Query psy880
Match_columns 263
No_of_seqs 229 out of 1371
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 19:36:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 100.0 7.6E-30 2.6E-34 254.5 12.7 150 111-263 16-178 (632)
2 3nd0_A SLL0855 protein; CLC fa 100.0 2.2E-28 7.6E-33 237.3 13.1 145 111-263 37-192 (466)
3 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 4.4E-28 1.5E-32 233.7 14.3 145 111-263 26-182 (446)
4 1ots_A Voltage-gated CLC-type 100.0 4.9E-28 1.7E-32 234.3 14.2 146 111-263 41-197 (465)
5 4ene_A CLC-EC1, H(+)/CL(-) exc 98.5 8.9E-07 3.1E-11 85.2 13.6 101 159-262 293-393 (446)
6 1ots_A Voltage-gated CLC-type 98.5 8.3E-07 2.8E-11 85.7 13.1 100 160-262 309-408 (465)
7 3nd0_A SLL0855 protein; CLC fa 98.4 1.5E-06 5E-11 84.3 11.0 145 111-262 252-400 (466)
8 3org_A CMCLC; transporter, tra 97.7 0.00025 8.6E-09 70.6 11.5 73 187-262 323-395 (632)
9 2kjf_A Carnocyclin-A; circular 24.5 76 0.0026 21.7 3.4 29 193-221 23-51 (60)
10 2pq4_B Periplasmic nitrate red 23.9 69 0.0024 20.0 2.9 24 239-262 4-27 (35)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.96 E-value=7.6e-30 Score=254.48 Aligned_cols=150 Identities=32% Similarity=0.536 Sum_probs=126.0
Q ss_pred hcccchHHHHHHHHHHHHHHhhhh---------cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhcc--
Q psy880 111 YRGRCATKFAAVFRFVWKHTFAKL---------GEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVA-- 179 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~---------~~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~-- 179 (263)
+.|+++|.+..+++++.+...... ...|+.++++++++++++.++.+.+.|.++|||||||+++++|..
T Consensus 16 lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~ 95 (632)
T 3org_A 16 LLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDK 95 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHhCcccc
Confidence 467777777777777655432211 124566677889999888888888999999999999999999976
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHH--HhhhhccccCCcchhhHHHHHHHHHHHHHHhc
Q psy880 180 LKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSK--LVTSFQGIYENESRNSEMLAAACAVGVGSCFG 257 (263)
Q Consensus 180 ~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~--~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~ 257 (263)
.++++++|++++|++++++++++|+|+|||||+||+||++|+.+++ +++. .+.|+.++|.|++||+|||+||+||
T Consensus 96 ~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~---~~~~~~~~r~ll~aGaaAG~aaaF~ 172 (632)
T 3org_A 96 MRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKE---LCTDRALRLQTLAAACAVGLASSFG 172 (632)
T ss_dssp HGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHH---HHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhcc---ccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999999999999999998 6653 1236778999999999999999999
Q ss_pred CCccCC
Q psy880 258 APIGAT 263 (263)
Q Consensus 258 APIaGv 263 (263)
|||||+
T Consensus 173 aPlaGv 178 (632)
T 3org_A 173 APLGGV 178 (632)
T ss_dssp CHHHHH
T ss_pred CccHhH
Confidence 999985
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.95 E-value=2.2e-28 Score=237.29 Aligned_cols=145 Identities=21% Similarity=0.361 Sum_probs=120.0
Q ss_pred hcccchHHHHHHHHHHHHHHhh----hh----cch---HHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhcc
Q psy880 111 YRGRCATKFAAVFRFVWKHTFA----KL----GED---WVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVA 179 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~----~~----~~~---w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~ 179 (263)
+.|.++|.+..+|+++.+.... .. ... |+++++++.+++++++++.+++.|.++|||||||++++++..
T Consensus 37 liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 116 (466)
T 3nd0_A 37 VVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL 116 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCTHHHHHHHHHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC
Confidence 5788888888777777654322 11 112 333344555667777777778899999999999999999864
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 180 LKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 180 ~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
++.++|+++.|++++++++++|+|+|||||+||+|+++|+.++|++++ ++.++|.|++||+|||+||+||||
T Consensus 117 --~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~~------~~~~~r~ll~aGaAAGlaAaF~AP 188 (466)
T 3nd0_A 117 --PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKA------TQENQRILIAVGAGAGLATAFNAP 188 (466)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred --CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcCC------ChhHHHHHHHHHHHHHHHHHhCCc
Confidence 567899999999999999999999999999999999999999999885 567899999999999999999999
Q ss_pred ccCC
Q psy880 260 IGAT 263 (263)
Q Consensus 260 IaGv 263 (263)
|||+
T Consensus 189 laGv 192 (466)
T 3nd0_A 189 LAGV 192 (466)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 9985
No 3
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.95 E-value=4.4e-28 Score=233.69 Aligned_cols=145 Identities=23% Similarity=0.340 Sum_probs=117.2
Q ss_pred hcccchHHHHHHHHHHHHHHhhh-------h-cchHHH---HHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhcc
Q psy880 111 YRGRCATKFAAVFRFVWKHTFAK-------L-GEDWVF---LALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVA 179 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~w~~---l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~ 179 (263)
..|.++|.+..+|+++.+..... . ...|+. +++++.+++++++++.+.+.|.++|||||||++++++..
T Consensus 26 liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~~~~ 105 (446)
T 4ene_A 26 VVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR 105 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHhCCC
Confidence 57888888877777765543221 1 123322 233455667777778788899999999999999999853
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhh-HHHHHHHHHHHHHHhcC
Q psy880 180 LKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNS-EMLAAACAVGVGSCFGA 258 (263)
Q Consensus 180 ~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r-~LlaaGaAAGvAAaF~A 258 (263)
++.++|+++.|++++++++++|+|+|||||+||+|+++|+.++|++++ ++.++| ++++||+|||+||+|||
T Consensus 106 --~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~------~~~~~r~~ll~aGaaAG~aaaF~a 177 (446)
T 4ene_A 106 --PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL------KGDEARHTLLATGAAAGLAAAFNA 177 (446)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC------CSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --ccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566799999999999999999999999999999999999999999885 445565 99999999999999999
Q ss_pred CccCC
Q psy880 259 PIGAT 263 (263)
Q Consensus 259 PIaGv 263 (263)
||||+
T Consensus 178 PlaGv 182 (446)
T 4ene_A 178 PLAGI 182 (446)
T ss_dssp HHHHH
T ss_pred cchHH
Confidence 99985
No 4
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.95 E-value=4.9e-28 Score=234.34 Aligned_cols=146 Identities=24% Similarity=0.350 Sum_probs=122.0
Q ss_pred hcccchHHHHHHHHHHHHHHhh----hh---c---ch-HHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhcc
Q psy880 111 YRGRCATKFAAVFRFVWKHTFA----KL---G---ED-WVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVA 179 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~----~~---~---~~-w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~ 179 (263)
..|.++|.+..+|+++.+.... .. . .. |+++++++++++++++++.+.+.|.++|||||||++++++..
T Consensus 41 liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~v~~~l~~~~ 120 (465)
T 1ots_A 41 VVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR 120 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChHHHHHHHhCCC
Confidence 5777777777777776554322 11 1 12 445567888888888888888899999999999999999863
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCC
Q psy880 180 LKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAP 259 (263)
Q Consensus 180 ~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~AP 259 (263)
++.++|+++.|++++++++++|+|+|||||+||+||++|+.++|++++ .++.++|++++||+|||+||+||||
T Consensus 121 --~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l-----~~~~~~r~li~~GaaAGlaAaF~AP 193 (465)
T 1ots_A 121 --PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL-----KGDEARHTLLATGAAAGLAAAFNAP 193 (465)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred --CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHCCc
Confidence 567899999999999999999999999999999999999999999873 2667899999999999999999999
Q ss_pred ccCC
Q psy880 260 IGAT 263 (263)
Q Consensus 260 IaGv 263 (263)
|||+
T Consensus 194 laGv 197 (465)
T 1ots_A 194 LAGI 197 (465)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 9985
No 5
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=98.53 E-value=8.9e-07 Score=85.16 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=78.3
Q ss_pred hhcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcc
Q psy880 159 INIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENES 238 (263)
Q Consensus 159 ~~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~ 238 (263)
+.|..-|.|.+.+...+++... -..-.-.++.|++.+.+|+++|.+.|.-.|+.-+||++|..++..+..+.+.. ..
T Consensus 293 ~~p~~~G~G~~~i~~~~~~~~~-~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~--~~ 369 (446)
T 4ene_A 293 VAPATSGGGFNLIPIATAGNFS-MGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY--HL 369 (446)
T ss_dssp HCGGGSSCCSTHHHHHHTTCSC-HHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGG--TC
T ss_pred HhHhhcCCcHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhCCcc--cc
Confidence 3477789999888887776421 01113456899999999999999999999999999999999998876432111 12
Q ss_pred hhhHHHHHHHHHHHHHHhcCCccC
Q psy880 239 RNSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 239 ~~r~LlaaGaAAGvAAaF~APIaG 262 (263)
.-..+..+|+||-++++-++|+++
T Consensus 370 ~~~~~a~vGmaa~~a~~~~aPlt~ 393 (446)
T 4ene_A 370 EAGTFAIAGMGALLAASIRAPLTG 393 (446)
T ss_dssp CHHHHHHHHHTHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHH
Confidence 346788899999999999999975
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=98.52 E-value=8.3e-07 Score=85.75 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=78.7
Q ss_pred hcccCCCChHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcch
Q psy880 160 NIIGRSSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESR 239 (263)
Q Consensus 160 ~~~~~GSGIpeV~~~L~g~~~~~~l~~r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~ 239 (263)
.|..-|.|-+.+...+++.. .-..-+-.++.|++.+.+|+++|.+.|.-.|+.-+||++|..++..+..+.+. ....
T Consensus 309 ~P~~lG~G~~~i~~~~~~~~-~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~--~~~~ 385 (465)
T 1ots_A 309 APATSGGGFNLIPIATAGNF-SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQ--YHLE 385 (465)
T ss_dssp CGGGSSCSTTHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGG--GTCC
T ss_pred hHhhcCChHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHCCc--cccc
Confidence 37778999888888887642 11123446689999999999999999999999999999999999987643111 1123
Q ss_pred hhHHHHHHHHHHHHHHhcCCccC
Q psy880 240 NSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 240 ~r~LlaaGaAAGvAAaF~APIaG 262 (263)
...+..+|+||-++++.++||++
T Consensus 386 ~~~~alvGmaa~~a~v~raPlt~ 408 (465)
T 1ots_A 386 AGTFAIAGMGALLAASIRAPLTG 408 (465)
T ss_dssp HHHHHHHHHTHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999874
No 7
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=98.38 E-value=1.5e-06 Score=84.27 Aligned_cols=145 Identities=16% Similarity=0.089 Sum_probs=96.3
Q ss_pred hcccchHHHHHHHHHHHHH---Hhhhhc-chHHHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHhhccccccchh
Q psy880 111 YRGRCATKFAAVFRFVWKH---TFAKLG-EDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTILRGVALKEYLTF 186 (263)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~---~~~~~~-~~w~~l~llgl~~ali~~~l~~~~~~~~~GSGIpeV~~~L~g~~~~~~l~~ 186 (263)
..|.++|.+-.+|.++... .+.++. .+++ +.+++++++..++.. +.|...|.|-+.+...+++.. .-..-.
T Consensus 252 llGi~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~---~~~~l~g~~~g~l~~-~~p~~~G~G~~~i~~~~~~~~-~~~~L~ 326 (466)
T 3nd0_A 252 ILGILFGVMGYTFNRGLFKVLDWFDRLPPLATK---WKGFLLGSIIGILSL-FPLPLTDGGDNAVLWAFNSQS-HFSTLI 326 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH---HHHHHHHHHHHHHTT-SSSSCSSSSHHHHHHHTTSCC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccHH---HHHHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHcCCc-cHHHHH
Confidence 3566666655555444222 233332 1222 223333333333322 357888999999988877642 111123
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccC
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaG 262 (263)
-.++.|++.+.+|+++|.+.|.-.|+.-+||++|..++..+..+.+. ....-..+..+|+||-++++-++|+++
T Consensus 327 ~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~--~~~~~~~~a~vGmaa~~a~v~~aPlt~ 400 (466)
T 3nd0_A 327 LVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPS--QIPEPAVMAIAGMGALVAATVRAPLTA 400 (466)
T ss_dssp HHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTT--TCSSTHHHHHHTTSHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCc--cccCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56789999999999999999999999999999999999987643211 122346788899999999999999975
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=97.66 E-value=0.00025 Score=70.62 Aligned_cols=73 Identities=19% Similarity=0.099 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHhhhhccccCCcchhhHHHHHHHHHHHHHHhcCCccC
Q psy880 187 NTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 187 r~l~~K~vg~~ltlgsGlSvGrEGP~VhiGA~igs~lg~~~~l~~~~~~n~~~~r~LlaaGaAAGvAAaF~APIaG 262 (263)
-.++.|++.+++|.++|.+.|--.|+.-+||++|..++.++..+. ++...-..+..+|+||=+|++-+||+.+
T Consensus 323 ~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~---p~~~~p~~~a~vGmaa~~~~v~~ap~t~ 395 (632)
T 3org_A 323 LMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVF---GNAIVPGSYAVVGAAAFTAGVTRALSCA 395 (632)
T ss_dssp HHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHH---CTTSCHHHHHHHHHHHHHHHHSCCTTHH
T ss_pred HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHhC---CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999876421 1112235678889999999999999864
No 9
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=24.46 E-value=76 Score=21.71 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHH
Q psy880 193 IIGLTATLGSGLPLGKEGPFVHIASIVAT 221 (263)
Q Consensus 193 ~vg~~ltlgsGlSvGrEGP~VhiGA~igs 221 (263)
.+++++++..|..+|.-|-+..+-++++.
T Consensus 23 tvgsiisilggvtvglsgvftavkaaiak 51 (60)
T 2kjf_A 23 TVGSIISILGGVTVGLSGVFTAVKAAIAK 51 (60)
T ss_dssp CHHHHHHHHCSSCTTTHHHHHHHHHHHHH
T ss_pred hhhHHHHhhcCceechhhHHHHHHHHHHH
Confidence 46889999999999999998888777764
No 10
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=23.89 E-value=69 Score=19.98 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHhcCCccC
Q psy880 239 RNSEMLAAACAVGVGSCFGAPIGA 262 (263)
Q Consensus 239 ~~r~LlaaGaAAGvAAaF~APIaG 262 (263)
.||.+|-..++++.+++.+.++.+
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~ 27 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPG 27 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchh
Confidence 367777666666666666666543
Done!