BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8804
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TEU7|RPGF6_HUMAN Rap guanine nucleotide exchange factor 6 OS=Homo sapiens GN=RAPGEF6
PE=1 SV=2
Length = 1601
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSV 62
+DL IY LHG+E L+ R+ LR + RYER+ N VL+ + ++ WYILLSGSV
Sbjct: 23 EDLNTIYSYLHGMEILSNLREHQLRLMSARARYERYSGNQVLFCSETIARCWYILLSGSV 82
Query: 63 FIDGSMFLPQSRNFVFNVFSPVFG-------LILNPS 92
+ GSM LP F FG L+L PS
Sbjct: 83 LVKGSMVLPPCS------FGKQFGGKRGCDCLVLEPS 113
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYE-RHQANDVLYYTGELSTSWYILLSGS 61
DD++ + +H L A A SV R LC V+ +E QA ++ G+ SWY++L+G+
Sbjct: 266 DDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGT 325
Query: 62 VFI 64
V I
Sbjct: 326 VEI 328
>sp|Q8WZA2|RPGF4_HUMAN Rap guanine nucleotide exchange factor 4 OS=Homo sapiens GN=RAPGEF4
PE=1 SV=1
Length = 1011
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
DDL+IIY L ++AL+ +V R L V+ +E H + VL+ GE TSWYI+L GS
Sbjct: 342 DDLEIIYEELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGS 401
Query: 62 V 62
V
Sbjct: 402 V 402
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGS 61
++D+ II+ L ++A + ++L +C YE + L+ G++ T+WY +L+GS
Sbjct: 28 SEDVDIIFTRLKEVKAFEKFHPNLLHQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGS 87
Query: 62 V 62
+
Sbjct: 88 L 88
>sp|Q9EQZ6|RPGF4_MOUSE Rap guanine nucleotide exchange factor 4 OS=Mus musculus GN=Rapgef4
PE=1 SV=1
Length = 1011
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
DDL+IIY L ++AL+ +V R L V+ +E H + VL+ GE TSWYI+L GS
Sbjct: 342 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGS 401
Query: 62 V 62
V
Sbjct: 402 V 402
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGS 61
++D+ II+ L G++A + ++LR +C YE + L+ G++ T+WY +L+GS
Sbjct: 28 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGS 87
Query: 62 V 62
+
Sbjct: 88 L 88
>sp|Q8VCC8|RPGF3_MOUSE Rap guanine nucleotide exchange factor 3 OS=Mus musculus GN=Rapgef3
PE=2 SV=2
Length = 918
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
++L +I+ L ++A+A +SV R L V+ +E H +A VL+ G+ TSWYI+ GS
Sbjct: 231 EELDLIFEELLHIKAVAHLSNSVKRELAAVLLFEPHSKAGTVLFSQGDKGTSWYIIWKGS 290
Query: 62 V 62
V
Sbjct: 291 V 291
>sp|O95398|RPGF3_HUMAN Rap guanine nucleotide exchange factor 3 OS=Homo sapiens GN=RAPGEF3
PE=1 SV=6
Length = 923
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
++L +I+ L ++A+A +SV R L V+ +E H +A VL+ G+ TSWYI+ GS
Sbjct: 231 EELDLIFEELLHIKAVAHLSNSVKRELAAVLLFEPHSKAGTVLFSQGDKGTSWYIIWKGS 290
Query: 62 V 62
V
Sbjct: 291 V 291
>sp|Q9Z1C8|RPGF3_RAT Rap guanine nucleotide exchange factor 3 OS=Rattus norvegicus
GN=Rapgef3 PE=2 SV=2
Length = 926
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGS 61
++L +I+ L ++A+A +SV R L V+ +E H +A VL+ G+ TSWYI+ GS
Sbjct: 231 EELDLIFEELVHIKAVAHLSNSVKRELAAVLLFEPHSKAGTVLFSQGDKGTSWYIIWKGS 290
Query: 62 V 62
V
Sbjct: 291 V 291
>sp|F1M386|RPGF2_RAT Rap guanine nucleotide exchange factor 2 OS=Rattus norvegicus
GN=Rapgef2 PE=1 SV=2
Length = 1496
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYE-RHQANDVLYYTGELSTSWYILLSGS 61
DD++ + +H L A A SV R LC V+ + +A ++ GE SW ++L+GS
Sbjct: 121 DDIEQLLEFMHQLPAFANMTMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGS 180
Query: 62 V 62
V
Sbjct: 181 V 181
>sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2 OS=Mus musculus GN=Rapgef2
PE=1 SV=2
Length = 1496
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYE-RHQANDVLYYTGELSTSWYILLSGS 61
DD++ + +H L A A SV R LC V+ + +A ++ GE SW ++L+GS
Sbjct: 121 DDIEQLLEFMHQLPAFANMTMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGS 180
Query: 62 V 62
V
Sbjct: 181 V 181
>sp|Q9Y4G8|RPGF2_HUMAN Rap guanine nucleotide exchange factor 2 OS=Homo sapiens GN=RAPGEF2
PE=1 SV=1
Length = 1499
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYE-RHQANDVLYYTGELSTSWYILLSGS 61
DD++ + +H L A A SV R LC V+ + +A ++ GE SW ++L+GS
Sbjct: 121 DDIEQLLEFMHQLPAFANMTMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGS 180
Query: 62 V 62
V
Sbjct: 181 V 181
>sp|Q9D5U8|CNBD2_MOUSE Cyclic nucleotide-binding domain-containing protein 2 OS=Mus
musculus GN=Cnbd2 PE=1 SV=2
Length = 673
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 12 LHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFI----DGS 67
L L+ Y +S+ L +V+R+ER V+ G++ S+Y + G+V I DGS
Sbjct: 201 LQALDCYRSYTESLQLLLAKVIRFERFGRRRVIVKKGQMGNSFYFIYLGTVAITEDEDGS 260
>sp|P34578|RPGF1_CAEEL Rap guanine nucleotide exchange factor 1 OS=Caenorhabditis elegans
GN=epac-1 PE=4 SV=3
Length = 1038
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 15 LEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGSVFID 65
++AL+ V R L V+ E++ A V++ GE+ WYI+L G+V ++
Sbjct: 373 IKALSHLSTMVKRQLSNFVKVEQYVHAGSVVFRQGEIGVYWYIVLKGAVEVN 424
>sp|P27580|CYAA_BRELI Adenylate cyclase OS=Brevibacterium liquefaciens GN=cya PE=3 SV=1
Length = 403
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 40 ANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQSRN-FVFNVFSPVFGLILNPSVSMAAK 98
++VLY I LS S + PQ+R V+ G I P+V+MAA+
Sbjct: 286 GDEVLYVAETPQAGAQIALSLSRELAKDELFPQTRGAVVWGRLLSRLGDIYGPTVNMAAR 345
Query: 99 VSTLWDPGSMF 109
+++L +PG++
Sbjct: 346 LTSLAEPGTVL 356
>sp|Q95JR6|CNBD2_MACFA Cyclic nucleotide-binding domain-containing protein 2 OS=Macaca
fascicularis GN=CNBD2 PE=2 SV=1
Length = 585
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSV 62
D++Q + L L++ Y + + L +V+R+ER V+ G+ S+Y + G+V
Sbjct: 102 DEIQTVCNILQVLDSYRNYAEPLQLLLAKVMRFERFGRRRVIIKKGQKGNSFYFIYLGTV 161
Query: 63 FI----DGS 67
I DGS
Sbjct: 162 AITNDEDGS 170
>sp|Q96M20|CNBD2_HUMAN Cyclic nucleotide-binding domain-containing protein 2 OS=Homo
sapiens GN=CNBD2 PE=2 SV=2
Length = 576
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSV 62
D++Q + L L++ Y + + L +V+R+ER V+ G+ S+Y + G+V
Sbjct: 102 DEIQAVCNILQVLDSYRNYAEPLQLLLAKVMRFERFGRRRVIIKKGQKGNSFYFIYLGTV 161
Query: 63 FI----DGS 67
I DGS
Sbjct: 162 AITKDEDGS 170
>sp|Q00999|MCP_SHV21 Major capsid protein OS=Saimiriine herpesvirus 2 (strain 11) GN=25
PE=3 SV=1
Length = 1371
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 57 LLSGSVFIDGSMFLPQSRNFVFNVFSPVFGLILNPSV 93
L++ S F+D S LP SR +V + + + G + +V
Sbjct: 219 LVNNSFFLDKSEHLPHSRQYVLGILTEMIGAVCKETV 255
>sp|Q3AVL6|MRAY_SYNS9 Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Synechococcus
sp. (strain CC9902) GN=mraY PE=3 SV=1
Length = 368
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 5 LQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYI----LLSG 60
LQ++ G HG ALA Y ++ + + + RH A + TG L+ + LLS
Sbjct: 228 LQLMLRGNHGDPALAGYCMTMAGTWLGFLVFNRHPARVFMGDTGSLAMGAALTAIALLSN 287
Query: 61 SVF---IDGSMFLPQSRNFVFNVF 81
S++ + G +FL +S + + V+
Sbjct: 288 SLWPLLVMGGVFLAESLSVIIQVW 311
>sp|Q5JEQ6|MTAP_PYRKO S-methyl-5'-thioadenosine phosphorylase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=mtnP PE=3
SV=1
Length = 257
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 62 VFIDGSMFLPQSRNFVFNVFSPVFGLILNPSVSMAAKVSTLW 103
V I+G F ++ +F+F F+ + G+ L P V++A ++ +
Sbjct: 155 VCIEGPRFSTRAESFMFRQFAHIIGMTLVPEVNLARELGMCY 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,098,628
Number of Sequences: 539616
Number of extensions: 1413196
Number of successful extensions: 3832
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3810
Number of HSP's gapped (non-prelim): 24
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)