Query psy8804
Match_columns 114
No_of_seqs 158 out of 593
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:42:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ocp_A PRKG1 protein; serine/t 99.7 3.4E-16 1.2E-20 106.0 8.7 94 2-95 15-117 (139)
2 4f7z_A RAP guanine nucleotide 99.7 2.7E-16 9.4E-21 137.2 10.3 94 1-95 33-142 (999)
3 2d93_A RAP guanine nucleotide 99.6 4E-16 1.4E-20 105.2 7.5 94 2-95 8-112 (134)
4 1vp6_A CNBD, cyclic-nucleotide 99.6 5.1E-16 1.7E-20 104.3 7.7 94 2-95 3-103 (138)
5 3idb_B CAMP-dependent protein 99.6 6.1E-16 2.1E-20 107.3 7.8 94 2-95 30-136 (161)
6 3pna_A CAMP-dependent protein 99.6 1E-15 3.5E-20 105.6 8.2 94 2-95 30-132 (154)
7 3of1_A CAMP-dependent protein 99.6 1.6E-15 5.6E-20 110.1 8.0 91 5-95 2-101 (246)
8 3shr_A CGMP-dependent protein 99.6 5.2E-15 1.8E-19 111.6 10.1 94 2-95 31-133 (299)
9 3gyd_A CNMP-BD protein, cyclic 99.6 4.5E-15 1.6E-19 106.2 9.0 93 3-95 32-138 (187)
10 2z69_A DNR protein; beta barre 99.6 1E-14 3.6E-19 99.0 9.8 92 4-95 6-112 (154)
11 3mdp_A Cyclic nucleotide-bindi 99.6 2.8E-15 9.5E-20 100.7 5.7 86 10-95 6-108 (142)
12 2pqq_A Putative transcriptiona 99.6 8.4E-15 2.9E-19 98.8 7.5 87 9-95 4-104 (149)
13 4f8a_A Potassium voltage-gated 99.6 1.6E-14 5.4E-19 98.9 9.0 87 9-95 26-123 (160)
14 2qcs_B CAMP-dependent protein 99.5 1.1E-14 3.7E-19 109.0 7.7 94 2-95 31-133 (291)
15 1o7f_A CAMP-dependent RAP1 gua 99.5 5.3E-14 1.8E-18 112.2 10.3 93 2-95 34-142 (469)
16 4din_B CAMP-dependent protein 99.5 2.1E-14 7.2E-19 113.7 7.6 94 2-95 122-224 (381)
17 3dkw_A DNR protein; CRP-FNR, H 99.5 1.6E-14 5.4E-19 104.2 6.2 89 7-95 6-109 (227)
18 1wgp_A Probable cyclic nucleot 99.5 1.7E-14 5.9E-19 96.9 5.7 86 10-95 6-115 (137)
19 2ptm_A Hyperpolarization-activ 99.5 3.8E-14 1.3E-18 101.5 7.7 87 9-95 70-166 (198)
20 3d0s_A Transcriptional regulat 99.5 1.8E-14 6.2E-19 104.3 6.0 88 8-95 4-105 (227)
21 3tnp_B CAMP-dependent protein 99.5 4.4E-14 1.5E-18 113.5 7.9 94 2-95 137-243 (416)
22 3e97_A Transcriptional regulat 99.5 2.4E-14 8.3E-19 103.9 5.5 87 9-95 5-105 (231)
23 4ev0_A Transcription regulator 99.5 4E-14 1.4E-18 101.4 6.5 84 12-95 1-98 (216)
24 3fx3_A Cyclic nucleotide-bindi 99.5 2.7E-14 9.1E-19 104.1 5.5 90 6-95 7-110 (237)
25 3dv8_A Transcriptional regulat 99.5 6.7E-14 2.3E-18 100.5 7.2 87 9-95 2-104 (220)
26 3iwz_A CAP-like, catabolite ac 99.5 8.9E-14 3E-18 100.4 7.7 89 7-95 8-111 (230)
27 1zyb_A Transcription regulator 99.5 1.1E-13 3.6E-18 101.4 8.1 89 7-95 15-120 (232)
28 1o7f_A CAMP-dependent RAP1 gua 99.5 1.8E-13 6E-18 109.2 9.9 93 2-94 329-433 (469)
29 3bpz_A Potassium/sodium hyperp 99.5 4.8E-14 1.6E-18 101.4 5.9 87 9-95 71-166 (202)
30 4ava_A Lysine acetyltransferas 99.5 3.7E-14 1.3E-18 108.6 4.6 87 9-95 12-111 (333)
31 3dn7_A Cyclic nucleotide bindi 99.5 8.2E-14 2.8E-18 98.7 6.1 86 10-95 7-107 (194)
32 3ukn_A Novel protein similar t 99.4 4.9E-13 1.7E-17 96.6 8.7 85 11-95 76-171 (212)
33 4f7z_A RAP guanine nucleotide 99.4 5.5E-13 1.9E-17 116.4 9.5 81 2-82 329-416 (999)
34 2gau_A Transcriptional regulat 99.4 3.7E-13 1.3E-17 97.7 5.0 82 14-95 14-109 (232)
35 3shr_A CGMP-dependent protein 99.4 6E-13 2.1E-17 100.2 5.9 90 6-95 153-257 (299)
36 3of1_A CAMP-dependent protein 99.4 1E-12 3.5E-17 95.3 6.9 87 9-95 124-220 (246)
37 3cf6_E RAP guanine nucleotide 99.4 1.3E-12 4.4E-17 111.8 8.4 94 2-95 24-129 (694)
38 2fmy_A COOA, carbon monoxide o 99.4 2.2E-13 7.6E-18 98.3 2.9 83 10-95 4-95 (220)
39 2qcs_B CAMP-dependent protein 99.4 4.2E-12 1.4E-16 94.9 9.8 88 8-95 155-257 (291)
40 1ft9_A Carbon monoxide oxidati 99.3 3.5E-13 1.2E-17 97.6 2.1 82 11-95 1-91 (222)
41 3ryp_A Catabolite gene activat 99.3 6.6E-12 2.2E-16 89.4 7.0 80 16-95 2-96 (210)
42 3tnp_B CAMP-dependent protein 99.2 2.4E-11 8E-16 97.5 8.4 85 10-94 267-371 (416)
43 4din_B CAMP-dependent protein 99.2 1.4E-11 4.9E-16 97.4 6.8 88 8-95 246-348 (381)
44 3kcc_A Catabolite gene activat 99.2 2.7E-11 9.3E-16 90.3 6.8 86 10-95 46-146 (260)
45 2oz6_A Virulence factor regula 99.2 6.5E-11 2.2E-15 84.0 7.4 75 21-95 1-93 (207)
46 3beh_A MLL3241 protein; transm 99.1 9.8E-12 3.4E-16 97.1 0.4 87 9-95 227-320 (355)
47 1o5l_A Transcriptional regulat 99.1 5.2E-11 1.8E-15 85.9 4.1 81 15-95 4-99 (213)
48 3e6c_C CPRK, cyclic nucleotide 99.1 1.3E-10 4.3E-15 85.6 5.3 82 12-95 11-105 (250)
49 2bgc_A PRFA; bacterial infecti 99.0 5.3E-10 1.8E-14 81.8 7.0 63 19-82 2-76 (238)
50 3la7_A Global nitrogen regulat 98.9 1.5E-09 5.2E-14 79.8 6.2 73 23-95 30-121 (243)
51 3b02_A Transcriptional regulat 98.8 5.4E-09 1.8E-13 74.1 5.5 60 35-95 1-74 (195)
52 2zcw_A TTHA1359, transcription 98.7 8.5E-09 2.9E-13 73.3 3.8 66 29-95 1-82 (202)
53 2q1z_B Anti-sigma factor CHRR, 73.3 6.6 0.00022 28.0 5.3 43 32-74 126-168 (195)
54 3fjs_A Uncharacterized protein 65.8 20 0.00069 22.6 6.0 32 34-65 39-70 (114)
55 2o1q_A Putative acetyl/propion 62.5 8.5 0.00029 25.9 3.8 34 32-65 45-78 (145)
56 2ozj_A Cupin 2, conserved barr 60.8 17 0.00058 22.5 4.8 29 37-65 44-72 (114)
57 3ebr_A Uncharacterized RMLC-li 59.0 16 0.00054 25.3 4.7 44 31-74 42-87 (159)
58 3lwc_A Uncharacterized protein 57.7 32 0.0011 22.2 5.9 31 34-65 43-73 (119)
59 2xp1_A SPT6; transcription, IW 57.3 19 0.00065 25.6 5.0 40 13-58 12-51 (178)
60 1yhf_A Hypothetical protein SP 53.2 36 0.0012 20.8 5.5 31 35-65 44-74 (115)
61 4e2g_A Cupin 2 conserved barre 51.9 41 0.0014 20.9 5.9 32 34-65 44-75 (126)
62 2pfw_A Cupin 2, conserved barr 50.2 41 0.0014 20.5 5.5 32 34-65 37-68 (116)
63 3cjx_A Protein of unknown func 48.1 27 0.00092 24.3 4.5 35 32-66 44-78 (165)
64 3rns_A Cupin 2 conserved barre 47.7 37 0.0013 24.1 5.4 32 34-65 40-71 (227)
65 1dgw_A Canavalin; duplicated s 47.6 33 0.0011 23.6 4.9 32 34-65 44-75 (178)
66 2vec_A YHAK, pirin-like protei 47.0 48 0.0016 24.8 6.0 30 37-66 188-217 (256)
67 3o14_A Anti-ecfsigma factor, C 46.8 35 0.0012 24.8 5.2 42 31-73 146-187 (223)
68 3h8u_A Uncharacterized conserv 45.2 51 0.0017 20.5 5.2 32 34-65 42-74 (125)
69 2gu9_A Tetracenomycin polyketi 42.4 53 0.0018 19.6 5.7 32 34-65 24-58 (113)
70 3o14_A Anti-ecfsigma factor, C 41.0 23 0.00079 25.8 3.3 40 33-72 45-84 (223)
71 1v70_A Probable antibiotics sy 40.0 55 0.0019 19.0 5.5 32 34-65 31-63 (105)
72 1cch_A Cytochrome C551; electr 39.8 44 0.0015 19.0 4.0 18 15-33 61-78 (82)
73 3rns_A Cupin 2 conserved barre 39.1 78 0.0027 22.4 5.9 32 34-65 156-187 (227)
74 1o5u_A Novel thermotoga mariti 38.2 72 0.0025 19.9 5.2 43 21-65 20-63 (101)
75 2fqp_A Hypothetical protein BP 37.6 25 0.00086 21.3 2.7 31 35-65 22-53 (97)
76 1vj2_A Novel manganese-contain 37.6 65 0.0022 20.3 4.8 31 35-65 52-82 (126)
77 1mz4_A Cytochrome C550; PSII a 36.6 30 0.001 22.3 3.1 21 15-35 101-121 (137)
78 3vi8_A Peroxisome proliferator 36.3 36 0.0012 25.2 3.8 31 3-33 87-117 (273)
79 1tq5_A Protein YHHW; bicupin, 35.2 1.2E+02 0.0042 22.2 6.6 35 36-70 165-200 (242)
80 1cc5_A Cytochrome C5; electron 34.1 34 0.0012 20.3 2.9 23 12-34 56-81 (83)
81 3ibm_A Cupin 2, conserved barr 33.4 72 0.0025 21.6 4.8 31 35-65 60-90 (167)
82 4i4a_A Similar to unknown prot 32.7 70 0.0024 19.8 4.4 31 35-65 38-68 (128)
83 1y9q_A Transcriptional regulat 32.4 97 0.0033 20.9 5.3 29 37-65 110-140 (192)
84 3cu4_A Cytochrome C family pro 31.4 57 0.0019 18.8 3.5 30 5-34 46-81 (85)
85 1ayg_A Cytochrome C-552; elect 31.3 58 0.002 18.6 3.6 18 15-33 59-76 (80)
86 3pl0_A Uncharacterized protein 31.1 87 0.003 23.4 5.2 56 52-107 171-230 (254)
87 3dp5_A OMCF, cytochrome C fami 31.0 54 0.0018 20.0 3.5 29 6-34 61-95 (99)
88 1o4t_A Putative oxalate decarb 31.0 1E+02 0.0036 19.6 5.3 31 35-65 61-92 (133)
89 2d0s_A Cytochrome C, cytochrom 29.8 32 0.0011 19.7 2.2 20 15-34 57-76 (79)
90 1a56_A C-551, ferricytochrome 29.7 40 0.0014 19.4 2.6 19 15-33 59-77 (81)
91 3e9v_A Protein BTG2; B-cell tr 28.8 1.1E+02 0.0036 20.5 4.8 41 19-60 78-118 (120)
92 3v3e_B Nuclear receptor subfam 28.8 40 0.0014 24.7 3.0 30 4-33 64-93 (257)
93 3cqv_A Nuclear receptor subfam 28.2 39 0.0013 23.4 2.7 30 4-33 32-61 (199)
94 3kgz_A Cupin 2 conserved barre 27.9 68 0.0023 21.6 3.8 30 36-65 49-78 (156)
95 2bnm_A Epoxidase; oxidoreducta 27.7 70 0.0024 21.6 3.9 29 37-65 123-154 (198)
96 2nxx_A Ultraspiracle (USP, NR2 27.6 54 0.0018 23.2 3.4 30 4-33 49-78 (235)
97 1gdv_A Cytochrome C6; RED ALGA 27.5 55 0.0019 18.6 2.9 29 6-34 45-78 (85)
98 2iz2_A FTZ-F1 alpha, nuclear h 27.5 65 0.0022 23.1 3.9 30 4-33 58-87 (243)
99 3es4_A Uncharacterized protein 27.5 56 0.0019 21.6 3.2 27 38-65 49-75 (116)
100 3jzv_A Uncharacterized protein 27.2 70 0.0024 21.8 3.8 29 37-65 59-87 (166)
101 3n00_A REV-ERBA-alpha; reverba 26.7 40 0.0014 24.5 2.6 30 4-33 77-106 (245)
102 2qnk_A 3-hydroxyanthranilate 3 26.2 1.3E+02 0.0043 23.2 5.4 55 43-98 44-113 (286)
103 1osh_A BIle acid receptor; nuc 26.2 51 0.0017 23.3 3.0 30 4-33 54-83 (232)
104 2o5a_A BH1328 protein; BHR21, 26.1 25 0.00086 23.7 1.3 62 20-85 42-104 (125)
105 3cew_A Uncharacterized cupin p 25.5 1.1E+02 0.0037 19.0 4.3 31 35-65 30-62 (125)
106 1j58_A YVRK protein; cupin, de 25.3 1.5E+02 0.0053 22.3 5.9 30 36-65 262-292 (385)
107 2nxx_E Ecdysone receptor (ECR, 25.3 53 0.0018 23.6 3.0 30 4-33 64-93 (248)
108 3i7d_A Sugar phosphate isomera 25.1 79 0.0027 21.2 3.8 31 35-65 47-79 (163)
109 2vqa_A SLL1358 protein, MNCA; 25.0 2.1E+02 0.0073 21.2 6.5 31 34-64 237-268 (361)
110 1xdk_B RAR-beta, retinoic acid 24.9 71 0.0024 23.8 3.8 29 4-32 83-111 (303)
111 3ltx_A Estrogen receptor; cons 24.9 54 0.0019 23.5 3.0 30 4-33 48-77 (243)
112 3k6p_A Steroid hormone recepto 24.7 55 0.0019 23.6 3.0 30 4-33 60-89 (248)
113 1pdu_A DHR38, nuclear hormone 24.6 56 0.0019 23.6 3.0 29 5-33 60-88 (244)
114 1n83_A Nuclear receptor ROR-al 24.4 64 0.0022 23.7 3.4 29 4-32 77-105 (270)
115 2d5f_A Glycinin A3B4 subunit; 24.3 1.4E+02 0.0048 24.4 5.6 48 24-73 38-85 (493)
116 3ph2_B Cytochrome C6; photosyn 24.3 85 0.0029 17.8 3.4 21 14-34 58-79 (86)
117 3gyt_A Nuclear hormone recepto 24.3 48 0.0016 24.3 2.6 28 5-32 54-81 (244)
118 2e2r_A Estrogen-related recept 24.3 57 0.0019 23.4 3.0 30 4-33 60-89 (244)
119 3u9q_A Peroxisome proliferator 24.2 57 0.0019 24.0 3.0 28 5-32 86-113 (269)
120 1fcy_A RAR-gamma-1, retinoic a 24.2 58 0.002 23.1 3.0 28 5-32 57-84 (236)
121 3kmr_A Retinoic acid receptor 24.0 57 0.002 23.9 3.0 29 4-32 80-108 (266)
122 4b29_A Dimethylsulfoniopropion 24.0 1.2E+02 0.004 22.4 4.7 37 39-75 140-181 (217)
123 3l2h_A Putative sugar phosphat 23.8 77 0.0026 20.8 3.5 31 35-65 50-82 (162)
124 2p1t_A Retinoic acid receptor 23.6 62 0.0021 22.9 3.1 30 4-33 53-82 (240)
125 2f4p_A Hypothetical protein TM 23.6 1.3E+02 0.0044 19.6 4.6 31 35-65 52-82 (147)
126 3dmi_A Cytochrome C6; electron 23.5 89 0.003 17.8 3.4 29 6-34 47-80 (88)
127 1sfn_A Conserved hypothetical 23.5 2E+02 0.007 20.4 6.1 29 35-65 54-82 (246)
128 3bcw_A Uncharacterized protein 23.4 86 0.0029 20.4 3.6 27 38-65 56-82 (123)
129 2qnk_A 3-hydroxyanthranilate 3 23.4 1E+02 0.0034 23.8 4.3 26 38-64 214-239 (286)
130 3oll_A Estrogen receptor beta; 23.2 62 0.0021 23.0 3.0 30 4-33 45-74 (240)
131 1gks_A Cytochrome C551; haloph 23.1 66 0.0022 18.5 2.7 20 14-33 54-74 (78)
132 1l2j_A Estrogen receptor beta; 23.1 62 0.0021 23.7 3.1 30 4-33 71-100 (271)
133 3p0u_A Nuclear receptor subfam 22.9 62 0.0021 23.3 3.0 31 4-34 46-76 (249)
134 3dzy_D Peroxisome proliferator 22.9 80 0.0027 24.9 3.9 29 5-33 235-263 (419)
135 3or8_A Transcription elongatio 22.8 1.1E+02 0.0037 22.1 4.2 38 14-56 7-45 (197)
136 1ls9_A Cytochrome C6; omega lo 22.8 73 0.0025 18.5 2.9 21 14-34 62-83 (91)
137 2hc4_A Vitamin D receptor; alp 22.7 85 0.0029 23.5 3.8 28 5-32 115-142 (302)
138 3vhu_A Mineralocorticoid recep 22.7 86 0.003 23.4 3.9 30 4-33 86-115 (294)
139 1ovl_A Orphan nuclear receptor 22.5 64 0.0022 23.4 3.0 30 4-33 86-115 (271)
140 3cjw_A COUP transcription fact 22.4 55 0.0019 23.3 2.6 30 4-33 49-78 (244)
141 3l0l_A Nuclear receptor ROR-ga 22.3 54 0.0019 23.7 2.6 30 4-33 68-97 (248)
142 1yye_A ER-beta, estrogen recep 21.9 66 0.0023 23.5 3.0 30 4-33 43-72 (268)
143 3vhv_A Mineralocorticoid recep 21.5 69 0.0024 23.3 3.0 30 4-33 52-81 (260)
144 2ea7_A 7S globulin-1; beta bar 21.4 1.4E+02 0.0049 23.7 5.1 34 32-65 62-95 (434)
145 1xpc_A Estrogen receptor; nucl 21.2 61 0.0021 23.2 2.6 30 4-33 47-76 (248)
146 1o9y_A HRCQ2; secretory protei 21.2 98 0.0033 18.9 3.3 41 36-76 34-74 (84)
147 2vpv_A Protein MIF2, MIF2P; nu 21.2 54 0.0018 23.0 2.3 27 49-75 108-138 (166)
148 1hg4_A Ultraspiracle; nuclear 21.2 70 0.0024 23.2 3.0 30 4-33 59-88 (279)
149 2pyt_A Ethanolamine utilizatio 21.2 1.3E+02 0.0046 19.6 4.2 29 35-65 61-89 (133)
150 3ipq_A Oxysterols receptor LXR 20.6 61 0.0021 23.9 2.6 29 5-33 101-129 (283)
151 1f1f_A Cytochrome C6; heme, pr 20.4 95 0.0033 17.7 3.1 21 14-34 61-82 (89)
152 3b0t_A Vitamin D3 receptor; nu 20.4 63 0.0021 23.2 2.6 30 4-33 68-97 (254)
153 1g2n_A Ultraspiracle protein; 20.4 62 0.0021 23.4 2.6 30 4-33 54-83 (264)
154 2opk_A Hypothetical protein; p 20.4 93 0.0032 19.4 3.2 27 39-65 38-67 (112)
155 1t7r_A Androgen receptor; nucl 20.3 76 0.0026 23.2 3.0 30 4-33 61-90 (269)
156 3d0j_A Uncharacterized protein 20.2 75 0.0026 21.9 2.8 22 44-65 43-64 (140)
157 3ht1_A REMF protein; cupin fol 20.2 1.1E+02 0.0038 19.1 3.6 29 37-65 45-73 (145)
No 1
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.66 E-value=3.4e-16 Score=105.95 Aligned_cols=94 Identities=10% Similarity=0.069 Sum_probs=81.8
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe--Cc---ccCCCCcce
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID--GS---MFLPQSRNF 76 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g~---~~~p~~~fg 76 (114)
+++.+.+.++|+++++|++|++++++.|+..+..+.|++|++|+++||+++++|+|++|.|++. |+ ...||+.||
T Consensus 15 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~~~~G~~fG 94 (139)
T 3ocp_A 15 PQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFG 94 (139)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEEECTTCEES
T ss_pred HHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEEeCCCCEec
Confidence 4567778899999999999999999999999999999999999999999999999999999985 42 455999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 95 e~~~l~~~~~~~~~~a~~~~~v~ 117 (139)
T 3ocp_A 95 ELAILYNCTRTATVKTLVNVKLW 117 (139)
T ss_dssp CHHHHHCCCCSSEEEESSCEEEE
T ss_pred cHHHHCCCCcceEEEECcceEEE
Confidence 887765 4566777777654
No 2
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.66 E-value=2.7e-16 Score=137.19 Aligned_cols=94 Identities=21% Similarity=0.396 Sum_probs=84.1
Q ss_pred ChhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeC------------cc
Q psy8804 1 MADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDG------------SM 68 (114)
Q Consensus 1 ~~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g------------~~ 68 (114)
+++|++.|+..|+++++|+.|++.++++||..+.+++|++|++||+|||++++||||++|+|.|.. +.
T Consensus 33 t~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~ 112 (999)
T 4f7z_A 33 SSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICT 112 (999)
T ss_dssp CHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEE
Confidence 368999999999999999999999999999999999999999999999999999999999999831 35
Q ss_pred cCCCCcceeecccC----ceeeeeecCcccc
Q psy8804 69 FLPQSRNFVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 69 ~~p~~~fg~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.||.+||+ +.+. .+.|.++++++|.
T Consensus 113 l~~G~sFGE-all~n~pRtaTv~a~~~s~l~ 142 (999)
T 4f7z_A 113 LGIGTAFGE-SILDNTPRHATIVTRESSELL 142 (999)
T ss_dssp EETTCEECG-GGGGTCCCSSEEEESSSEEEE
T ss_pred ecCCcchhh-hhccCCCcceEEEeccceEEE
Confidence 669999999 4444 6788888888764
No 3
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=105.25 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=82.0
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEec-CCCEEEecCCCCCeEEEEEeeeEEEe---C--cccCCCCcc
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQ-ANDVLYYTGELSTSWYILLSGSVFID---G--SMFLPQSRN 75 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~-~G~~If~qGd~~~~~yiIlsG~VkI~---g--~~~~p~~~f 75 (114)
.++++.+..+|+++++|+.|++++++.|+..+..++|+ +|++||++||+++++|+|++|.|++. | ....||+.|
T Consensus 8 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~~G~~f 87 (134)
T 2d93_A 8 DDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFMGNSF 87 (134)
T ss_dssp TTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEECTTCEE
T ss_pred HHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEecCCCcc
Confidence 47788889999999999999999999999999999999 99999999999999999999999984 3 245699999
Q ss_pred eeecccC----ceee-eeecCcccc
Q psy8804 76 FVFNVFS----PVFG-LILNPSVSM 95 (114)
Q Consensus 76 g~~~~~~----~~~~-~~~~~~~~~ 95 (114)
|+.+.+. +..+ .++++++++
T Consensus 88 G~~~~~~~~~~~~~~~~a~~~~~~~ 112 (134)
T 2d93_A 88 GITPTLDKQYMHGIVRTKVDDCQFV 112 (134)
T ss_dssp SCCSSSCCEECCSEEEESSSSEEEE
T ss_pred ChhHhcCCCcceeEEEEEecceEEE
Confidence 9988877 2345 677777755
No 4
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.64 E-value=5.1e-16 Score=104.33 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=82.1
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeC---cccCCCCcceee
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDG---SMFLPQSRNFVF 78 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g---~~~~p~~~fg~~ 78 (114)
.++...+.+.|+++++|++|++++++.++..+..+.|++|++|+++||+++++|+|++|.|++.. ....||+.||+.
T Consensus 3 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 3 RGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAFFGEM 82 (138)
T ss_dssp HHHHHHHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSSCEEECTTCEECHH
T ss_pred hhhHHHHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCCcceECCCCEeeeh
Confidence 46778888999999999999999999999999999999999999999999999999999999862 356699999987
Q ss_pred cccC----ceeeeeecCcccc
Q psy8804 79 NVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 79 ~~~~----~~~~~~~~~~~~~ 95 (114)
+.+. +..+.++++++++
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~ 103 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLL 103 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEE
T ss_pred HhccCCCceeEEEECCCEEEE
Confidence 7665 4566777777654
No 5
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.63 E-value=6.1e-16 Score=107.25 Aligned_cols=94 Identities=7% Similarity=0.046 Sum_probs=81.9
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe----Cc-----ccCCC
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID----GS-----MFLPQ 72 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~----g~-----~~~p~ 72 (114)
+++.+.+.++|+++++|++|++++++.|+..+..+.|++|++||++||+++++|+|++|.|++. |+ ...||
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 4567778899999999999999999999999999999999999999999999999999999973 32 34599
Q ss_pred CcceeecccC----ceeeeeecCcccc
Q psy8804 73 SRNFVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 73 ~~fg~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.||+.+.+. ++.+.++++++++
T Consensus 110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~ 136 (161)
T 3idb_B 110 GSFGELALMYNTPRAATITATSPGALW 136 (161)
T ss_dssp CEECGGGGTCCCCCSSEEEESSSEEEE
T ss_pred CEechHHHHcCCCcccEEEECCCeEEE
Confidence 9999988886 5566777777654
No 6
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=1e-15 Score=105.60 Aligned_cols=94 Identities=5% Similarity=-0.027 Sum_probs=81.4
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe--Cc---ccCCCCcce
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID--GS---MFLPQSRNF 76 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g~---~~~p~~~fg 76 (114)
+++.+.+.++|+++++|++|++++++.|+..+..+.|++|++||++||+++++|+|++|.|++. |+ ...||+.||
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fG 109 (154)
T 3pna_A 30 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEEC
T ss_pred HHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEee
Confidence 3566778889999999999999999999999999999999999999999999999999999975 32 456999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 110 e~~~~~~~~~~~~v~A~~~~~~~ 132 (154)
T 3pna_A 110 ELALIYGTPRAATVKAKTNVKLW 132 (154)
T ss_dssp CHHHHHCCCCSSEEEESSCEEEE
T ss_pred ehHhhcCCCcceEEEECcceEEE
Confidence 888775 5566777777654
No 7
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-15 Score=110.13 Aligned_cols=91 Identities=10% Similarity=0.044 Sum_probs=78.7
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe--C---cccCCCCcceeec
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID--G---SMFLPQSRNFVFN 79 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g---~~~~p~~~fg~~~ 79 (114)
++.+.+.|+++++|++|++++++.|+..+..+.|++|++||++||+++++|+|++|.|++. | ....||+.||+.+
T Consensus 2 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~ 81 (246)
T 3of1_A 2 LQRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELA 81 (246)
T ss_dssp CHHHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHH
T ss_pred hHHHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhH
Confidence 4567889999999999999999999999999999999999999999999999999999985 3 2456999999877
Q ss_pred ccC----ceeeeeecCcccc
Q psy8804 80 VFS----PVFGLILNPSVSM 95 (114)
Q Consensus 80 ~~~----~~~~~~~~~~~~~ 95 (114)
.+. ++.+.++++++++
T Consensus 82 l~~~~~~~~tv~a~~~~~~~ 101 (246)
T 3of1_A 82 LMYNSPRAATVVATSDCLLW 101 (246)
T ss_dssp HHHTCCCSSEEEESSCEEEE
T ss_pred HhcCCCCCcEEEECCCeEEE
Confidence 765 4566777776643
No 8
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=5.2e-15 Score=111.60 Aligned_cols=94 Identities=10% Similarity=0.068 Sum_probs=82.2
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe--C---cccCCCCcce
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID--G---SMFLPQSRNF 76 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g---~~~~p~~~fg 76 (114)
+++++.+.+.|+++++|++|++++++.|+..+..+.|++|++||+|||+++++|+|++|.|++. | ....||+.||
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~~~~~~~~G~~fG 110 (299)
T 3shr_A 31 ERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFG 110 (299)
T ss_dssp HHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTEEEEEECTTCEES
T ss_pred HHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCEEEEEeCCCCeee
Confidence 4677888899999999999999999999999999999999999999999999999999999985 3 2456999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 111 e~~ll~~~~~~~tv~a~~~~~l~ 133 (299)
T 3shr_A 111 ELAILYNCTRTATVKTLVNVKLW 133 (299)
T ss_dssp CSGGGTTTBCCSEEEESSCEEEE
T ss_pred HhHHhcCCCCCcEEEEcCCeEEE
Confidence 988776 4466777776653
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.59 E-value=4.5e-15 Score=106.25 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=80.6
Q ss_pred hhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCC
Q psy8804 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQ 72 (114)
Q Consensus 3 ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~ 72 (114)
...+.+.+.|+++++|++|++++++.++..+..+.|++|++|+++||+++++|+|++|.|++. |+ ...||
T Consensus 32 ~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G 111 (187)
T 3gyd_A 32 KYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAG 111 (187)
T ss_dssp GGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETT
T ss_pred HHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCC
Confidence 566778899999999999999999999999999999999999999999999999999999963 32 45599
Q ss_pred CcceeecccC----ceeeeeecCcccc
Q psy8804 73 SRNFVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 73 ~~fg~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.||+.+.+. ++.+.++++++++
T Consensus 112 ~~fGe~~~l~~~~~~~~v~A~~~~~v~ 138 (187)
T 3gyd_A 112 AIIGEMSMIDGMPRSASCVASLPTDFA 138 (187)
T ss_dssp CEESHHHHHHCCCCSSEEEEEEEEEEE
T ss_pred CeeeeHHHhCCCCeeEEEEECCCeEEE
Confidence 9999888765 5566777777654
No 10
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.58 E-value=1e-14 Score=99.03 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=78.3
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCC
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQS 73 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~ 73 (114)
+.+.+.++|+++++|+.|++++++.++..+..++|++|++|+++||+++++|+|++|.|++. |+ ...||+
T Consensus 6 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~ 85 (154)
T 2z69_A 6 FQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERN 85 (154)
T ss_dssp HHHHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTE
T ss_pred CChhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCC
Confidence 34556789999999999999999999999999999999999999999999999999999974 43 455999
Q ss_pred cceeecccC-----ceeeeeecCcccc
Q psy8804 74 RNFVFNVFS-----PVFGLILNPSVSM 95 (114)
Q Consensus 74 ~fg~~~~~~-----~~~~~~~~~~~~~ 95 (114)
.||+.+.+. ++.+.++++++++
T Consensus 86 ~~G~~~~~~~~~~~~~~~~a~~~~~~~ 112 (154)
T 2z69_A 86 TFAEAMMFMDTPNYVATAQAVVPSQLF 112 (154)
T ss_dssp EESGGGGGSSCSBCSSEEEESSSEEEE
T ss_pred eeccHhhccCCCCCceEEEEccceEEE
Confidence 999988775 3456777777654
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.57 E-value=2.8e-15 Score=100.67 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc--------ccCCCCcce
Q psy8804 10 YGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS--------MFLPQSRNF 76 (114)
Q Consensus 10 ~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~--------~~~p~~~fg 76 (114)
+.|+++++|++|++++++.++..+..+.|++|++||++||+++++|+|++|.|++. |+ ...||+.||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 57999999999999999999999999999999999999999999999999999973 32 235999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 86 ~~~~~~~~~~~~~~~a~~~~~~~ 108 (142)
T 3mdp_A 86 VSSLIKPYHYTSSARATKPVRVV 108 (142)
T ss_dssp GGGSSTTCBCSSEEEESSCEEEE
T ss_pred hHHHcCCCCceEEEEECCcEEEE
Confidence 988876 4567788887754
No 12
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.56 E-value=8.4e-15 Score=98.80 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=75.7
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceee
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVF 78 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~ 78 (114)
.+.|+++++|++|++++++.++..+..+.|++|++|+++||+++++|+|++|.|++. |+ ...||+.||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 457999999999999999999999999999999999999999999999999999973 43 45599999998
Q ss_pred cccC----ceeeeeecCcccc
Q psy8804 79 NVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 79 ~~~~----~~~~~~~~~~~~~ 95 (114)
+.+. +..+.++++++++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~ 104 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLL 104 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEE
T ss_pred HhcCCCCcceEEEEccceEEE
Confidence 8776 4566777777654
No 13
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.56 E-value=1.6e-14 Score=98.92 Aligned_cols=87 Identities=16% Similarity=0.020 Sum_probs=76.0
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeC-----cccCCCCcceeecccCc
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDG-----SMFLPQSRNFVFNVFSP 83 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g-----~~~~p~~~fg~~~~~~~ 83 (114)
.+.|+++++|++|++++++.++..+..+.|++|++|+++||+++++|+|++|.|++.. ....||+.||+.+.+..
T Consensus 26 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fG~~~~~~~ 105 (160)
T 4f8a_A 26 RKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEA 105 (160)
T ss_dssp HHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETTEEEEEEETTCEEECCTTTCS
T ss_pred HHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECCEEEEEecCCCEeCcHHHhcC
Confidence 4689999999999999999999999999999999999999999999999999999852 24559999999887753
Q ss_pred ------eeeeeecCcccc
Q psy8804 84 ------VFGLILNPSVSM 95 (114)
Q Consensus 84 ------~~~~~~~~~~~~ 95 (114)
+.+.++++++++
T Consensus 106 ~~~~~~~~~~a~~~~~v~ 123 (160)
T 4f8a_A 106 TLAQSCANVRALTYCDLH 123 (160)
T ss_dssp SCCBCSSEEEESSCEEEE
T ss_pred cccceEEEEEECCceEEE
Confidence 456777777654
No 14
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.54 E-value=1.1e-14 Score=109.04 Aligned_cols=94 Identities=5% Similarity=-0.022 Sum_probs=81.8
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe--C---cccCCCCcce
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID--G---SMFLPQSRNF 76 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g---~~~~p~~~fg 76 (114)
.++.+.+...|+++++|++|++++++.++..+..+.|++|++||++||+++++|+|++|.|++. | ....||+.||
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~fG 110 (291)
T 2qcs_B 31 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG 110 (291)
T ss_dssp HHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTCEEC
T ss_pred HHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCCccc
Confidence 4667788899999999999999999999999999999999999999999999999999999974 4 3556999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 111 e~~l~~~~~~~~tv~a~~~~~~~ 133 (291)
T 2qcs_B 111 ELALIYGTPRAATVKAKTNVKLW 133 (291)
T ss_dssp GGGGTCCCBCSSEEEESSCEEEE
T ss_pred hHHHhcCCCCceEEEECCCEEEE
Confidence 988776 4566777776653
No 15
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.52 E-value=5.3e-14 Score=112.18 Aligned_cols=93 Identities=22% Similarity=0.383 Sum_probs=81.8
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-------cc
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-------MF 69 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-------~~ 69 (114)
+++.+.+.+.|+++++|++|++++++.|+..+..+.|++|++||++||+++++|+|++|.|++. |+ ..
T Consensus 34 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~ 113 (469)
T 1o7f_A 34 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTL 113 (469)
T ss_dssp HHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEE
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEc
Confidence 4678889999999999999999999999999999999999999999999999999999999973 32 44
Q ss_pred CCCCcceeecccC----ceeeeeecCcccc
Q psy8804 70 LPQSRNFVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 70 ~p~~~fg~~~~~~----~~~~~~~~~~~~~ 95 (114)
.||+.||+.+ +. ++.+.++++++++
T Consensus 114 ~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~ 142 (469)
T 1o7f_A 114 GIGTAFGESI-LDNTPRHATIVTRESSELL 142 (469)
T ss_dssp CTTCEECGGG-GGTCBCSSEEEESSSEEEE
T ss_pred cCCCCcchhh-hCCCCccceEEEccceeEE
Confidence 5999999988 65 5677788877754
No 16
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=113.70 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=82.4
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe--Cc---ccCCCCcce
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID--GS---MFLPQSRNF 76 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g~---~~~p~~~fg 76 (114)
+++.+.+.+.|+++++|++|++++++.|+..+..+.|++|++||+|||+++++|+|++|.|++. |+ ...||+.||
T Consensus 122 ~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fG 201 (381)
T 4din_B 122 YKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFG 201 (381)
T ss_dssp HHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCCBC
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEE
Confidence 4567778899999999999999999999999999999999999999999999999999999975 43 455999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 202 e~all~~~~r~atv~A~~~~~l~ 224 (381)
T 4din_B 202 ELALIYGTPRAATVKAKTDLKLW 224 (381)
T ss_dssp GGGGTSCCBCSSEEEESSSCEEE
T ss_pred chHHhcCCCcceEEEECCCEEEE
Confidence 998887 4566777777654
No 17
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.51 E-value=1.6e-14 Score=104.22 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcce
Q psy8804 7 IIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNF 76 (114)
Q Consensus 7 ~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg 76 (114)
.+.++|+++++|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||
T Consensus 6 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G 85 (227)
T 3dkw_A 6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA 85 (227)
T ss_dssp SSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEES
T ss_pred hHHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee
Confidence 34689999999999999999999999999999999999999999999999999999963 32 344999999
Q ss_pred eecccC-----ceeeeeecCcccc
Q psy8804 77 VFNVFS-----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~-----~~~~~~~~~~~~~ 95 (114)
+.+.|. ++.+.++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~~v~ 109 (227)
T 3dkw_A 86 EAMMFMDTPNYVATAQAVVPSQLF 109 (227)
T ss_dssp CTTTTTTCSBCSSCEEESSCCEEE
T ss_pred eHHhcCCCCCCceEEEEcCcEEEE
Confidence 988774 3566777877754
No 18
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.51 E-value=1.7e-14 Score=96.86 Aligned_cols=86 Identities=9% Similarity=0.093 Sum_probs=75.1
Q ss_pred HHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe----Cc-------ccCCCCcceee
Q psy8804 10 YGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID----GS-------MFLPQSRNFVF 78 (114)
Q Consensus 10 ~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~----g~-------~~~p~~~fg~~ 78 (114)
++|+++++|+.|++++++.|+..+..++|++|++||+|||+++++|+|++|.|++. |+ ...||+.||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 57899999999999999999999999999999999999999999999999999963 42 44599999988
Q ss_pred cc---cC----------ceeeeeecCcccc
Q psy8804 79 NV---FS----------PVFGLILNPSVSM 95 (114)
Q Consensus 79 ~~---~~----------~~~~~~~~~~~~~ 95 (114)
+. +. ++.+.++++++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 115 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAF 115 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEE
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEE
Confidence 74 54 3577888888764
No 19
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.51 E-value=3.8e-14 Score=101.51 Aligned_cols=87 Identities=10% Similarity=0.039 Sum_probs=76.5
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe---Cc---ccCCCCcceeecccC
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID---GS---MFLPQSRNFVFNVFS 82 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~---g~---~~~p~~~fg~~~~~~ 82 (114)
...|+++++|++++++.++.|+..+..+.|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+.+.
T Consensus 70 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~ 149 (198)
T 2ptm_A 70 RDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLT 149 (198)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHH
T ss_pred HHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcC
Confidence 468999999999999999999999999999999999999999999999999999984 43 556999999987765
Q ss_pred ----ceeeeeecCcccc
Q psy8804 83 ----PVFGLILNPSVSM 95 (114)
Q Consensus 83 ----~~~~~~~~~~~~~ 95 (114)
++.+.++++++++
T Consensus 150 ~~~~~~~~~a~~~~~l~ 166 (198)
T 2ptm_A 150 RERRVASVKCETYCTLF 166 (198)
T ss_dssp SSCCSSEEEESSCEEEE
T ss_pred CCccceEEEEeeEEEEE
Confidence 5567777777754
No 20
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.51 E-value=1.8e-14 Score=104.31 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=76.8
Q ss_pred HHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCccee
Q psy8804 8 IYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFV 77 (114)
Q Consensus 8 i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~ 77 (114)
+.+.|+++++|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~ 83 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGE 83 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEee
Confidence 3578999999999999999999999999999999999999999999999999999973 43 4559999998
Q ss_pred ecccC----ceeeeeecCcccc
Q psy8804 78 FNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 78 ~~~~~----~~~~~~~~~~~~~ 95 (114)
.+.+. ++.+.++++++++
T Consensus 84 ~~~~~~~~~~~~~~A~~~~~v~ 105 (227)
T 3d0s_A 84 LSIFDPGPRTSSATTITEVRAV 105 (227)
T ss_dssp HHHHSCSCCSSEEEESSCEEEE
T ss_pred HHHcCCCCceeEEEEcccEEEE
Confidence 88776 4566778887754
No 21
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.49 E-value=4.4e-14 Score=113.47 Aligned_cols=94 Identities=7% Similarity=0.046 Sum_probs=81.4
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe----Cc-----ccCCC
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID----GS-----MFLPQ 72 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~----g~-----~~~p~ 72 (114)
+++.+.+...|+++++|++|++++++.|+..+..+.|++|++||+|||+++++|+|++|.|++. |+ ...||
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G 216 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 216 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCC
Confidence 4677888999999999999999999999999999999999999999999999999999999974 32 35599
Q ss_pred CcceeecccC----ceeeeeecCcccc
Q psy8804 73 SRNFVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 73 ~~fg~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.||+.+.+. ++.+.++++++++
T Consensus 217 ~~fGe~all~~~pr~atv~A~~d~~l~ 243 (416)
T 3tnp_B 217 GSFGELALMYNTPKAATITATSPGALW 243 (416)
T ss_dssp CEECGGGGTSCCCCSSEEEESSSEEEE
T ss_pred CEEeeHHHhcCCCcccEEEEccCeEEE
Confidence 9999988876 4456677776653
No 22
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.49 E-value=2.4e-14 Score=103.91 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=75.7
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceee
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVF 78 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~ 78 (114)
.++|+++++|++|++++++.++..+..+.|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 578999999999999999999999999999999999999999999999999999963 32 44599999988
Q ss_pred cccC----ceeeeeecCcccc
Q psy8804 79 NVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 79 ~~~~----~~~~~~~~~~~~~ 95 (114)
+.+. ++.+.++++++++
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~ 105 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTL 105 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEE
T ss_pred HHhCCCCceEEEEECCcEEEE
Confidence 8776 4566777877654
No 23
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.49 E-value=4e-14 Score=101.40 Aligned_cols=84 Identities=12% Similarity=0.204 Sum_probs=70.9
Q ss_pred hhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeeccc
Q psy8804 12 LHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVF 81 (114)
Q Consensus 12 Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~ 81 (114)
|+++|+|++|++++++.++..+..+.|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 578999999999999999999999999999999999999999999999999973 43 45699999987766
Q ss_pred C----ceeeeeecCcccc
Q psy8804 82 S----PVFGLILNPSVSM 95 (114)
Q Consensus 82 ~----~~~~~~~~~~~~~ 95 (114)
. ++.+.++++++++
T Consensus 81 ~~~~~~~~~~a~~~~~v~ 98 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELL 98 (216)
T ss_dssp HCCBCSSEEEESSSEEEE
T ss_pred CCCCcceEEEEcCCEEEE
Confidence 5 5667778877754
No 24
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.49 E-value=2.7e-14 Score=104.06 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcc
Q psy8804 6 QIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRN 75 (114)
Q Consensus 6 e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~f 75 (114)
+...++|+++++|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 345689999999999999999999999999999999999999999999999999999963 32 34599999
Q ss_pred eeecccC----ceeeeeecCcccc
Q psy8804 76 FVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 76 g~~~~~~----~~~~~~~~~~~~~ 95 (114)
|+.+.|. ++.+.++++++++
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~ 110 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVM 110 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEE
T ss_pred chHHHhcCCCCCceEEECCceEEE
Confidence 9887765 5567778877754
No 25
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.48 E-value=6.7e-14 Score=100.46 Aligned_cols=87 Identities=6% Similarity=-0.098 Sum_probs=73.3
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCc--ce
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSR--NF 76 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~--fg 76 (114)
+++|+++|+|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+. ||
T Consensus 2 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g 81 (220)
T 3dv8_A 2 MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLS 81 (220)
T ss_dssp ---CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGG
T ss_pred cchHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehh
Confidence 468999999999999999999999999999999999999999999999999999973 43 4459999 78
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. +..+.++++++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (220)
T 3dv8_A 82 ASCIMRSIQFEVTIEAEKDTDLW 104 (220)
T ss_dssp GGGGCTTCCCCCEEEESSCEEEE
T ss_pred HHHHhCCCCCceEEEEeeeeEEE
Confidence 877776 4566778887754
No 26
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.48 E-value=8.9e-14 Score=100.43 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=65.0
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcce
Q psy8804 7 IIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNF 76 (114)
Q Consensus 7 ~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg 76 (114)
.+...|++.++|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||
T Consensus 8 ~~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G 87 (230)
T 3iwz_A 8 VVTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVG 87 (230)
T ss_dssp --------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred eehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEE
Confidence 34578999999999999999999999999999999999999999999999999999973 43 356999999
Q ss_pred eecccC-----ceeeeeecCcccc
Q psy8804 77 VFNVFS-----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~-----~~~~~~~~~~~~~ 95 (114)
+.+.|. ++.+.++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~v~ 111 (230)
T 3iwz_A 88 EMGLFIESDTREVILRTRTQCELA 111 (230)
T ss_dssp CGGGTSCCSBCCSEEEESSCEEEE
T ss_pred ehhhhcCCCCceeEEEEcCcEEEE
Confidence 988875 2455777777654
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.48 E-value=1.1e-13 Score=101.36 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=76.9
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHhh--cceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCc
Q psy8804 7 IIYYGLHGLEALAPYRDSVLRSLCRV--VRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSR 74 (114)
Q Consensus 7 ~i~~~Lr~v~lF~~L~~~~l~~La~~--~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~ 74 (114)
.....|+++++|++|++++++.++.. +..++|++|++||++||+++++|+|++|.|++. |+ ...||+.
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~ 94 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL 94 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCe
Confidence 34678999999999999999999998 999999999999999999999999999999973 42 4459999
Q ss_pred ceeecccC-----ceeeeeecCcccc
Q psy8804 75 NFVFNVFS-----PVFGLILNPSVSM 95 (114)
Q Consensus 75 fg~~~~~~-----~~~~~~~~~~~~~ 95 (114)
||+.+.|. ++.+.++++++++
T Consensus 95 fG~~~~~~~~~~~~~~~~A~~~~~v~ 120 (232)
T 1zyb_A 95 IEPQSLFGMNTNYASSYVAHTEVHTV 120 (232)
T ss_dssp ECGGGGSSSCCBCSSEEEESSCEEEE
T ss_pred eeehHHhCCCCCCceEEEEccceEEE
Confidence 99988775 3466778887754
No 28
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.47 E-value=1.8e-13 Score=109.16 Aligned_cols=93 Identities=30% Similarity=0.428 Sum_probs=78.6
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhccee-EecCCCEEEecCCCCCeEEEEEeeeEEEe--Cc----ccCCCCc
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYE-RHQANDVLYYTGELSTSWYILLSGSVFID--GS----MFLPQSR 74 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~-~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g~----~~~p~~~ 74 (114)
.+|++.+.++|+++++|++|++++++.|+..+... .|++|++||+|||+++++|+|++|.|++. |+ ...||+.
T Consensus 329 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~ 408 (469)
T 1o7f_A 329 VDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDD 408 (469)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCE
T ss_pred HHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCE
Confidence 36788889999999999999999999999998854 89999999999999999999999999984 33 4459999
Q ss_pred ceeecccC----ceeeeeec-Cccc
Q psy8804 75 NFVFNVFS----PVFGLILN-PSVS 94 (114)
Q Consensus 75 fg~~~~~~----~~~~~~~~-~~~~ 94 (114)
||+.+.+. ++.+.+++ ++++
T Consensus 409 fGe~~ll~~~~~~~tv~a~~~~~~~ 433 (469)
T 1o7f_A 409 FGKLALVNDAPRAASIVLREDNCHF 433 (469)
T ss_dssp ECGGGGTCCSCCSSEEEESSSSEEE
T ss_pred EEEehhhcCCCceEEEEEecCCEEE
Confidence 99988876 34555665 4554
No 29
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.47 E-value=4.8e-14 Score=101.44 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=75.8
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe---C--cccCCCCcceeecccC-
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID---G--SMFLPQSRNFVFNVFS- 82 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~---g--~~~~p~~~fg~~~~~~- 82 (114)
...|+++++|++++++.++.|+..+..+.|++|++||++||+++++|+|++|.|++. | ....||+.||+.+.+.
T Consensus 71 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~ 150 (202)
T 3bpz_A 71 RKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR 150 (202)
T ss_dssp HHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHHC
T ss_pred HHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHhcC
Confidence 468999999999999999999999999999999999999999999999999999984 2 2556999999877765
Q ss_pred ---ceeeeeecCcccc
Q psy8804 83 ---PVFGLILNPSVSM 95 (114)
Q Consensus 83 ---~~~~~~~~~~~~~ 95 (114)
++.+.++++++++
T Consensus 151 ~~~~~~v~a~~~~~l~ 166 (202)
T 3bpz_A 151 GRRTASVRADTYCRLY 166 (202)
T ss_dssp SBCSSEEEESSCEEEE
T ss_pred CCcccEEEEeeEEEEE
Confidence 5566777777654
No 30
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.46 E-value=3.7e-14 Score=108.61 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=75.0
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----C----cccCCCCcceeec
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----G----SMFLPQSRNFVFN 79 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g----~~~~p~~~fg~~~ 79 (114)
.++|+++++|++|++++++.|+..+..++|++|++||++||+++++|+|++|.|++. | ....||+.||+.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 478999999999999999999999999999999999999999999999999999973 2 2345999999887
Q ss_pred ccC----ceeeeeecCcccc
Q psy8804 80 VFS----PVFGLILNPSVSM 95 (114)
Q Consensus 80 ~~~----~~~~~~~~~~~~~ 95 (114)
.+. ++.+.++++++++
T Consensus 92 l~~~~~~~~~v~A~~~~~~~ 111 (333)
T 4ava_A 92 LLRDSPRSATVTTIEPLTGW 111 (333)
T ss_dssp HHHTCBCSSEEEESSCEEEE
T ss_pred hcCCCCceEEEEEecCEEEE
Confidence 665 4566777776644
No 31
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.46 E-value=8.2e-14 Score=98.66 Aligned_cols=86 Identities=10% Similarity=0.112 Sum_probs=73.1
Q ss_pred HHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeec
Q psy8804 10 YGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFN 79 (114)
Q Consensus 10 ~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~ 79 (114)
.+++.++.|.+|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+..
T Consensus 7 ~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~ 86 (194)
T 3dn7_A 7 ALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYM 86 (194)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehH
Confidence 36777889999999999999999999999999999999999999999999999963 43 345999999874
Q ss_pred c-cC----ceeeeeecCcccc
Q psy8804 80 V-FS----PVFGLILNPSVSM 95 (114)
Q Consensus 80 ~-~~----~~~~~~~~~~~~~ 95 (114)
. +. +..+.++++++++
T Consensus 87 ~~~~~~~~~~~~~a~~~~~v~ 107 (194)
T 3dn7_A 87 AFQKQQPADFYIQSVENCELL 107 (194)
T ss_dssp HHHHTCBCSSEEEESSCEEEE
T ss_pred HHhcCCCCceEEEEECCEEEE
Confidence 3 32 5677888887754
No 32
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.43 E-value=4.9e-13 Score=96.60 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=73.5
Q ss_pred HhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe--C---cccCCCCcceeecccCc--
Q psy8804 11 GLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID--G---SMFLPQSRNFVFNVFSP-- 83 (114)
Q Consensus 11 ~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g---~~~~p~~~fg~~~~~~~-- 83 (114)
.|.++|+|++++++.++.|+..+..+.|++|++||++||+++++|+|++|.|++. | ....||+.||+.+.+..
T Consensus 76 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 76 ELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp GGGGSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSSSC
T ss_pred HHHhcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccCCC
Confidence 4568999999999999999999999999999999999999999999999999985 3 25569999999888763
Q ss_pred ----eeeeeecCcccc
Q psy8804 84 ----VFGLILNPSVSM 95 (114)
Q Consensus 84 ----~~~~~~~~~~~~ 95 (114)
+.+.++++++++
T Consensus 156 ~~~~~~v~a~~~~~l~ 171 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQ 171 (212)
T ss_dssp CBBCSEEEESSCEEEE
T ss_pred CCcceEEEEcccEEEE
Confidence 455777777654
No 33
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.41 E-value=5.5e-13 Score=116.40 Aligned_cols=81 Identities=36% Similarity=0.554 Sum_probs=72.5
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEe-cCCCEEEecCCCCCeEEEEEeeeEEEe--Cc----ccCCCCc
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSGSVFID--GS----MFLPQSR 74 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~-~~G~~If~qGd~~~~~yiIlsG~VkI~--g~----~~~p~~~ 74 (114)
.+|++.+.++|+++++|+.|+...++.||..+..+.+ ++|++||+|||++++||||++|+|.|. ++ ...||+.
T Consensus 329 ~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~ 408 (999)
T 4f7z_A 329 VDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDD 408 (999)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCE
T ss_pred HHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCc
Confidence 4678889999999999999999999999999998776 789999999999999999999999985 32 3559999
Q ss_pred ceeecccC
Q psy8804 75 NFVFNVFS 82 (114)
Q Consensus 75 fg~~~~~~ 82 (114)
||+++.+.
T Consensus 409 FGElALL~ 416 (999)
T 4f7z_A 409 FGKLALVN 416 (999)
T ss_dssp ECGGGGTC
T ss_pred ccchhhcc
Confidence 99988885
No 34
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.37 E-value=3.7e-13 Score=97.67 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC-
Q psy8804 14 GLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS- 82 (114)
Q Consensus 14 ~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~- 82 (114)
.+|+|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+.+.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 5789999999999999999999999999999999999999999999999974 43 445999999887765
Q ss_pred ---ceeeeeecCcccc
Q psy8804 83 ---PVFGLILNPSVSM 95 (114)
Q Consensus 83 ---~~~~~~~~~~~~~ 95 (114)
+..+.++++++++
T Consensus 94 ~~~~~~~~A~~~~~v~ 109 (232)
T 2gau_A 94 ETCSSTAIAVENSKVL 109 (232)
T ss_dssp SCCSSEEEESSCEEEE
T ss_pred CCcceEEEEecceEEE
Confidence 4567788887754
No 35
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.36 E-value=6e-13 Score=100.25 Aligned_cols=90 Identities=9% Similarity=0.088 Sum_probs=76.9
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe------Cc-----ccCCCCc
Q psy8804 6 QIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID------GS-----MFLPQSR 74 (114)
Q Consensus 6 e~i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~------g~-----~~~p~~~ 74 (114)
+.+..+|+++++|+.+++++++.++..+..+.|++|++|+++||+++++|+|++|.|++. |+ ...||+.
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 345678999999999999999999999999999999999999999999999999999974 21 3459999
Q ss_pred ceeecccC----ceeeeeecCcccc
Q psy8804 75 NFVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 75 fg~~~~~~----~~~~~~~~~~~~~ 95 (114)
||+.+.+. ++.+.++++++++
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~l~ 257 (299)
T 3shr_A 233 FGEKALQGEDVRTANVIAAEAVTCL 257 (299)
T ss_dssp ECGGGGSSSEECSSEEEESSSEEEE
T ss_pred eChHHHhCCCCcceEEEECCCEEEE
Confidence 99988887 4566677776654
No 36
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1e-12 Score=95.26 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=74.1
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeC------cccCCCCcceeecccC
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDG------SMFLPQSRNFVFNVFS 82 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g------~~~~p~~~fg~~~~~~ 82 (114)
..+++++++|+.+++.+++.++.....+.|++|++|++|||+++++|+|++|.|++.. ....||+.||+.+.+.
T Consensus 124 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~ 203 (246)
T 3of1_A 124 DDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLN 203 (246)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHH
T ss_pred HHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhC
Confidence 4688999999999999999999999999999999999999999999999999999752 2345999999887774
Q ss_pred ----ceeeeeecCcccc
Q psy8804 83 ----PVFGLILNPSVSM 95 (114)
Q Consensus 83 ----~~~~~~~~~~~~~ 95 (114)
++.+.++++++++
T Consensus 204 ~~~~~~~v~a~~~~~~~ 220 (246)
T 3of1_A 204 DLPRQATVTATKRTKVA 220 (246)
T ss_dssp TCBCSSEEEESSCEEEE
T ss_pred CCCcccEEEECCCEEEE
Confidence 4455666666543
No 37
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.36 E-value=1.3e-12 Score=111.78 Aligned_cols=94 Identities=29% Similarity=0.394 Sum_probs=80.1
Q ss_pred hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhhcc-eeEecCCCEEEecCCCCCeEEEEEeeeEEEe--Cc----ccCCCCc
Q psy8804 2 ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVR-YERHQANDVLYYTGELSTSWYILLSGSVFID--GS----MFLPQSR 74 (114)
Q Consensus 2 ~ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~-~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~--g~----~~~p~~~ 74 (114)
.++++.+.+.|+++++|++|++++++.|+..+. .++|++|++||++||+++++|+|++|+|++. |+ ...||+.
T Consensus 24 ~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l~~Gd~ 103 (694)
T 3cf6_E 24 VDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDD 103 (694)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCE
T ss_pred HHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCCEEEEEeCCCCE
Confidence 367778889999999999999999999999997 6899999999999999999999999999974 43 4459999
Q ss_pred ceeecccC----ceeeeeec-Ccccc
Q psy8804 75 NFVFNVFS----PVFGLILN-PSVSM 95 (114)
Q Consensus 75 fg~~~~~~----~~~~~~~~-~~~~~ 95 (114)
||+.+.|. ++.+.+++ +++++
T Consensus 104 fGe~al~~~~~~~~tv~A~edd~~ll 129 (694)
T 3cf6_E 104 FGKLALVNDAPRAASIVLREDNCHFL 129 (694)
T ss_dssp ECHHHHHHTCBCSSEEEECSSSEEEE
T ss_pred eehHHHhCCCCceEEEEEeeCceEEE
Confidence 99887765 45667777 36654
No 38
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.36 E-value=2.2e-13 Score=98.32 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=72.7
Q ss_pred HHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEE----eCc-----ccCCCCcceeecc
Q psy8804 10 YGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFI----DGS-----MFLPQSRNFVFNV 80 (114)
Q Consensus 10 ~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI----~g~-----~~~p~~~fg~~~~ 80 (114)
.+|+++++|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++ +|+ ...||+.||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence 4689999999999999999999999999999999999999999999999999997 353 4459999998
Q ss_pred cCceeeeeecCcccc
Q psy8804 81 FSPVFGLILNPSVSM 95 (114)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (114)
-.++.+.++++++++
T Consensus 81 ~~~~~~~A~~~~~v~ 95 (220)
T 2fmy_A 81 HTRAFIQAMEDTTIL 95 (220)
T ss_dssp CSSSEEEESSSEEEE
T ss_pred ccceEEEEcCcEEEE
Confidence 456677778887754
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.35 E-value=4.2e-12 Score=94.92 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=75.7
Q ss_pred HHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----C-c-----ccCCCCcce
Q psy8804 8 IYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----G-S-----MFLPQSRNF 76 (114)
Q Consensus 8 i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g-~-----~~~p~~~fg 76 (114)
+..+++++++|+.+++.++..++.....+.|++|++|+++||+++++|+|++|+|++. | + ...||+.||
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG 234 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG 234 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence 3468899999999999999999999999999999999999999999999999999974 2 1 345999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 235 e~~ll~~~~~~~tv~a~~~~~~~ 257 (291)
T 2qcs_B 235 EIALLMNRPKAATVVARGPLKCV 257 (291)
T ss_dssp SGGGTCCCCCSSEEEEEEEEEEE
T ss_pred HHHHcCCCCcceEEEECCcEEEE
Confidence 988876 4566777776654
No 40
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.32 E-value=3.5e-13 Score=97.60 Aligned_cols=82 Identities=6% Similarity=-0.008 Sum_probs=69.8
Q ss_pred HhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEE----eCc-----ccCCCCcceeeccc
Q psy8804 11 GLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFI----DGS-----MFLPQSRNFVFNVF 81 (114)
Q Consensus 11 ~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI----~g~-----~~~p~~~fg~~~~~ 81 (114)
+|+++++|++|++++++.++..+..++|++|++||++||+++++|+|++|.|++ +|+ ...||+.|| .-
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG---~~ 77 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC---MH 77 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE---SC
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec---CC
Confidence 478999999999999999999999999999999999999999999999999997 343 445999999 33
Q ss_pred CceeeeeecCcccc
Q psy8804 82 SPVFGLILNPSVSM 95 (114)
Q Consensus 82 ~~~~~~~~~~~~~~ 95 (114)
.++.+.++++++++
T Consensus 78 ~~~~~~A~~~~~v~ 91 (222)
T 1ft9_A 78 SGCLVEATERTEVR 91 (222)
T ss_dssp SSCEEEESSCEEEE
T ss_pred CCEEEEEccceEEE
Confidence 46666777777654
No 41
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.28 E-value=6.6e-12 Score=89.39 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC---
Q psy8804 16 EALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS--- 82 (114)
Q Consensus 16 ~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~--- 82 (114)
.+++.+++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+.|.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 47788999999999999999999999999999999999999999999973 32 345999999988776
Q ss_pred --ceeeeeecCcccc
Q psy8804 83 --PVFGLILNPSVSM 95 (114)
Q Consensus 83 --~~~~~~~~~~~~~ 95 (114)
++.+.++++++++
T Consensus 82 ~~~~~~~a~~~~~v~ 96 (210)
T 3ryp_A 82 ERSAWVRAKTACEVA 96 (210)
T ss_dssp BCSSEEEESSCEEEE
T ss_pred CceEEEEECCcEEEE
Confidence 3455777877754
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.23 E-value=2.4e-11 Score=97.54 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=72.5
Q ss_pred HHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----------C-----cccCCCC
Q psy8804 10 YGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----------G-----SMFLPQS 73 (114)
Q Consensus 10 ~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----------g-----~~~~p~~ 73 (114)
.+++++++|+.|++.++..++..+..+.|++|++||++||+++++|+|++|.|++. | ....||+
T Consensus 267 ~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~ 346 (416)
T 3tnp_B 267 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQ 346 (416)
T ss_dssp SSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTC
T ss_pred HHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCC
Confidence 46888999999999999999999999999999999999999999999999999974 2 1345999
Q ss_pred cceeecccC----ceeeeeecCccc
Q psy8804 74 RNFVFNVFS----PVFGLILNPSVS 94 (114)
Q Consensus 74 ~fg~~~~~~----~~~~~~~~~~~~ 94 (114)
.||+.+.|. ++.+.+++++++
T Consensus 347 ~fGE~all~~~~r~~tv~A~~~~~l 371 (416)
T 3tnp_B 347 YFGELALVTNKPRAASAHAIGTVKC 371 (416)
T ss_dssp EESGGGGTCCSCCSSEEEEEEEEEE
T ss_pred EecHHHHhCCCCceeEEEEcCCeEE
Confidence 999998886 445566666554
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=97.40 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=75.1
Q ss_pred HHHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc------ccCCCCcce
Q psy8804 8 IYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS------MFLPQSRNF 76 (114)
Q Consensus 8 i~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~------~~~p~~~fg 76 (114)
...+++++++|..|++.++..++.....+.|++|++|++|||+++++|+|++|.|++. |+ ...||+.||
T Consensus 246 ~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fG 325 (381)
T 4din_B 246 YEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFG 325 (381)
T ss_dssp HHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEEC
T ss_pred HHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEec
Confidence 4468999999999999999999999999999999999999999999999999999974 21 244999999
Q ss_pred eecccC----ceeeeeecCcccc
Q psy8804 77 VFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~ 95 (114)
+.+.+. ++.+.++++++++
T Consensus 326 e~all~~~~r~~tv~A~~~~~ll 348 (381)
T 4din_B 326 EIALLLNRPRAATVVARGPLKCV 348 (381)
T ss_dssp TTGGGSCCBCSSEEEESSCBEEE
T ss_pred hHHHhCCCCceeEEEEcCCEEEE
Confidence 988886 4456666666543
No 44
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.20 E-value=2.7e-11 Score=90.31 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=62.9
Q ss_pred HHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeec
Q psy8804 10 YGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFN 79 (114)
Q Consensus 10 ~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~ 79 (114)
..++...++..|++++++.|+..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+
T Consensus 46 ~~i~~~~~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~ 125 (260)
T 3kcc_A 46 ADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 125 (260)
T ss_dssp -------------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehH
Confidence 33443334578999999999999999999999999999999999999999999974 32 345999999988
Q ss_pred ccC-----ceeeeeecCcccc
Q psy8804 80 VFS-----PVFGLILNPSVSM 95 (114)
Q Consensus 80 ~~~-----~~~~~~~~~~~~~ 95 (114)
.|. ++.+.++++++++
T Consensus 126 ~~~~~~~~~~~~~A~~~~~l~ 146 (260)
T 3kcc_A 126 LFEEGQERSAWVRAKTACEVA 146 (260)
T ss_dssp TTSTTCBCCSEEEESSCEEEE
T ss_pred HhCCCCCCceEEEECCCeEEE
Confidence 776 3456777887754
No 45
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.17 E-value=6.5e-11 Score=84.01 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=63.7
Q ss_pred CCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC--------
Q psy8804 21 YRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS-------- 82 (114)
Q Consensus 21 L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~-------- 82 (114)
|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+.|.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 689999999999999999999999999999999999999999974 43 445999999887765
Q ss_pred ceeeeeecCcccc
Q psy8804 83 PVFGLILNPSVSM 95 (114)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (114)
++.+.++++++++
T Consensus 81 ~~~~~A~~~~~v~ 93 (207)
T 2oz6_A 81 SAWVRAKVECEVA 93 (207)
T ss_dssp CSEEEESSCEEEE
T ss_pred ceEEEECCcEEEE
Confidence 2455777777654
No 46
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.10 E-value=9.8e-12 Score=97.09 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=0.9
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeC---cccCCCCcceeecccC---
Q psy8804 9 YYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDG---SMFLPQSRNFVFNVFS--- 82 (114)
Q Consensus 9 ~~~Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g---~~~~p~~~fg~~~~~~--- 82 (114)
.+.++++++|+++++++++.++.....+.|++|++|++|||+++++|+|++|+|++.. ....||+.||+.+.+.
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~l~~G~~fGe~~~l~~~~ 306 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAFFGEMALISGEP 306 (355)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECCeeEECCCCEEeehHHhCCCC
Confidence 3578999999999999999999999999999999999999999999999999999752 3566999999987776
Q ss_pred -ceeeeeecCcccc
Q psy8804 83 -PVFGLILNPSVSM 95 (114)
Q Consensus 83 -~~~~~~~~~~~~~ 95 (114)
++.+.++++++++
T Consensus 307 ~~~~~~A~~~~~l~ 320 (355)
T 3beh_A 307 RSATVSAATTVSLL 320 (355)
T ss_dssp --------------
T ss_pred cceEEEECccEEEE
Confidence 4556777777754
No 47
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.10 E-value=5.2e-11 Score=85.89 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=62.4
Q ss_pred CCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC--
Q psy8804 15 LEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS-- 82 (114)
Q Consensus 15 v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~-- 82 (114)
-|.|...++++.+.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+.|.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 478899999999999999999999999999999999999999999999973 43 455999999988764
Q ss_pred ---ceeeeeecCcccc
Q psy8804 83 ---PVFGLILNPSVSM 95 (114)
Q Consensus 83 ---~~~~~~~~~~~~~ 95 (114)
++.+.++++++++
T Consensus 84 ~~~~~~~~A~~~~~v~ 99 (213)
T 1o5l_A 84 PRFPVNVVAGENSKIL 99 (213)
T ss_dssp CBCSSEEEESSSEEEE
T ss_pred CCceEEEEEccceEEE
Confidence 4567888887754
No 48
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.07 E-value=1.3e-10 Score=85.58 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=67.7
Q ss_pred hhCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeeccc
Q psy8804 12 LHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVF 81 (114)
Q Consensus 12 Lr~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~ 81 (114)
+.....|..|++++++.++..+..++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+ .|
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence 444445699999999999999999999999999999999999999999999973 32 3459999998 44
Q ss_pred C---ceeeeeecCcccc
Q psy8804 82 S---PVFGLILNPSVSM 95 (114)
Q Consensus 82 ~---~~~~~~~~~~~~~ 95 (114)
. ++.+.++++++++
T Consensus 89 ~~~~~~~~~A~~~~~v~ 105 (250)
T 3e6c_C 89 PTGNNIYATAMEPTRTC 105 (250)
T ss_dssp CCSCCEEEEESSSEEEE
T ss_pred CCCCceEEEEcccEEEE
Confidence 4 5566777777654
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.02 E-value=5.3e-10 Score=81.81 Aligned_cols=63 Identities=5% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHh--hcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC
Q psy8804 19 APYRDSVLRSLCR--VVRYERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS 82 (114)
Q Consensus 19 ~~L~~~~l~~La~--~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~ 82 (114)
++|++++++.+.. .+..++|++|++||++||+++++|+|++|.|++. |+ .. ||+.||+.+.|.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~ 76 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFID 76 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTT
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhc
Confidence 4789999999874 5899999999999999999999999999999973 42 44 999999988776
No 50
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.93 E-value=1.5e-09 Score=79.75 Aligned_cols=73 Identities=19% Similarity=0.377 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcc---eeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC--c----
Q psy8804 23 DSVLRSLCRVVR---YERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS--P---- 83 (114)
Q Consensus 23 ~~~l~~La~~~~---~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~--~---- 83 (114)
++.++.|+..+. .++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+.+.+. |
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 788889999999 9999999999999999999999999999973 43 456999999988775 2
Q ss_pred eeeeeecCcccc
Q psy8804 84 VFGLILNPSVSM 95 (114)
Q Consensus 84 ~~~~~~~~~~~~ 95 (114)
..+.++++++++
T Consensus 110 ~~~~A~~~~~v~ 121 (243)
T 3la7_A 110 YHAVAFTPVELL 121 (243)
T ss_dssp EEEEESSSEEEE
T ss_pred EEEEEccceEEE
Confidence 566788887754
No 51
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.81 E-value=5.4e-09 Score=74.12 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=49.9
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC----ceeeeeecCcccc
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS----PVFGLILNPSVSM 95 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~----~~~~~~~~~~~~~ 95 (114)
.++|++|++||++||+++++|+|++|.|++. |+ ...||+.||+ +.+. ++.+.++++++++
T Consensus 1 i~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~ 74 (195)
T 3b02_A 1 MKRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQ 74 (195)
T ss_dssp CEEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEE
T ss_pred CeEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEE
Confidence 3689999999999999999999999999973 43 4559999999 8876 5567788887754
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.71 E-value=8.5e-09 Score=73.31 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=50.7
Q ss_pred HHhhcceeEecCCCEEEecCCCC--CeEEEEEeeeEEEe-----Cc-----ccCCCCcceeecccC----ceeeeeecCc
Q psy8804 29 LCRVVRYERHQANDVLYYTGELS--TSWYILLSGSVFID-----GS-----MFLPQSRNFVFNVFS----PVFGLILNPS 92 (114)
Q Consensus 29 La~~~~~~~~~~G~~If~qGd~~--~~~yiIlsG~VkI~-----g~-----~~~p~~~fg~~~~~~----~~~~~~~~~~ 92 (114)
|+..+..++|++|++||++||++ +++|+|++|.|++. |+ ...||+.||+ +.+. ++.+.+++++
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 35667889999999999999999 99999999999973 43 3559999998 6553 5567788887
Q ss_pred ccc
Q psy8804 93 VSM 95 (114)
Q Consensus 93 ~~~ 95 (114)
+++
T Consensus 80 ~v~ 82 (202)
T 2zcw_A 80 RLE 82 (202)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 53
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=73.33 E-value=6.6 Score=27.99 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=32.6
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeCcccCCCCc
Q psy8804 32 VVRYERHQANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQSR 74 (114)
Q Consensus 32 ~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g~~~~p~~~ 74 (114)
.+...++++|..+-...-++.-.++|++|+..-....+.||..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~de~~~~~~Gd~ 168 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFRDETDRFGAGDI 168 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEECSSSEEETTCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEECCcEEECCCeE
Confidence 3456788999999999999999999999998844334444443
No 54
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=65.79 E-value=20 Score=22.64 Aligned_cols=32 Identities=19% Similarity=-0.051 Sum_probs=25.7
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
....+++|..+-..-.+...++.+++|++.+.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~ 70 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIG 70 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEE
Confidence 34567888888777777889999999999964
No 55
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=62.50 E-value=8.5 Score=25.94 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=29.3
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 32 VVRYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 32 ~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
.....++++|..+-..--++...++||+|+....
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~ 78 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR 78 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEET
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc
Confidence 3566788999999888888889999999999975
No 56
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=60.78 E-value=17 Score=22.51 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=20.8
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 37 RHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 37 ~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
.+++|..+-....+...++.|++|++.+.
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~ 72 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVIT 72 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEE
Confidence 35666655445556788999999999864
No 57
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=59.01 E-value=16 Score=25.30 Aligned_cols=44 Identities=11% Similarity=-0.073 Sum_probs=33.5
Q ss_pred hhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeC--cccCCCCc
Q psy8804 31 RVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDG--SMFLPQSR 74 (114)
Q Consensus 31 ~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g--~~~~p~~~ 74 (114)
......++++|..+-...-++...++||+|+...++ ..+.||..
T Consensus 42 ~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~e~~~~~~~Gd~ 87 (159)
T 3ebr_A 42 ETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYKEHDWVAHAGSV 87 (159)
T ss_dssp EEEEEEEECSSCBCCCEEESSCEEEEEEESCEEETTSSCCBCTTCE
T ss_pred eEEEEEEECCCCCcccccCCCCEEEEEEEeEEEEeCCCeEECCCeE
Confidence 345667889999998888888999999999999643 24445544
No 58
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=57.68 E-value=32 Score=22.20 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=23.4
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
.+-++++|..+-..- +.+.+++|++|++.+.
T Consensus 43 ~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~ 73 (119)
T 3lwc_A 43 GYGRYAPGQSLTETM-AVDDVMIVLEGRLSVS 73 (119)
T ss_dssp EEEEECTTCEEEEEC-SSEEEEEEEEEEEEEE
T ss_pred EEEEECCCCCcCccC-CCCEEEEEEeCEEEEE
Confidence 345677887665553 7889999999999974
No 59
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=57.34 E-value=19 Score=25.64 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=31.9
Q ss_pred hCCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEE
Q psy8804 13 HGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILL 58 (114)
Q Consensus 13 r~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIl 58 (114)
-++|+|.+++-.+-+++... ..|++|+|.-..++++-+..
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~ 51 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVI 51 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEE
Confidence 36899999999998886665 24999999999988755543
No 60
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=53.16 E-value=36 Score=20.76 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=22.7
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|..+-..-.+...++++++|++.+.
T Consensus 44 ~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~ 74 (115)
T 1yhf_A 44 VFSLDKGQEIGRHSSPGDAMVTILSGLAEIT 74 (115)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEESEEEEE
T ss_pred EEEECCCCccCCEECCCcEEEEEEeCEEEEE
Confidence 3456777776555555778999999999863
No 61
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=51.93 E-value=41 Score=20.95 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=24.9
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...++++|..+=..-.+...+++|++|++.+.
T Consensus 44 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~ 75 (126)
T 4e2g_A 44 NWVRIEPNTEMPAHEHPHEQAGVMLEGTLELT 75 (126)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEECEEEE
T ss_pred EEEEECCCCcCCCccCCCceEEEEEEeEEEEE
Confidence 44567888877666666788999999999964
No 62
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=50.23 E-value=41 Score=20.53 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=23.1
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...++++|..+-..--+...++.|++|++.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~ 68 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVN 68 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEE
Confidence 44567788765444445778999999999863
No 63
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=48.06 E-value=27 Score=24.33 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=30.2
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeC
Q psy8804 32 VVRYERHQANDVLYYTGELSTSWYILLSGSVFIDG 66 (114)
Q Consensus 32 ~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g 66 (114)
.....++++|..+-...-++.-..+||+|+....+
T Consensus 44 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~~ 78 (165)
T 3cjx_A 44 MVMRASFAPGLTLPLHFHTGTVHMYTISGCWYYTE 78 (165)
T ss_dssp EEEEEEECTTCBCCEEEESSCEEEEEEESEEEETT
T ss_pred EEEEEEECCCCcCCcccCCCCEEEEEEEEEEEECC
Confidence 35677899999999998889999999999999843
No 64
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=47.70 E-value=37 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=27.9
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
..-++++|+.+=.+--+++.++.|++|++.+.
T Consensus 40 ~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~ 71 (227)
T 3rns_A 40 SLFSLAKDEEITAEAMLGNRYYYCFNGNGEIF 71 (227)
T ss_dssp EEEEECTTCEEEECSCSSCEEEEEEESEEEEE
T ss_pred EEEEECCCCccCccccCCCEEEEEEeCEEEEE
Confidence 45578999999998889999999999999864
No 65
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=47.61 E-value=33 Score=23.62 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=23.5
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
....+++|...-..-..++.++.|++|++.+.
T Consensus 44 ~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~ 75 (178)
T 1dgw_A 44 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILV 75 (178)
T ss_dssp EEEEECTTEEEEEEEESSEEEEEEEESEEEEE
T ss_pred EEEEecCCcEecCcCCCCCEEEEEEeEEEEEE
Confidence 34567888776555444689999999999863
No 66
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=47.04 E-value=48 Score=24.76 Aligned_cols=30 Identities=3% Similarity=-0.024 Sum_probs=21.8
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeeEEEeC
Q psy8804 37 RHQANDVLYYTGELSTSWYILLSGSVFIDG 66 (114)
Q Consensus 37 ~~~~G~~If~qGd~~~~~yiIlsG~VkI~g 66 (114)
++++|+.+-..=..+..+..+++|+|.|+|
T Consensus 188 ~L~~g~~~~~~~~~~~~~l~v~~G~v~v~g 217 (256)
T 2vec_A 188 VLDKGESANFQLHGPRAYLQSIHGKFHALT 217 (256)
T ss_dssp EECTTCEEEEECSSSEEEEEEEESCEEEEE
T ss_pred EECCCCEEEEecCCCeEEEEEEECEEEECC
Confidence 567887776665554555667899999986
No 67
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=46.78 E-value=35 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=30.7
Q ss_pred hhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeCcccCCCC
Q psy8804 31 RVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQS 73 (114)
Q Consensus 31 ~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g~~~~p~~ 73 (114)
....+.+.++|..+-.... +..=.+||+|++...+..+.+|.
T Consensus 146 E~v~l~r~~~G~~~~~~~h-gG~EilVL~G~~~d~~~~~~~Gs 187 (223)
T 3o14_A 146 ETVTHRKLEPGANLTSEAA-GGIEVLVLDGDVTVNDEVLGRNA 187 (223)
T ss_dssp CEEEEEEECTTCEEEECCS-SCEEEEEEEEEEEETTEEECTTE
T ss_pred cEEEEEEECCCCccCCCCC-CcEEEEEEEeEEEECCceECCCe
Confidence 3456788999999998887 44445999999997655444433
No 68
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=45.15 E-value=51 Score=20.48 Aligned_cols=32 Identities=6% Similarity=-0.036 Sum_probs=22.3
Q ss_pred ceeEecCCCEEEecCCCC-CeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELS-TSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~-~~~yiIlsG~VkI~ 65 (114)
....+++|..+-..-.+. ..+|.|++|++.+.
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~ 74 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYH 74 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEE
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEE
Confidence 345667887766555554 67888999999963
No 69
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=42.40 E-value=53 Score=19.58 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=22.8
Q ss_pred ceeEecCCCEEEec--CCC-CCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYT--GEL-STSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~q--Gd~-~~~~yiIlsG~VkI~ 65 (114)
....+++|..+-.. -.+ ...+++|++|++.+.
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~ 58 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAI 58 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEE
Confidence 34467888876544 334 678999999999863
No 70
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=40.99 E-value=23 Score=25.83 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=30.9
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeeEEEeCcccCCC
Q psy8804 33 VRYERHQANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQ 72 (114)
Q Consensus 33 ~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g~~~~p~ 72 (114)
..+.++++|..+-...-++.-..+||+|+....+..+.||
T Consensus 45 ~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~d~~~~~~~G 84 (223)
T 3o14_A 45 TSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQDEHGDYPAG 84 (223)
T ss_dssp EEEEEECTTEECCCEECTTCEEEEEEEEEEEETTEEEETT
T ss_pred EEEEEECCCCCcccccCCCCEEEEEEEeEEEECCeEECCC
Confidence 4567889999988888888999999999998644433333
No 71
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=39.97 E-value=55 Score=19.04 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=21.9
Q ss_pred ceeEecCCCEEEecCCCC-CeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELS-TSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~-~~~yiIlsG~VkI~ 65 (114)
...++++|..+-..-.+. ..++++++|++.+.
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~ 63 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVR 63 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEE
Confidence 344667887765444343 56899999999863
No 72
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=39.84 E-value=44 Score=19.02 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=15.3
Q ss_pred CCCCCCCCHHHHHHHHhhc
Q psy8804 15 LEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 15 v~lF~~L~~~~l~~La~~~ 33 (114)
+|-| .|++++++.|+...
T Consensus 61 Mp~~-~ls~~ei~~l~~yl 78 (82)
T 1cch_A 61 MPPN-PVTEEEAKILAEWV 78 (82)
T ss_dssp CCCC-SCCHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHH
Confidence 7778 99999999998764
No 73
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=39.11 E-value=78 Score=22.37 Aligned_cols=32 Identities=9% Similarity=-0.077 Sum_probs=25.5
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 34 RYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...++++|..+-..-.+++.++.+++|++.+.
T Consensus 156 ~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~ 187 (227)
T 3rns_A 156 TIMSFWKGESLDPHKAPGDALVTVLDGEGKYY 187 (227)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeEEEEEE
Confidence 34567888888776667888999999999964
No 74
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=38.23 E-value=72 Score=19.91 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=26.8
Q ss_pred CCHHHHHHHHhh-cceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 21 YRDSVLRSLCRV-VRYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 21 L~~~~l~~La~~-~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
.....+...-.. ...-++++|..-.. -+..-++.|++|++.+.
T Consensus 20 ~~~~~l~~~g~~~~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~ 63 (101)
T 1o5u_A 20 PTPEKLKELSVEKWPIWEKEVSEFDWY--YDTNETCYILEGKVEVT 63 (101)
T ss_dssp CCHHHHHHHTGGGSCEEEECSEEEEEE--CSSCEEEEEEEEEEEEE
T ss_pred CCccEEeeCCceEEEEEEeCCCccccc--CCceEEEEEEeCEEEEE
Confidence 344444443222 23456677776544 45678999999999974
No 75
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=37.65 E-value=25 Score=21.28 Aligned_cols=31 Identities=6% Similarity=0.032 Sum_probs=20.0
Q ss_pred eeEecCCCEEEecCCCCC-eEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELST-SWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~-~~yiIlsG~VkI~ 65 (114)
...+++|...-..--+.. .++.|++|++.+.
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~ 53 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLE 53 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEE
Confidence 345677765433333444 4888999999864
No 76
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=37.55 E-value=65 Score=20.32 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=21.1
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
..++++|...-..--+...+++|++|++.+.
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~ 82 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVL 82 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEE
Confidence 3455666555444445778899999999864
No 77
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=36.57 E-value=30 Score=22.30 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=17.4
Q ss_pred CCCCCCCCHHHHHHHHhhcce
Q psy8804 15 LEALAPYRDSVLRSLCRVVRY 35 (114)
Q Consensus 15 v~lF~~L~~~~l~~La~~~~~ 35 (114)
+|-|..|++++++.|+.....
T Consensus 101 MP~~~~Lsd~ei~alaaYl~~ 121 (137)
T 1mz4_A 101 FPKMRNLTEKDLVAIAGHILV 121 (137)
T ss_dssp SGGGTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 677888999999999887653
No 78
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=36.29 E-value=36 Score=25.22 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=25.8
Q ss_pred hhHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 3 DDLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 3 ed~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
..++.+.++-|++|.|..|+-+++-.|.+.+
T Consensus 87 ~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~ 117 (273)
T 3vi8_A 87 ETVTELTEFAKAIPGFANLDLNDQVTLLKYG 117 (273)
T ss_dssp HHHHHHHHHGGGSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCcccCCHHHHHHHHHHH
Confidence 3567788999999999999999988776654
No 79
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=35.17 E-value=1.2e+02 Score=22.15 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=24.0
Q ss_pred eEecCCCEEEecCCCCCeEE-EEEeeeEEEeCcccC
Q psy8804 36 ERHQANDVLYYTGELSTSWY-ILLSGSVFIDGSMFL 70 (114)
Q Consensus 36 ~~~~~G~~If~qGd~~~~~y-iIlsG~VkI~g~~~~ 70 (114)
.++++|+.+-..=.++...| .+++|+|.|+|..+.
T Consensus 165 ~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v~g~~l~ 200 (242)
T 1tq5_A 165 WALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKAS 200 (242)
T ss_dssp EEECTTCEEEECCCTTCEEEEEEEESEEEETTEEEE
T ss_pred EEECCCCEEEeecCCCcEEEEEEccCcEEECCEEeC
Confidence 35678887766666665544 467999999875433
No 80
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=34.11 E-value=34 Score=20.35 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=18.3
Q ss_pred hhCCCCCCC---CCHHHHHHHHhhcc
Q psy8804 12 LHGLEALAP---YRDSVLRSLCRVVR 34 (114)
Q Consensus 12 Lr~v~lF~~---L~~~~l~~La~~~~ 34 (114)
.+.+|-|.. |++++++.|+....
T Consensus 56 ~~~MP~~~~~~~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 56 LNAMPPKGTCADCSDDELKAAIGKMS 81 (83)
T ss_dssp BTTBCSSSSCSSCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 346999975 99999999987643
No 81
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=33.39 E-value=72 Score=21.59 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=21.8
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|..+-..--+...+++|++|++.+.
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~ 90 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVV 90 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEE
Confidence 3456676655444446788999999999863
No 82
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=32.66 E-value=70 Score=19.82 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=20.7
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|...-..--....++++++|+..+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~ 68 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIR 68 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEE
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEE
Confidence 3455666644444445678899999998853
No 83
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=32.42 E-value=97 Score=20.86 Aligned_cols=29 Identities=7% Similarity=-0.093 Sum_probs=18.7
Q ss_pred EecCCCEEE--ecCCCCCeEEEEEeeeEEEe
Q psy8804 37 RHQANDVLY--YTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 37 ~~~~G~~If--~qGd~~~~~yiIlsG~VkI~ 65 (114)
.+++|...- ..-.....++.|++|++.+.
T Consensus 110 ~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~ 140 (192)
T 1y9q_A 110 TLLDHHQQMSSPHALGVIEYIHVLEGIMKVF 140 (192)
T ss_dssp EECTTCEEEECCCSTTCEEEEEEEESCEEEE
T ss_pred EECCCCCccCCCCCCCCEEEEEEEEeEEEEE
Confidence 445665544 22234568899999999864
No 84
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=31.36 E-value=57 Score=18.82 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=21.6
Q ss_pred HHHHHHHhh----CCCCCC--CCCHHHHHHHHhhcc
Q psy8804 5 LQIIYYGLH----GLEALA--PYRDSVLRSLCRVVR 34 (114)
Q Consensus 5 ~e~i~~~Lr----~v~lF~--~L~~~~l~~La~~~~ 34 (114)
.+.+...++ .+|-|. .|++++++.|+....
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~~ls~~ei~~l~~yi~ 81 (85)
T 3cu4_A 46 VRDVAAYIRNPGPGMPAFGEAMIPPADALKIGEYVV 81 (85)
T ss_dssp HHHHHHHTTSCCTTSCCCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 344555555 388898 599999999987643
No 85
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=31.32 E-value=58 Score=18.63 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=15.3
Q ss_pred CCCCCCCCHHHHHHHHhhc
Q psy8804 15 LEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 15 v~lF~~L~~~~l~~La~~~ 33 (114)
+|-| .|++++++.|+...
T Consensus 59 Mp~~-~Lsd~ei~~l~~yl 76 (80)
T 1ayg_A 59 MPPQ-NVTDAEAKQLAQWI 76 (80)
T ss_dssp BCCC-CCCHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHH
Confidence 7778 89999999998764
No 86
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}
Probab=31.14 E-value=87 Score=23.41 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=39.9
Q ss_pred CeEEEEEeeeEEEeCc---ccCCC-CcceeecccCceeeeeecCccccceeeeeeecCCc
Q psy8804 52 TSWYILLSGSVFIDGS---MFLPQ-SRNFVFNVFSPVFGLILNPSVSMAAKVSTLWDPGS 107 (114)
Q Consensus 52 ~~~yiIlsG~VkI~g~---~~~p~-~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (114)
+...+.+=|+-.|.|. +..+. ......+..+|.+++++++.+++-.++-|.=.+++
T Consensus 171 d~v~v~lv~R~Ni~GGet~I~~~~~~~~~~~~l~~p~d~llv~D~~~~H~vTpI~~~~~~ 230 (254)
T 3pl0_A 171 DFVAVVFIGRQGVRGGETRVFDAAGPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPA 230 (254)
T ss_dssp SEEEEEEEEEESEEECCEEEEETTSSEEEEECCCSTTCEEEEETTTEEEEECCEEESCTT
T ss_pred CEEEEEEecCCccccceEEEEcCCCCccceeEecCCCcEEEEeCCcccCCCCccccCCCC
Confidence 5566677777777652 22232 33345567789999999999999999888877665
No 87
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=31.00 E-value=54 Score=20.01 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=21.8
Q ss_pred HHHHHHhh----CCCCCC--CCCHHHHHHHHhhcc
Q psy8804 6 QIIYYGLH----GLEALA--PYRDSVLRSLCRVVR 34 (114)
Q Consensus 6 e~i~~~Lr----~v~lF~--~L~~~~l~~La~~~~ 34 (114)
+.+...++ .+|-|. .|++++++.|+....
T Consensus 61 ~~l~~~i~~G~~~MP~~~~~~Lsd~ei~~l~~Yi~ 95 (99)
T 3dp5_A 61 RDVAAYIRNPGPGMPAFGEAMIPPADALKIGEYVV 95 (99)
T ss_dssp HHHHHHTTSCCTTSCCCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 44555555 589998 499999999987643
No 88
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=30.96 E-value=1e+02 Score=19.57 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=21.0
Q ss_pred eeEecCCCEEEecCCC-CCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGEL-STSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~-~~~~yiIlsG~VkI~ 65 (114)
...+++|..+-..--+ ...++.|++|++.+.
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~ 92 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFH 92 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEE
Confidence 4467777765433333 367899999999864
No 89
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=29.82 E-value=32 Score=19.72 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHhhcc
Q psy8804 15 LEALAPYRDSVLRSLCRVVR 34 (114)
Q Consensus 15 v~lF~~L~~~~l~~La~~~~ 34 (114)
+|-|..|++++++.|+....
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~ 76 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVL 76 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 67788999999999987643
No 90
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=29.65 E-value=40 Score=19.42 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=16.0
Q ss_pred CCCCCCCCHHHHHHHHhhc
Q psy8804 15 LEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 15 v~lF~~L~~~~l~~La~~~ 33 (114)
+|-|..|++++++.|+...
T Consensus 59 Mp~~~~Ls~~ei~~l~~yl 77 (81)
T 1a56_A 59 MPPNVNVSDADAKALADWI 77 (81)
T ss_dssp BCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6778889999999998764
No 91
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=28.83 E-value=1.1e+02 Score=20.49 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEee
Q psy8804 19 APYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSG 60 (114)
Q Consensus 19 ~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG 60 (114)
++|+.+++....-.-......+|++-++-||.+ +.-++-+|
T Consensus 78 sgl~~~~l~~~LP~eltlWvDPgeVs~R~GE~g-~i~vly~~ 118 (120)
T 3e9v_A 78 IGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDG-SICVLYEE 118 (120)
T ss_dssp TTCCHHHHHHHSCTTEEEEEETTEEEEEESTTS-CEEEEEEC
T ss_pred hCCCHHHHHHhCCcccEEEECCCEEEEEecCCC-eEEEEecC
Confidence 577888877655555556789999999999976 44454443
No 92
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=28.80 E-value=40 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=24.6
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.++.|.++-|++|.|..|+-+++-.|.+.+
T Consensus 64 ~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~ 93 (257)
T 3v3e_B 64 SLEVIRKWAEKIPGFAELSPADQDLLLESA 93 (257)
T ss_dssp THHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCCHHHHHHHHHHH
Confidence 356788999999999999999987765543
No 93
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=28.23 E-value=39 Score=23.42 Aligned_cols=30 Identities=3% Similarity=-0.073 Sum_probs=24.4
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.++...|.+.+
T Consensus 32 ~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~ 61 (199)
T 3cqv_A 32 AVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 61 (199)
T ss_dssp HHHHHHHHHHTSGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhCCHHHHHHHHHHh
Confidence 345678999999999999999988766554
No 94
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=27.92 E-value=68 Score=21.63 Aligned_cols=30 Identities=3% Similarity=-0.192 Sum_probs=20.3
Q ss_pred eEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 36 ERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 36 ~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
..+++|..+-..-.+...+++|++|++.+.
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~ 78 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCL 78 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEE
Confidence 345666555444445677889999999864
No 95
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=27.74 E-value=70 Score=21.62 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=18.1
Q ss_pred EecCCCEEE---ecCCCCCeEEEEEeeeEEEe
Q psy8804 37 RHQANDVLY---YTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 37 ~~~~G~~If---~qGd~~~~~yiIlsG~VkI~ 65 (114)
.+++|...- ..-.++..++.|++|++.+.
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~ 154 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMK 154 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEE
Confidence 455655432 22334567888899999864
No 96
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=27.60 E-value=54 Score=23.24 Aligned_cols=30 Identities=10% Similarity=-0.117 Sum_probs=24.2
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 49 ~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~ 78 (235)
T 2nxx_A 49 QLFQLVQWAKLVPHFTSLPLTDQVQLLRAG 78 (235)
T ss_dssp HHHHHHHHHHHSTTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCCHHHHHHHHHHh
Confidence 345578999999999999999888765554
No 97
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=27.51 E-value=55 Score=18.62 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHhh----CCCCCC-CCCHHHHHHHHhhcc
Q psy8804 6 QIIYYGLH----GLEALA-PYRDSVLRSLCRVVR 34 (114)
Q Consensus 6 e~i~~~Lr----~v~lF~-~L~~~~l~~La~~~~ 34 (114)
+.+...++ .+|-|. .|++++++.|+....
T Consensus 45 ~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~ 78 (85)
T 1gdv_A 45 DAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVL 78 (85)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34445554 478887 799999999987643
No 98
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=27.50 E-value=65 Score=23.09 Aligned_cols=30 Identities=7% Similarity=-0.192 Sum_probs=23.8
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.++...|.+.+
T Consensus 58 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 87 (243)
T 2iz2_A 58 NLFSQVDWARNTVFFKDLKVDDQMKLLQHS 87 (243)
T ss_dssp HHHHHHHHHHTCTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhHhhCChHHHHHHHHHH
Confidence 345678999999999999998887765543
No 99
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=27.45 E-value=56 Score=21.57 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=17.5
Q ss_pred ecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 38 HQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 38 ~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
..+|..-... +..+-++.||+|++.+.
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt 75 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYS 75 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEE
Confidence 3445444433 33357899999999984
No 100
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=27.19 E-value=70 Score=21.83 Aligned_cols=29 Identities=7% Similarity=-0.071 Sum_probs=19.5
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 37 RHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 37 ~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
.+++|..+-..--+...++.|++|++.+.
T Consensus 59 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~ 87 (166)
T 3jzv_A 59 EVGPGGHSTLERHQHAHGVMILKGRGHAM 87 (166)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEECEEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEE
Confidence 45666555444445667888999999863
No 101
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=26.67 E-value=40 Score=24.47 Aligned_cols=30 Identities=3% Similarity=-0.071 Sum_probs=24.7
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.+++|.|..|+.++...|.+.+
T Consensus 77 ~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~ 106 (245)
T 3n00_A 77 AVREVVEFAKHIPGFRDLSQHDQVTLLKAG 106 (245)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCCHHHHHHHHHHH
Confidence 456678999999999999999988875544
No 102
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=26.21 E-value=1.3e+02 Score=23.24 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=33.9
Q ss_pred EEEecCCCCCeEEEEEeeeEEE---e-C---cccC-CCCcce-------eecccCceeeeeecCcccccee
Q psy8804 43 VLYYTGELSTSWYILLSGSVFI---D-G---SMFL-PQSRNF-------VFNVFSPVFGLILNPSVSMAAK 98 (114)
Q Consensus 43 ~If~qGd~~~~~yiIlsG~VkI---~-g---~~~~-p~~~fg-------~~~~~~~~~~~~~~~~~~~~~~ 98 (114)
..++ -++.+.||.+++|...+ + | ++.+ +|+.|- .=.-++.+.++++++.+.-...
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~et~gLviE~~R~~~~~ 113 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETEL 113 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEECCCTTCC
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccCCeEEEEEeecCCCCCc
Confidence 6667 67889999999999885 2 4 2222 333332 1112446677888887764443
No 103
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=26.17 E-value=51 Score=23.28 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=23.9
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.++.-.|.+.+
T Consensus 54 ~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~ 83 (232)
T 1osh_A 54 HVQVLVEFTKKLPGFQTLDHEDQIALLKGS 83 (232)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhhCCHHHHHHHHHHh
Confidence 355678999999999999999887765543
No 104
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=26.09 E-value=25 Score=23.73 Aligned_cols=62 Identities=10% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHhhcceeEecCCC-EEEecCCCCCeEEEEEeeeEEEeCcccCCCCcceeecccCcee
Q psy8804 20 PYRDSVLRSLCRVVRYERHQAND-VLYYTGELSTSWYILLSGSVFIDGSMFLPQSRNFVFNVFSPVF 85 (114)
Q Consensus 20 ~L~~~~l~~La~~~~~~~~~~G~-~If~qGd~~~~~yiIlsG~VkI~g~~~~p~~~fg~~~~~~~~~ 85 (114)
+-++.+.+.++......--++|. .+-.+|.....|.++--|.|-|+ ++.|..+ +..-|+.++
T Consensus 42 g~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLlD~GdVvVH--if~~e~R--efY~LE~LW 104 (125)
T 2o5a_A 42 GNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLIDLGDVVVH--VFHKDER--AYYNLEKLW 104 (125)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCCCCEEESTTTTSEEEEECSSEEEE--EEETTCG--GGTSTTTCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCccccccCCCCCCEEEEeCCCEEEE--eCCHHHH--hHcCHHHHh
Confidence 55677777776654443223443 34569999999999999999997 8888777 555566554
No 105
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=25.49 E-value=1.1e+02 Score=18.98 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=18.6
Q ss_pred eeEecCCCEEE--ecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLY--YTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If--~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|..+- ..-+...-+|+|++|++.+.
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~ 62 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFIT 62 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEE
Confidence 34567776542 22233345677999999853
No 106
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.33 E-value=1.5e+02 Score=22.32 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=20.7
Q ss_pred eEecCCCEEEecCCCC-CeEEEEEeeeEEEe
Q psy8804 36 ERHQANDVLYYTGELS-TSWYILLSGSVFID 65 (114)
Q Consensus 36 ~~~~~G~~If~qGd~~-~~~yiIlsG~VkI~ 65 (114)
..+++|...-..-.++ +.++.|++|++.+.
T Consensus 262 ~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~ 292 (385)
T 1j58_A 262 VTVEPGAMRELHWHPNTHEWQYYISGKARMT 292 (385)
T ss_dssp EEECTTCEEEEEECSSSCEEEEEEESEEEEE
T ss_pred EEECCCcccCceeCCCCCEEEEEEeCeEEEE
Confidence 3556666654444455 78999999999853
No 107
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=25.27 E-value=53 Score=23.62 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=23.5
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.++.-.|.+.+
T Consensus 64 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 93 (248)
T 2nxx_E 64 TVQLIVEFAKRLPGFDKLLREDQIALLKAC 93 (248)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhCCHHHHHHHHHHh
Confidence 345678999999999999998877754443
No 108
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=25.14 E-value=79 Score=21.18 Aligned_cols=31 Identities=6% Similarity=0.031 Sum_probs=20.4
Q ss_pred eeEecCCCEE--EecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVL--YYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~I--f~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|... .+.-+..+.++.|++|++.+.
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~ 79 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLV 79 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEE
Confidence 4566777644 233333468999999999863
No 109
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=24.96 E-value=2.1e+02 Score=21.21 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=21.9
Q ss_pred ceeEecCCCEEEecCCCC-CeEEEEEeeeEEE
Q psy8804 34 RYERHQANDVLYYTGELS-TSWYILLSGSVFI 64 (114)
Q Consensus 34 ~~~~~~~G~~If~qGd~~-~~~yiIlsG~VkI 64 (114)
....+++|..+-..-.+. +.++.|++|++.+
T Consensus 237 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~ 268 (361)
T 2vqa_A 237 ALIHLEPGAMRQLHWHPNADEWQYVLDGEMDL 268 (361)
T ss_dssp EEEEECTTCEEEEEECSSCCEEEEEEESCEEE
T ss_pred EEEEECCCcccccccCCCCCEEEEEEeCEEEE
Confidence 345667777665443444 8899999999985
No 110
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=24.92 E-value=71 Score=23.79 Aligned_cols=29 Identities=10% Similarity=-0.101 Sum_probs=23.3
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhh
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRV 32 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~ 32 (114)
.+..+.++.|++|.|..|+.++...|.+.
T Consensus 83 ~l~~~VewaK~iP~F~~L~~~DQi~LLk~ 111 (303)
T 1xdk_B 83 CIIKIVEFAKRLPGFTGLTIADQITLLKA 111 (303)
T ss_dssp HHHHHHHHHHTSTTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccCCHHHHHHHHHh
Confidence 34557899999999999999888776544
No 111
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=24.91 E-value=54 Score=23.48 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=23.9
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 48 ~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~ 77 (243)
T 3ltx_A 48 ELVHLINWAKNVPGYTDLSLSDQVHLIECC 77 (243)
T ss_dssp HHHHHHHHHTTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhcCCHHHHHHHHHHH
Confidence 345567999999999999999988765543
No 112
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=24.68 E-value=55 Score=23.57 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=24.4
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 60 ~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~ 89 (248)
T 3k6p_A 60 EIVVTISWAKSIPGFSSLSLSDQMSVLQSV 89 (248)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccCCHHHHHHHHHHH
Confidence 455678999999999999999988765544
No 113
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=24.55 E-value=56 Score=23.63 Aligned_cols=29 Identities=7% Similarity=-0.071 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
+..+.++.|++|.|..|+.+++-.|.+.+
T Consensus 60 l~~~VewAK~lP~F~~L~~~DQi~LLk~~ 88 (244)
T 1pdu_A 60 VDVIKQFAEKIPGYFDLLPEDQELLFQSA 88 (244)
T ss_dssp HHHHHHHHTTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCCHHHHHHHHHHH
Confidence 45567899999999999998887765543
No 114
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=24.44 E-value=64 Score=23.65 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=23.1
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhh
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRV 32 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~ 32 (114)
.+..+.++.|++|.|..|+.+++-.|.+.
T Consensus 77 ~l~~~VewaK~lP~F~~L~~~DQi~LLk~ 105 (270)
T 1n83_A 77 AIQYVVEFAKRIDGFMELCQNDQIVLLKA 105 (270)
T ss_dssp HHHHHHHHHHHSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhcCHHHHHHHHHH
Confidence 34556799999999999999887775444
No 115
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=24.30 E-value=1.4e+02 Score=24.37 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=33.4
Q ss_pred HHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeeEEEeCcccCCCC
Q psy8804 24 SVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQS 73 (114)
Q Consensus 24 ~~l~~La~~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g~~~~p~~ 73 (114)
..|+.+--.+....+++|..+.-.=-....++.|+.|+..+. ++.||+
T Consensus 38 ~~l~~~gv~~~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg--~v~pgc 85 (493)
T 2d5f_A 38 PELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIG--FAFPGC 85 (493)
T ss_dssp HHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEE--ECCTTC
T ss_pred hhhccCCEEEEEEEeCCCcEeCceecCCCeEEEEEeCEEEEE--EEeCCC
Confidence 456665444556677888877444445678999999999986 666764
No 116
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=24.29 E-value=85 Score=17.77 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.0
Q ss_pred CCCCC-CCCCHHHHHHHHhhcc
Q psy8804 14 GLEAL-APYRDSVLRSLCRVVR 34 (114)
Q Consensus 14 ~v~lF-~~L~~~~l~~La~~~~ 34 (114)
.+|-| ..|++++++.|+....
T Consensus 58 ~Mp~~~~~ls~~ei~~l~~yl~ 79 (86)
T 3ph2_B 58 GMPAFKGRLTDDQIAAVAAYVL 79 (86)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHH
T ss_pred CCCCcccCCCHHHHHHHHHHHH
Confidence 57888 5799999999987643
No 117
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=24.28 E-value=48 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.021 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhh
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRV 32 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~ 32 (114)
++.+.++-|++|.|..|+.+++-.|.+.
T Consensus 54 l~~iVefAK~iPgF~~L~~~DQi~LLK~ 81 (244)
T 3gyt_A 54 MRRLVKMAKRLGAFNEISEAGKFSLLKG 81 (244)
T ss_dssp HHHHHHHHHTCGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcccCCHHHHHHHHHH
Confidence 5667899999999999999988776543
No 118
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=24.26 E-value=57 Score=23.39 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=23.9
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 60 ~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~ 89 (244)
T 2e2r_A 60 ELVVIIGWAKHIPGFSTLSLADQMSLLQSA 89 (244)
T ss_dssp HHHHHHHHHTTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCCHHHHHHHHHHh
Confidence 345567999999999999999887765543
No 119
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=24.18 E-value=57 Score=24.04 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhh
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRV 32 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~ 32 (114)
+..+.++.|++|.|..|+.+++-.|.+.
T Consensus 86 v~~~VewAK~iP~F~~L~~~DQi~LLk~ 113 (269)
T 3u9q_A 86 VQEITEYAKSIPGFVNLDLNDQVTLLKY 113 (269)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChhhcCHHHHHHHHHH
Confidence 4557799999999999999988776554
No 120
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=24.17 E-value=58 Score=23.13 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=22.5
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhh
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRV 32 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~ 32 (114)
+..+.++.|++|.|..|+.+++-.|.+.
T Consensus 57 l~~~VewaK~lp~F~~L~~~DQ~~LLk~ 84 (236)
T 1fcy_A 57 IIKIVEFAKRLPGFTGLSIADQITLLKA 84 (236)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccCCHHHHHHHHHH
Confidence 4456799999999999999888775444
No 121
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=23.96 E-value=57 Score=23.88 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=23.6
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhh
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRV 32 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~ 32 (114)
.+..+.++.|++|.|..|+.+++..|.+.
T Consensus 80 ~l~~~VewaK~lP~F~~L~~~DQi~LLk~ 108 (266)
T 3kmr_A 80 CIIKTVEFAKQLPGFTTLTIADQITLLKA 108 (266)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcChhhCCHHHHHHHHHH
Confidence 34557789999999999999988876554
No 122
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=23.95 E-value=1.2e+02 Score=22.37 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=22.6
Q ss_pred cCCCEEEecCCCCCeEEEEEeeeEE--Ee-Cc--ccCCCCcc
Q psy8804 39 QANDVLYYTGELSTSWYILLSGSVF--ID-GS--MFLPQSRN 75 (114)
Q Consensus 39 ~~G~~If~qGd~~~~~yiIlsG~Vk--I~-g~--~~~p~~~f 75 (114)
++|...=..-.+.+.+|+|++|.+. +. |+ ...||+.+
T Consensus 140 ~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v 181 (217)
T 4b29_A 140 GPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTR 181 (217)
T ss_dssp CSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEE
T ss_pred CCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEE
Confidence 3444433334578999999999965 45 32 34455553
No 123
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=23.85 E-value=77 Score=20.80 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=20.2
Q ss_pred eeEecCCCE-E-EecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDV-L-YYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~-I-f~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|.. . .+.-.....++.|++|++.+.
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~ 82 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLT 82 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEE
Confidence 345677763 2 222235678999999999863
No 124
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=23.58 E-value=62 Score=22.87 Aligned_cols=30 Identities=10% Similarity=-0.103 Sum_probs=23.8
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.+++|.|+.|+.++...|.+.+
T Consensus 53 ~l~~~vewak~ip~F~~L~~~DQ~~LLk~~ 82 (240)
T 2p1t_A 53 QLFTLVEWAKRIPHFSELPLDDQVILLRAG 82 (240)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcChhcCCHHHHHHHHHHH
Confidence 344567899999999999998887765544
No 125
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=23.57 E-value=1.3e+02 Score=19.61 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=21.5
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|..+-..--+...+++|++|++.+.
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~ 82 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQ 82 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEE
Confidence 4456777766444444578999999999853
No 126
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=23.53 E-value=89 Score=17.83 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHHhh----CCCCCC-CCCHHHHHHHHhhcc
Q psy8804 6 QIIYYGLH----GLEALA-PYRDSVLRSLCRVVR 34 (114)
Q Consensus 6 e~i~~~Lr----~v~lF~-~L~~~~l~~La~~~~ 34 (114)
+.+...++ .+|-|. .|++++++.|+....
T Consensus 47 ~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~ 80 (88)
T 3dmi_A 47 KSIISQVTGGKNAMPAFGGRLSDEEIANVAAYVL 80 (88)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCCcCCCCCHHHHHHHHHHHH
Confidence 33444444 588887 599999999987654
No 127
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=23.49 E-value=2e+02 Score=20.45 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=20.9
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
...+++|...-..- ++.++.|++|++.+.
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~ 82 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVA 82 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEE
Confidence 34667776654442 778899999999964
No 128
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=23.37 E-value=86 Score=20.38 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=16.7
Q ss_pred ecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 38 HQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 38 ~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
..+|..-.+.. +.+.++.|++|++.+.
T Consensus 56 ~~pG~~~~~~~-~~~E~~~Vl~G~~~l~ 82 (123)
T 3bcw_A 56 STSGSFQSNTT-GYIEYCHIIEGEARLV 82 (123)
T ss_dssp EEEEEEECCCT-TEEEEEEEEEEEEEEE
T ss_pred ECCCceeeEcC-CCcEEEEEEEEEEEEE
Confidence 34454443322 2378888999998864
No 129
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=23.36 E-value=1e+02 Score=23.81 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=21.1
Q ss_pred ecCCCEEEecCCCCCeEEEEEeeeEEE
Q psy8804 38 HQANDVLYYTGELSTSWYILLSGSVFI 64 (114)
Q Consensus 38 ~~~G~~If~qGd~~~~~yiIlsG~VkI 64 (114)
|.+|+.+..+... +-|+-+++|+..|
T Consensus 214 ~G~Ges~~~~~~~-d~wiWqLEGss~V 239 (286)
T 2qnk_A 214 YGQGSSEGLRQNV-DVWLWQLEGSSVV 239 (286)
T ss_dssp ECSEEEEECCCSS-CEEEEEEESCEEE
T ss_pred EcCCccccccCcC-cEEEEEEcCceEE
Confidence 6777777777777 9999999999655
No 130
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=23.24 E-value=62 Score=22.99 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=24.0
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 45 ~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~ 74 (240)
T 3oll_A 45 ELVHMISWAKKIPGFVELSLFDQVRLLESC 74 (240)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcccCCHHHHHHHHHHH
Confidence 345567899999999999999988765543
No 131
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=23.09 E-value=66 Score=18.51 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=16.6
Q ss_pred CCCCCC-CCCHHHHHHHHhhc
Q psy8804 14 GLEALA-PYRDSVLRSLCRVV 33 (114)
Q Consensus 14 ~v~lF~-~L~~~~l~~La~~~ 33 (114)
.+|-|. .|++++++.|+...
T Consensus 54 ~Mp~~~~~Lsd~ei~~l~~yi 74 (78)
T 1gks_A 54 AMPAYDGRADREDLVKAIEYM 74 (78)
T ss_dssp TBCCCBTTBCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH
Confidence 488895 79999999998764
No 132
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=23.07 E-value=62 Score=23.72 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=24.1
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 71 ~l~~~VewAK~lP~F~~L~~~DQi~LLk~~ 100 (271)
T 1l2j_A 71 ELVHMISWAKKIPGFVELSLFDQVRLLESC 100 (271)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccccCCHHHHHHHHHHH
Confidence 345578999999999999999887765554
No 133
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=22.90 E-value=62 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=24.9
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhcc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVVR 34 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~~ 34 (114)
.+..+.++.|++|.|..|+.+++..|.+.+.
T Consensus 46 ~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w 76 (249)
T 3p0u_A 46 LLFLSMHWARSIPAFQALGQDCNTSLVRACW 76 (249)
T ss_dssp HHHHHHHHHHTCTTTGGGCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHcCcchhcCCHHHHHHHHHHHH
Confidence 3455689999999999999999888766544
No 134
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=22.87 E-value=80 Score=24.87 Aligned_cols=29 Identities=10% Similarity=-0.073 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
+..+.++.|++|.|..|+.+++-.|.+.+
T Consensus 235 l~~~VewAK~iP~F~~L~~~DQi~LLk~~ 263 (419)
T 3dzy_D 235 VQEITEYAKSIPGFVNLDLNDQVTLLKYG 263 (419)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHH
Confidence 44567999999999999999887765543
No 135
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=22.83 E-value=1.1e+02 Score=22.15 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=30.1
Q ss_pred CCCCCCCCCHHHHHHHHhhcceeEecCCCEEEecCCCC-CeEEE
Q psy8804 14 GLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELS-TSWYI 56 (114)
Q Consensus 14 ~v~lF~~L~~~~l~~La~~~~~~~~~~G~~If~qGd~~-~~~yi 56 (114)
.+|.|.+++-.+-++..+. -+.|++|+|....| +.+-+
T Consensus 7 ~HP~F~n~~~~qAe~~L~~-----~~~Ge~iIRPSSkg~dhLtv 45 (197)
T 3or8_A 7 NHPYYFPFNGKQAEDYLRS-----KERGDFVIRQSSRGDDHLAI 45 (197)
T ss_dssp CCTTEECCCHHHHHHHHTT-----SCTTCEEEEECSSCTTEEEE
T ss_pred CCCCcCCCCHHHHHHHHhc-----CCCCCEEEeeCCCCCCcEEE
Confidence 6899999999998886654 36899999999986 44433
No 136
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=22.77 E-value=73 Score=18.53 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=17.2
Q ss_pred CCCCCC-CCCHHHHHHHHhhcc
Q psy8804 14 GLEALA-PYRDSVLRSLCRVVR 34 (114)
Q Consensus 14 ~v~lF~-~L~~~~l~~La~~~~ 34 (114)
.+|-|. .|++++++.|+....
T Consensus 62 ~Mp~~~~~ls~~ei~~l~~yl~ 83 (91)
T 1ls9_A 62 AMPAWADRLDEDDIEAVSNYVY 83 (91)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHH
T ss_pred CCcchhhhCCHHHHHHHHHHHH
Confidence 488886 799999999987654
No 137
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=22.73 E-value=85 Score=23.47 Aligned_cols=28 Identities=7% Similarity=-0.068 Sum_probs=22.5
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhh
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRV 32 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~ 32 (114)
+..+.++.|++|.|..|+.+++-.|.+.
T Consensus 115 l~~~VewAK~iP~F~~L~~~DQi~LLk~ 142 (302)
T 2hc4_A 115 IQKVIGFAKMIPGFRDLTAEDQIALLKS 142 (302)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 4557799999999999999887765443
No 138
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=22.66 E-value=86 Score=23.45 Aligned_cols=30 Identities=7% Similarity=-0.122 Sum_probs=24.1
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 86 ~l~~~VewAK~lP~F~~L~~~DQi~LLk~~ 115 (294)
T 3vhu_A 86 QMIQVVKWAKVLPGFKNLPLEDQITLIQYS 115 (294)
T ss_dssp HHHHHHHHHHTCTTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhCCHHHHHHHHHHh
Confidence 455578999999999999999888765543
No 139
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=22.53 E-value=64 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=23.9
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.+++|.|..|+.++...|.+.+
T Consensus 86 ~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~ 115 (271)
T 1ovl_A 86 SMEIIRGWAEKIPGFADLPKADQDLLFESA 115 (271)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCChHHHHHHHHHh
Confidence 345567999999999999999887765544
No 140
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=22.41 E-value=55 Score=23.33 Aligned_cols=30 Identities=10% Similarity=-0.084 Sum_probs=24.0
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 49 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 78 (244)
T 3cjw_A 49 MLFSAVEWARNIPFFPDLQITDQVALLRLT 78 (244)
T ss_dssp HHHHHHHHHHHSSSGGGSCHHHHHHHHHHH
T ss_pred HHHHHHhHHHhCCChhcCCHHHHHHHHHHH
Confidence 345578999999999999999887765544
No 141
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=22.34 E-value=54 Score=23.65 Aligned_cols=30 Identities=10% Similarity=-0.040 Sum_probs=23.9
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++-.|.+.+
T Consensus 68 ~l~~~VewaK~iP~F~~L~~~DQi~LLk~~ 97 (248)
T 3l0l_A 68 AIQYVVEFAKRLSGFMELCQNDQIVLLKAG 97 (248)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCHHHHHHHHHHh
Confidence 345578999999999999999988765543
No 142
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=21.91 E-value=66 Score=23.51 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=23.8
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 43 ~l~~~VewAK~lp~F~~L~~~DQi~LLk~~ 72 (268)
T 1yye_A 43 ELVHMISWAKKIPGFVELSLFDQVRLLESC 72 (268)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhcCCHHHHHHHHHHH
Confidence 345578999999999999999887765543
No 143
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=21.46 E-value=69 Score=23.30 Aligned_cols=30 Identities=7% Similarity=-0.122 Sum_probs=24.0
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 52 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 81 (260)
T 3vhv_A 52 QMIQVVKWAKVLPGFKNLPLEDQITLIQYS 81 (260)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHhcCCHHHHHHHHHHh
Confidence 445578999999999999999888765543
No 144
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.39 E-value=1.4e+02 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=26.3
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 32 VVRYERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 32 ~~~~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
.+...++++|..+-..--.++.|+.|++|+..+.
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~ 95 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLT 95 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEE
Confidence 3445677888887777556789999999999874
No 145
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=21.22 E-value=61 Score=23.20 Aligned_cols=30 Identities=7% Similarity=-0.076 Sum_probs=23.6
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 47 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 76 (248)
T 1xpc_A 47 ELVHMINWAKRVPGFVDLTLHDQVHLLECA 76 (248)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccCCHHHHHHHHHHH
Confidence 344567999999999999998887765543
No 146
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=21.22 E-value=98 Score=18.89 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=33.1
Q ss_pred eEecCCCEEEecCCCCCeEEEEEeeeEEEeCcccCCCCcce
Q psy8804 36 ERHQANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQSRNF 76 (114)
Q Consensus 36 ~~~~~G~~If~qGd~~~~~yiIlsG~VkI~g~~~~p~~~fg 76 (114)
.++++|++|=-+...++..-+.+.|...-.|....-++.+|
T Consensus 34 l~L~~GdVi~Ld~~~~e~v~i~vng~~~~~ge~g~~~~~~a 74 (84)
T 1o9y_A 34 RRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEGRLG 74 (84)
T ss_dssp HTCCTTCEEEECSSCTTEEEEEETTEEEEEEEEEEETTEEE
T ss_pred hcCCCCCEEEeCCCCCCCEEEEECCEEEEEEEEEEECCEEE
Confidence 45689999999988888999999999988777666666655
No 147
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=21.19 E-value=54 Score=22.95 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=18.2
Q ss_pred CCCCeEEEEEeeeEEEe--Cc--ccCCCCcc
Q psy8804 49 ELSTSWYILLSGSVFID--GS--MFLPQSRN 75 (114)
Q Consensus 49 d~~~~~yiIlsG~VkI~--g~--~~~p~~~f 75 (114)
..++.++.|++|+|.+. |+ ...||+++
T Consensus 108 h~gEE~~yVLeG~v~vtl~g~~~~L~~Gds~ 138 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVCKNKFLSVKGSTF 138 (166)
T ss_dssp CSEEEEEEEEESEEEEEETTEEEEEETTCEE
T ss_pred CCceEEEEEEEeEEEEEECCEEEEEcCCCEE
Confidence 35677899999999964 43 33366654
No 148
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=21.17 E-value=70 Score=23.24 Aligned_cols=30 Identities=10% Similarity=-0.127 Sum_probs=23.8
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.++...|.+.+
T Consensus 59 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 88 (279)
T 1hg4_A 59 QLFQMVEYARMMPHFAQVPLDDQVILLKAA 88 (279)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhCCHHHHHHHHHHH
Confidence 345567999999999999999887765543
No 149
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=21.17 E-value=1.3e+02 Score=19.56 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=19.4
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 35 YERHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 35 ~~~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
+-.+++|..-.+ -..+-++.|++|++.+.
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~ 89 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVR 89 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEE
Confidence 445677732222 24788999999999864
No 150
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=20.60 E-value=61 Score=23.89 Aligned_cols=29 Identities=14% Similarity=-0.023 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 5 LQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 5 ~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
+..+.++.|++|.|..|+.++...|.+.+
T Consensus 101 l~~~VewaK~lP~F~~L~~~DQ~~LLk~~ 129 (283)
T 3ipq_A 101 VQEIVDFAKQLPGFLQLSREDQIALLKTS 129 (283)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcChhhCCHHHHHHHHHHH
Confidence 45567999999999999999988765544
No 151
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.40 E-value=95 Score=17.72 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=16.7
Q ss_pred CCCCCC-CCCHHHHHHHHhhcc
Q psy8804 14 GLEALA-PYRDSVLRSLCRVVR 34 (114)
Q Consensus 14 ~v~lF~-~L~~~~l~~La~~~~ 34 (114)
.+|-|. .|++++++.|+....
T Consensus 61 ~Mp~~~~~ls~~ei~~l~~yl~ 82 (89)
T 1f1f_A 61 AMPGFNGRLSPLQIEDVAAYVV 82 (89)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHHHH
Confidence 478886 599999999987643
No 152
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=20.39 E-value=63 Score=23.16 Aligned_cols=30 Identities=7% Similarity=-0.083 Sum_probs=23.5
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.++.-.|.+.+
T Consensus 68 ~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~ 97 (254)
T 3b0t_A 68 SIQKVIGFAKMIPGFRDLTSEDQIVLLKSS 97 (254)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcccCCHHHHHHHHHHh
Confidence 345567999999999999998887765443
No 153
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=20.38 E-value=62 Score=23.42 Aligned_cols=30 Identities=3% Similarity=-0.074 Sum_probs=23.8
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 54 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 83 (264)
T 1g2n_A 54 QIAALVVWARDIPHFSQLEMEDQILLIKGS 83 (264)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhcCCHHHHHHHHHHh
Confidence 345578999999999999999887765543
No 154
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=20.35 E-value=93 Score=19.37 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=18.3
Q ss_pred cCCCEEEe---cCCCCCeEEEEEeeeEEEe
Q psy8804 39 QANDVLYY---TGELSTSWYILLSGSVFID 65 (114)
Q Consensus 39 ~~G~~If~---qGd~~~~~yiIlsG~VkI~ 65 (114)
.+|+.... -...++.+++|++|++.+.
T Consensus 38 ~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~ 67 (112)
T 2opk_A 38 SNGQASPPGFWYDSPQDEWVMVVSGSAGIE 67 (112)
T ss_dssp ESSCCCCTTCCBCCSSEEEEEEEESCEEEE
T ss_pred eCCccCCCCccccCCccEEEEEEeCeEEEE
Confidence 34544433 2346789999999999864
No 155
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=20.33 E-value=76 Score=23.16 Aligned_cols=30 Identities=7% Similarity=-0.056 Sum_probs=23.7
Q ss_pred hHHHHHHHhhCCCCCCCCCHHHHHHHHhhc
Q psy8804 4 DLQIIYYGLHGLEALAPYRDSVLRSLCRVV 33 (114)
Q Consensus 4 d~e~i~~~Lr~v~lF~~L~~~~l~~La~~~ 33 (114)
.+..+.++.|++|.|..|+.+++..|.+.+
T Consensus 61 ~l~~~VewAK~ip~F~~L~~~DQv~LLk~~ 90 (269)
T 1t7r_A 61 QLVHVVKWAKALPGFRNLHVDDQMAVIQYS 90 (269)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHhhCCHHHHHHHHHHh
Confidence 345577999999999999999887765543
No 156
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=20.24 E-value=75 Score=21.94 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=17.8
Q ss_pred EEecCCCCCeEEEEEeeeEEEe
Q psy8804 44 LYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 44 If~qGd~~~~~yiIlsG~VkI~ 65 (114)
-++.-+..|-+|+|++|++.+.
T Consensus 43 ~~h~H~~tDE~Fivl~G~l~i~ 64 (140)
T 3d0j_A 43 HLEIHHSTDEQFILSAGKAILI 64 (140)
T ss_dssp EEEEESSCCEEEEEEESCEEEE
T ss_pred hhccCCCCCeEEEEEecEEEEE
Confidence 3455667899999999999875
No 157
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=20.18 E-value=1.1e+02 Score=19.13 Aligned_cols=29 Identities=14% Similarity=-0.133 Sum_probs=16.1
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeeEEEe
Q psy8804 37 RHQANDVLYYTGELSTSWYILLSGSVFID 65 (114)
Q Consensus 37 ~~~~G~~If~qGd~~~~~yiIlsG~VkI~ 65 (114)
.+++|..+-..-.+...++.|++|++.+.
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~ 73 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLV 73 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEE
Confidence 34444433222233445566999999865
Done!