BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8804
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
DDL+IIY L ++AL+ +V R L V+ +E H + VL+ GE TSWYI+L GS
Sbjct: 330 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGS 389
Query: 62 V 62
V
Sbjct: 390 V 390
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGS 61
++D+ II+ L G++A + ++LR +C YE + L+ G++ T+WY +L+GS
Sbjct: 34 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGS 93
Query: 62 V 62
+
Sbjct: 94 L 94
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
DDL+IIY L ++AL+ +V R L V+ +E H + VL+ GE TSWYI+L GS
Sbjct: 330 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGS 389
Query: 62 V 62
V
Sbjct: 390 V 390
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGS 61
++D+ II+ L G++A + ++LR +C YE + L+ G++ T+WY +L+GS
Sbjct: 34 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGS 93
Query: 62 V 62
+
Sbjct: 94 L 94
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
DDL+IIY L ++AL+ +V R L V+ +E H + VL+ GE TSWYI+L GS
Sbjct: 25 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGS 84
Query: 62 V 62
V
Sbjct: 85 V 85
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
DDL+IIY L ++AL+ +V R L V+ +E H + VL+ GE TSWYI+L GS
Sbjct: 330 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGS 389
Query: 62 V 62
V
Sbjct: 390 V 390
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGS 61
++D+ II+ L G++A + ++LR +C YE + L+ G++ T+WY +L+GS
Sbjct: 34 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGS 93
Query: 62 V 62
+
Sbjct: 94 L 94
>pdb|2D93|A Chain A, Solution Structure Of The Cnmp_binding Domain Of Human
Rap Guanine Nucleotide Exchange Factor 6
Length = 134
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 12 LHGLEALAPYRDSVLRSLCRVVRYE-RHQANDVLYYTGELSTSWYILLSGSVFI 64
+H L A A SV R LC V+ +E QA ++ G+ SWY++L+G+V I
Sbjct: 18 MHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEI 71
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 34 RYERHQANDVLYYTGELSTSW--YILLSGSVFIDGS 67
+ + HQ NDV+ Y G T + YI LS +D S
Sbjct: 539 KVQNHQPNDVMEYGGSPKTEFQRYIRLSRKDMLDWS 574
>pdb|3R89|A Chain A, Crystal Structure Of Orotidine 5-Phosphate Decarboxylase
From Anaerococcus Prevotii Dsm 20548
pdb|3R89|B Chain B, Crystal Structure Of Orotidine 5-Phosphate Decarboxylase
From Anaerococcus Prevotii Dsm 20548
Length = 290
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 5 LQIIYYGLHGLEALAPYRDSV 25
LQI YY +G+E YRD++
Sbjct: 65 LQIAYYESYGIEGXIAYRDTL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,296,735
Number of Sequences: 62578
Number of extensions: 112457
Number of successful extensions: 279
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 15
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)