHHHHHHHHHheEEEecCCCcc---cHHHHHHHHHHc----------C--CcHHHHHHHHHHHHhccCCCc
Confidence 356778888899999976654 44 566555554432 1 134555666665555543333
No 57
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.54 E-value=81 Score=25.74 Aligned_cols=6 Identities=50% Similarity=1.486 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy880 138 WVFLAL 143 (263)
Q Consensus 138 w~~l~l 143 (263)
|+++++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 554443
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=20.27 E-value=2e+02 Score=26.66 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHH
Q psy880 189 LVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSK 225 (263)
Q Consensus 189 l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~ 225 (263)
++.|++|.++....|+++| .-+|..+|+.+.+
T Consensus 3 ~~gki~g~~~G~~~~g~~G-----a~~G~~~Gh~~d~ 34 (267)
T PRK09430 3 YWGKILGFAFGFLFGGFFG-----ALLGLLIGHMFDK 34 (267)
T ss_pred hHHHHHHHHHHHHHhhHHH-----HHHHHHHHhHHhh
Confidence 4568999999888877765 4566666666655
No 59
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=20.17 E-value=3.3e+02 Score=29.04 Aligned_cols=93 Identities=24% Similarity=0.307 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchh-HHHHHHHHHHHHHhhcCCCCCC---chhHHH
Q psy880 139 VFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTF-NTLVAKIIGLTATLGSGLPLGK---EGPFVH 214 (263)
Q Consensus 139 ~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~-r~l~~K~vg~~ltlgsGlSvGr---EGP~Vh 214 (263)
++.+++-++++++.+.+.+ |-...+.. -... .++. =-++.++-++++++++|.-+=| |+ .
T Consensus 195 iiI~~INiiGGl~IGv~q~-------gms~~eA~--~~Yt----lLTIGDGLVsQIPALliS~AaGiiVTRv~~~~---~ 258 (678)
T TIGR01398 195 IIITLINIIGGLIIGVVQH-------GMSLSDAA--STYT----ILTIGDGLVAQIPALIISTATGLIVTRASSEG---S 258 (678)
T ss_pred HHHHHHHHHHHHhhhhhhc-------CCCHHHHH--Hhhh----eeeechhHHHHHHHHHHHHHHheEEEecCCcc---c
Confidence 3445566666666555532 43344432 1111 1221 2356788888999999977654 44 5
Q ss_pred HHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 215 IASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 215 iGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
+|.-+...+.+ + .+-.++++++...++..=+-|
T Consensus 259 lg~~i~~Ql~~----------~--p~~l~i~a~~l~~l~lvPG~P 291 (678)
T TIGR01398 259 FGKAIVTQLGA----------N--PRALLIVAAVLGLLALVPGLP 291 (678)
T ss_pred HHHHHHHHHHc----------C--ChHHHHHHHHHHHHhccCCCc
Confidence 55555544432 1 234555666555555443333
No 60
>PRK10404 hypothetical protein; Provisional
Probab=20.12 E-value=4.4e+02 Score=21.03 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=6.6
Q ss_pred hhhHHHHHHHh
Q psy880 83 GEFAKEEAKKL 93 (263)
Q Consensus 83 ~~~~~~~~~~~ 93 (263)
++.+++++..+
T Consensus 29 ~~~a~e~~~~l 39 (101)
T PRK10404 29 GDPADQKYVEL 39 (101)
T ss_pred hhhhHHHHHHH
Confidence 44566666665
Done!