RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy880
         (263 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 74.9 bits (183), Expect = 5e-16
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 7/150 (4%)

Query: 114 RCATKFAAVFRFVWKHTFAKLGEDWVFLALLGIIMATISFFMDRGINIIGRSSGIPEMKT 173
           +              HT            L   ++A   +F+ R        SGIPE++ 
Sbjct: 39  KGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG 98

Query: 174 ILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEGPFVHIASIVATLLSKLVTSFQGI 233
            L     +    +  L  K  G   TLG G+ LG+EGP V I   +  ++  +       
Sbjct: 99  ALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIF-----R 151

Query: 234 YENESRNSEMLAAACAVGVGSCFGAPIGAT 263
            + +     +LA   A G+ + F AP+   
Sbjct: 152 LKGDEARHTLLATGAAAGLAAAFNAPLAGI 181


>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 70

 Score = 23.9 bits (52), Expect = 6.5
 Identities = 6/32 (18%), Positives = 8/32 (25%)

Query: 145 GIIMATISFFMDRGINIIGRSSGIPEMKTILR 176
           G +           IN+            ILR
Sbjct: 15  GRLTEVTEVLAKENINLSALCIAENADFGILR 46


>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
           sp., lx3 [TaxId: 576]}
          Length = 478

 Score = 25.7 bits (55), Expect = 6.6
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 12  WEDFDKLMTEYKRRRMHVTASPLLHRRHSSKHQTQSQSFYPCPP 55
            EDFD L+ E K+R M +    +++                  P
Sbjct: 78  MEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNP 121


>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
           amyloderamosa [TaxId: 32043]}
          Length = 475

 Score = 25.4 bits (54), Expect = 8.4
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 12  WEDFDKLMTEYKRRRMHVTASPLLHRRHSSKHQTQSQSFYPCPPPANLGESDELQEYDAS 71
             +F  ++  +    + V    + +  H+++  T + S        +    D    Y+ +
Sbjct: 110 TAEFQAMVQAFHNAGIKVYMDVVYN--HTAEGGTWTSSDPTTATIYSWRGLDNATYYELT 167

Query: 72  PGMYGRY 78
            G    Y
Sbjct: 168 SGNQYFY 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 964,195
Number of extensions: 43831
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 9
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)