BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8803
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KLI9|FBXW5_RAT F-box/WD repeat-containing protein 5 OS=Rattus norvegicus GN=Fbxw5
PE=2 SV=1
Length = 569
Score = 125 bits (313), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/108 (52%), Positives = 76/108 (70%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
SWYEE++RL P VE + L +HT QVLH+SFSH+G FA+CSKD + +W + +
Sbjct: 68 SWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISL 127
Query: 63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
+S DM+ ++W YTQ+SQFN+ D+LLL SGV G S+SGEIAV SL
Sbjct: 128 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 175
>sp|Q969U6|FBXW5_HUMAN F-box/WD repeat-containing protein 5 OS=Homo sapiens GN=FBXW5 PE=1
SV=1
Length = 566
Score = 125 bits (313), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/108 (52%), Positives = 77/108 (71%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
SWYEE++RL P VE + L +HT QVLH+SFSH+G FA+CSKD + +W++ +
Sbjct: 68 SWYEEFQRLYDTVPCVEVQTLREHTDQVLHLSFSHSGYQFASCSKDCTVKIWSNDLTISL 127
Query: 63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
+S DM+ ++W YTQ+SQFN+ D+LLL SGV G S+SGEIAV SL
Sbjct: 128 LHSADMRPYNWSYTQFSQFNKDDSLLLASGVFLGPHNSSSGEIAVISL 175
>sp|Q9QXW2|FBXW5_MOUSE F-box/WD repeat-containing protein 5 OS=Mus musculus GN=Fbxw5 PE=1
SV=1
Length = 573
Score = 124 bits (312), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/108 (52%), Positives = 76/108 (70%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
SWYEE++RL P VE + L +HT QVLH+SFSH+G FA+CSKD + +W + +
Sbjct: 68 SWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISL 127
Query: 63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
+S DM+ ++W YTQ+SQFN+ D+LLL SGV G S+SGEIAV SL
Sbjct: 128 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 175
>sp|Q75C26|CIAO1_ASHGO Probable cytosolic iron-sulfur protein assembly protein 1 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=CIA1 PE=3 SV=1
Length = 328
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 19 ETEVLT---QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV--------KYSHD 67
ETE+L H ++V V++SH+G Y ATCS+D + +W + S+ ++S D
Sbjct: 93 ETELLAVIEGHENEVKSVAWSHDGAYLATCSRDKSVWIWEADELSEEFECNSVLQEHSQD 152
Query: 68 MKTFSW 73
+K W
Sbjct: 153 VKHIVW 158
>sp|Q9UT57|CFD1_SCHPO Probable cytosolic Fe-S cluster assembly factor C806.02c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC806.02c PE=3 SV=1
Length = 608
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 16/80 (20%)
Query: 20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV-------KYSHDMKTFS 72
T L H ++V +++S NG Y ATCS+D + +W ++ + +++ D+K +
Sbjct: 371 TAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLAVLQEHTQDVKVVT 430
Query: 73 WKYTQYSQFNESDTLLLVSG 92
W T+ LLVSG
Sbjct: 431 WHPTED---------LLVSG 441
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTF 71
L HT+ V ++FS NG A+ DG + +W K+ + D+ T
Sbjct: 463 LQGHTNTVWALAFSPNGNTLASADNDGNVFLWI-----KISSNEDVATI 506
>sp|Q9UT85|YIPC_SCHPO Uncharacterized WD repeat-containing protein C343.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC343.04c PE=4 SV=1
Length = 507
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
S+ +YK P E V H+ +V +S+SHNGRY A+ SKD +++
Sbjct: 189 SFLSDYKADPSELPTKEYHVFHDHSDEVWQISYSHNGRYLASASKDKTAIIF 240
>sp|O74845|HIF2_SCHPO Set3 complex subunit hif2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hif2 PE=1 SV=1
Length = 564
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
V +HT V +SFSHNGRY AT G + +W+
Sbjct: 470 VFMRHTAPVSALSFSHNGRYLATGDTSGGVCIWS 503
>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1
SV=1
Length = 478
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
L +HTH V FS +GR +CS+D I +W ++ V D S + + FN
Sbjct: 140 LYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSD----SVGFANFVDFN 195
Query: 83 ESDTLLLVSG 92
S T + +G
Sbjct: 196 PSGTCIASAG 205
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS 65
HT V V FS +G++ AT S+D I VW S Y + YS
Sbjct: 101 HTAPVRSVDFSADGQFLATASEDKSIKVW-SMYRQRFLYS 139
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY 58
L HT V VSFS G FA+ D +L+W +++
Sbjct: 266 LQGHTGPVFTVSFSKGGELFASGGADTQVLLWRTNF 301
>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2
SV=1
Length = 451
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
L +HTH V FS +GR +CS+D I +W ++ V D S + + FN
Sbjct: 140 LYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSD----SVGFANFVDFN 195
Query: 83 ESDTLLLVSG 92
S T + +G
Sbjct: 196 PSGTCIASAG 205
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS 65
HT V V FS +G++ AT S+D I VW S Y + YS
Sbjct: 101 HTAPVRSVDFSADGQFLATASEDKSIKVW-SMYRQRFLYS 139
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY 58
L HT V VSFS G FA+ D +L+W +++
Sbjct: 266 LQGHTGPVFTVSFSKGGELFASGGADTQVLLWRTNF 301
>sp|B6K1G6|CFD1_SCHJY Probable cytosolic Fe-S cluster assembly factor SJAG_02895
OS=Schizosaccharomyces japonicus (strain yFS275 /
FY16936) GN=SJAG_02895 PE=3 SV=1
Length = 616
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV-------KYSHDMKTFSW 73
L H ++V V++SH+G Y ATCS+D + +W + + +++ D+K +W
Sbjct: 377 LEGHENEVKCVAWSHDGVYLATCSRDKSVWIWEAMEDDEFDCLAVLQEHTQDVKVVAW 434
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
V+T LT HT V ++FS +GR A+ +G + +W
Sbjct: 461 VQTCELTSHTSTVWALNFSPDGRLLASGDGEGEVFIW 497
>sp|Q4V7Z1|POC1B_XENLA POC1 centriolar protein homolog B OS=Xenopus laevis GN=poc1b PE=1
SV=1
Length = 468
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
LTQHT+ V FS +GR A+CS D + +W + + D K ++ Y FN
Sbjct: 140 LTQHTNWVRCARFSPDGRLIASCSDDKTVRIWDLTNRLCINTFVDYK----GHSNYVDFN 195
Query: 83 ESDTLLLVSGV 93
+ T + +G
Sbjct: 196 QMGTCVASAGA 206
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 22 VLTQHTHQ--VLHVSFSHNGRYFATCSKDGYILVWTSSY 58
+ T H HQ VL V+FS +G FA+ + D +LVW +++
Sbjct: 263 IYTLHGHQGPVLSVTFSKSGDQFASGATDAQVLVWKTNF 301
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
E+ VL HT V V+FS +G+ F T S D I W
Sbjct: 94 ESTVLKAHTAVVRCVNFSSDGQTFITASDDKSIKAWN 130
>sp|Q6NWV3|IF122_MOUSE Intraflagellar transport protein 122 homolog OS=Mus musculus
GN=Ift122 PE=2 SV=1
Length = 1182
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHD 67
L H V V+++ +G+ FA+ S D I++WTS +KY+H+
Sbjct: 49 LKGHKDTVYCVAYAKDGKRFASGSADKSIIIWTSKLEGILKYTHN 93
>sp|O02482|UNC37_CAEEL Transcription factor unc-37 OS=Caenorhabditis elegans GN=unc-37
PE=1 SV=1
Length = 612
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY 58
LTQH VL + F+H+G++F + KD + W + Y
Sbjct: 536 LTQHESCVLSLKFAHSGKFFISTGKDNALNAWRTPY 571
>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1
SV=1
Length = 476
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
L +HTH V FS +GR +CS+D I +W ++ V D S + + FN
Sbjct: 140 LYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSD----SVGFANFVDFN 195
Query: 83 ESDTLLLVSG 92
+ T + +G
Sbjct: 196 PNGTCIASAG 205
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY 58
L HT V VSFS +G + D +L+W +++
Sbjct: 266 LQGHTGPVFTVSFSKDGELLTSGGADAQVLIWRTNF 301
>sp|Q9P5P0|CIAO1_NEUCR Probable cytosolic iron-sulfur protein assembly protein 1
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=cia-1 PE=3 SV=1
Length = 468
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
T VL H ++V V++S +G+Y ATCS+D + +W
Sbjct: 149 TLVLEGHENEVKSVNYSPSGQYLATCSRDKSVWIW 183
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ---FN 82
HT V ++FS NG Y AT S+DG + +W ++ ++KTF+ + Q F+
Sbjct: 379 HTAAVRSIAFSENGYYLATGSEDGEVKLW------DLRKLKNLKTFANEEKQPINSLSFD 432
Query: 83 ESDTLLLVSG 92
+ T L + G
Sbjct: 433 MTGTFLGIGG 442
>sp|Q6NYH1|IF122_DANRE Intraflagellar transport protein 122 homolog OS=Danio rerio
GN=ift122 PE=2 SV=1
Length = 1187
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHD 67
L H V V+++ +G+ FA+ S D I++WTS +KY+H+
Sbjct: 55 LKGHKDTVYCVAYAKDGKRFASGSADKSIIIWTSKLEGILKYTHN 99
>sp|P0CS38|HIR1_CRYNJ Protein HIR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=HIR1 PE=3 SV=1
Length = 881
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
++ HT VL V ++H+GR+ AT S D I++W
Sbjct: 69 MSSHTGSVLSVRWAHHGRFLATGSDDQVIMIW 100
>sp|P0CS39|HIR1_CRYNB Protein HIR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=HIR1 PE=3 SV=1
Length = 881
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
++ HT VL V ++H+GR+ AT S D I++W
Sbjct: 69 MSSHTGSVLSVRWAHHGRFLATGSDDQVIMIW 100
>sp|Q9HBG6|IF122_HUMAN Intraflagellar transport protein 122 homolog OS=Homo sapiens
GN=IFT122 PE=1 SV=2
Length = 1241
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHD 67
L H V V+++ +G+ FA+ S D +++WTS +KY+H+
Sbjct: 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTHN 93
>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b
PE=2 SV=1
Length = 470
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
LT+HT+ V FS +GR A+CS D + +W + + D K ++ Y FN
Sbjct: 140 LTEHTNWVRCARFSPDGRLIASCSDDKTVRIWDITNRLCINTFVDYK----GHSNYVDFN 195
Query: 83 ESDTLLLVSGV 93
T + +GV
Sbjct: 196 PMGTCVASAGV 206
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 22 VLTQHTHQ--VLHVSFSHNGRYFATCSKDGYILVWTSSY 58
+ T H HQ VL V+FS +G FA+ + D +LVW +++
Sbjct: 263 IYTLHGHQGPVLSVAFSKSGDQFASGATDAQVLVWKTNF 301
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
E+ VL HT V V+FS +G F T S D I W
Sbjct: 94 ESSVLKAHTAVVRCVNFSSDGHTFITASDDKSIKAWN 130
>sp|A8WGF4|IF122_XENTR Intraflagellar transport protein 122 homolog OS=Xenopus
tropicalis GN=ift122 PE=2 SV=1
Length = 1189
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHD 67
L H V V+++ +G+ FA+ S D +++WTS +KY+H+
Sbjct: 55 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTHN 99
>sp|Q6CMA2|CIAO1_KLULA Probable cytosolic iron-sulfur protein assembly protein 1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CIA1 PE=3
SV=1
Length = 333
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 18 VETEVLT---QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS 57
+ETE+L H +++ V++SH+G ATCS+D + +W +
Sbjct: 97 LETELLAIIEGHENEIKCVAWSHDGELLATCSRDKSVWIWEAD 139
>sp|Q08924|WDR6_YEAST Regulator of Ty1 transposition protein 10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RTT10 PE=1
SV=1
Length = 1013
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 19 ETEV--LTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
ET++ L H + +V+ S+NGRY A+CS D I +W
Sbjct: 169 ETKIHNLLGHEGSIFYVNLSNNGRYVASCSDDRSIRLW 206
>sp|A4R7U3|CIAO1_MAGO7 Probable cytosolic iron-sulfur protein assembly protein 1
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=CIA1 PE=3 SV=2
Length = 446
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
T VL H +++ +FS +G+Y ATCS+D I +W
Sbjct: 138 TLVLEGHENEIKSAAFSPSGQYLATCSRDKSIWIW 172
>sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2
SV=2
Length = 614
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 16 PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
P +VLT+H ++V FS++G AT SKD +++W
Sbjct: 297 PCFTQQVLTEHCNEVWFCKFSNDGTKLATGSKDTTVIIW 335
>sp|O88879|APAF_MOUSE Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1
PE=1 SV=3
Length = 1249
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
+ H +VL +FS + Y ATCS D + +W S+ K+ +++D + ++ N
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-TGKLVHTYDEHSEQVNCCHFT--N 709
Query: 83 ESDTLLLVSG 92
+S+ LLL +G
Sbjct: 710 KSNHLLLATG 719
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVW 54
HT+ V H FS + A+CS DG + +W
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLW 770
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus
GN=Taf5 PE=2 SV=1
Length = 801
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ T H + ++FS NGR+ AT + DG +L+W
Sbjct: 665 IFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 697
>sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus
musculus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|B0LSW3|LIS1_FELCA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Felis catus GN=PAFAH1B1 PE=2 SV=1
Length = 410
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|Q9GL51|LIS1_PIG Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus
scrofa GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|Q5IS43|LIS1_PANTR Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan
troglodytes GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo
sapiens GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens
GN=TAF5 PE=1 SV=3
Length = 800
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ T H + ++FS NGR+ AT + DG +L+W
Sbjct: 664 IFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 696
>sp|Q6NZH4|LIS1_XENTR Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|Q90ZL4|LIS1_XENLA Lissencephaly-1 homolog OS=Xenopus laevis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos
taurus GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H+G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVEDISFDHSGKLLASCSADMTIKLW 177
>sp|P58404|STRN4_MOUSE Striatin-4 OS=Mus musculus GN=Strn4 PE=1 SV=2
Length = 760
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW--TSSYPS 60
D + P V + VL H V ++FS + A+CS DG + +W +SS PS
Sbjct: 536 DGYDPSVLSHVLEGHGDAVWGLAFSPTSQRLASCSADGTVRIWDPSSSGPS 586
>sp|A7EZJ5|CIAO1_SCLS1 Probable cytosolic iron-sulfur protein assembly protein 1
OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
Ss-1) GN=cia1 PE=3 SV=1
Length = 452
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
VL H ++ HV++S +G++ A+CS+D I +W
Sbjct: 160 VLEGHDSEIKHVAYSPSGQWLASCSRDKTIWIW 192
>sp|Q9PTR5|LIS1_CHICK Lissencephaly-1 homolog OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHTGKLLASCSADMTIKLW 177
>sp|O74184|WAT1_SCHPO WD repeat-containing protein wat1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wat1 PE=1 SV=1
Length = 314
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKT 70
HT+ V ++F +G++ AT S+DG + VW PS V+ ++D K+
Sbjct: 82 HTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRAPS-VQRNYDHKS 125
>sp|B5X3Z6|LIS1A_SALSA Lissencephaly-1 homolog A OS=Salmo salar GN=pafah1b1-1 PE=2 SV=1
Length = 410
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
DY T E L HT V +SF H G+ A+CS D I +W
Sbjct: 136 DYETGDFE-RTLKGHTDSVQDISFDHTGKLLASCSADMTIKLW 177
>sp|Q7K0L4|WDR26_DROME WD repeat-containing protein 26 homolog OS=Drosophila melanogaster
GN=CG7611 PE=1 SV=1
Length = 630
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 16 PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW-TSSYPSKVKYSHDMKTFSWK 74
P+ ++LT H +V FS +G AT SKD +++W Y +K+ + +
Sbjct: 303 PMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTVIIWDVDPYKLTLKHRRVLDGQAQL 362
Query: 75 YTQYSQFNESDTLLLVSG 92
+ ++ L+LV G
Sbjct: 363 SVSFVSWSPDSKLILVGG 380
>sp|Q5SP67|WDR26_DANRE WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1
Length = 576
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 16 PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
P ++LT+H ++V FS++G AT SKD +++W
Sbjct: 256 PCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIW 294
>sp|Q8C6G8|WDR26_MOUSE WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=3
Length = 641
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 16 PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
P ++LT+H ++V FS++G AT SKD +++W
Sbjct: 324 PCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIW 362
>sp|Q9NRL3|STRN4_HUMAN Striatin-4 OS=Homo sapiens GN=STRN4 PE=1 SV=2
Length = 753
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW--TSSYPS 60
D + P V + VL H V ++FS + A+CS DG + +W +SS P+
Sbjct: 529 DGYDPSVLSHVLEGHGDAVWGLAFSPTSQRLASCSADGTVRIWDPSSSSPA 579
>sp|Q9H7D7|WDR26_HUMAN WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3
Length = 661
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 16 PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
P ++LT+H ++V FS++G AT SKD +++W
Sbjct: 344 PCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIW 382
>sp|A6ZYM0|CIAO1_YEAS7 Probable cytosolic iron-sulfur protein assembly protein 1
OS=Saccharomyces cerevisiae (strain YJM789) GN=CIA1 PE=3
SV=1
Length = 330
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
++ H ++V V++S++G Y ATCS+D + +W
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
>sp|Q9VU65|POC1_DROME POC1 centriolar protein homolog OS=Drosophila melanogaster GN=Poc1
PE=2 SV=1
Length = 391
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS 57
LT HT V V+FS +G FAT D +LVW S+
Sbjct: 266 LTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSN 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,376,358
Number of Sequences: 539616
Number of extensions: 1563830
Number of successful extensions: 6809
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 5783
Number of HSP's gapped (non-prelim): 1116
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)