RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8804
         (114 letters)



>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
           and 3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score = 45.5 bits (107), Expect = 5e-08
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 2   ADDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERH-QANDVLYYTGELSTSWYILLSG 60
            DDL+IIY  L  ++AL+    +V R L  V+ +E H +   VL+  GE  TSWYI+L G
Sbjct: 2   VDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKG 61

Query: 61  SVFIDGSMFLPQSRNFVFNVFSPVFGLILNPSVSMAAKVST 101
           SV +              + F  +  +   P  +       
Sbjct: 62  SVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLRED 102


>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
          and 3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 155

 Score = 41.0 bits (95), Expect = 5e-06
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 3  DDLQIIYYGLHGLEALAPYRDSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSV 62
          +D+ II+  L G++A   +  ++LR +C    YE  +    L+  G++ T+WY +L+GS+
Sbjct: 17 EDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL 76


>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 132

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 10/66 (15%), Positives = 22/66 (33%)

Query: 23 DSVLRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQSRNFVFNVFS 82
          D  L          ++ +   L + GE + + Y ++ GSV +       +     +    
Sbjct: 3  DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQG 62

Query: 83 PVFGLI 88
             G +
Sbjct: 63 DFIGEL 68


>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 134

 Score = 29.4 bits (65), Expect = 0.060
 Identities = 12/61 (19%), Positives = 21/61 (34%)

Query: 26 LRSLCRVVRYERHQANDVLYYTGELSTSWYILLSGSVFIDGSMFLPQSRNFVFNVFSPVF 85
          L  L       R+ A   + Y G+   + + ++ GSV I       +     +      F
Sbjct: 5  LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 64

Query: 86 G 86
          G
Sbjct: 65 G 65


>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
          (IleRS) {Thermus thermophilus [TaxId: 274]}
          Length = 452

 Score = 24.5 bits (52), Expect = 4.1
 Identities = 3/17 (17%), Positives = 5/17 (29%)

Query: 32 VVRYERHQANDVLYYTG 48
            RY+  +        G
Sbjct: 67 FPRYKTMRGYYAPRRAG 83


>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
           cedar (Juniperus ashei) [TaxId: 13101]}
          Length = 346

 Score = 24.2 bits (52), Expect = 5.4
 Identities = 6/60 (10%), Positives = 19/60 (31%)

Query: 41  NDVLYYTGELSTSWYILLSGSVFIDGSMFLPQSRNFVFNVFSPVFGLILNPSVSMAAKVS 100
             +   +     +W    +   FI+G+ F+   +    N+++      +    +      
Sbjct: 281 KRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTK 340


>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase
          (LeuRS) {Thermus thermophilus [TaxId: 274]}
          Length = 494

 Score = 23.8 bits (50), Expect = 6.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 32 VVRYERHQANDVLYYTG 48
          + R+ R Q  +VL+  G
Sbjct: 62 LARFRRMQGYEVLHPMG 78


>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase
          (ValRS) {Thermus thermophilus [TaxId: 274]}
          Length = 425

 Score = 23.7 bits (50), Expect = 6.5
 Identities = 4/17 (23%), Positives = 11/17 (64%)

Query: 32 VVRYERHQANDVLYYTG 48
          ++RY+R +  + ++  G
Sbjct: 63 LIRYKRMRGFEAVWLPG 79


>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
           [TaxId: 11103]}
          Length = 530

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 10/51 (19%)

Query: 3   DDLQIIYYGLHGLEALAPYRDS---------VLRSL-CRVVRYERHQANDV 43
            DL  I   LHGL A + +  S          LR L    +R  RH+A  V
Sbjct: 457 LDLPQIIERLHGLSAFSLHSYSPGEINRVASCLRKLGVPPLRVWRHRARSV 507


>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
          (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
          Length = 361

 Score = 23.8 bits (50), Expect = 7.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 32 VVRYERHQANDVLYYTG 48
           VRY R +  DV++  G
Sbjct: 32 FVRYLRLKGEDVVFICG 48


>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 348

 Score = 23.5 bits (49), Expect = 8.1
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 32 VVRYERHQANDVLYYTG 48
          + R+ R       + TG
Sbjct: 32 LARWHRLDGYRTFFLTG 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 421,264
Number of extensions: 16779
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 14
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)