RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy880
(263 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 145 bits (367), Expect = 5e-40
Identities = 53/175 (30%), Positives = 76/175 (43%), Gaps = 44/175 (25%)
Query: 130 TFAKLGEDWVFLALLGIIMATISFFMDRGINIIG-------------------------- 163
+ L FL LLG+ A F +D ++ +
Sbjct: 3 SLMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVAL 62
Query: 164 ---------------RSSGIPEMKTILRGVA--LKEYLTFNTLVAKIIGLTATLGSGLPL 206
SG+P+MK+IL G ++ L L AK +GL +G GLP+
Sbjct: 63 CLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPV 122
Query: 207 GKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGSCFGAPIG 261
G EGP VHIA I+A +L F+ + + + + LAAACAVG+ S FGAP+G
Sbjct: 123 GWEGPNVHIACIIAHQFYRL-GVFKELCTDRALRLQTLAAACAVGLASSFGAPLG 176
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 77.8 bits (192), Expect = 1e-16
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 7/150 (4%)
Query: 114 RCATKFAAVFRFVWKHTFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKT 173
+ HT L ++A +F+ R SGIPE++
Sbjct: 55 KGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG 114
Query: 174 ILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGI 233
L + + L K G TLG G+ LG+EGP V I + ++ + +
Sbjct: 115 ALED--QRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIF----RL 168
Query: 234 YENESRNSEMLAAACAVGVGSCFGAPIGAT 263
+E+R++ +LA A G+ + F AP+
Sbjct: 169 KGDEARHT-LLATGAAAGLAAAFNAPLAGI 197
Score = 31.6 bits (72), Expect = 0.25
Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 15/152 (9%)
Query: 114 RCATKFAAVFRFVWKHTFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKT 173
+ + V K + +G + + F G G +
Sbjct: 271 KWVLGMQDLLHRVHGGNITKW---VLMGGAIGGLCGLLGFVAPA---TSG--GGFNLIPI 322
Query: 174 ILRG-VALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQG 232
G ++ + VA++I SG P G P + + +++ T +
Sbjct: 323 ATAGNFSMGMLVFI--FVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 233 IYENESRNSEMLA-AACAVGVGSCFGAPIGAT 263
Y E+ + A AP+
Sbjct: 381 QYHLEAGTFAIAGMGALLAASI---RAPLTGI 409
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 74.3 bits (183), Expect = 2e-15
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 9/151 (5%)
Query: 114 RCATKFAAVFRFVWKHTFAKLGE-DWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMK 172
+ A +R A + W+ AL+ M +SF++ + SGIP+++
Sbjct: 50 KSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGIPQIE 109
Query: 173 TILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQG 232
L G + L K++G +LG+G+ G EGP + + + +
Sbjct: 110 GHLEG--KLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWF----K 163
Query: 233 IYENESRNSEMLAAACAVGVGSCFGAPIGAT 263
+ R ++A G+ + F AP+
Sbjct: 164 ATQENQR--ILIAVGAGAGLATAFNAPLAGV 192
Score = 29.7 bits (67), Expect = 1.1
Identities = 28/154 (18%), Positives = 43/154 (27%), Gaps = 13/154 (8%)
Query: 113 GRCATKFAAVFRFVWKHTFAKLGED--WVFLALLGIIMATISFFMDRGINIIGRSSGIPE 170
G F V F +L LLG I+ +S F + G
Sbjct: 258 GVMGYTFNRGLFKV-LDWFDRLPPLATKWKGFLLGSIIGILSLFPLP---LTD--GGDNA 311
Query: 171 MKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSF 230
+ + L + + GSG G P + IASIV+ +++
Sbjct: 312 VLWAFNSQSHFSTLIL-VFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLL 370
Query: 231 QGIYENESRNSEMLA-AACAVGVGSCFGAPIGAT 263
E + A AP+ A
Sbjct: 371 FPSQIPEPAVMAIAGMGALVAATV---RAPLTAI 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 1e-07
Identities = 44/300 (14%), Positives = 88/300 (29%), Gaps = 96/300 (32%)
Query: 5 ESMLDTEWEDFDKLMTEYKRRR-MHVTASPLLHRRHSSKHQTQS--QSFY--------PC 53
+ +L+ +F+ Y +H A+ LL ++ +T+ +++ P
Sbjct: 81 DQVLNLCLTEFE---NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 54 PPP--------ANLGES----------------DELQEYDASPGMYGRYTKELGEFAKEE 89
G + +EL++ +Y Y +G+ K
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD------LYQTYHVLVGDLIKFS 191
Query: 90 AKKLNKKRKKDRLQADELRNKYRGRCATKFAAVFRFV-W-KHTFAKLGEDWVFLALLGII 147
A+ L+ L L F + W ++ +D +L
Sbjct: 192 AETLS------ELIRTTLD------AEKVFTQGLNILEWLENPSNTPDKD--YLLS---- 233
Query: 148 MATISFFMDRGINIIG-----------RSSGI-P-EMKTILRGVALKEYLTFNTLVAKII 194
IS +IG + G P E+++ L+G T ++ +
Sbjct: 234 -IPISC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---------TGHSQGL 277
Query: 195 GLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYENESRNSEMLAAACAVGVGS 254
+TA + + F T+L + Y N S +L + G
Sbjct: 278 -VTAVAIAETDSWES--FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Score = 36.6 bits (84), Expect = 0.008
Identities = 54/287 (18%), Positives = 81/287 (28%), Gaps = 102/287 (35%)
Query: 6 SMLDTEWEDFDKLMTEYKRRRMHVTASPLLH---RRHSSKHQTQSQSFYPC--PPPANLG 60
+ D+ WE F + + + V L R YP PP+ L
Sbjct: 284 AETDS-WESFFVSVRKA----ITV----LFFIGVR---------CYEAYPNTSLPPSILE 325
Query: 61 ESDELQEYDASPGM---YGRYTKELGEFAKEEAKKLNKKRKKDRLQADE-----LRNKYR 112
+S E E SP M +++ ++ K N L A + L N +
Sbjct: 326 DSLENNEGVPSP-MLSISNLTQEQV----QDYVNKTNS-----HLPAGKQVEISLVNGAK 375
Query: 113 -----GRCATKFAAVFRFVWKHTFAKLGED--------------WVFL--------ALLG 145
G + + + A G D FL LL
Sbjct: 376 NLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 146 IIMATISF-FMDRGINIIGRSSGIPEMKTI----LRGVALKEYLTFNTLVAKII------ 194
I+ + ++ + IP T LR L ++ +V II
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR--VLSGSISER-IVDCIIRLPVKW 490
Query: 195 ----GLTAT----LGSGLPLG--------KEGPFVHIASIVATLLSK 225
AT G G G K+G V + IVA L
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV--IVAGTLDI 535
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.009
Identities = 34/251 (13%), Positives = 61/251 (24%), Gaps = 70/251 (27%)
Query: 25 RRMHVTASPLLHRRHSSKHQTQSQSFYPCPPPANLGESDELQEY---------DA--SPG 73
R T H S L E E ++ A
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL------NVL-EPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 74 MYGRY-----TKELGEFAKEEAKK-LNKKRKKD------------RLQADELRNKYRGRC 115
+ ++ + K L +K+ K+ +++ + +R
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SI 449
Query: 116 ATKFAAVFRFVWKHTFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKTIL 175
+ F D F + +G + I PE T+
Sbjct: 450 VDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNI---------------EHPERMTLF 493
Query: 176 RGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGIYE 235
R V +L F L KI G + L +L I +
Sbjct: 494 RMV----FLDFRFLEQKIR------HDSTAWNASGS-------ILNTLQQLKFYKPYICD 536
Query: 236 NESRNSEMLAA 246
N+ + ++ A
Sbjct: 537 NDPKYERLVNA 547
Score = 28.3 bits (62), Expect = 3.4
Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 59/160 (36%)
Query: 2 MEDESMLDTEWEDFD-KLMTEYKRRRMHVTASPLLHRR---------------------- 38
+ S+++ + ++ + + Y ++ + LHR
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 39 -----HSSKH-----QTQSQSFYP-----------------CPPPANLGESDELQE---Y 68
H H + + + A+ + LQ+ Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 69 -----DASPGMYGRYTKELGEFAKEEAKKLNKKRKKDRLQ 103
D P Y R + +F + + L + D L+
Sbjct: 531 KPYICDNDP-KYERLVNAILDFLPKIEENLICSKYTDLLR 569
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.073
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 64 ELQEYDAS-----PGMYGRYTKELGEFAKEEAKKLNKKRKKDRLQADELRNK 110
LQE DA+ + K+L E+ + +++++ K + +R+ +
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 31.7 bits (71), Expect = 0.14
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 43/108 (39%)
Query: 3 EDESMLDTEW-EDFDKLMTEY--KRRRMHVTASPLLHRRHSSKHQTQSQSFYPCPPPANL 59
E ES+ +W E+ K + E + M + + + ++
Sbjct: 83 EPESI--RKWREEQRKRLQELDAASKVM--------------EQEWREKA---------- 116
Query: 60 GESDELQEYDASPGMYGRYTKELGEFAKEEAKKLNKKRKKDRL-QADE 106
+L+E+ R ++++ E+ K N+ K Q D
Sbjct: 117 --KKDLEEW------NQRQSEQV-----EKNKINNRIADKAFYQQPDA 151
Score = 28.6 bits (63), Expect = 1.5
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 77 RYTKELGEFAKEEAKKLNKKRKKDRLQADELRNKYRGRCATK 118
K L E + R+K +L + +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREK---AKKDLEEWNQRQSEQV 131
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.4
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 87 KEEAKKLNKKRKKDRLQADE 106
K+ KKL K L AD+
Sbjct: 19 KQALKKLQASLK---LYADD 35
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 26.9 bits (59), Expect = 7.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 78 YTKELGEFAKEEAKKLNKKRKKDRLQADELR 108
Y +++G EE K L K DRL ++L
Sbjct: 14 YYEKVGFRGVEEKKSLEILLKDDRLDTEKLC 44
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 26.8 bits (60), Expect = 8.2
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 180 LKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFV--HIASIVATLLS 224
+ TFNT +A I+ L L G++ + V +L+
Sbjct: 736 IGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRALMQEALLAVVRMLN 782
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.399
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,033,331
Number of extensions: 238126
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 17
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)