RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8803
(111 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 40.5 bits (93), Expect = 1e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
VL H ++V + + +G AT S D ++ +W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 35.9 bits (81), Expect = 5e-04
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF 81
T H + + F NG FAT S D ++ + + F
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFD--LRADQELMTYSHDNIICGITSVSF 278
Query: 82 NESDTLLLVSG 92
++S LLL
Sbjct: 279 SKSGRLLLAGY 289
Score = 35.1 bits (79), Expect = 8e-04
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK 63
L H ++ + + + R + S+DG +++W S +KV
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH 91
Score = 31.2 bits (69), Expect = 0.016
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 25 QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK 63
+ VSFS +GR D VW + +
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 38.3 bits (87), Expect = 6e-05
Identities = 12/62 (19%), Positives = 20/62 (32%)
Query: 17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT 76
V+ L +H QV V ++ + TC D VWT + ++
Sbjct: 41 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100
Query: 77 QY 78
Sbjct: 101 VR 102
Score = 31.0 bits (68), Expect = 0.023
Identities = 2/25 (8%), Positives = 11/25 (44%)
Query: 30 VLHVSFSHNGRYFATCSKDGYILVW 54
+ +++ + A C + + ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIY 34
Score = 28.3 bits (61), Expect = 0.18
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 19 ETEVLTQHTHQVLHVSFSHNGRY----FATCSKDGYILVW 54
+ + H + V +S G+ F T DG + +W
Sbjct: 317 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 37.8 bits (86), Expect = 1e-04
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
E L+ H V V F + S+D I VW
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
Score = 37.8 bits (86), Expect = 1e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L H H V + F Y T S D + VW
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 33.9 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L H + V V F G++ +C+ D + VW
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Score = 27.4 bits (59), Expect = 0.36
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
++ + T H V V + +G A+CS D + VW
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 37.5 bits (85), Expect = 1e-04
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 13 YHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ TP + ++ + VL S + +Y T S D V+
Sbjct: 292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 33.2 bits (74), Expect = 0.004
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 25 QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSH 66
H VL + F++ G++F + KD + W + Y + + S
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304
Score = 32.5 bits (72), Expect = 0.007
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 25 QHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
H V V+ S+ R+ T G + VW
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVW 77
Score = 25.5 bits (54), Expect = 1.7
Identities = 5/65 (7%), Positives = 16/65 (24%)
Query: 18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ 77
V + + +G + + +W + P+ + + Y
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147
Query: 78 YSQFN 82
+
Sbjct: 148 AISPD 152
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 37.1 bits (84), Expect = 2e-04
Identities = 14/99 (14%), Positives = 31/99 (31%)
Query: 13 YHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS 72
E E T H V V F+ +G+ + S D + +W + S + +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ 111
+ T + ++ + S + + +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338
Score = 35.2 bits (79), Expect = 9e-04
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ 77
VE HT V V FS++G Y AT + V+ S S V D +
Sbjct: 53 VELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111
Query: 78 YSQFNESDTLLLVSGVHF 95
+ + + L + V F
Sbjct: 112 LNTSSSPSSDLYIRSVCF 129
Score = 31.3 bits (69), Expect = 0.016
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 22 VLTQHTHQVLHV------SFSHNGRYFATCSKDGYILVW 54
+L H + V+ V S FAT S D +W
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 36.8 bits (83), Expect = 2e-04
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
V+T +T+ + + + S + + DG I +
Sbjct: 305 VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 36.1 bits (81), Expect = 3e-04
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+V H + +S S +G+ + +G+I W
Sbjct: 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39
Score = 31.1 bits (68), Expect = 0.017
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY 58
+ H ++ N + +D I W +
Sbjct: 259 HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF 299
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 34.4 bits (77), Expect = 0.001
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
++ + + + S DG + V+
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY 38
Score = 27.1 bits (58), Expect = 0.54
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 9 KRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ T + V + FS ++ T DG I W
Sbjct: 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 34.5 bits (77), Expect = 0.001
Identities = 12/60 (20%), Positives = 25/60 (41%)
Query: 19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY 78
+TE+ T+H+HQ S +G Y A+ G + +W ++ + + +
Sbjct: 50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109
Score = 29.1 bits (63), Expect = 0.11
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ T VE + + + + + S +G+I
Sbjct: 266 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 25.6 bits (54), Expect = 1.6
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
Y ++ H+ V +++S +G A+ S D I +W
Sbjct: 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 265
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 31.7 bits (70), Expect = 0.010
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
VL H V+ G + S D + VW
Sbjct: 11 VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVW 42
Score = 28.2 bits (61), Expect = 0.21
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDG----YILVW 54
+ T V + S+ A S++G +LV
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Score = 28.2 bits (61), Expect = 0.21
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSW 73
T + T H S +G + + S D I VW + + ++ +
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221
Score = 24.8 bits (52), Expect = 3.5
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
D T + + HQ N + T S DG + +W
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 31.4 bits (69), Expect = 0.014
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L +H+ +V + F + + S D IL+W
Sbjct: 262 TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292
Score = 27.9 bits (60), Expect = 0.22
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 34 SFSHNGRYFATCSKDGYILVW 54
++ + + +D I +W
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIW 40
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 31.2 bits (69), Expect = 0.016
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVW 54
H V+F G + V+
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
Score = 27.0 bits (58), Expect = 0.52
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 33 VSFSHNGRYFATCSKDGYILVW 54
+ Y + + V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVV 23
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 30.9 bits (68), Expect = 0.022
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 26 HTHQVLHVSFSHNGRYFATCSKDGYILVW 54
H V+ S +G G + +
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 31.1 bits (68), Expect = 0.022
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT 55
P+ + L H V ++ + + D I W
Sbjct: 243 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
Score = 26.8 bits (57), Expect = 0.64
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
++ H + ++ + + S DG I+ W
Sbjct: 8 TISGHNKGITALTVN----PLISGSYDGRIMEW 36
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 29.8 bits (66), Expect = 0.053
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 28 HQVLHVSFSHNGRYFATCSKDGYILVW 54
+ V S +GRY +DG + +
Sbjct: 62 YAVHISRLSASGRYLFVIGRDGKVNMI 88
Score = 26.7 bits (58), Expect = 0.58
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
Query: 16 PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSH----DMKTF 71
PI E +T+ +V+ F+ +G VW S + K + S D KT
Sbjct: 356 PIAEWAGITEGQPRVVQGEFNKDGTE-----------VWFSVWNGKDQESALVVVDDKTL 404
Query: 72 SWK 74
K
Sbjct: 405 ELK 407
Score = 25.9 bits (56), Expect = 1.4
Identities = 13/91 (14%), Positives = 24/91 (26%)
Query: 11 LDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKT 70
+DY + + RYF T + LV + K+ D
Sbjct: 190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 249
Query: 71 FSWKYTQYSQFNESDTLLLVSGVHFGTPQST 101
+ + + F + + H G
Sbjct: 250 QTPHPGRGANFVHPTFGPVWATSHMGDDSVA 280
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 29.8 bits (65), Expect = 0.055
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW--------TSSYPSKVKYSHDM 68
I H + VS + +CS DGY+ VW S + H
Sbjct: 4 IATANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 69 KTFSWKYTQYSQFNESDTLLLVSGVHFGT 97
Q + + + L+ + G
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGD 90
Score = 27.5 bits (59), Expect = 0.34
Identities = 8/62 (12%), Positives = 14/62 (22%), Gaps = 1/62 (1%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN 82
+ V S G AT +G + + S + +
Sbjct: 180 PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 83 ES 84
S
Sbjct: 239 FS 240
Score = 26.4 bits (56), Expect = 1.0
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ + H+ V+ +SF+ +G + DG + W
Sbjct: 264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 29.2 bits (64), Expect = 0.097
Identities = 10/87 (11%), Positives = 19/87 (21%), Gaps = 13/87 (14%)
Query: 24 TQHTHQVLHVSFSHNGRYFA----------TCSKDGYILVW---TSSYPSKVKYSHDMKT 70
+ H+G FA + Y+ V+ T + ++ +
Sbjct: 61 HSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120
Query: 71 FSWKYTQYSQFNESDTLLLVSGVHFGT 97
S LL
Sbjct: 121 SVGPRVHIIGNCASSACLLFFLFGSSA 147
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 28.7 bits (62), Expect = 0.15
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
L H V+ Y T + D I V+
Sbjct: 7 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVY 38
Score = 26.0 bits (55), Expect = 1.1
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ + + + + Q+ V+F A KDG +
Sbjct: 309 NLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350
Score = 24.1 bits (50), Expect = 5.8
Identities = 6/61 (9%), Positives = 15/61 (24%)
Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF 81
L+ H V + ++H G + + + + T +
Sbjct: 48 QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107
Query: 82 N 82
Sbjct: 108 I 108
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 27.8 bits (60), Expect = 0.30
Identities = 4/31 (12%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 26 HTHQVLHVSFSHNGRY--FATCSKDGYILVW 54
H++ ++ S + + +A + D + +
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
Score = 24.4 bits (51), Expect = 4.7
Identities = 3/37 (8%), Positives = 10/37 (27%)
Query: 20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
+ + + + +G + A S +
Sbjct: 39 RVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGE 75
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 426
Score = 27.6 bits (60), Expect = 0.36
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 28 HQVLHVSFSHNGRYFATCSKDGYILVW 54
+ V S +GRY +D I +
Sbjct: 62 YAVHISRMSASGRYLLVIGRDARIDMI 88
Score = 24.1 bits (51), Expect = 5.5
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 15 TPIVETEVLTQHTHQVLHVSFSHNGRYF-----ATCSKDGYILVW 54
PI E L + +V+ ++ G + ++V
Sbjct: 349 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 26.8 bits (58), Expect = 0.46
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILV 53
WY E K ++ P + T H ++ + G A+ S +V
Sbjct: 78 DRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSSFVV 127
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 26.8 bits (59), Expect = 0.59
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 30 VLHVSFSHNGRYFATCSKDGYILVWT 55
LH +F G + T D + W
Sbjct: 314 PLHTTFDGRGNAYTTLFIDSQVCKWN 339
Score = 24.5 bits (53), Expect = 3.5
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 26 HTHQVLHVSFSHNGRYFAT---CSKDGYILV 53
H H L S +G++ SKD ++ V
Sbjct: 367 HNHASLTESRDADGKWLVVLSKFSKDRFLPV 397
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 26.1 bits (56), Expect = 0.96
Identities = 0/37 (0%), Positives = 7/37 (18%)
Query: 20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS 56
+ + + + + + +
Sbjct: 9 KLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGT 45
>d1ppqa_ g.18.1.1 (A:) Complement receptor 1, cr1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 24.2 bits (52), Expect = 1.8
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 35 FSHNGRYFATCSKDGYILVWTSSYPS 60
G A C G W++ P
Sbjct: 38 HRLIGHSSAECILSGNTAHWSTKPPI 63
>d2o39c2 g.18.1.1 (C:63-126) CD46 (membrane cofactor protein, MCP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 23.0 bits (49), Expect = 4.3
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 35 FSHNGRYFATCSKDGYILVWTSSYPS 60
+ G C G + +W+ P
Sbjct: 35 YYLIGEEILYCELKGSVAIWSGKPPI 60
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 24.0 bits (50), Expect = 5.0
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 23 LTQHTHQVLHVSFSHNGRY-FATCSKDGYILVW 54
+ QV + S + RY + + +L +
Sbjct: 32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 24.1 bits (50), Expect = 5.1
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 25 QHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
+ + + + FAT D I VW
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVW 278
Score = 24.1 bits (50), Expect = 5.5
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 26 HTHQVLHVSFS--HNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWK 74
+ V V FS +Y + + G ++VW ++ + ++
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112
>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein
(SteCRISP) {Chinese green tree viper (Trimeresurus
stejnegeri) [TaxId: 39682]}
Length = 164
Score = 23.7 bits (50), Expect = 6.1
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY 58
+W++EYK Y +T H Q++ G A C Y + Y
Sbjct: 91 HAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQY 147
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding
(Amaranthus caudatus) [TaxId: 3567]}
Length = 153
Score = 23.3 bits (50), Expect = 6.7
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 12 DYHTPIVETEVLTQHTH-QVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
P+ + EV T+ ++H+ + +Y S + Y + +++ P
Sbjct: 37 KILDPLAQFEVEPSKTYDGLVHIKSRYTNKYLVRWSPNHYWITASANEPD 86
>d1h03p1 g.18.1.1 (P:5-66) Complement decay-accelerating factor
(Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 22.6 bits (48), Expect = 7.1
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 35 FSHNGRYFATCSKDGYILVWTSSYPS 60
+ G + C G + W+ P
Sbjct: 34 YKLFGSTSSFCLISGSSVQWSDPLPE 59
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 193
Score = 23.4 bits (50), Expect = 8.3
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 83 ESDTL-----LLVSGVHFGT 97
E + L L +GVH GT
Sbjct: 1 EYEYLVPPDDYLAAGVHIGT 20
>d1icfi_ g.28.1.1 (I:) Class II MHC associated p41 invariant chain
fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 22.5 bits (48), Expect = 8.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 23 LTQHTHQVLHVSFSHNGRYFATCSKDGY 50
LT+ +V H+ H G + C ++G
Sbjct: 1 LTKCQEEVSHIPAVHPGSFRPKCDENGN 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.129 0.401
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,168
Number of extensions: 16424
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 84
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)