BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8803
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
+ H +VL +FS + Y ATCS D + +W S+ K+ +++D + ++ N
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-TGKLVHTYDEHSEQVNCCHFT--N 716
Query: 83 ESDTLLLVSG 92
+S+ LLL +G
Sbjct: 717 KSNHLLLATG 726
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVW 54
HT+ V H FS + A+CS DG + +W
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
V+ HT V H FS +G+ A+C D + V+ + K+
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL 657
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
H V H+ F+ +G+ + S+D I VW
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
+ H +VL +FS + Y ATCS D + +W S+ K+ +++D + ++ N
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-TGKLVHTYDEHSEQVNCCHFT--N 709
Query: 83 ESDTLLLVSG 92
+S+ LLL +G
Sbjct: 710 KSNHLLLATG 719
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVW 54
HT+ V H FS + A+CS DG + +W
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
V+ HT V H FS +G+ A+C D + V+ + K+
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL 650
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
H V H+ F+ +G+ + S+D I VW
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSW--KYTQYSQFNE 83
H H V VS NG + + S+D I +W +V+ + +KTF+ ++ + + N+
Sbjct: 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMW------EVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 84 SDTLL 88
TL+
Sbjct: 245 DGTLI 249
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW---TSSYPSKVK-YSHDMKTFSWK-YTQ 77
T H V V + +G A+CS D + VW T ++++ + H ++ SW +
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289
Query: 78 YSQFNES 84
YS +E+
Sbjct: 290 YSSISEA 296
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
++ H ++V V++S++G Y ATCS+D + +W
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVW---TSSYPSK 61
H V H+S S NG+Y AT KD +L+W +YP +
Sbjct: 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTF 71
HT+ V H FS + + A+CS DG + +W ++ ++ K S ++K F
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERK-SINVKQF 792
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
+ H +VL +FS + R+ ATCS D + +W S
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS 692
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
V+ HT V H FS +G+ A+C D + V+ + K+
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKL 656
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.7 bits (73), Expect = 0.051, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
L H VLH+ F N TCSKD I VW + P+ +
Sbjct: 209 LIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDI 246
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core
Complex Assembly And Regulation
Length = 317
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
Length = 308
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
Length = 311
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V FS NG + A+ S D I +W
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
L HT V V FS NG + A+ S D I +W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 55
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
L HT V V FS NG + A+ S D I +W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 55
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 21 EVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVW 54
+ LT H V V ++H G A+CS DG +L+W
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 21 EVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVW 54
+ LT H V V ++H G A+CS DG +L+W
Sbjct: 49 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
L HT V V FS NG + A S D I +W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGA 55
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
SW E + D V T HT VL V+FS + R + S+D I +W +
Sbjct: 449 SWDGELRLWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L HT V V+ S +G A+ KDG +L+W
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
LT H+H V V S +G++ + S DG + +W
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 24 TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK----VKYSHDMKTFS 72
T HT +V VS+S + AT S D ++VW + PS +K +H M + +
Sbjct: 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 585
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV------KYSHDMKT 70
+ +TE+ T+H+HQ S +G Y A+ G + +W ++ + + +S +K
Sbjct: 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 108
Query: 71 FSW 73
SW
Sbjct: 109 ISW 111
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 21 EVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVW 54
+ LT H V V ++H G A+CS DG +L+W
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 21 EVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVW 54
+ LT H V V ++H G A+CS DG +++W
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 14 HTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
H + E L H+ V V+FS +G+ A+ S D + +W
Sbjct: 3 HMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW 43
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ LT H+ V V+FS +G+ A+ S D + +W
Sbjct: 543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 54 WTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSG 103
W S + +V ++ +K ++Y + FN+S LL + VH P G
Sbjct: 11 WPSPFSCRVIWALKLKGIPYEYVEEDLFNKSPLLLQYNPVHKKIPVLVHG 60
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-------YSHDMKTFSWKY 75
L H ++V V+++ +G ATCS+D + VW + + ++ D+K W
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 76 TQ 77
+Q
Sbjct: 161 SQ 162
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP 59
L H V ++F +G+ A+CS D + +W P
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 21 EVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVW 54
+ LT H V V ++H G A+CS DG + +W
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIW 82
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
SW + D T T HT VL V+FS + R + S+D I +W +
Sbjct: 105 SWDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
SW + D T T HT VL V+FS + R + S+D I +W +
Sbjct: 82 SWDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS 57
L+ H+ +V + ++ +GR+ A+ D + VW S+
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
HT VL V+FS + R + +D + VW
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
W K D T + T+ L HT+ V V+ S +G A+ KDG +W
Sbjct: 173 GWDNLVKVWDLATGRLVTD-LKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 26 HTHQVLHVSFS-HNGRYFATCSKDGYILVWTSSYP 59
H QV V+ S H F +CS+D IL+W + P
Sbjct: 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 53 VWTSSYPS--KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHF 95
+ T SY K++ D K WK Y E++ +LVS V+
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNL 58
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 53 VWTSSYPS--KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHF 95
+ T SY K++ D K WK Y E++ +LVS V+
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNL 58
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 53 VWTSSYPS--KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHF 95
+ T SY K++ D K WK Y E++ +LVS V+
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNL 58
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 18 VETEVLTQHTH---QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK 63
++ E+L++H +V VS++ G ++ DG + +W ++Y ++ K
Sbjct: 292 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 340
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 18 VETEVLTQHTH---QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK 63
++ E+L++H +V VS++ G ++ DG + +W ++Y ++ K
Sbjct: 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 18 VETEVLTQHTH---QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK 63
++ E+L++H +V VS++ G ++ DG + +W ++Y ++ K
Sbjct: 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
H VL + F++ G++F + KD + W + Y + +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFAT 44
+ L Y + E L H H+ +H +F+ N R+ T
Sbjct: 258 WSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGIT 294
>pdb|1NOC|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Domain
(Delta 114) Complexed With Type I E. Coli
Chloramphenicol Acetyl Transferase And Imidazole
pdb|1PD5|A Chain A, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|B Chain B, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|C Chain C, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|D Chain D, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|E Chain E, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|F Chain F, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|G Chain G, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|H Chain H, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|I Chain I, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|J Chain J, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|K Chain K, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1PD5|L Chain L, Crystal Structure Of E.Coli Chloramphenicol
Acetyltransferase Type I At 2.5 Angstrom Resolution
pdb|1Q23|A Chain A, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|B Chain B, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|C Chain C, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|D Chain D, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|E Chain E, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|F Chain F, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|G Chain G, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|H Chain H, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|I Chain I, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|J Chain J, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|K Chain K, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|1Q23|L Chain L, Crystal Structure Of Chloramphenicol Acetyltransferase I
Complexed With Fusidic Acid At 2.18 A Resolution
pdb|3U9B|A Chain A, Structure Of Apo-Cati
pdb|3U9B|B Chain B, Structure Of Apo-Cati
pdb|3U9B|C Chain C, Structure Of Apo-Cati
pdb|3U9B|D Chain D, Structure Of Apo-Cati
pdb|3U9B|E Chain E, Structure Of Apo-Cati
pdb|3U9B|F Chain F, Structure Of Apo-Cati
pdb|3U9B|G Chain G, Structure Of Apo-Cati
pdb|3U9B|H Chain H, Structure Of Apo-Cati
pdb|3U9B|I Chain I, Structure Of Apo-Cati
pdb|3U9F|A Chain A, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|B Chain B, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|C Chain C, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|D Chain D, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|E Chain E, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|F Chain F, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|G Chain G, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|H Chain H, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|I Chain I, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|J Chain J, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|K Chain K, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|L Chain L, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|M Chain M, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|N Chain N, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|O Chain O, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|P Chain P, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|R Chain R, Structure Of Cati In Complex With Chloramphenicol
pdb|3U9F|S Chain S, Structure Of Cati In Complex With Chloramphenicol
Length = 219
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 42 FATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY 78
F KDG +++W S +P + +TFS +++Y
Sbjct: 73 FRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEY 109
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM
ITS CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM
ITS CRYSTAL Structure
Length = 354
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK 61
L H ++VL + + + R + S+DG ++VW S +K
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK 98
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 25 QHTHQVLHVSFSHNGRYFAT-CSK--------DGYILVWTSSYPSKVKYSHDMKTFS 72
HT V V FS++G Y AT C+K DG ++ S + K ++ T S
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
LT H + V ++ G +CSKD VW S
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS 61
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS 57
L+ H+ +V + ++ +GR+ A+ D + VW S+
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 271
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS 57
L+ H+ +V + ++ +GR+ A+ D + VW S+
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260
>pdb|1W8S|A Chain A, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|B Chain B, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|C Chain C, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|D Chain D, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|E Chain E, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|F Chain F, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|G Chain G, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|H Chain H, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|I Chain I, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
pdb|1W8S|J Chain J, The Mechanism Of The Schiff Base Forming
Fructose-1,6-Bisphosphate Aldolase: Structural Analysis
Of Reaction Intermediates
Length = 263
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 61 KVKYSHDMKTFSW 73
K+KY+ D KTFSW
Sbjct: 177 KIKYTGDPKTFSW 189
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 42 FATCSKDGYILVWTSSYPSKVKYS 65
A+CS+DG + +WT S +S
Sbjct: 231 IASCSQDGRVFIWTCDDASSNTWS 254
>pdb|1OJX|A Chain A, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|B Chain B, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|C Chain C, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|D Chain D, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|E Chain E, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|F Chain F, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|G Chain G, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|H Chain H, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|I Chain I, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OJX|J Chain J, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate
Aldolase
pdb|1OK4|A Chain A, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|B Chain B, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|C Chain C, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|D Chain D, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|E Chain E, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|F Chain F, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|G Chain G, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|H Chain H, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|I Chain I, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK4|J Chain J, Archaeal Fructose 1,6-Bisphosphate Aldolase Covalently
Bound To The Substrate Dihydroxyacetone Phosphate
pdb|1OK6|A Chain A, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|B Chain B, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|C Chain C, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|D Chain D, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|E Chain E, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|F Chain F, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|G Chain G, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|H Chain H, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|I Chain I, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
pdb|1OK6|J Chain J, Orthorhombic Crystal Form Of An Archaeal Fructose
1,6-Bisphosphate Aldolase
Length = 263
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 61 KVKYSHDMKTFSW 73
K+KY+ D KTFSW
Sbjct: 177 KIKYTGDPKTFSW 189
>pdb|2YCE|A Chain A, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|B Chain B, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|C Chain C, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|D Chain D, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|E Chain E, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|F Chain F, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|G Chain G, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|H Chain H, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|I Chain I, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate.
pdb|2YCE|J Chain J, Structure Of An Archaeal Fructose-1,6-Bisphosphate
Aldolase With The Catalytic Lys Covalently Bound To The
Carbinolamine Intermediate Of The Substrate
Length = 263
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 61 KVKYSHDMKTFSW 73
K+KY+ D KTFSW
Sbjct: 177 KIKYTGDPKTFSW 189
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp And Crosslinked With
Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Atp And Crosslinked With
Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Amp-Pnp And Calcium
Length = 372
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
V+ L +H QV V ++ + TC D VWT
Sbjct: 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,676,605
Number of Sequences: 62578
Number of extensions: 139366
Number of successful extensions: 581
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 162
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)